Query 005409
Match_columns 698
No_of_seqs 342 out of 3386
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 4.3E-71 9.2E-76 636.4 53.1 529 90-682 23-572 (574)
2 PRK01610 putative voltage-gate 100.0 3.4E-62 7.3E-67 539.2 45.2 411 90-563 3-414 (418)
3 KOG0474 Cl- channel CLC-7 and 100.0 2.3E-62 5E-67 527.9 31.9 578 53-697 54-761 (762)
4 KOG0475 Cl- channel CLC-3 and 100.0 2.6E-61 5.5E-66 521.8 27.0 501 95-682 58-609 (696)
5 cd01033 ClC_like Putative ClC 100.0 2.6E-59 5.6E-64 512.8 42.4 384 99-551 1-385 (388)
6 PRK05277 chloride channel prot 100.0 1.5E-57 3.3E-62 507.2 43.7 414 93-565 2-416 (438)
7 cd03684 ClC_3_like ClC-3-like 100.0 3.5E-58 7.6E-63 511.6 36.9 409 99-565 1-439 (445)
8 cd01031 EriC ClC chloride chan 100.0 1.3E-57 2.9E-62 502.9 40.9 400 98-562 1-400 (402)
9 COG0038 EriC Chloride channel 100.0 7.1E-56 1.5E-60 491.5 43.7 409 90-564 21-429 (443)
10 cd03685 ClC_6_like ClC-6-like 100.0 1.5E-56 3.3E-61 500.7 34.3 426 55-565 1-453 (466)
11 cd01034 EriC_like ClC chloride 100.0 1.2E-55 2.7E-60 484.9 39.2 387 103-560 1-390 (390)
12 PF00654 Voltage_CLC: Voltage 100.0 4.1E-55 8.9E-60 475.3 34.8 350 150-550 1-354 (355)
13 cd01036 ClC_euk Chloride chann 100.0 5.4E-55 1.2E-59 482.8 33.7 388 99-560 1-416 (416)
14 cd00400 Voltage_gated_ClC CLC 100.0 5E-54 1.1E-58 472.1 41.0 383 99-546 1-383 (383)
15 cd03683 ClC_1_like ClC-1-like 100.0 3.8E-54 8.3E-59 477.0 33.8 399 92-565 2-418 (426)
16 KOG0476 Cl- channel CLC-2 and 100.0 1.1E-55 2.3E-60 483.7 15.1 494 92-682 96-648 (931)
17 PRK03655 putative ion channel 100.0 5E-51 1.1E-55 448.2 43.6 383 89-549 10-397 (414)
18 cd03682 ClC_sycA_like ClC sycA 100.0 2.8E-51 6E-56 448.4 41.2 373 95-559 2-377 (378)
19 PRK01862 putative voltage-gate 99.8 7E-20 1.5E-24 211.6 23.9 189 350-559 25-226 (574)
20 cd00400 Voltage_gated_ClC CLC 99.7 6.5E-17 1.4E-21 178.1 16.2 184 357-560 1-194 (383)
21 cd01031 EriC ClC chloride chan 99.7 1.7E-16 3.7E-21 175.8 16.0 184 356-559 1-194 (402)
22 cd01034 EriC_like ClC chloride 99.7 1.7E-15 3.7E-20 167.0 21.4 192 88-337 198-389 (390)
23 PRK05277 chloride channel prot 99.7 1.1E-15 2.3E-20 171.1 19.7 190 351-559 2-204 (438)
24 cd01033 ClC_like Putative ClC 99.7 2E-15 4.4E-20 166.1 20.6 182 89-330 202-386 (388)
25 PRK01610 putative voltage-gate 99.6 8.7E-14 1.9E-18 154.4 20.3 191 88-338 217-411 (418)
26 cd03682 ClC_sycA_like ClC sycA 99.6 4.7E-14 1E-18 154.9 18.0 174 353-551 2-179 (378)
27 cd03685 ClC_6_like ClC-6-like 99.5 1E-13 2.2E-18 155.9 14.9 196 349-549 32-240 (466)
28 COG0038 EriC Chloride channel 99.5 1.2E-12 2.5E-17 146.3 18.2 144 391-554 68-217 (443)
29 cd01036 ClC_euk Chloride chann 99.5 3.6E-13 7.8E-18 149.7 13.2 191 357-552 1-202 (416)
30 cd03683 ClC_1_like ClC-1-like 99.5 4.9E-13 1.1E-17 148.9 14.2 188 351-550 3-201 (426)
31 cd03684 ClC_3_like ClC-3-like 99.4 2.4E-12 5.2E-17 144.1 15.9 178 357-551 1-182 (445)
32 PRK03655 putative ion channel 99.4 2.1E-11 4.6E-16 134.8 19.7 176 350-551 13-202 (414)
33 PF00654 Voltage_CLC: Voltage 99.3 2.8E-11 6.1E-16 132.0 13.1 146 395-560 1-151 (355)
34 KOG0474 Cl- channel CLC-7 and 98.9 1.8E-09 3.9E-14 119.1 8.8 189 349-550 87-301 (762)
35 PF00571 CBS: CBS domain CBS d 98.8 1.2E-08 2.5E-13 80.5 7.6 56 626-681 1-56 (57)
36 COG3448 CBS-domain-containing 98.8 4E-08 8.7E-13 99.9 10.2 59 620-678 241-299 (382)
37 cd04603 CBS_pair_KefB_assoc Th 98.3 1E-06 2.2E-11 79.0 6.2 56 623-678 55-110 (111)
38 COG2524 Predicted transcriptio 98.3 1.2E-06 2.7E-11 87.9 6.8 74 608-681 218-291 (294)
39 cd04619 CBS_pair_6 The CBS dom 98.2 2.8E-06 6.1E-11 76.5 6.5 58 621-678 56-113 (114)
40 cd04597 CBS_pair_DRTGG_assoc2 98.1 7.7E-06 1.7E-10 74.0 6.3 55 624-678 58-112 (113)
41 COG3448 CBS-domain-containing 98.0 1.5E-05 3.2E-10 81.6 8.2 62 621-682 312-373 (382)
42 cd04620 CBS_pair_7 The CBS dom 97.9 2.2E-05 4.7E-10 70.4 6.5 56 623-678 57-114 (115)
43 COG4109 Predicted transcriptio 97.9 3E-05 6.5E-10 81.2 7.9 84 597-684 220-309 (432)
44 cd04639 CBS_pair_26 The CBS do 97.9 2.2E-05 4.8E-10 69.8 6.2 56 623-678 55-110 (111)
45 cd04615 CBS_pair_2 The CBS dom 97.9 2.6E-05 5.7E-10 69.5 6.7 58 621-678 55-112 (113)
46 cd04607 CBS_pair_NTP_transfera 97.9 2.8E-05 6E-10 69.6 6.8 55 623-677 57-111 (113)
47 cd04801 CBS_pair_M50_like This 97.9 1.9E-05 4.2E-10 70.7 5.4 56 623-678 56-113 (114)
48 KOG0476 Cl- channel CLC-2 and 97.9 4.4E-05 9.6E-10 86.7 9.3 172 348-531 94-275 (931)
49 cd04595 CBS_pair_DHH_polyA_Pol 97.9 3.3E-05 7.2E-10 68.6 6.7 56 622-678 54-109 (110)
50 cd04600 CBS_pair_HPP_assoc Thi 97.9 2.8E-05 6.2E-10 70.6 6.4 57 622-678 67-123 (124)
51 cd04627 CBS_pair_14 The CBS do 97.9 3E-05 6.6E-10 70.6 6.6 53 626-678 70-122 (123)
52 cd04588 CBS_pair_CAP-ED_DUF294 97.9 3.6E-05 7.8E-10 68.3 6.8 55 624-678 55-109 (110)
53 cd04611 CBS_pair_PAS_GGDEF_DUF 97.9 3.3E-05 7.2E-10 68.5 6.6 57 622-678 54-110 (111)
54 cd04617 CBS_pair_4 The CBS dom 97.9 2.5E-05 5.5E-10 70.6 5.9 57 622-678 56-117 (118)
55 COG2524 Predicted transcriptio 97.8 2.2E-05 4.9E-10 79.0 5.6 62 621-683 169-230 (294)
56 cd04630 CBS_pair_17 The CBS do 97.8 4.3E-05 9.4E-10 68.5 6.7 56 622-678 58-113 (114)
57 cd04596 CBS_pair_DRTGG_assoc T 97.8 4.5E-05 9.7E-10 67.7 6.6 56 623-678 52-107 (108)
58 cd04625 CBS_pair_12 The CBS do 97.8 4.2E-05 9.2E-10 68.1 6.4 55 623-678 57-111 (112)
59 PRK07107 inosine 5-monophospha 97.8 3.1E-05 6.8E-10 87.8 6.7 61 621-681 158-220 (502)
60 PLN02274 inosine-5'-monophosph 97.8 3.9E-05 8.5E-10 87.2 7.3 64 622-685 161-226 (505)
61 PRK11543 gutQ D-arabinose 5-ph 97.8 2.7E-05 5.9E-10 83.9 5.8 60 623-682 196-257 (321)
62 cd04585 CBS_pair_ACT_assoc2 Th 97.8 5.1E-05 1.1E-09 68.3 6.7 56 623-678 66-121 (122)
63 cd04641 CBS_pair_28 The CBS do 97.8 4.1E-05 8.9E-10 69.4 6.0 52 627-678 68-119 (120)
64 cd04606 CBS_pair_Mg_transporte 97.8 4.8E-05 1E-09 67.6 6.4 57 623-679 52-108 (109)
65 cd04610 CBS_pair_ParBc_assoc T 97.8 5.6E-05 1.2E-09 66.6 6.7 56 623-678 51-106 (107)
66 cd04803 CBS_pair_15 The CBS do 97.8 4.9E-05 1.1E-09 68.8 6.4 57 622-678 65-121 (122)
67 cd04604 CBS_pair_KpsF_GutQ_ass 97.8 5.2E-05 1.1E-09 67.5 6.4 55 624-678 59-113 (114)
68 PRK10892 D-arabinose 5-phospha 97.8 4E-05 8.8E-10 82.7 6.7 60 622-681 200-261 (326)
69 cd04602 CBS_pair_IMPDH_2 This 97.8 5.5E-05 1.2E-09 67.9 6.4 55 624-678 57-113 (114)
70 cd04583 CBS_pair_ABC_OpuCA_ass 97.7 6.5E-05 1.4E-09 66.3 6.7 56 623-678 53-108 (109)
71 cd04635 CBS_pair_22 The CBS do 97.7 5.5E-05 1.2E-09 68.5 6.3 57 622-678 65-121 (122)
72 TIGR00400 mgtE Mg2+ transporte 97.7 6.7E-05 1.4E-09 84.6 8.0 64 622-685 193-256 (449)
73 cd04631 CBS_pair_18 The CBS do 97.7 5.9E-05 1.3E-09 68.6 6.1 56 623-678 69-124 (125)
74 cd04601 CBS_pair_IMPDH This cd 97.7 7.3E-05 1.6E-09 66.1 6.5 56 623-678 53-109 (110)
75 cd04593 CBS_pair_EriC_assoc_ba 97.7 6.9E-05 1.5E-09 67.2 6.3 56 623-678 57-114 (115)
76 cd04618 CBS_pair_5 The CBS dom 97.7 4.6E-05 9.9E-10 67.1 4.9 45 634-678 52-97 (98)
77 cd04587 CBS_pair_CAP-ED_DUF294 97.7 6.2E-05 1.3E-09 67.0 5.9 55 624-678 58-112 (113)
78 cd04636 CBS_pair_23 The CBS do 97.7 9.7E-05 2.1E-09 68.2 7.1 56 622-678 76-131 (132)
79 cd04622 CBS_pair_9 The CBS dom 97.7 7.3E-05 1.6E-09 66.6 6.1 55 624-678 58-112 (113)
80 PRK10892 D-arabinose 5-phospha 97.7 7.7E-05 1.7E-09 80.6 7.3 57 622-679 267-323 (326)
81 COG3620 Predicted transcriptio 97.7 8.4E-05 1.8E-09 69.7 6.4 105 574-681 67-184 (187)
82 cd04582 CBS_pair_ABC_OpuCA_ass 97.7 0.0001 2.2E-09 64.9 6.8 54 625-678 52-105 (106)
83 cd04629 CBS_pair_16 The CBS do 97.7 6.8E-05 1.5E-09 66.9 5.7 55 623-678 59-113 (114)
84 cd04605 CBS_pair_MET2_assoc Th 97.7 0.00011 2.3E-09 65.2 6.9 55 624-678 55-109 (110)
85 cd04590 CBS_pair_CorC_HlyC_ass 97.7 9E-05 1.9E-09 65.8 6.1 54 624-678 57-110 (111)
86 cd04640 CBS_pair_27 The CBS do 97.7 6.3E-05 1.4E-09 68.9 5.3 57 622-678 62-125 (126)
87 cd04623 CBS_pair_10 The CBS do 97.6 0.00011 2.4E-09 65.2 6.5 55 623-678 58-112 (113)
88 cd04589 CBS_pair_CAP-ED_DUF294 97.6 0.0001 2.2E-09 65.5 6.3 56 622-678 55-110 (111)
89 cd04633 CBS_pair_20 The CBS do 97.6 8.5E-05 1.8E-09 67.1 5.8 56 622-678 65-120 (121)
90 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 9E-05 2E-09 65.9 5.8 56 623-678 57-113 (114)
91 cd04608 CBS_pair_PALP_assoc Th 97.6 2.7E-05 5.9E-10 71.5 2.5 58 622-679 57-123 (124)
92 cd04586 CBS_pair_BON_assoc Thi 97.6 7.7E-05 1.7E-09 69.2 5.5 56 622-678 79-134 (135)
93 cd04800 CBS_pair_CAP-ED_DUF294 97.6 0.00012 2.7E-09 64.9 6.6 55 623-678 56-110 (111)
94 PRK11543 gutQ D-arabinose 5-ph 97.6 0.00011 2.4E-09 79.1 7.3 57 623-679 262-318 (321)
95 cd04626 CBS_pair_13 The CBS do 97.6 0.00012 2.6E-09 65.1 6.3 55 623-678 56-110 (111)
96 cd04802 CBS_pair_3 The CBS dom 97.6 0.00014 3E-09 64.7 6.7 56 622-678 56-111 (112)
97 PRK07807 inosine 5-monophospha 97.6 0.00011 2.4E-09 83.0 7.5 59 624-682 148-206 (479)
98 TIGR01303 IMP_DH_rel_1 IMP deh 97.6 0.00013 2.8E-09 82.4 7.9 61 623-683 145-205 (475)
99 cd04599 CBS_pair_GGDEF_assoc2 97.6 0.00014 3.1E-09 63.7 6.6 53 624-677 51-103 (105)
100 COG3620 Predicted transcriptio 97.6 9.3E-05 2E-09 69.5 5.4 60 622-682 63-122 (187)
101 cd04621 CBS_pair_8 The CBS dom 97.6 0.00015 3.3E-09 67.7 7.0 55 623-678 80-134 (135)
102 cd04624 CBS_pair_11 The CBS do 97.6 0.00015 3.2E-09 64.5 6.7 56 623-678 56-111 (112)
103 cd04642 CBS_pair_29 The CBS do 97.6 0.00014 3.1E-09 66.5 6.6 52 627-678 74-125 (126)
104 cd04612 CBS_pair_SpoIVFB_EriC_ 97.6 0.00018 3.8E-09 63.7 6.8 55 624-678 56-110 (111)
105 PTZ00314 inosine-5'-monophosph 97.6 9E-05 2E-09 84.2 6.0 63 622-684 157-221 (495)
106 cd04643 CBS_pair_30 The CBS do 97.6 0.00012 2.6E-09 65.5 5.7 54 623-678 62-115 (116)
107 TIGR00393 kpsF KpsF/GutQ famil 97.6 8.9E-05 1.9E-09 77.6 5.5 59 623-681 154-213 (268)
108 cd04637 CBS_pair_24 The CBS do 97.6 0.00013 2.9E-09 66.0 6.0 55 624-678 67-121 (122)
109 COG0517 FOG: CBS domain [Gener 97.6 0.00017 3.8E-09 64.4 6.7 52 625-676 63-116 (117)
110 cd04594 CBS_pair_EriC_assoc_ar 97.6 0.00016 3.6E-09 63.7 6.4 53 625-678 51-103 (104)
111 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00029 6.2E-09 65.9 8.0 51 632-682 1-51 (133)
112 cd04641 CBS_pair_28 The CBS do 97.5 0.00023 5.1E-09 64.4 7.3 49 633-681 2-50 (120)
113 cd04632 CBS_pair_19 The CBS do 97.5 0.00015 3.3E-09 66.3 6.1 57 622-678 69-127 (128)
114 cd04584 CBS_pair_ACT_assoc Thi 97.5 0.00023 4.9E-09 64.2 6.7 56 622-678 65-120 (121)
115 cd04618 CBS_pair_5 The CBS dom 97.5 0.00023 4.9E-09 62.6 6.5 48 633-680 2-50 (98)
116 TIGR01137 cysta_beta cystathio 97.5 0.0002 4.4E-09 80.9 7.6 62 620-681 331-392 (454)
117 smart00116 CBS Domain in cysta 97.5 0.00033 7.2E-09 51.4 6.2 47 634-680 2-48 (49)
118 cd04609 CBS_pair_PALP_assoc2 T 97.5 0.00018 4E-09 63.4 5.5 54 623-678 56-109 (110)
119 COG2239 MgtE Mg/Co/Ni transpor 97.5 0.00016 3.4E-09 80.6 6.1 65 622-686 194-258 (451)
120 PRK14869 putative manganese-de 97.5 0.00025 5.3E-09 82.2 8.1 59 624-682 68-126 (546)
121 PRK14869 putative manganese-de 97.5 0.00021 4.5E-09 82.8 7.3 63 619-681 241-304 (546)
122 cd04614 CBS_pair_1 The CBS dom 97.4 0.00026 5.6E-09 61.9 6.1 45 634-678 51-95 (96)
123 cd04598 CBS_pair_GGDEF_assoc T 97.4 0.00033 7.1E-09 63.0 6.6 57 622-678 59-118 (119)
124 cd04591 CBS_pair_EriC_assoc_eu 97.4 0.00034 7.3E-09 62.2 6.1 49 629-678 56-104 (105)
125 cd04608 CBS_pair_PALP_assoc Th 97.4 0.00057 1.2E-08 62.7 7.5 51 632-682 2-52 (124)
126 cd04624 CBS_pair_11 The CBS do 97.3 0.00051 1.1E-08 61.0 6.9 50 633-682 2-51 (112)
127 TIGR01302 IMP_dehydrog inosine 97.3 0.0003 6.6E-09 79.3 6.3 61 622-682 141-202 (450)
128 cd04614 CBS_pair_1 The CBS dom 97.3 0.00056 1.2E-08 59.7 6.6 48 632-679 1-48 (96)
129 PRK15094 magnesium/cobalt effl 97.3 0.00037 8E-09 74.1 6.5 58 623-681 132-189 (292)
130 cd02205 CBS_pair The CBS domai 97.2 0.00072 1.6E-08 59.1 6.3 53 626-678 60-112 (113)
131 PRK07807 inosine 5-monophospha 97.2 0.00069 1.5E-08 76.6 7.5 61 618-678 83-143 (479)
132 PRK05567 inosine 5'-monophosph 97.2 0.00072 1.6E-08 77.1 7.3 60 623-682 146-206 (486)
133 cd04638 CBS_pair_25 The CBS do 97.2 0.00091 2E-08 58.9 6.5 54 624-678 52-105 (106)
134 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.00075 1.6E-08 59.9 5.9 50 632-681 1-50 (114)
135 cd04634 CBS_pair_21 The CBS do 97.2 0.001 2.2E-08 62.5 7.2 56 622-678 87-142 (143)
136 cd04605 CBS_pair_MET2_assoc Th 97.1 0.0014 3.1E-08 57.9 7.5 50 632-681 2-51 (110)
137 PRK15094 magnesium/cobalt effl 97.1 0.00082 1.8E-08 71.5 6.9 61 621-681 64-127 (292)
138 cd04626 CBS_pair_13 The CBS do 97.1 0.001 2.2E-08 59.0 6.5 49 633-681 2-50 (111)
139 cd04623 CBS_pair_10 The CBS do 97.1 0.0012 2.6E-08 58.4 7.0 49 633-681 2-50 (113)
140 TIGR03520 GldE gliding motilit 97.1 0.00078 1.7E-08 75.1 6.9 61 621-681 188-251 (408)
141 cd04619 CBS_pair_6 The CBS dom 97.1 0.0012 2.6E-08 59.2 6.7 49 633-681 2-50 (114)
142 cd04643 CBS_pair_30 The CBS do 97.1 0.0015 3.3E-08 58.3 7.1 49 633-681 2-50 (116)
143 KOG2550 IMP dehydrogenase/GMP 97.1 0.00049 1.1E-08 73.6 4.2 86 608-696 158-243 (503)
144 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0015 3.3E-08 57.3 6.8 48 632-679 1-48 (106)
145 cd04603 CBS_pair_KefB_assoc Th 97.1 0.0014 2.9E-08 58.6 6.6 47 633-679 2-48 (111)
146 cd04632 CBS_pair_19 The CBS do 97.0 0.0019 4.2E-08 59.0 7.6 48 633-680 2-49 (128)
147 cd04600 CBS_pair_HPP_assoc Thi 97.0 0.0019 4.1E-08 58.5 7.1 50 632-681 2-51 (124)
148 cd04630 CBS_pair_17 The CBS do 97.0 0.0024 5.1E-08 57.1 7.3 50 632-681 1-51 (114)
149 cd04642 CBS_pair_29 The CBS do 97.0 0.0015 3.3E-08 59.6 6.1 49 633-681 2-50 (126)
150 cd04593 CBS_pair_EriC_assoc_ba 97.0 0.0023 5.1E-08 57.2 7.1 49 633-681 2-50 (115)
151 cd04617 CBS_pair_4 The CBS dom 97.0 0.0027 5.8E-08 57.3 7.5 49 633-681 2-50 (118)
152 cd04607 CBS_pair_NTP_transfera 96.9 0.002 4.4E-08 57.4 6.6 49 633-681 3-51 (113)
153 cd04615 CBS_pair_2 The CBS dom 96.9 0.0022 4.8E-08 56.9 6.8 48 633-680 2-49 (113)
154 cd04801 CBS_pair_M50_like This 96.9 0.0022 4.7E-08 57.3 6.7 49 633-681 2-51 (114)
155 cd04639 CBS_pair_26 The CBS do 96.9 0.0021 4.6E-08 56.9 6.5 49 633-681 2-50 (111)
156 cd04631 CBS_pair_18 The CBS do 96.9 0.0022 4.8E-08 58.1 6.6 49 633-681 2-51 (125)
157 cd04586 CBS_pair_BON_assoc Thi 96.9 0.0021 4.5E-08 59.5 6.5 49 632-680 2-50 (135)
158 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0031 6.8E-08 55.8 7.4 50 632-681 1-51 (111)
159 cd04595 CBS_pair_DHH_polyA_Pol 96.9 0.0028 6.1E-08 56.1 6.8 49 632-681 2-50 (110)
160 cd04803 CBS_pair_15 The CBS do 96.9 0.0025 5.5E-08 57.4 6.5 49 633-681 2-50 (122)
161 cd04627 CBS_pair_14 The CBS do 96.9 0.0031 6.8E-08 57.2 7.1 49 633-681 2-51 (123)
162 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0019 4.2E-08 67.5 6.4 51 622-672 218-268 (268)
163 cd04611 CBS_pair_PAS_GGDEF_DUF 96.8 0.003 6.5E-08 55.7 6.7 48 633-681 2-49 (111)
164 cd04635 CBS_pair_22 The CBS do 96.8 0.0023 5.1E-08 57.6 6.1 48 632-679 1-48 (122)
165 cd04629 CBS_pair_16 The CBS do 96.8 0.0029 6.3E-08 56.2 6.6 49 633-681 2-50 (114)
166 cd04583 CBS_pair_ABC_OpuCA_ass 96.8 0.0039 8.5E-08 54.8 7.4 49 632-680 2-50 (109)
167 cd04621 CBS_pair_8 The CBS dom 96.8 0.0028 6.1E-08 59.0 6.7 49 633-681 2-50 (135)
168 cd04640 CBS_pair_27 The CBS do 96.8 0.0032 7E-08 57.5 6.9 46 633-678 2-47 (126)
169 cd04636 CBS_pair_23 The CBS do 96.8 0.0028 6E-08 58.4 6.3 49 633-681 2-50 (132)
170 cd04596 CBS_pair_DRTGG_assoc T 96.8 0.0033 7.2E-08 55.5 6.5 48 632-679 2-49 (108)
171 TIGR03520 GldE gliding motilit 96.7 0.003 6.5E-08 70.4 7.3 58 623-681 254-311 (408)
172 PRK05567 inosine 5'-monophosph 96.7 0.0031 6.7E-08 71.9 7.4 56 623-678 86-141 (486)
173 cd04588 CBS_pair_CAP-ED_DUF294 96.7 0.0052 1.1E-07 54.3 7.4 49 632-681 1-49 (110)
174 cd02205 CBS_pair The CBS domai 96.7 0.006 1.3E-07 53.1 7.5 50 633-682 2-51 (113)
175 cd04612 CBS_pair_SpoIVFB_EriC_ 96.7 0.005 1.1E-07 54.3 6.9 49 632-681 1-49 (111)
176 COG2905 Predicted signal-trans 96.7 0.002 4.4E-08 71.9 5.1 71 623-693 148-219 (610)
177 cd04622 CBS_pair_9 The CBS dom 96.7 0.0048 1E-07 54.7 6.7 45 632-677 1-45 (113)
178 cd04634 CBS_pair_21 The CBS do 96.6 0.0045 9.7E-08 58.1 6.7 49 632-681 1-49 (143)
179 TIGR01186 proV glycine betaine 96.6 0.0041 8.9E-08 68.1 7.4 58 624-682 302-359 (363)
180 cd04637 CBS_pair_24 The CBS do 96.6 0.0065 1.4E-07 54.8 7.5 47 633-680 2-48 (122)
181 TIGR01302 IMP_dehydrog inosine 96.6 0.0044 9.5E-08 70.0 7.5 59 620-678 76-137 (450)
182 COG2905 Predicted signal-trans 96.6 0.0036 7.7E-08 70.0 6.5 73 608-681 196-270 (610)
183 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.006 1.3E-07 53.6 6.8 48 633-681 2-49 (110)
184 COG4109 Predicted transcriptio 96.6 0.0024 5.2E-08 67.3 4.7 58 622-679 186-245 (432)
185 cd04584 CBS_pair_ACT_assoc Thi 96.6 0.0055 1.2E-07 55.0 6.6 48 633-680 2-49 (121)
186 cd04604 CBS_pair_KpsF_GutQ_ass 96.5 0.0058 1.3E-07 54.1 6.4 50 633-682 3-52 (114)
187 cd04585 CBS_pair_ACT_assoc2 Th 96.5 0.007 1.5E-07 54.2 6.8 48 633-681 2-49 (122)
188 KOG0475 Cl- channel CLC-3 and 96.5 0.00081 1.8E-08 75.6 0.5 111 405-530 150-260 (696)
189 cd04800 CBS_pair_CAP-ED_DUF294 96.5 0.0095 2.1E-07 52.6 7.3 48 632-680 1-48 (111)
190 cd04598 CBS_pair_GGDEF_assoc T 96.4 0.0076 1.6E-07 54.0 6.7 48 633-681 2-50 (119)
191 cd04589 CBS_pair_CAP-ED_DUF294 96.4 0.011 2.4E-07 52.3 7.4 48 633-681 2-49 (111)
192 cd04633 CBS_pair_20 The CBS do 96.4 0.01 2.2E-07 53.4 7.0 48 633-681 2-49 (121)
193 cd04587 CBS_pair_CAP-ED_DUF294 96.3 0.012 2.6E-07 52.1 7.3 46 633-679 2-47 (113)
194 COG0517 FOG: CBS domain [Gener 96.3 0.013 2.9E-07 52.1 7.4 56 628-684 3-58 (117)
195 cd04802 CBS_pair_3 The CBS dom 96.3 0.014 3.1E-07 51.6 7.4 47 633-680 2-48 (112)
196 PRK11573 hypothetical protein; 96.3 0.0093 2E-07 66.6 7.4 61 621-681 184-247 (413)
197 cd04599 CBS_pair_GGDEF_assoc2 96.3 0.012 2.5E-07 51.4 6.7 46 633-679 2-47 (105)
198 PTZ00314 inosine-5'-monophosph 96.2 0.0093 2E-07 68.0 7.4 56 623-678 95-153 (495)
199 cd04601 CBS_pair_IMPDH This cd 96.2 0.011 2.4E-07 52.0 6.2 47 632-678 2-48 (110)
200 cd04591 CBS_pair_EriC_assoc_eu 96.2 0.012 2.5E-07 52.2 6.4 49 633-681 3-54 (105)
201 cd04602 CBS_pair_IMPDH_2 This 96.2 0.012 2.7E-07 52.4 6.4 47 632-678 2-51 (114)
202 TIGR00400 mgtE Mg2+ transporte 96.1 0.0093 2E-07 67.4 6.7 58 621-678 128-190 (449)
203 cd04594 CBS_pair_EriC_assoc_ar 96.1 0.015 3.3E-07 51.0 6.7 44 635-679 4-47 (104)
204 PRK10070 glycine betaine trans 96.1 0.012 2.6E-07 65.3 7.3 59 624-683 337-395 (400)
205 TIGR01303 IMP_DH_rel_1 IMP deh 96.1 0.011 2.5E-07 66.8 6.9 59 619-678 83-141 (475)
206 TIGR01137 cysta_beta cystathio 96.1 0.011 2.4E-07 66.9 6.9 55 623-680 399-453 (454)
207 PRK07107 inosine 5-monophospha 96.0 0.0095 2.1E-07 67.9 6.1 54 625-678 95-154 (502)
208 PLN02274 inosine-5'-monophosph 96.0 0.014 2.9E-07 66.8 7.3 54 626-679 102-158 (505)
209 cd04638 CBS_pair_25 The CBS do 96.0 0.02 4.3E-07 50.2 7.0 47 633-679 2-48 (106)
210 cd04606 CBS_pair_Mg_transporte 96.0 0.01 2.2E-07 52.4 5.0 42 637-678 2-48 (109)
211 cd04610 CBS_pair_ParBc_assoc T 95.9 0.022 4.9E-07 49.8 6.5 46 632-678 2-47 (107)
212 cd04625 CBS_pair_12 The CBS do 95.8 0.031 6.6E-07 49.4 7.4 48 633-681 2-49 (112)
213 cd04620 CBS_pair_7 The CBS dom 95.8 0.028 6.1E-07 50.0 7.0 48 633-681 2-50 (115)
214 COG1253 TlyC Hemolysins and re 95.7 0.021 4.5E-07 64.2 7.0 63 621-683 203-268 (429)
215 COG1253 TlyC Hemolysins and re 94.1 0.11 2.4E-06 58.4 7.2 49 633-681 280-328 (429)
216 KOG1764 5'-AMP-activated prote 94.1 0.11 2.4E-06 57.3 7.0 52 632-683 310-361 (381)
217 PRK11573 hypothetical protein; 94.0 0.11 2.5E-06 58.0 6.8 54 627-681 258-311 (413)
218 COG4535 CorC Putative Mg2+ and 93.5 0.039 8.3E-07 55.5 1.8 61 622-682 65-128 (293)
219 COG4536 CorB Putative Mg2+ and 93.4 0.066 1.4E-06 57.4 3.5 64 621-684 197-263 (423)
220 COG2239 MgtE Mg/Co/Ni transpor 93.3 0.13 2.9E-06 57.6 5.9 57 622-678 130-191 (451)
221 cd04592 CBS_pair_EriC_assoc_eu 92.9 0.11 2.4E-06 48.4 3.8 35 630-664 84-118 (133)
222 COG4536 CorB Putative Mg2+ and 92.7 0.22 4.7E-06 53.6 6.0 57 624-680 265-323 (423)
223 TIGR03415 ABC_choXWV_ATP choli 91.7 0.32 7E-06 53.7 6.2 54 625-681 327-380 (382)
224 KOG1764 5'-AMP-activated prote 90.9 0.31 6.7E-06 53.8 5.0 52 633-684 238-289 (381)
225 COG4535 CorC Putative Mg2+ and 90.4 0.62 1.4E-05 47.1 6.2 84 596-680 98-188 (293)
226 COG1125 OpuBA ABC-type proline 83.8 1.8 4E-05 44.7 5.2 58 622-679 247-308 (309)
227 COG4175 ProV ABC-type proline/ 83.7 1.9 4.1E-05 45.9 5.5 52 629-681 332-383 (386)
228 PRK10070 glycine betaine trans 79.9 3.8 8.3E-05 45.7 6.5 58 624-681 274-334 (400)
229 KOG2550 IMP dehydrogenase/GMP 75.0 2.5 5.5E-05 46.1 3.2 48 632-679 116-166 (503)
230 TIGR01186 proV glycine betaine 71.6 10 0.00022 41.7 7.0 52 630-681 248-299 (363)
231 TIGR01148 mtrC N5-methyltetrah 45.6 3.7E+02 0.0081 27.9 12.2 100 353-481 19-124 (265)
232 PRK09765 PTS system 2-O-a-mann 43.4 2.7E+02 0.0059 33.1 12.7 16 144-159 414-429 (631)
233 PRK01030 tetrahydromethanopter 42.1 3.9E+02 0.0085 27.8 11.8 24 458-481 93-118 (264)
234 PF13807 GNVR: G-rich domain o 27.5 80 0.0017 26.6 3.7 26 86-111 56-81 (82)
235 TIGR02865 spore_II_E stage II 26.6 1E+03 0.022 29.1 14.2 19 498-516 216-234 (764)
236 PRK10490 sensor protein KdpD; 25.1 2.5E+02 0.0055 34.8 8.9 52 316-368 448-499 (895)
237 PF04211 MtrC: Tetrahydrometha 25.0 8.1E+02 0.017 25.6 12.3 18 353-370 19-36 (262)
238 PF13782 SpoVAB: Stage V sporu 23.9 2E+02 0.0043 26.0 5.6 54 351-404 53-106 (110)
239 PF05198 IF3_N: Translation in 23.1 1.6E+02 0.0035 24.7 4.6 26 656-681 13-38 (76)
240 cd02958 UAS UAS family; UAS is 22.2 1.4E+02 0.0031 26.4 4.5 65 619-683 38-110 (114)
241 PF01102 Glycophorin_A: Glycop 21.4 1.4E+02 0.0031 27.5 4.3 17 351-367 66-82 (122)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.3e-71 Score=636.44 Aligned_cols=529 Identities=25% Similarity=0.390 Sum_probs=408.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005409 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (698)
Q Consensus 90 ~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~ 169 (698)
.+++.++++|+++|+++++|+.++++.++++|...+.. ..+.. ..+|++.+++|++||++++++.++.... ..
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~p~~ggli~~~~~~~~~~~--~~ 95 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSF-VEMAK----SLPWYVRVWLPAAGGFLAGCVLLLANRG--AR 95 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH-HHHhh----cccHHHHHHHHHHHHHHHHHHHHHhccc--cc
Confidence 37789999999999999999999999999998753211 01111 1356667889999999999886543322 12
Q ss_pred CCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 005409 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (698)
Q Consensus 170 g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa 249 (698)
+ +++.+.+..-... ..+. .++..+.|++++++++++|+|+|||||++|+|+
T Consensus 96 ~-~g~~~~~~~~~~~---------------------------~~~~-~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga 146 (574)
T PRK01862 96 K-GGKTDYMEAVALG---------------------------DGVV-PVRQSLWRSASSLLTIGSGGSIGREGPMVQLAA 146 (574)
T ss_pred c-CCcHHHHHHHHcC---------------------------CCCC-ChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHH
Confidence 2 2233322211000 0111 123456799999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhh
Q 005409 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (698)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~ 329 (698)
++|++++|+++.+++++|.+++||+|||+||+||||++|++|++|+++.++ ..+++.+ ++++|++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~-------~~~~~~~-~~~as~~a~~v~~~ 218 (574)
T PRK01862 147 LAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSI-------AMESFGP-LVVASVVANIVMRE 218 (574)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhc-------cHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987653 2355665 68999999999999
Q ss_pred hcCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhc
Q 005409 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE 409 (698)
Q Consensus 330 ~~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~ 409 (698)
+.|+++.|.+|.++.++..++++++++|++||++|.+|+++..+.++.+ ++.+.+++++++++|+++|++.+++|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~gl~~g~l~~~~p~ 294 (574)
T PRK01862 219 FAGYQPPYEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQF----KRLPVPLPVRLALGGLLVGVISVWVPE 294 (574)
T ss_pred HcCCCceeeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876656678899999999999999999999887765443 333445677899999999999999999
Q ss_pred cccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcc
Q 005409 410 ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489 (698)
Q Consensus 410 ~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~ 489 (698)
.+|+||+.++.+++++ .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++..+|.
T Consensus 295 ~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~----- 364 (574)
T PRK01862 295 VWGNGYSVVNTILHAP-----WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPG----- 364 (574)
T ss_pred HhcCCHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 9999999999988764 345566777889999999999999999999999999999999999999876554
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhHhhhhcc
Q 005409 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANT 569 (698)
Q Consensus 490 ~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~~~~~~ 569 (698)
...+|..|+++||+|++++++|+|+|++++++|+|++++.++|+|+++++|+++++. ++.+++|+.........
T Consensus 365 -----~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~-~~~~~iy~~~~~~~~~~ 438 (574)
T PRK01862 365 -----HTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA-LGTTSMYEITLRRHQDE 438 (574)
T ss_pred -----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHhcccc
Confidence 223578899999999999999999999999999999999999999999999988754 66789999876543221
Q ss_pred c------cccccccccccccccc----cchhhhcccc-cccccccccc------ccccccchhh--hhhhhccccchhcc
Q 005409 570 N------RKRQFEIYTSRTRGLS----SSDLLAEEEP-YAINLCEVES------SLCIDDWNLE--VEELKRRVFVSEVM 630 (698)
Q Consensus 570 ~------~~~~~~i~~~~~~~l~----~~~lL~~~~~-~~~~l~~v~~------~l~~~d~~~~--~~~~~~~i~v~dvM 630 (698)
. ..+..+++..+...++ ..|.++...+ ....++.+++ .++.+|+.+. +++..++.+++|+|
T Consensus 439 ~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim 518 (574)
T PRK01862 439 AERERLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYA 518 (574)
T ss_pred chhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhc
Confidence 1 1112223322222222 2232222211 1222333322 2344554321 11122346799999
Q ss_pred ccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC--CeEEEEEeHHHHHHHHHH
Q 005409 631 RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 631 ~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~--g~lvGiVt~~dl~~~l~~ 682 (698)
+++++++++|++++|+++.|.+++.+.+||+|++ ++++|+||++|+.+.+++
T Consensus 519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999999999876 489999999999998763
No 2
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=3.4e-62 Score=539.24 Aligned_cols=411 Identities=23% Similarity=0.352 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005409 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (698)
Q Consensus 90 ~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~ 169 (698)
+++++++++|+++|+++++|+.++++++++++.... .++........+| +++++|++||+++++++++.... ..
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~--~~ 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDS---GSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKF--TQ 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cchhhcccccchH-HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 456788999999999999999999999886654321 1111111112345 46889999999999987643221 12
Q ss_pred CCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 005409 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (698)
Q Consensus 170 g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa 249 (698)
..+++++++.+....+ .++| .++.+.|.+++++++++|+|+|||||++|+|+
T Consensus 77 ~~~~g~~~vi~av~~~-------------------g~~~---------~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa 128 (418)
T PRK01610 77 QRPHAPTDYMEALQTD-------------------GQFD---------YAASLVKSLASLLVVTSGSAIGREGAMILLAA 128 (418)
T ss_pred ccCCCcHHHHHHHHcC-------------------CCCC---------ccHHHHHHHHHHHHHHcCCccccccHHHHHHH
Confidence 2234566655431110 0111 23457899999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhh
Q 005409 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (698)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~ 329 (698)
++|++++|+++ ++++||.+++||+|||+|++||||++|++|++|+++.++ .++.+.| +++++++|+++++.
T Consensus 129 ~~g~~~~~~~~-~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~-------~~~~~~p-~~ias~~a~~v~~~ 199 (418)
T PRK01610 129 LAASCFAQRFT-PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTL-------MLASLGP-VVISAVVALLTTNL 199 (418)
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHh-------hHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998 678999999999999999999999999999999987542 3456666 68899999999998
Q ss_pred hcCCC-CccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhh
Q 005409 330 GLGSE-PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFP 408 (698)
Q Consensus 330 ~~g~~-~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P 408 (698)
+.|.+ +.|.++.+...+..++++++++|++||++|.+|+++.++.++.+ ++.+.++++++.++|+++|++.+++|
T Consensus 200 ~~g~~~~~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~----~~~~~~~~~~~~lggli~g~l~~~~p 275 (418)
T PRK01610 200 LNGSDALLYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGF----VSLKLAPPWQLALGGLIVGLLSLFTP 275 (418)
T ss_pred HcCCCCCeeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cccccchhHHHHHHHHHHHHHHHHhh
Confidence 88754 67888765555678999999999999999999999887655443 33344567899999999999999999
Q ss_pred ccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCc
Q 005409 409 EILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPT 488 (698)
Q Consensus 409 ~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~ 488 (698)
+.+|+||+.++.+++++ .....++.++++|+++|++|+|+|.+||.|+|++++||++|+++|.+++..+|+
T Consensus 276 ~~~G~G~~~i~~~~~~~-----~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~---- 346 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAP-----PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPD---- 346 (418)
T ss_pred HHhCCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 99999999999888654 234456667889999999999999999999999999999999999999876654
Q ss_pred cccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhH
Q 005409 489 IHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKV 563 (698)
Q Consensus 489 ~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~ 563 (698)
...++..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++ .+.++++|+...
T Consensus 347 ------~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~-~~~~~siy~~~~ 414 (418)
T PRK01610 347 ------GEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISR-TLRRDSIYRQHT 414 (418)
T ss_pred ------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH-HhCCCCchHHHH
Confidence 12347899999999999999999999999999999999999999999999998876 457788998754
No 3
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-62 Score=527.88 Aligned_cols=578 Identities=20% Similarity=0.270 Sum_probs=393.2
Q ss_pred CcCccccccCCCCCchhhccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 005409 53 STKSLRLRPLGALPENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWL 132 (698)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~ 132 (698)
.-+|+||++ -||+-+|.++....=.+. ..-+..-|.+++++|+.+|+++.+.+..+|.+..+++..+.+.-...
T Consensus 54 ~yESLDYei----~ENdlf~e~~r~~~k~~~-~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~- 127 (762)
T KOG0474|consen 54 DYESLDYEI----CENDLFLEDWRTRDKKKG-RRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEEC- 127 (762)
T ss_pred Cccccchhh----hcchHHHHHHHhhcccce-eeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh-
Confidence 368888888 778777665553221111 01123457789999999999999999999999887765431100000
Q ss_pred ccCCCchhHHHH---HHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCc
Q 005409 133 REKPIPAIWIRV---VLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPT 209 (698)
Q Consensus 133 ~~~~~~~~w~~~---~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 209 (698)
+ ...+..|..+ .....+--++.+.+..+ . +|...|+||||+| +|.|+. ++|.
T Consensus 128 ~-s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~---i-aP~AAGSGIPevK--~YLNGV------------------~iP~ 182 (762)
T KOG0474|consen 128 R-SQKGCLALSLLVLLGFNLVLVFLASVLVAY---I-APVAAGSGIPEVK--CYLNGV------------------KIPG 182 (762)
T ss_pred h-hccccHHHHHHHHHHHhHHHHHHHHHHHHe---e-chhccCCCCchhh--hhhcCc------------------cCcc
Confidence 0 0001122211 11111112222233211 1 4567789999998 577653 4553
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh-----------hcC--CChhhHHHHHHhhhhH
Q 005409 210 IYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN-----------LFD--RRPRRKVSLVAAGSAA 276 (698)
Q Consensus 210 ~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~-----------~~~--~~~~~~r~l~~~G~aA 276 (698)
+...+|++.|+++++.++++|+.+||||||||.|+++|+.++| +|+ +||+|||.++.||+||
T Consensus 183 -----ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAA 257 (762)
T KOG0474|consen 183 -----IVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAA 257 (762)
T ss_pred -----eeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHH
Confidence 3344578999999999999999999999999999999999998 222 5889999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHhc--ccCcccchhhhhhhHHHHHHHHHHHHHHHHhh-----hcCC------CCc--ccccc
Q 005409 277 GISSGFNAAVAGCFFAVESVI--WPSSAADSSASLAYTTSMVILSAVIASVVSEV-----GLGS------EPA--FKVPE 341 (698)
Q Consensus 277 giaa~F~APl~G~lFa~E~~~--~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~-----~~g~------~~~--f~~~~ 341 (698)
|+||+|+||+||++|++|+.. |+ ..+++..++++.+.+++-+. ..|. ..+ |++-+
T Consensus 258 GVaAAF~APvGGvLFaLEE~aS~Wn----------q~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~ 327 (762)
T KOG0474|consen 258 GVAAAFRAPVGGVLFALEEGASWWN----------QALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFD 327 (762)
T ss_pred hHHHHhCCCccceEEEechhhHHHH----------hhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccC
Confidence 999999999999999999974 32 23556678888888877662 1222 222 22211
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhcc----------
Q 005409 342 YD-FRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEI---------- 410 (698)
Q Consensus 342 ~~-~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~---------- 410 (698)
-+ .++..|++.++++|+++|++|++|+.++.+...++.+ +.+.+..+.+..++..++++.+++..|..
T Consensus 328 ~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~ 406 (762)
T KOG0474|consen 328 GPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSI 406 (762)
T ss_pred CccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCc
Confidence 11 2467899999999999999999999997665444333 33333334444445555555555544310
Q ss_pred -------cc--Cc-H------------HHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhh
Q 005409 411 -------LY--WG-F------------ENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGA 468 (698)
Q Consensus 411 -------~g--~G-~------------~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA 468 (698)
+. .| | +.+..++++++ +.++...|+++++..++++..|+|...|.|.|.|++.+||
T Consensus 407 ~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GA 484 (762)
T KOG0474|consen 407 TEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGA 484 (762)
T ss_pred ccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhH
Confidence 01 11 3 34556666653 5677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 005409 469 ATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWF 548 (698)
Q Consensus 469 ~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v 548 (698)
+.||++|.++...+ .++||.||++||||+++|++||++|..||++|+| +..+++|+|++.++|+++
T Consensus 485 a~GRlvg~~l~~~~-------------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~V 550 (762)
T KOG0474|consen 485 AYGRLVGMLLGSYT-------------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTV 550 (762)
T ss_pred HHHHHHHHHHHHhh-------------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHH
Confidence 99999999987542 4689999999999999999999999999999999 677899999999999999
Q ss_pred hhccccccchhhhhHhhhhc----cc------cccccccccccccccccch----hhhccc-cccccccccc--------
Q 005409 549 TSGQMRRRDVKETKVAVHAN----TN------RKRQFEIYTSRTRGLSSSD----LLAEEE-PYAINLCEVE-------- 605 (698)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~~~l~~~~----lL~~~~-~~~~~l~~v~-------- 605 (698)
.+. +|+.+||.....+.. .+ -.+..++++.....+...+ +++... ..|.++|.++
T Consensus 551 GD~--FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~ 628 (762)
T KOG0474|consen 551 GDS--FNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAG 628 (762)
T ss_pred Hhh--hhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccch
Confidence 986 488999987543211 00 0011111111111000000 000000 0111111111
Q ss_pred -------------------------------------------cccccccchhhhhhhhccccchhccccCceEEcCCCC
Q 005409 606 -------------------------------------------SSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTL 642 (698)
Q Consensus 606 -------------------------------------------~~l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~ 642 (698)
.....+|....+++....++...+|.+.+++++++++
T Consensus 629 ~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mS 708 (762)
T KOG0474|consen 629 RLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMS 708 (762)
T ss_pred hhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccc
Confidence 0122333333334444568889999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhhhhccCccccccCC
Q 005409 643 LIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKNVEWGE 697 (698)
Q Consensus 643 l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~~~~~~v~ev~~~~ 697 (698)
+..+...+++-..+++.||++.++.+|++||+|+.+... ......+++..+++
T Consensus 709 l~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~~--l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 709 LAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYRI--LGLEPHVDELKMGK 761 (762)
T ss_pred hHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHHH--hccccccccccccc
Confidence 999999999999999999999899999999999987642 22234455655543
No 4
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-61 Score=521.81 Aligned_cols=501 Identities=25% Similarity=0.288 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------------------------------CCcccccCCCchhHHHH
Q 005409 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYG------------------------------GASWLREKPIPAIWIRV 144 (698)
Q Consensus 95 a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~w~~~ 144 (698)
.+++|..+|..+.+.+...+| |++-+..+.+ -..|. ......|.++
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~--~~~~~~~l~y 133 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWT--GHYIVSYLIY 133 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCC--CcchHHHHHH
Confidence 478888899888888888887 4332211100 00111 0111356555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHH
Q 005409 145 VLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLK 224 (698)
Q Consensus 145 ~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k 224 (698)
.+....-.++...+.+.. .+..-|+||||+|...-. +-.+.++..++++.|
T Consensus 134 ~~~al~fa~la~~lv~~~----AP~A~gSGIpEIK~ilSG-------------------------f~~~~~lg~~tl~iK 184 (696)
T KOG0475|consen 134 VLWALLFAFLAVSLVKVV----APYACGSGIPEIKTILSG-------------------------FIIRGFLGKWTLLIK 184 (696)
T ss_pred HHHHHHHHHHHHHHhhhe----ehhhhcCCCccceeeecc-------------------------chhhhhhhHHHHhhh
Confidence 555444455454444322 345667889999975321 112447788899999
Q ss_pred HHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhcC---CChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCc
Q 005409 225 AVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSS 301 (698)
Q Consensus 225 ~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~~~---~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~ 301 (698)
.++..++++||+|+|||||+||++.++|+.++++|+ .++..+|+.+++++|||+|++||||+||++|++|++. +++
T Consensus 185 sVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~-~~f 263 (696)
T KOG0475|consen 185 SVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS-YYF 263 (696)
T ss_pred hhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh-hcC
Confidence 999999999999999999999999999999999885 6778899999999999999999999999999999997 333
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhh---hcCCCCccccccCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005409 302 AADSSASLAYTTSMVILSAVIASVVSEV---GLGSEPAFKVPEYDF-RSPGELPLYLLLGVLCGLISLTLSRCTTYMLAI 377 (698)
Q Consensus 302 ~~~~~~~~~~~~~~~~~aav~a~~v~~~---~~g~~~~f~~~~~~~-~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~ 377 (698)
. .+ ..+..++++++|..+.+. +-++++.+..++|+. |++.|++.|+++|++||+.|.+|.|++.++.+.
T Consensus 264 p------~k-tlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~ 336 (696)
T KOG0475|consen 264 P------LK-TLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRF 336 (696)
T ss_pred C------cc-chHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2 12 233456777777777664 334456666667764 478999999999999999999999999887766
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCcccc---------HHHHHHHHHHHHHHHH
Q 005409 378 VDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT---------ADMLLQLVAAKIVATS 448 (698)
Q Consensus 378 ~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~s---------~~~l~~~~~~K~l~t~ 448 (698)
++.. .....+.+.+++++++++++.++.|++..++.+.++.+++.++..++.+ ...|+...++|+++|+
T Consensus 337 rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ 414 (696)
T KOG0475|consen 337 RKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTI 414 (696)
T ss_pred cchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 5544 2334556788999999999999999999999999999999886544444 5567788899999999
Q ss_pred HhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005409 449 LCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFEL 528 (698)
Q Consensus 449 lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~El 528 (698)
+|+|++.|+|+|+||+++||..|+++|.++...++. |.+.+...+++.|+.||++||||.++|+||+|+|.+||+||+
T Consensus 415 ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFEL 492 (696)
T KOG0475|consen 415 FTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFEL 492 (696)
T ss_pred hhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeec
Confidence 999999999999999999999999999888777765 334443456889999999999999999999999999999999
Q ss_pred hcChhhHHHHHHHHHHHHHHhhccccccchhhhhHhhhhccccccccccccccccccccchhhhcccccccccccccccc
Q 005409 529 TQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSL 608 (698)
Q Consensus 529 tg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~lL~~~~~~~~~l~~v~~~l 608 (698)
||++++++|+|+|+++++|+.+.+- .+.+||+....++... ++.++
T Consensus 493 TG~l~~IlPlm~av~~SkwI~d~~g-k~gIyda~I~~ng~P~--------------l~~k~------------------- 538 (696)
T KOG0475|consen 493 TGALNYILPLMLAVMISKWIGDGLG-KTGIYDAHIELNGYPF--------------LDSKS------------------- 538 (696)
T ss_pred cCcceeHHHHHHHHHHHHHHHhccc-cchHHHHHHHhcCCCC--------------ccccc-------------------
Confidence 9999999999999999999999864 5559987765332110 00000
Q ss_pred ccccchhhhhhhhccccchhccccC--ceEEcCC-CCHHHHHHHHHHcCCCEEEEEc--cCCeEEEEEeHHHHHHHHHH
Q 005409 609 CIDDWNLEVEELKRRVFVSEVMRTR--YVTVLMT-TLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 609 ~~~d~~~~~~~~~~~i~v~dvM~~~--~~~v~~~-~~l~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~dl~~~l~~ 682 (698)
+.+ .....++.+.++.+ ..+++.+ ++++|...+|.+++++.+|||- +.++++|+|.|+|+.-.+..
T Consensus 539 -------e~~-~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ 609 (696)
T KOG0475|consen 539 -------EFS-STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILN 609 (696)
T ss_pred -------ccc-cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhh
Confidence 000 00111222222223 4555555 9999999999999999899884 34689999999999876653
No 5
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.6e-59 Score=512.79 Aligned_cols=384 Identities=26% Similarity=0.356 Sum_probs=319.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhc
Q 005409 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (698)
Q Consensus 99 Gvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v 178 (698)
|+++|+++.+|+..+|+++++++..... .+... ....+|++.+++|++||+++++++++.. . .|++++|+
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ggl~~~l~~~~~~----~--~g~gi~~v 70 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEG---SFLTG-VAAVSPIRRALSLTVGGLIAGLGWYLLR----R--KGKKLVSI 70 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccc---cchhh-hccCChHHHHHHHHHHHHHHHHHHHHHh----c--cCCCcccH
Confidence 6889999999999999999998875321 11111 1112344567889999999998865432 1 25568877
Q ss_pred cccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 005409 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (698)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~ 258 (698)
+...... ++ ...++.+.|.+++++++++|+|+|||||++|+|+++|++++|+
T Consensus 71 ~~~~~~~---------------------------~~-~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~ 122 (388)
T cd01033 71 KQAVRGK---------------------------KR-MPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDW 122 (388)
T ss_pred HHHhcCC---------------------------CC-CCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHH
Confidence 6532110 11 1123456899999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005409 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (698)
Q Consensus 259 ~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~g~~~~f~ 338 (698)
+++++++||.+++||+|||+|++||||++|++|++|++++++. .+.+.+ +++++++|+++++.+.|++|.|.
T Consensus 123 ~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~-------~~~~~~-~~~as~~a~~v~~~~~g~~~~f~ 194 (388)
T cd01033 123 LGLTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTIS-------LRSVVA-ALATSAIAAAVASLLKGDHPIYD 194 (388)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcc-------HHHHHH-HHHHHHHHHHHHHHhCCCCceee
Confidence 9999999999999999999999999999999999999987533 345555 68999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHH
Q 005409 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (698)
Q Consensus 339 ~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i 418 (698)
+++++. ++.++++++++|++||+++.+|++++.++++.+ ++. .+.++++.+++++++++.+++|+.+|+|++.+
T Consensus 195 ~~~~~~-~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~----~~~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i 268 (388)
T cd01033 195 IPPMQL-STPLLIWALLAGPVLGVVAAGFRRLSQAARAKR----PKG-KRILWQMPLAFLVIGLLSIFFPQILGNGRALA 268 (388)
T ss_pred cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccc-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 887654 477889999999999999999999987765433 222 23456788999999999999999999999999
Q ss_pred HHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005409 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (698)
Q Consensus 419 ~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~ 498 (698)
+.+++++ .+...++.++++|+++|++|+|+|.+||.|+|++++||++|+++|++++..+|+ .+
T Consensus 269 ~~~~~~~-----~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~------------~~ 331 (388)
T cd01033 269 QLAFSTT-----LTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP------------LS 331 (388)
T ss_pred HHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc------------cc
Confidence 9998875 355566778899999999999999999999999999999999999998875543 35
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHhhc
Q 005409 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-DYRIVLPLLGAVGLSSWFTSG 551 (698)
Q Consensus 499 p~~~alvGaaA~la~v~~aPls~~vi~~Eltg-~~~~llPlmiav~va~~v~~~ 551 (698)
+..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.
T Consensus 332 ~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~ 385 (388)
T cd01033 332 IAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRF 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 999999999999999988753
No 6
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.5e-57 Score=507.22 Aligned_cols=414 Identities=25% Similarity=0.390 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 005409 93 ISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDD 172 (698)
Q Consensus 93 ~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g 172 (698)
++++++|+++|+++.+|+.+++++++++++..... . ..+ ...|...++++.+++++.+++.+.. .+...|
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~~~~~~~i~~~l~~~~----~p~~~G 71 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV-A----DNG-LLLWIVAFLISAVLAMIGYFLVRRF----APEAGG 71 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----ccc-hHHHHHHHHHHHHHHHHHHHHHHhc----CcccCC
Confidence 57899999999999999999999999987643211 0 000 0112222334445555555554322 233456
Q ss_pred cchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHH
Q 005409 173 DDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIA 252 (698)
Q Consensus 173 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig 252 (698)
+|++|++...... ++....++...|++++++++++|+|+|||||++|+|+++|
T Consensus 72 sGi~~i~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig 124 (438)
T PRK05277 72 SGIPEIEGALEGL---------------------------RPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIG 124 (438)
T ss_pred CCHHHHHHHHcCC---------------------------CccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Confidence 7788887532110 0111123456899999999999999999999999999999
Q ss_pred HHHHhhcCC-ChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhc
Q 005409 253 KGVGNLFDR-RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGL 331 (698)
Q Consensus 253 ~~l~~~~~~-~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~ 331 (698)
++++++++. +++++|.+++||+|||++++||||++|++|++|++..++. +..+++.+ +++++++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~-----~~~~~~~~-~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 125 RMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFR-----YSLISIKA-VFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhcc-----ccHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999998 8889999999999999999999999999999998864321 12234555 6889999999999989
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccc
Q 005409 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (698)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~ 411 (698)
|+++.|.++.++..++.+++.++++|++||++|.+|++++.+.+++++++.++...+..+...++|++++++.+++|+..
T Consensus 199 g~~~~~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~ 278 (438)
T PRK05277 199 GEQAVIEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAV 278 (438)
T ss_pred CCCceEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999988876655678899999999999999999999998887766654332222223345678888999999999999
Q ss_pred cCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcccc
Q 005409 412 YWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (698)
Q Consensus 412 g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~ 491 (698)
|+|++.++.+++++ .+...++.++++|+++|++|+|+|++||.|+|++++||++|+++|.+++..+|.
T Consensus 279 g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~------- 346 (438)
T PRK05277 279 GGGFNLIPIALAGN-----FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQ------- 346 (438)
T ss_pred CChHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------
Confidence 99999999988764 455567778899999999999999999999999999999999999999887764
Q ss_pred ccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhHhh
Q 005409 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAV 565 (698)
Q Consensus 492 ~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~~ 565 (698)
...+|..|+++||+|++++++|+|+|++++++|+||+++.++|+|+++++|+++++. ++++++|+...+.
T Consensus 347 ---~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~-~~~~~iy~~~l~~ 416 (438)
T PRK05277 347 ---YHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQF-LGGKPIYSALLER 416 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-hCCCChHHHHHHH
Confidence 235689999999999999999999999999999999999999999999999988765 6778999987654
No 7
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=3.5e-58 Score=511.57 Aligned_cols=409 Identities=22% Similarity=0.291 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhc
Q 005409 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (698)
Q Consensus 99 Gvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v 178 (698)
|+++|+++..++.+++|+.+++.+.. .|..+++.+++++++++++.+.. .+...|+||||+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~~~l~~~~----~p~a~GsGIp~v 61 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC---------------NYIIYVLLALLFAFIAVLLVKVV----APYAAGSGIPEI 61 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHhc----CccccCCCHHHH
Confidence 78999999999999999998875431 23335677888889888886432 334567789999
Q ss_pred cccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 005409 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (698)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~ 258 (698)
+.... ++ +..+....++.+.|++++++++++|+|+|||||++|+|+++|++++|+
T Consensus 62 ~~~l~--g~-----------------------~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~ 116 (445)
T cd03684 62 KTILS--GF-----------------------IIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRL 116 (445)
T ss_pred HHHHc--Cc-----------------------cccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHH
Confidence 75311 11 011222345678999999999999999999999999999999999998
Q ss_pred cC---CChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhh--c--
Q 005409 259 FD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG--L-- 331 (698)
Q Consensus 259 ~~---~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~--~-- 331 (698)
++ .++++||++++||+|||++|+||||++|++|++|++..++. .+++.+ +++++++|+++.+.. +
T Consensus 117 ~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~-------~~~l~~-~~~as~~a~~v~~~~~~~~~ 188 (445)
T cd03684 117 FPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFP-------LKTLWR-SFFCALVAAFTLKSLNPFGT 188 (445)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhcc-------HHHHHH-HHHHHHHHHHHHHHhcccCC
Confidence 74 58899999999999999999999999999999999976432 345554 788999999988864 2
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccc
Q 005409 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (698)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~ 411 (698)
++...|.++....++..|+++++++|++||++|.+|++++.++++.+++... +.++++++++++++++.+.++.|+..
T Consensus 189 ~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 189 GRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred CCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc
Confidence 3334555433223356789999999999999999999999887766554421 23567889999999999999999999
Q ss_pred cCcHHHHHHHHccCCC--------------Ccc--ccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHH
Q 005409 412 YWGFENVDILLESRPF--------------VKG--LTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYG 475 (698)
Q Consensus 412 g~G~~~i~~ll~~~~~--------------~~~--~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g 475 (698)
|+|++.++.++++... .++ .+...++.++++|+++|++|+++|+|||+|+|++++||++|+++|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 9999999998865210 000 123456677889999999999999999999999999999999999
Q ss_pred HHHHHhh---hcCCCcccc----ccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 005409 476 KFINFAI---AQSNPTIHF----SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWF 548 (698)
Q Consensus 476 ~~~~~~~---p~~~~~~~~----~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v 548 (698)
.+++... |+. .++ +..+..+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++
T Consensus 347 ~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~v 423 (445)
T cd03684 347 ILVEQLAYSYPDS---IFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWV 423 (445)
T ss_pred HHHHHHHhhCCcc---cccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHH
Confidence 9987653 321 000 001235789999999999999999999999999999999999999999999999998
Q ss_pred hhccccccchhhhhHhh
Q 005409 549 TSGQMRRRDVKETKVAV 565 (698)
Q Consensus 549 ~~~~~~~~~~~~~~~~~ 565 (698)
++ .+.++++||.....
T Consensus 424 s~-~~~~~siY~~~l~~ 439 (445)
T cd03684 424 AD-AIGKEGIYDAHIHL 439 (445)
T ss_pred HH-HhCCCCHHHHHHHh
Confidence 86 45678999977543
No 8
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.3e-57 Score=502.94 Aligned_cols=400 Identities=27% Similarity=0.444 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhh
Q 005409 98 VGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQ 177 (698)
Q Consensus 98 vGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~ 177 (698)
+|+++|+++.+|+.+++++++++++..+.. ... ...|..++++|.++|++++++.++. .|+ ..|+|+++
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~g~~~~~l~~~~--~p~--~~g~G~~~ 69 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-----ANN--PPLLLVLPLISAVLGLLAGWLVKKF--APE--AKGSGIPQ 69 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-----ccc--cHHHHHHHHHHHHHHHHHHHHHHhc--CCc--cCCCCHHH
Confidence 589999999999999999999988753211 011 1234345677888888888875432 223 34567888
Q ss_pred ccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh
Q 005409 178 VQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN 257 (698)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~ 257 (698)
++.....+ .+....++.+.|++++++++++|+|+|||||++|+|+++|+++++
T Consensus 70 v~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~ 122 (402)
T cd01031 70 VEGVLAGL---------------------------LPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK 122 (402)
T ss_pred HHHHHcCC---------------------------CCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 87532110 001123456799999999999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 005409 258 LFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAF 337 (698)
Q Consensus 258 ~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~g~~~~f 337 (698)
+++.+++++|.+++||+|||++++||||++|++|++|++..++. .+.+.+ +++++++|+++++.+.|+++.|
T Consensus 123 ~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~-------~~~~~~-~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 123 WFKTSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFS-------PLALLT-ALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCC-------HHHHHH-HHHHHHHHHHHHHHHcCCCceE
Confidence 99998899999999999999999999999999999998865432 234444 6889999999999989999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHH
Q 005409 338 KVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFEN 417 (698)
Q Consensus 338 ~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~ 417 (698)
.+++++.+++.|+++++++|++||++|.+|++...+..+++++.. +.++++++++++++++++.++.|+.+|+|++.
T Consensus 195 ~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~ 271 (402)
T cd01031 195 SIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGL 271 (402)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888776667889999999999999999999999887766554431 34567889999999999999999999999999
Q ss_pred HHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcccccccccc
Q 005409 418 VDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVA 497 (698)
Q Consensus 418 i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~ 497 (698)
++.+++++ .+...++.+++.|+++|++|+++|++||.|+|++++||++|+++|++++..+|. ...
T Consensus 272 i~~~~~~~-----~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~----------~~~ 336 (402)
T cd01031 272 ILSLAGGN-----FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPI----------PIS 336 (402)
T ss_pred HHHHHcCC-----chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccc
Confidence 99888654 456677778899999999999999999999999999999999999999877664 235
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhh
Q 005409 498 SPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562 (698)
Q Consensus 498 ~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~ 562 (698)
+|+.|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+++++. ++.+++||..
T Consensus 337 ~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~-~~~~siY~~~ 400 (402)
T cd01031 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADL-LGGKPIYEAL 400 (402)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCChhHHH
Confidence 799999999999999999999999999999999999999999999999998764 5678888865
No 9
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-56 Score=491.50 Aligned_cols=409 Identities=31% Similarity=0.459 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005409 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (698)
Q Consensus 90 ~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~ 169 (698)
..+..+.++|+++|+....++...++.+...... +. ......+|+ ..++|+.+|++++. .++....|+.
T Consensus 21 ~~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~-~~l~~~~~gl~~g~-~~~~~~~p~~- 89 (443)
T COG0038 21 VLIGIAAALGVIVGLFAVALDLALLLLGRLRGGL-------LS-AAQAPGPWL-LPLVPALGGLLVGA-LLVYKFAPEA- 89 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------cc-ccccchhHH-HHHHHHHHHHHHHH-HHHHHhCccc-
Confidence 3445555666666665555555555444332111 00 011112454 57888999999994 2222223343
Q ss_pred CCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 005409 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (698)
Q Consensus 170 g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa 249 (698)
.|+|++|+++.... .+....++...+|.+++.+++++|+|+|||||++|+|+
T Consensus 90 -~g~Gi~~~i~a~~~---------------------------~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga 141 (443)
T COG0038 90 -RGSGIPQAIEALHG---------------------------RKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGA 141 (443)
T ss_pred -cCCChhHHHHHHhc---------------------------CCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHH
Confidence 34668888754211 01112233456799999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhh
Q 005409 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (698)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~ 329 (698)
++|+.++|+++.++++||.+++||+|||+|++||||++|++|++|+++.++ ++.+++.| ++++++++..+.+.
T Consensus 142 ~~g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~------~~~~~l~p-~~vaa~va~~v~~~ 214 (443)
T COG0038 142 AIGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF------LEYRALVP-VLVAAVVALLVAGL 214 (443)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc------ccHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763 22456666 68999999999998
Q ss_pred hcCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhc
Q 005409 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE 409 (698)
Q Consensus 330 ~~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~ 409 (698)
+.+.++.+.+++++..++++++.++++|+++|++|.+|.++.... ++++++.+.++++++++++++++.+.+++|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~g~~~l~~P~ 290 (443)
T COG0038 215 FGGPHFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALS----RRFFRRLPLPPLLRPALGGLLVGALGLLFPE 290 (443)
T ss_pred cCCCCceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcchHHHHHHHHHHHHHHHHHhchh
Confidence 888777777766666678999999999999999999999987544 4556666677889999999999999999999
Q ss_pred cccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcc
Q 005409 410 ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489 (698)
Q Consensus 410 ~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~ 489 (698)
.+|+|++.++...+++. ....++.+++.|+++|++|+|+|.|||+|+|++++||++|.++|.+++..+|.
T Consensus 291 ~lg~G~~~~~~~~~~~~-----~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~----- 360 (443)
T COG0038 291 VLGNGYGLIQLALAGEG-----GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPP----- 360 (443)
T ss_pred hhCCCccHHHHHHccCc-----cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCc-----
Confidence 99999999999888762 23226778899999999999999999999999999999999999999887664
Q ss_pred ccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhHh
Q 005409 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVA 564 (698)
Q Consensus 490 ~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~ 564 (698)
...++..|+++||+|++++++|+|+|++++++||||+++.++|+|+++++++++++. +..+++|+....
T Consensus 361 -----~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~-~~~~~~~~~~~~ 429 (443)
T COG0038 361 -----SILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRL-LGGRPIYTQLLA 429 (443)
T ss_pred -----cccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHH-hCCCcHHHHHHH
Confidence 134678999999999999999999999999999999999999999999999988866 445777776543
No 10
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.5e-56 Score=500.72 Aligned_cols=426 Identities=21% Similarity=0.290 Sum_probs=306.1
Q ss_pred CccccccCCCCCchhhccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 005409 55 KSLRLRPLGALPENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLRE 134 (698)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~ 134 (698)
||.||.+ -||+.+|+|.....-.. .....+..|+.++++|+++|+++++|+.++++++++++.... ++..+
T Consensus 1 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~----~~~~~ 71 (466)
T cd03685 1 ESLDYEV----IENDLFREEWRKRKKKQ-VLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVK----NYIEK 71 (466)
T ss_pred CCCCccc----cccHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcc
Confidence 4677777 66776665433333111 111234556788999999999999999999999998765321 00111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccc
Q 005409 135 KPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDY 214 (698)
Q Consensus 135 ~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 214 (698)
.+....|..+++.|+++|++++++.++. .+...|+|+||++.. .++. +.| +
T Consensus 72 ~~~~~~~~~~~~~~~~~~li~~~l~~~~----~p~a~GsGip~v~~~--l~g~------------------~~~-----~ 122 (466)
T cd03685 72 GRLFTAFLVYLGLNLVLVLVAALLVAYI----APTAAGSGIPEVKGY--LNGV------------------KIP-----H 122 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHHHHH--HcCc------------------Ccc-----c
Confidence 1111234434578899999999986532 233457789998752 1110 111 1
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh-----------cC--CChhhHHHHHHhhhhHhHHHH
Q 005409 215 LKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL-----------FD--RRPRRKVSLVAAGSAAGISSG 281 (698)
Q Consensus 215 ~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~-----------~~--~~~~~~r~l~~~G~aAgiaa~ 281 (698)
....++.+.|++++++++++|+|+|||||++|+||++|++++|+ ++ .+++++|++++||+|||+|++
T Consensus 123 ~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaa 202 (466)
T cd03685 123 ILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAA 202 (466)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhc
Confidence 22345667999999999999999999999999999999999973 22 367889999999999999999
Q ss_pred hhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhh---cCC--CCcc--------cccc-CCCCCC
Q 005409 282 FNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG---LGS--EPAF--------KVPE-YDFRSP 347 (698)
Q Consensus 282 F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~---~g~--~~~f--------~~~~-~~~~~~ 347 (698)
||||++|++|++|++...+.. +.. ...++++++|+++++.+ .+. .+.| ..+. ...+++
T Consensus 203 F~APl~G~lFa~E~l~~~~~~-------~~~-~~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (466)
T cd03685 203 FGAPVGGVLFSLEEVASFWNQ-------ALT-WRTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTY 274 (466)
T ss_pred cCCCcceeeeeeehhhhhcch-------hHH-HHHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccH
Confidence 999999999999998654321 111 22345555555554432 111 1222 2221 122356
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCC
Q 005409 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPF 427 (698)
Q Consensus 348 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~ 427 (698)
.|+++++++|++||++|.+|++.+.++++++++..+. +++.+ ++++++++++...++.
T Consensus 275 ~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~-~l~~~lv~~~~~~~~~------------------ 332 (466)
T cd03685 275 FELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHK---GKLLK-VLEALLVSLVTSVVAF------------------ 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchhH-HHHHHHHHHHHHHHHH------------------
Confidence 7899999999999999999999998876655543221 22222 3455555544333221
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHH
Q 005409 428 VKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGM 507 (698)
Q Consensus 428 ~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGa 507 (698)
...+..++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++..+|. ...+|+.|+++||
T Consensus 333 -----~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~----------~~~~~~~~aliGm 397 (466)
T cd03685 333 -----PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGF----------TSIDPGLYALLGA 397 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccc----------cCCCchHHHHHHH
Confidence 0134556678999999999999999999999999999999999998876543 2357899999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhHhh
Q 005409 508 AATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAV 565 (698)
Q Consensus 508 aA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~~ 565 (698)
+|++++++|+|+|+++|++|+||++++++|+|+++++|+++++. + ++++||...+.
T Consensus 398 aa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~-~-~~siY~~~l~~ 453 (466)
T cd03685 398 AAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDY-F-NEGIYDIIIQL 453 (466)
T ss_pred HHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHH-h-CCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999876 3 47999987653
No 11
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-55 Score=484.87 Aligned_cols=387 Identities=28% Similarity=0.364 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhccccC
Q 005409 103 GIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKS 182 (698)
Q Consensus 103 G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v~~~~ 182 (698)
|+++..|+.+++++++++.+... . .+|+.++++|.+|+++++++.++ .+...|+||||++...
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~p~~~~~~~~~~~~~-----~p~~~gsGi~~v~~~~ 63 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA---------T---HPWLPLLLTPAGFALIAWLTRRF-----FPGAAGSGIPQVIAAL 63 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH---------h---chHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHH
Confidence 57788999999999998774321 0 23543567788888777776542 2234467899987532
Q ss_pred CCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhcCCC
Q 005409 183 YPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRR 262 (698)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~ 262 (698)
..+.. . +..+....++.+.|++++++++++|+|+|||||++|+|+++|++++|++++.
T Consensus 64 ~~~~~-----------------~-----~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~ 121 (390)
T cd01034 64 ELPSA-----------------A-----ARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKW 121 (390)
T ss_pred ccccc-----------------c-----cccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccC
Confidence 11000 0 0111233456789999999999999999999999999999999999999985
Q ss_pred -hhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 005409 263 -PRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFKVPE 341 (698)
Q Consensus 263 -~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~g~~~~f~~~~ 341 (698)
++++|.+++||+|||+|++||||++|++|++|++..++. .+...+ +++++++|+++++.++|+++.|.+++
T Consensus 122 ~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~-------~~~~~~-~~~~~~~a~~~~~~~~g~~~~f~~~~ 193 (390)
T cd01034 122 GGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFE-------LRFSGL-VLLAVIAAGLVSLAVLGNYPYFGVAA 193 (390)
T ss_pred chHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhh-------HHHHHH-HHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 789999999999999999999999999999999976432 233343 57788888999998899999998876
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCchhHHHHHHHHHHHHHHHHhh-ccccCcHHHHH
Q 005409 342 YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQK-DNGIPKAVFPVMGGLAVGLIALMFP-EILYWGFENVD 419 (698)
Q Consensus 342 ~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~-~~~~~~~~~~~lggllvg~i~~~~P-~~~g~G~~~i~ 419 (698)
.+..++.++++++++|++||++|.+|++...++.+.+++..+ ..+.++++++.++|++++++.+++| +.+|+|++.++
T Consensus 194 ~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~ 273 (390)
T cd01034 194 VALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQAR 273 (390)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHH
Confidence 655567788999999999999999999999888777666432 2233445677888899998888875 78899999999
Q ss_pred HHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccch
Q 005409 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (698)
Q Consensus 420 ~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p 499 (698)
.+++++. . ....++++|+++|++|+++|+|||+|+|++++||++|++++++++. .+|
T Consensus 274 ~~~~~~~-----~--~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~----------------~~~ 330 (390)
T cd01034 274 AALEGGG-----G--LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS----------------VSQ 330 (390)
T ss_pred HHHhCCC-----c--ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC----------------CCc
Confidence 9887642 1 2234578999999999999999999999999999999999986531 368
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhh
Q 005409 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (698)
Q Consensus 500 ~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~ 560 (698)
..|+++||+|++++++|+|+|++++++|+||+++.++|+|+++++|+++++. ++.+++||
T Consensus 331 ~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~-~~~~~iY~ 390 (390)
T cd01034 331 GALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRL-VCPEPLYH 390 (390)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-hCCCCCCC
Confidence 8999999999999999999999999999999999999999999999988865 46677775
No 12
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=4.1e-55 Score=475.28 Aligned_cols=350 Identities=35% Similarity=0.571 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHH
Q 005409 150 CGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAAC 229 (698)
Q Consensus 150 ~ggl~vgll~~~~~~~~~~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ 229 (698)
++|+++++++++.. +...|+||||+++..... +.....++.+.|+++++
T Consensus 1 ~~~~~~~~l~~~~~----p~~~g~Gi~~v~~~~~~~---------------------------~~~~~~~~~~~k~~~~~ 49 (355)
T PF00654_consen 1 IGGLLSGLLWKKFA----PEAAGSGIPEVKAALRGK---------------------------SGRLPFRTLPVKFVGSI 49 (355)
T ss_dssp -HHHHHHHHHHHC-----GGGSB-SHHHHHHHCTTS---------------------------S---HHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHC----CccCCCCHHHHHHHHhCC---------------------------CCCCCHHHHHHHHHHHH
Confidence 46788888865431 223467899998642211 10133456789999999
Q ss_pred HHHhcCCccCCchhHHHHHHHHHHHHHhhcCCChhh-HHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhh
Q 005409 230 ITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSAS 308 (698)
Q Consensus 230 ltl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~-~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~ 308 (698)
+++++|+|+|||||++|+|+++|++++|+++.++++ +|.+++||+|||+|++||||++|++|++|++.+++.
T Consensus 50 ~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~------- 122 (355)
T PF00654_consen 50 LSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFS------- 122 (355)
T ss_dssp HHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCS-------
T ss_pred HHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeecccc-------
Confidence 999999999999999999999999999999977767 888999999999999999999999999999765543
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCCccc-cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005409 309 LAYTTSMVILSAVIASVVSEVGLGSEPAFK-VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI 387 (698)
Q Consensus 309 ~~~~~~~~~~aav~a~~v~~~~~g~~~~f~-~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~ 387 (698)
.+.+.+ +++++++|+++++.+.|+++.|. +|+...+++.|+++++++|++||++|.+|++...++.+.+++.. +.+.
T Consensus 123 ~~~~~~-~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~ 200 (355)
T PF00654_consen 123 VRLLLP-ALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKI 200 (355)
T ss_dssp TTTHHH-HHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred chhhHH-HHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 245555 68999999999999999999998 87665667899999999999999999999999999888777664 3334
Q ss_pred chhHHHHHHHHHHHHHHHHhhc--cccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHH
Q 005409 388 PKAVFPVMGGLAVGLIALMFPE--ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLF 465 (698)
Q Consensus 388 ~~~~~~~lggllvg~i~~~~P~--~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~ 465 (698)
+++++++++|++++++.+++|+ .+|+|++.++.++++++ ..++...++.+++.|+++|.+|+++|++||.|+|+++
T Consensus 201 ~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~ 278 (355)
T PF00654_consen 201 PPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLF 278 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHH
Confidence 5567999999999999999999 99999999999997752 1356778888999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 005409 466 IGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLS 545 (698)
Q Consensus 466 iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va 545 (698)
+|+++|++++.+++..+|+. ...+|+.|+++||+|++++++|+|++++++++|+||++++++|+|+++++|
T Consensus 279 iGa~~G~~~~~~~~~~~~~~---------~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a 349 (355)
T PF00654_consen 279 IGAALGRLFGALLGSFFPGI---------SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVA 349 (355)
T ss_dssp HHHHHHHHHHHHHHHH-GGG----------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCc---------CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999887751 123799999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 005409 546 SWFTS 550 (698)
Q Consensus 546 ~~v~~ 550 (698)
+++++
T Consensus 350 ~~v~~ 354 (355)
T PF00654_consen 350 YLVAR 354 (355)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98764
No 13
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=5.4e-55 Score=482.81 Aligned_cols=388 Identities=23% Similarity=0.275 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhc
Q 005409 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (698)
Q Consensus 99 Gvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v 178 (698)
|+++|+++.+|+.++++.++++...+.....+ ....|..+++.|++++++++++.++. .+...|+||||+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~----~p~a~GsGIp~v 70 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGS------YLLGYLMWVLWSVVLVLISSGICLYF----APQAAGSGIPEV 70 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHH
Confidence 67888999999999999988876543211110 01233334677888888877775432 234556789998
Q ss_pred cccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 005409 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (698)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~ 258 (698)
+.... + .+.| +....++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 71 ~~~l~--g------------------~~~~-----~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~ 125 (416)
T cd01036 71 MAYLN--G------------------VHLP-----MYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQG 125 (416)
T ss_pred HHHHc--C------------------Cccc-----ccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 85311 0 0111 223345678999999999999999999999999999999999997
Q ss_pred cC-------------CChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHH
Q 005409 259 FD-------------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (698)
Q Consensus 259 ~~-------------~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~ 325 (698)
++ .++++||++++||+|||++++||||++|++|++|++..++. .++.. ++++++++|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~-------~~~~~-~~~~as~~a~~ 197 (416)
T cd01036 126 RSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFP-------VRLAW-RVFFAALVSAF 197 (416)
T ss_pred cccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhcccc-------HHHHH-HHHHHHHHHHH
Confidence 64 46788999999999999999999999999999999976432 23444 46889999999
Q ss_pred HHhhhcCCCCccc--------------cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchh
Q 005409 326 VSEVGLGSEPAFK--------------VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKA 390 (698)
Q Consensus 326 v~~~~~g~~~~f~--------------~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~-~~~~~~ 390 (698)
+++...+..+.+. +++...++..|+++++++|++||++|.+|++++.++.+++++..+. .+..++
T Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (416)
T cd01036 198 VIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRV 277 (416)
T ss_pred HHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 9887766554332 2222223567899999999999999999999999888776654321 334567
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHH
Q 005409 391 VFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAAT 470 (698)
Q Consensus 391 ~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~ 470 (698)
+++.+++++++.+.+ ...++.+++.|+++|++|+++|+|||+|.|++++||++
T Consensus 278 ~~~~~~~~i~~~~~~---------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~ 330 (416)
T cd01036 278 LEPVLFTLIYSTIHY---------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAI 330 (416)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 889999999988765 12455678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhh
Q 005409 471 GMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (698)
Q Consensus 471 G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~ 550 (698)
|+++|.+++..+|+..+..+- ....+|+.|+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 331 G~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~ 408 (416)
T cd01036 331 GRLVGLLVHRIAVAGIGAESA--TLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVAD 408 (416)
T ss_pred HHHHHHHHHHHcccccccccc--CCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHH
Confidence 999999998877642111000 123678999999999999999999999999999999999999999999999999887
Q ss_pred ccccccchhh
Q 005409 551 GQMRRRDVKE 560 (698)
Q Consensus 551 ~~~~~~~~~~ 560 (698)
.+ . +++||
T Consensus 409 ~~-~-~siY~ 416 (416)
T cd01036 409 AF-C-ESLYH 416 (416)
T ss_pred hh-C-CCCCC
Confidence 64 3 68775
No 14
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=5e-54 Score=472.06 Aligned_cols=383 Identities=39% Similarity=0.599 Sum_probs=319.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhc
Q 005409 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (698)
Q Consensus 99 Gvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~i~~v 178 (698)
|+++|+++.+|+.++++.++++++..+.... ....+|+++++.|++|+++++++.++.+ . ..|+|++++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~v~l~~~~~~---~--~~g~G~~~v 69 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA------AGSLSPLYILLVPVIGGLLVGLLVRLLG---P--ARGHGIPEV 69 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc------cccccHHHHHHHHHHHHHHHHHHHHHhC---c--ccCCChHHH
Confidence 6889999999999999999999876542210 0112344467889999999999875432 1 345678887
Q ss_pred cccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 005409 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (698)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~l~~~ 258 (698)
+...... ++....++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 70 ~~~~~~~---------------------------~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~ 122 (383)
T cd00400 70 IEAIALG---------------------------GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRR 122 (383)
T ss_pred HHHHHhC---------------------------CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6431100 0011234567999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005409 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (698)
Q Consensus 259 ~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~g~~~~f~ 338 (698)
++.++.++|.+++||++||++++||||++|++|++|++..++. .+.+.+ +++++++++++++.+.++.+.|.
T Consensus 123 ~~~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~-------~~~~~~-~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 123 LRLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYS-------VASLIP-VLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-------HHHHHH-HHHHHHHHHHHHHHHcCCCCeee
Confidence 9998889999999999999999999999999999999976532 134444 68999999999999999989988
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHH
Q 005409 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (698)
Q Consensus 339 ~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i 418 (698)
++....++..++++++++|++||++|.+|+++..++++.+++ .+.++++++++++++++++.+++|+..|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~----~~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~ 270 (383)
T cd00400 195 VPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR----LPIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAI 270 (383)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 876555567889999999999999999999998876654443 2345678899999999999999999999999998
Q ss_pred HHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005409 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (698)
Q Consensus 419 ~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~ 498 (698)
+..++++ .+...++.+++.|+++|++|+++|++||.|+|++++||++|++++++++..+|. +..+
T Consensus 271 ~~~~~~~-----~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~----------~~~~ 335 (383)
T cd00400 271 LLALAGE-----LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPG----------LVAS 335 (383)
T ss_pred HHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCc----------ccCC
Confidence 8877654 355566778899999999999999999999999999999999999999877663 3457
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 005409 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSS 546 (698)
Q Consensus 499 p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~ 546 (698)
|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+
T Consensus 336 ~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 336 PGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999988763
No 15
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3.8e-54 Score=477.05 Aligned_cols=399 Identities=20% Similarity=0.262 Sum_probs=301.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 005409 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (698)
Q Consensus 92 ~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~ 171 (698)
|+..+++|+++|+++..++.+++++.+++....... .+++ ...|..+++.|++++++++++.++. .+...
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~----~p~a~ 71 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL-----TGNS-LLQYLVWVAYPVALVLFSALFCKYI----SPQAV 71 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccch-HHHHHHHHHHHHHHHHHHHHHHHhc----CCccC
Confidence 345679999999999999999999988765432211 0111 1233445678999899888886432 33456
Q ss_pred CcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHH
Q 005409 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (698)
Q Consensus 172 g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~i 251 (698)
|+||||++..... + +.| +....++.+.|++++++++++|+|+|||||++|+|+++
T Consensus 72 GsGIp~v~~~l~g--~------------------~~~-----~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i 126 (426)
T cd03683 72 GSGIPEMKTILRG--V------------------VLP-----EYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIV 126 (426)
T ss_pred CCCHHHHHHHHcC--C------------------Ccc-----ccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHH
Confidence 7789999642110 0 011 22334567899999999999999999999999999999
Q ss_pred HHHHHhhcC------CChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHH
Q 005409 252 AKGVGNLFD------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (698)
Q Consensus 252 g~~l~~~~~------~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~ 325 (698)
++.++|+++ .++++||++++||+|||+||+||||++|++|++|++..++. .+.+.+ ++++|++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~-------~~~~~~-~~i~s~~a~~ 198 (426)
T cd03683 127 AALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFA-------VRNYWR-GFFAATCGAF 198 (426)
T ss_pred HHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhcc-------HHHHHH-HHHHHHHHHH
Confidence 999999874 36678889999999999999999999999999999876533 244444 6788899888
Q ss_pred HHhhhc----CCCCc---ccccc--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCchhHHH
Q 005409 326 VSEVGL----GSEPA---FKVPE--YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD---NGIPKAVFP 393 (698)
Q Consensus 326 v~~~~~----g~~~~---f~~~~--~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~---~~~~~~~~~ 393 (698)
+++... ++.+. |..+. ...++..++++++++|++||++|.+|++.+.++.+++++..+. .+.++++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (426)
T cd03683 199 TFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYP 278 (426)
T ss_pred HHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHH
Confidence 776532 33332 32221 1123567899999999999999999999998887766554321 234567788
Q ss_pred HHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHH
Q 005409 394 VMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (698)
Q Consensus 394 ~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~ 473 (698)
++++++++.+. +| ...++.+.++|+++|++|+++|+|||+|.|++++||++|++
T Consensus 279 ~~~g~~~~~l~--~p------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~ 332 (426)
T cd03683 279 AIVALLTAVLT--FP------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRL 332 (426)
T ss_pred HHHHHHHHHHH--HH------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHH
Confidence 89998888653 45 12455678899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccc
Q 005409 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQM 553 (698)
Q Consensus 474 ~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~ 553 (698)
+|.+++.++|+.... ......+|+.|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+
T Consensus 333 ~g~~~~~~~p~~~~~---~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~- 407 (426)
T cd03683 333 VGEIMAVLFPEGIRG---GISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFL- 407 (426)
T ss_pred HHHHHHHHcCccccc---CCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhh-
Confidence 999998776621000 000235689999999999999999997765 699999999999999999999999988754
Q ss_pred cccchhhhhHhh
Q 005409 554 RRRDVKETKVAV 565 (698)
Q Consensus 554 ~~~~~~~~~~~~ 565 (698)
++++||...+.
T Consensus 408 -~~~iY~~~l~~ 418 (426)
T cd03683 408 -QPSIYDSIIKI 418 (426)
T ss_pred -CCCHHHHHHHh
Confidence 36999987653
No 16
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=483.69 Aligned_cols=494 Identities=18% Similarity=0.253 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHH-HHHHHHhhccC
Q 005409 92 IISSCLVGLLTGIGVVLFNKGVHEIRDF---FWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVS-ILNQLRYALSL 167 (698)
Q Consensus 92 ~~~a~lvGvl~G~~~~~f~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vg-ll~~~~~~~~~ 167 (698)
|+...++|++++++++.++..++..++. ++..+... ..++ .|.-+...|+.--++.+ +.+.+ .
T Consensus 96 W~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~-~~yl-------~yl~Wv~y~v~Li~fSA~f~h~i-----a 162 (931)
T KOG0476|consen 96 WFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSS-HSYL-------AYLSWVGYPVGLVLFSAGFCHYI-----A 162 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHH-------HHHHHHHHHHHHHHHHHHHHhee-----c
Confidence 5567799999999999999999877753 33322111 1111 12112233332222222 33222 2
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 005409 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (698)
Q Consensus 168 ~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~i 247 (698)
+...|+||||+|.... ++-.+.+.+.++++.|.++..+++|||.++|+|||+|||
T Consensus 163 pQAvGSGIPEmKtIlr-------------------------Gv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHi 217 (931)
T KOG0476|consen 163 PQAVGSGIPEMKTILR-------------------------GVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHI 217 (931)
T ss_pred cccccCCChhHHHHHH-------------------------hhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhH
Confidence 3456788999996421 112356677889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-------CChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHH
Q 005409 248 GKSIAKGVGNLFD-------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSA 320 (698)
Q Consensus 248 Ga~ig~~l~~~~~-------~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa 320 (698)
++.+++.++++.. -|+.+..+|+++|+|.|+|+.|.||+||++|++|++..++.+ +|++. -++|+
T Consensus 218 asivA~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAV-------rnYWR-GFFAA 289 (931)
T KOG0476|consen 218 ASIVAALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAV-------RNYWR-GFFAA 289 (931)
T ss_pred HHHHHHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeH-------HHHHH-HHHHH
Confidence 9999999988643 466677789999999999999999999999999999876543 66665 58888
Q ss_pred HHHHHHHhhhc---C-CC----Cccc--cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhh
Q 005409 321 VIASVVSEVGL---G-SE----PAFK--VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAI------VDNLQKD 384 (698)
Q Consensus 321 v~a~~v~~~~~---g-~~----~~f~--~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~------~~~~~~~ 384 (698)
..++.+.|... - .+ .+|+ ++..-.+++.|+|+|+++|++||++|++|..+.+...-+ .+++++
T Consensus 290 tcsA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~- 368 (931)
T KOG0476|consen 290 TCSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQ- 368 (931)
T ss_pred HhHHHHHHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHh-
Confidence 88888887532 1 11 2343 222112478999999999999999999998765543322 222332
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhccccC---c----HHHHHHHHccCCCCc---------------------ccc-HHH
Q 005409 385 NGIPKAVFPVMGGLAVGLIALMFPEILYW---G----FENVDILLESRPFVK---------------------GLT-ADM 435 (698)
Q Consensus 385 ~~~~~~~~~~lggllvg~i~~~~P~~~g~---G----~~~i~~ll~~~~~~~---------------------~~s-~~~ 435 (698)
..+.++|++..++++.+ .||.-+|. | .+++..+++++.|+. +.+ ...
T Consensus 369 --k~~llyp~~~a~v~ssl--tfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~t 444 (931)
T KOG0476|consen 369 --KSRLLYPAFIALVFSSL--TFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGT 444 (931)
T ss_pred --hCccHHHHHHHHHHhhe--ecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHH
Confidence 24567888888888754 56765553 2 366777887764210 112 235
Q ss_pred HHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcccc-ccccccchHHHHHHHHHHHHHHh
Q 005409 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF-SILEVASPQAYGLVGMAATLAGV 514 (698)
Q Consensus 436 l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~-~~~~~~~p~~~alvGaaA~la~v 514 (698)
|+.+.++||+++++|.....|.|+|+|.++|||++||++|+.+..++|+. ++. ++...+.||.||++|||||-++|
T Consensus 445 L~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~G---i~~~gi~~~I~PG~YAVVGAAAfsGaV 521 (931)
T KOG0476|consen 445 LVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEG---IRGGGITPPIHPGGYAVVGAAAFSGAV 521 (931)
T ss_pred HHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccc---cccCCccCccccchhhhhhhhhhccce
Confidence 77889999999999999999999999999999999999999988888873 222 12346789999999999999999
Q ss_pred hcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchhhhhHhhhhccccccccccccccccccccchhhhcc
Q 005409 515 CQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEE 594 (698)
Q Consensus 515 ~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~lL~~~ 594 (698)
||+ +|.+||+||+||+..+++|+|+|+++|+.|+..+ ..++||.....+ +
T Consensus 522 THT-vSvAVIifElTGQl~hiLPVmIAVllaNAVa~~L--QPSiYDSII~IK-----------------k---------- 571 (931)
T KOG0476|consen 522 THT-VSVAVIIFELTGQLCHILPVMIAVLLANAVAASL--QPSIYDSIIRIK-----------------K---------- 571 (931)
T ss_pred eee-eeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHh--Ccchhhheeeec-----------------c----------
Confidence 997 9999999999999999999999999999998753 567888764321 1
Q ss_pred ccccccccccccccccccchhhhhhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC--CeEEEEEe
Q 005409 595 EPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLT 672 (698)
Q Consensus 595 ~~~~~~l~~v~~~l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~--g~lvGiVt 672 (698)
...++++.. .+...+++.|+|+|.+++.++..++|.+|..+.+..+..+.+|+||+. ..|+|.|.
T Consensus 572 ---lPYLPDlpp----------s~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~ 638 (931)
T KOG0476|consen 572 ---LPYLPDLPP----------SRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVA 638 (931)
T ss_pred ---CCcCCCCCC----------cccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhH
Confidence 111222111 123356788999999999999999999999999987779999999964 36999999
Q ss_pred HHHHHHHHHH
Q 005409 673 LGDIEEFSKY 682 (698)
Q Consensus 673 ~~dl~~~l~~ 682 (698)
|+++..+++.
T Consensus 639 R~~L~~ll~~ 648 (931)
T KOG0476|consen 639 RRYLTALLQR 648 (931)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 17
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=5e-51 Score=448.22 Aligned_cols=383 Identities=15% Similarity=0.237 Sum_probs=294.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005409 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (698)
Q Consensus 89 ~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~ 168 (698)
..+++.++++|+++|+++++|+.+++++++++|+..+.. ..... ..+|+ .+++|++||++++++.++. ++.
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~----~~~~~-~~~~~-~~~~~~~gGllvgll~~~~---~~~ 80 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGT----LGIAQ-DSPLW-IIGMLTLTGIAVGLVIRFS---PGH 80 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----ccccc-ccchH-HHHHHHHHHHHHHHHHHHc---CCC
Confidence 467899999999999999999999999999999876532 11111 12343 4577999999999997542 111
Q ss_pred CCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHH
Q 005409 169 DDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIG 248 (698)
Q Consensus 169 ~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iG 248 (698)
.|+ .+++..... ++.+. .....|++++.+++++|+|+|||||++|+|
T Consensus 81 --~G~-~~~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~l~l~~G~S~GrEGP~VqiG 127 (414)
T PRK03655 81 --AGP-DPATEPLIG-----------------------------APVPP-SALPGLLLALILGLAGGVSLGPEHPIMTVN 127 (414)
T ss_pred --CCC-hHHHHHHhc-----------------------------CCCCc-cHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 122 122211100 00111 123478899999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHh
Q 005409 249 KSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSE 328 (698)
Q Consensus 249 a~ig~~l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~ 328 (698)
++++++++|+++ ++.++|+++.||+|||+||+||||++|++|++|++.+++.. .......+. +++++++..+++
T Consensus 128 a~igs~~~r~~~-~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~----~~~~~~~~~-v~aa~~a~~v~~ 201 (414)
T PRK03655 128 IALAVAIGARLL-PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV----PLWDRLFAP-LMAAAAGALTTG 201 (414)
T ss_pred HHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH----HHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999884 33566788999999999999999999999999998765431 001122332 456667777777
Q ss_pred hhcCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh-
Q 005409 329 VGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF- 407 (698)
Q Consensus 329 ~~~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~- 407 (698)
...+....|.+++++..+..++++++++|++||++|.+|++.....++.++ +.+.+ ++++.++|+++++++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~----~~~~p-~~~~~lgGl~vg~l~l~~~ 276 (414)
T PRK03655 202 LFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMH----RLKNP-VLVLGIGGFILGILGVIGG 276 (414)
T ss_pred HhCCCCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccc-hHHHHHHHHHHHHHHHHhC
Confidence 665543344555555556778899999999999999999988766544433 33334 457899999999999886
Q ss_pred hccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCC
Q 005409 408 PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNP 487 (698)
Q Consensus 408 P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~ 487 (698)
|+++|+||+.++.++++. +.+...++.+.++|+++|++|+++|+|||+|+|++++||++|..++.++ |+
T Consensus 277 ~~~~g~Gy~~i~~~~~~~----~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~----p~--- 345 (414)
T PRK03655 277 PLTLFKGLDEMQQMAANQ----AFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHV----PA--- 345 (414)
T ss_pred CccccCCHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhc----cC---
Confidence 778999999999887653 2466677778899999999999999999999999999999999988764 22
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhhc----chHHHHHHHHHHhcChhhHHHHHHHHHHHHHHh
Q 005409 488 TIHFSILEVASPQAYGLVGMAATLAGVCQ----VPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549 (698)
Q Consensus 488 ~~~~~~~~~~~p~~~alvGaaA~la~v~~----aPls~~vi~~Eltg~~~~llPlmiav~va~~v~ 549 (698)
.++...+++||+|++++++| +|+|+++++.||| ++|+|++++++.|+.
T Consensus 346 ---------~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 346 ---------VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred ---------CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 35677889999999999999 6999999999999 899999999999886
No 18
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.8e-51 Score=448.43 Aligned_cols=373 Identities=21% Similarity=0.292 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 005409 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDD 174 (698)
Q Consensus 95 a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~~g~g~~ 174 (698)
++++|+++|+++++|+.++++.++++++ .+|. .+++|.+ |++++++.+... +.. +++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~-g~~i~~l~~~~~---~~~--~~g 58 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLA-GLLIGYLYQKFG---KNS--EKG 58 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHH-HHHHHHHHHHhC---ccc--CCC
Confidence 6899999999999999999999998763 1354 3455755 555555543221 222 235
Q ss_pred hhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHH
Q 005409 175 VQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKG 254 (698)
Q Consensus 175 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~iGa~ig~~ 254 (698)
++++.+....+ .++ ..++..+.|++++.+++++|+|+|||||++|+|+++|++
T Consensus 59 ~~~v~~~~~~~--------------------------~~~-~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 59 NNLIIEEIHGP--------------------------EEG-IPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred hHHHHHHHHcc--------------------------CCC-CchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 66654321100 000 112234679999999999999999999999999999999
Q ss_pred HHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 005409 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSE 334 (698)
Q Consensus 255 l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~~~~~g~~ 334 (698)
++|+++.+++++|.+++||+|||++++||||++|++|++|++..+. ..++.+.+ .++++++++.+++.+.+.+
T Consensus 112 ~~~~~~~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~------~~~~~~~~-~~i~~~~a~~v~~~~~~~~ 184 (378)
T cd03682 112 FGRVFKLPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGR------LRYSALIP-CLVAAIVADWVSHALGLEH 184 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhh------hhHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9999999888999999999999999999999999999999985321 22344555 5789999999888654555
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh--hcccc
Q 005409 335 PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF--PEILY 412 (698)
Q Consensus 335 ~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~--P~~~g 412 (698)
+.|.+++....++.++++++++|++||++|.+|+++..++++.+++. ..+++++++++|++++++.++. |+..|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G 260 (378)
T cd03682 185 THYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLG 260 (378)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66766543334677899999999999999999999988776654432 3346788999999999998875 45789
Q ss_pred CcHHHHHH-HHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCcccc
Q 005409 413 WGFENVDI-LLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (698)
Q Consensus 413 ~G~~~i~~-ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~ 491 (698)
.|++.++. +.+++ .+ ....+.|+++|.+|+++|+|||.|+|++++||++|++++++++
T Consensus 261 ~g~~~i~~~~~~~~-----~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~------------ 319 (378)
T cd03682 261 LGTPLIEDSFFGGT-----VY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG------------ 319 (378)
T ss_pred CCHHHHHHHHhcCC-----ch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC------------
Confidence 99999887 44332 22 2346799999999999999999999999999999999998763
Q ss_pred ccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcChhhHHHHHHHHHHHHHHhhccccccchh
Q 005409 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (698)
Q Consensus 492 ~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~~~~llPlmiav~va~~v~~~~~~~~~~~ 559 (698)
.++..|+++||+|++++++|+|+|++++++|+|| ++.++|+|+++++|+.+++ ++++|
T Consensus 320 -----~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~----~~~iy 377 (378)
T cd03682 320 -----LPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG----HTGIY 377 (378)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC----CCCCC
Confidence 1367899999999999999999999999999999 5778999999999988763 44555
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.85 E-value=7e-20 Score=211.61 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhc-CCch---hHHHHHHHHHHHHHHHHh-hccc-cCcHHHHH
Q 005409 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDN----LQKDN-GIPK---AVFPVMGGLAVGLIALMF-PEIL-YWGFENVD 419 (698)
Q Consensus 350 l~~~illGil~Gl~g~lf~~~~~~~~~~~~~----~~~~~-~~~~---~~~~~lggllvg~i~~~~-P~~~-g~G~~~i~ 419 (698)
+...+++|+++|+++.+|..+.++.++.+.. ..... ..++ .+.|++||++++++.++. +... +.+.+.++
T Consensus 25 ~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 25 LIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 4567999999999999999998887766331 11111 1122 334667888888775543 3222 45666676
Q ss_pred HHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccch
Q 005409 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (698)
Q Consensus 420 ~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p 499 (698)
...++. ..++ ....+.|++.+.+|+|+|.|.|.++|++++||++|..++++++.- ..+.
T Consensus 105 ~~~~~~---~~~~----~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~--------------~~~~ 163 (574)
T PRK01862 105 AVALGD---GVVP----VRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFD--------------PPRL 163 (574)
T ss_pred HHHcCC---CCCC----hHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCC--------------HHHH
Confidence 665443 1233 234567999999999999999999999999999999999987531 1235
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHh-cC--hhhHHHHHHHHHHHHHHhhccccccchh
Q 005409 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELT-QD--YRIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (698)
Q Consensus 500 ~~~alvGaaA~la~v~~aPls~~vi~~Elt-g~--~~~llPlmiav~va~~v~~~~~~~~~~~ 559 (698)
..+..+|+||.+++++++|++++++.+|.+ ++ .+.+.|.++++++++++++...++++.|
T Consensus 164 r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~~ 226 (574)
T PRK01862 164 RLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFAGYQPPY 226 (574)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 678899999999999999999999999986 54 4788999999999988887655555443
No 20
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.72 E-value=6.5e-17 Score=178.10 Aligned_cols=184 Identities=22% Similarity=0.234 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCc
Q 005409 357 GVLCGLISLTLSRCTTYMLAIVDNLQK-------DNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVK 429 (698)
Q Consensus 357 Gil~Gl~g~lf~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~ 429 (698)
|+++|+++.+|.++.++.++.+.+... ..++.+.+.+++++++++++..+.|...|.|++.+...++++. .
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~--~ 78 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGG--G 78 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCC--C
Confidence 688999999999999988776554321 1111233567888999998887777688899998877776531 1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHH
Q 005409 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509 (698)
Q Consensus 430 ~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA 509 (698)
. ......+.|++++.+++++|.|+|.+.|++++|+++|..+++.++. +..+...++++||+|
T Consensus 79 ~----~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--------------~~~~~~~l~~~G~aa 140 (383)
T cd00400 79 R----LPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--------------SRNDRRILVACGAAA 140 (383)
T ss_pred C----CCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHH
Confidence 1 2244678899999999999999999999999999999999987753 123567899999999
Q ss_pred HHHHhhcchHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHhhccccccchhh
Q 005409 510 TLAGVCQVPLTSVLLLFELTQDYR---IVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (698)
Q Consensus 510 ~la~v~~aPls~~vi~~Eltg~~~---~llPlmiav~va~~v~~~~~~~~~~~~ 560 (698)
.+++++|+|++++++++|++++.. .+.|.++++.+++.+++.+..++..|+
T Consensus 141 glaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 141 GIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred HHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCeee
Confidence 999999999999999999997554 789999999999988876555544443
No 21
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.70 E-value=1.7e-16 Score=175.78 Aligned_cols=184 Identities=24% Similarity=0.253 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCchhHH----HHHHHHHHHHHHH-HhhccccCcHHHHHHHHccCCCC
Q 005409 356 LGVLCGLISLTLSRCTTYMLAIVDNLQKDN--GIPKAVF----PVMGGLAVGLIAL-MFPEILYWGFENVDILLESRPFV 428 (698)
Q Consensus 356 lGil~Gl~g~lf~~~~~~~~~~~~~~~~~~--~~~~~~~----~~lggllvg~i~~-~~P~~~g~G~~~i~~ll~~~~~~ 428 (698)
+|+++|+++.+|.+.++++++.+.+..... ..+++++ +.++|++++.+.. +.|+..|+|++.++..++++.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~-- 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL-- 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--
Confidence 488999999999999999888765543211 1112222 2445566665554 479999999999999888752
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 005409 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (698)
Q Consensus 429 ~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaa 508 (698)
+. ......+.|++++.+|+++|.|+|.+.|++++||++|..+++.++. ...+...+..+||+
T Consensus 79 -~~---~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~--------------~~~~~~~l~~~g~a 140 (402)
T cd01031 79 -PP---NWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT--------------SPEERRQLIAAGAA 140 (402)
T ss_pred -Cc---ccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHH
Confidence 11 2244678999999999999999999999999999999999987653 12357889999999
Q ss_pred HHHHHhhcchHHHHHHHHH-HhcC--hhhHHHHHHHHHHHHHHhhccccccchh
Q 005409 509 ATLAGVCQVPLTSVLLLFE-LTQD--YRIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (698)
Q Consensus 509 A~la~v~~aPls~~vi~~E-ltg~--~~~llPlmiav~va~~v~~~~~~~~~~~ 559 (698)
|.+++++|+|++++++.+| ++++ .+.+.|+++++++++.+++...++++.|
T Consensus 141 ag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 141 AGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 9999999999999999999 6665 4589999999999988877655555444
No 22
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=1.7e-15 Score=167.05 Aligned_cols=192 Identities=18% Similarity=0.136 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 005409 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (698)
Q Consensus 88 ~~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~ 167 (698)
.+..++..+++|+++|+++.+|+..+++.++.+.+... .. .+.+.++.+.++|++++.+..+.+ ++
T Consensus 198 ~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~gl~~~~~~~~~~--~~ 263 (390)
T cd01034 198 LGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVR--------RF----RRRRPVLFAALCGLALALIGLVSG--GL 263 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cc----cchhhHHHHHHHHHHHHHHHHhCC--Cc
Confidence 34557789999999999999999999988876543210 00 011123445677777776654321 12
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 005409 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (698)
Q Consensus 168 ~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~i 247 (698)
..|. |.+++++... .+....+...+.|++++++|+++|.++|+|+|++++
T Consensus 264 ~~G~--G~~~i~~~~~----------------------------~~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~i 313 (390)
T cd01034 264 TFGT--GYLQARAALE----------------------------GGGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAV 313 (390)
T ss_pred cccC--cHHHHHHHHh----------------------------CCCcccHHHHHHHHHHHHHHHHcCCCcceechHHHH
Confidence 2333 3444432100 000011234578999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHHHH
Q 005409 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (698)
Q Consensus 248 Ga~ig~~l~~~~~~~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~v~ 327 (698)
|+++|+.++++++. .+.+.++.+||||++++++|+|+++++|++|++... ..+.| +++++++|+.++
T Consensus 314 Ga~~G~~~~~~~~~--~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~----------~~l~p-~lia~~~A~~v~ 380 (390)
T cd01034 314 GAGLGSLLAALLGS--VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQ----------QMLLP-LLAAALLASGVS 380 (390)
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCh----------hhHHH-HHHHHHHHHHHH
Confidence 99999999999864 356789999999999999999999999999998421 23344 688999999999
Q ss_pred hhhcCCCCcc
Q 005409 328 EVGLGSEPAF 337 (698)
Q Consensus 328 ~~~~g~~~~f 337 (698)
+.+ +.++.|
T Consensus 381 ~~~-~~~~iY 389 (390)
T cd01034 381 RLV-CPEPLY 389 (390)
T ss_pred HHh-CCCCCC
Confidence 875 555655
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.68 E-value=1.1e-15 Score=171.14 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CchhHHHHHHHHHHHHHH-----HHhhccccCcHHHHHHHH
Q 005409 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNG---IPKAVFPVMGGLAVGLIA-----LMFPEILYWGFENVDILL 422 (698)
Q Consensus 351 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~---~~~~~~~~lggllvg~i~-----~~~P~~~g~G~~~i~~ll 422 (698)
.+.+++|+++|+++.+|.++++++++.+........ .+.+..+++.+.+.+.+. .+.|+..|+|++.++..+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 467899999999999999999998887655432211 222333444333333333 245999999999999888
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHH
Q 005409 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (698)
Q Consensus 423 ~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~ 502 (698)
+++. ..+ .......|++.+.+++++|.|+|.++|++++|+++|..+++.++.. ...+...+
T Consensus 82 ~~~~---~~~---~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~-------------~~~~~~~l 142 (438)
T PRK05277 82 EGLR---PVR---WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR-------------SDEARHTL 142 (438)
T ss_pred cCCC---ccc---hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC-------------CHHHHHHH
Confidence 7642 122 1234578999999999999999999999999999999999877531 11246789
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHH-HhcC--hh--hHHHHHHHHHHHHHHhhccccccchh
Q 005409 503 GLVGMAATLAGVCQVPLTSVLLLFE-LTQD--YR--IVLPLLGAVGLSSWFTSGQMRRRDVK 559 (698)
Q Consensus 503 alvGaaA~la~v~~aPls~~vi~~E-ltg~--~~--~llPlmiav~va~~v~~~~~~~~~~~ 559 (698)
..+||||.+++++|+|++++++++| ++++ ++ .+.|+++++++++.+.+.+.++.+.|
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~ 204 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFNGEQAVI 204 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999 5552 23 47999999998888876554444443
No 24
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=2e-15 Score=166.12 Aligned_cols=182 Identities=17% Similarity=0.153 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005409 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (698)
Q Consensus 89 ~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~~ 168 (698)
+..+...+++|+++|+++.+|+.++.+.++++... . .+| +.+.+||++++++..+.+ +.
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~------~--------~~~----~~~~l~gl~~g~~~~~~p---~~ 260 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG------K--------RIL----WQMPLAFLVIGLLSIFFP---QI 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c--------chH----HHHHHHHHHHHHHHHHHH---HH
Confidence 55677899999999999999999999988764210 0 112 235688888888755433 33
Q ss_pred CCCCc-chhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 005409 169 DDDDD-DVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (698)
Q Consensus 169 ~g~g~-~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~i 247 (698)
.|.|. .++.+.+..+ .........+.|++++.+|+++|+++|.|+|++.+
T Consensus 261 ~G~G~~~i~~~~~~~~-----------------------------~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~i 311 (388)
T cd01033 261 LGNGRALAQLAFSTTL-----------------------------TLSLLLILLVLKIVATLLALRAGAYGGLLTPSLAL 311 (388)
T ss_pred hCCcHHHHHHHHcCCc-----------------------------hHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 45452 2222211100 00111335678999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC--ChhhHHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHHHH
Q 005409 248 GKSIAKGVGNLFDR--RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (698)
Q Consensus 248 Ga~ig~~l~~~~~~--~~~~~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a~~ 325 (698)
|+.+|+.+++.++. ++.+.+.++.+||||.+++++|||+++++|++|++-.+ +..+.| +++++++|+.
T Consensus 312 Ga~~G~~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~---------~~~l~P-l~ia~~~a~~ 381 (388)
T cd01033 312 GALLGALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQN---------PLFLIP-LMLAVAGAVA 381 (388)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---------HHHHHH-HHHHHHHHHH
Confidence 99999999998652 34456789999999999999999999999999986311 234555 6899999999
Q ss_pred HHhhh
Q 005409 326 VSEVG 330 (698)
Q Consensus 326 v~~~~ 330 (698)
+++.+
T Consensus 382 vs~~~ 386 (388)
T cd01033 382 VSRFI 386 (388)
T ss_pred HHHHh
Confidence 98764
No 25
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.58 E-value=8.7e-14 Score=154.38 Aligned_cols=191 Identities=20% Similarity=0.119 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 005409 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (698)
Q Consensus 88 ~~~~~~~a~lvGvl~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~vgll~~~~~~~~~ 167 (698)
++..+...+++|+++|+++.+|..++++.++++... + . .+| +.|.+||++++.+..+.+ +
T Consensus 217 ~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~-~--------~----~~~----~~~~lggli~g~l~~~~p---~ 276 (418)
T PRK01610 217 QARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL-K--------L----APP----WQLALGGLIVGLLSLFTP---A 276 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c--------c----chh----HHHHHHHHHHHHHHHHhh---H
Confidence 345567789999999999999999999888765321 0 0 122 236899999998865433 3
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhcccCCCCCcccccchhhhhHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 005409 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (698)
Q Consensus 168 ~~g~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ltl~sG~s~G~EgP~v~i 247 (698)
..|+| .+.++..... +..........+.|++.+.+|+++|.+.|.++|++.+
T Consensus 277 ~~G~G--~~~i~~~~~~--------------------------~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~i 328 (418)
T PRK01610 277 VWGNG--YSVVQSFLTA--------------------------PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFV 328 (418)
T ss_pred HhCCc--HHHHHHHHcC--------------------------ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Confidence 34555 2222211000 0000111123478999999999999999999999999
Q ss_pred HHHHHHHHHhhcC---CChhh-HHHHHHhhhhHhHHHHhhhhHHHHHHHHHHhcccCcccchhhhhhhHHHHHHHHHHHH
Q 005409 248 GKSIAKGVGNLFD---RRPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIA 323 (698)
Q Consensus 248 Ga~ig~~l~~~~~---~~~~~-~r~l~~~G~aAgiaa~F~APl~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aav~a 323 (698)
|+++|+.+++.++ .+..+ .-.+..+||+|.+++++|||++++++++|++. ++ . ..+++++++++|
T Consensus 329 Ga~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg-~~---------~-~~~p~~ia~~ia 397 (418)
T PRK01610 329 GLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTG-EY---------Q-LLPGLLIACVIA 397 (418)
T ss_pred HHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhC-CH---------h-HHHHHHHHHHHH
Confidence 9999999999765 22222 33466799999999999999999999999863 21 1 244568899999
Q ss_pred HHHHhhhcCCCCccc
Q 005409 324 SVVSEVGLGSEPAFK 338 (698)
Q Consensus 324 ~~v~~~~~g~~~~f~ 338 (698)
+++++.+ ++++.|+
T Consensus 398 ~~vs~~~-~~~siy~ 411 (418)
T PRK01610 398 SVISRTL-RRDSIYR 411 (418)
T ss_pred HHHHHHh-CCCCchH
Confidence 9999865 4446664
No 26
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.57 E-value=4.7e-14 Score=154.91 Aligned_cols=174 Identities=19% Similarity=0.297 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCcccc
Q 005409 353 YLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT 432 (698)
Q Consensus 353 ~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~s 432 (698)
.+++|+++|+++.+|.++..++.+.+.+ .++. .....++|++++.+...+|+..+.|.+.+.+.++++. ...+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~--~~~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPE--EGIP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccC--CCCc
Confidence 5789999999999999999887665321 1111 1222345667766666777777788888777776541 1123
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHH
Q 005409 433 ADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLA 512 (698)
Q Consensus 433 ~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la 512 (698)
. .....|++.+.+++++|.|+|.+.|++++|+++|..+++.++. +..+...+..+||+|.++
T Consensus 75 ~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~--------------~~~~~r~l~~~g~aAgla 136 (378)
T cd03682 75 L----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL--------------PEEDRRILLIAGIAAGFA 136 (378)
T ss_pred h----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 2 3455799999999999999999999999999999999987643 112456789999999999
Q ss_pred HhhcchHHHHHHHHHHh--c--ChhhHHHHHHHHHHHHHHhhc
Q 005409 513 GVCQVPLTSVLLLFELT--Q--DYRIVLPLLGAVGLSSWFTSG 551 (698)
Q Consensus 513 ~v~~aPls~~vi~~Elt--g--~~~~llPlmiav~va~~v~~~ 551 (698)
+++|+|++++++.+|++ + +++.++|.++++++++.+++.
T Consensus 137 a~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~ 179 (378)
T cd03682 137 AVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHA 179 (378)
T ss_pred HHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 3 467789999999998887754
No 27
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.52 E-value=1e-13 Score=155.94 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---hcCC-c----hhHHHHHHHHHHHHHHH-HhhccccCcHHHH
Q 005409 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNL-QK---DNGI-P----KAVFPVMGGLAVGLIAL-MFPEILYWGFENV 418 (698)
Q Consensus 349 ~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~-~~---~~~~-~----~~~~~~lggllvg~i~~-~~P~~~g~G~~~i 418 (698)
.+...+++|+++|+++.+|..+++++++.+... .+ .... . ....+++++++++++.. +.|+..|+|.+.+
T Consensus 32 ~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v 111 (466)
T cd03685 32 KWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEV 111 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHH
Confidence 345679999999999999999999887763322 11 1111 1 11345666777777655 4599999999999
Q ss_pred HHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005409 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (698)
Q Consensus 419 ~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~ 498 (698)
+..+++... +...-...++.|++.+.+++++|.|.|.++|++.+||++|..+++.....+......++. ..+..+
T Consensus 112 ~~~l~g~~~----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~ 186 (466)
T cd03685 112 KGYLNGVKI----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FRNDRD 186 (466)
T ss_pred HHHHcCcCc----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-ccCHHH
Confidence 998886421 111224567799999999999999999999999999999999997421000000000000 001235
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHh
Q 005409 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFT 549 (698)
Q Consensus 499 p~~~alvGaaA~la~v~~aPls~~vi~~Eltg---~~~~llPlmiav~va~~v~ 549 (698)
...+..+||||.+++++++|++++++.+|.++ +.+...+.+++++++..++
T Consensus 187 ~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 187 KRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999875 3334445554444444443
No 28
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.2e-12 Score=146.33 Aligned_cols=144 Identities=29% Similarity=0.378 Sum_probs=119.5
Q ss_pred HHHHHHHHHHH--HHHHHhhccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhh
Q 005409 391 VFPVMGGLAVG--LIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGA 468 (698)
Q Consensus 391 ~~~~lggllvg--~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA 468 (698)
+.+.++|++++ ++..+.|+.-|+|.+++.+.+++.. .. .......+|++++.+++++|.+.|.+.|++++|+
T Consensus 68 l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~--~~----~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga 141 (443)
T COG0038 68 LVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK--GR----ISPRVLPVKLVATLLTIGSGASLGREGPSVQIGA 141 (443)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC--Cc----ccHHHHHHHHHHHHHHHhcCcccccccHHHHHHH
Confidence 34567888888 4445679999999999998888741 11 2334566699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc----ChhhHHHHHHHHHH
Q 005409 469 ATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ----DYRIVLPLLGAVGL 544 (698)
Q Consensus 469 ~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg----~~~~llPlmiav~v 544 (698)
++|+.+++.++. ...+...+.++|+||.+++++++|++++++++|+.. ++..+.|+++++++
T Consensus 142 ~~g~~~~~~l~~--------------~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~v 207 (443)
T COG0038 142 AIGSLLGRLLKL--------------SREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVV 207 (443)
T ss_pred HHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999999998863 234678899999999999999999999999999863 46789999999999
Q ss_pred HHHHhhcccc
Q 005409 545 SSWFTSGQMR 554 (698)
Q Consensus 545 a~~v~~~~~~ 554 (698)
+..+...+..
T Consensus 208 a~~v~~~~~~ 217 (443)
T COG0038 208 ALLVAGLFGG 217 (443)
T ss_pred HHHHHHHcCC
Confidence 9888776544
No 29
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.46 E-value=3.6e-13 Score=149.67 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------chhHHHHHHHHHHHHHH-HHhhccccCcHHHHHHHHccCCCC
Q 005409 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFV 428 (698)
Q Consensus 357 Gil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lggllvg~i~-~~~P~~~g~G~~~i~~ll~~~~~~ 428 (698)
|++.|+++..|..+.++..+.++.+...... .+.+.+++.+++.+.+. ++.|+..|+|.++++..+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~- 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL- 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc-
Confidence 5677888888888888877766655432111 12334556666655554 47899999999999988876421
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 005409 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (698)
Q Consensus 429 ~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaa 508 (698)
+..+.....+.|++.+.+++++|.|.|.++|++++||++|..+++..+....-....+.. ..+..+...+..+|+|
T Consensus 80 ---~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~ll~aGaa 155 (416)
T cd01036 80 ---PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL-FRNPRDRRDFLVAGAA 155 (416)
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh-ccCHHHHHHHHHHHhh
Confidence 122334567799999999999999999999999999999999998765321000000000 0012456789999999
Q ss_pred HHHHHhhcchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHhhcc
Q 005409 509 ATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTSGQ 552 (698)
Q Consensus 509 A~la~v~~aPls~~vi~~Eltg---~~~~llPlmiav~va~~v~~~~ 552 (698)
|.+++++++|++++++.+|.+. +.+.+.|.+++++++..+.+..
T Consensus 156 AGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 156 AGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875 3457899999988888776543
No 30
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.46 E-value=4.9e-13 Score=148.93 Aligned_cols=188 Identities=19% Similarity=0.165 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------chhHHHHHHHHHHHHHHH-HhhccccCcHHHHHHHH
Q 005409 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIAL-MFPEILYWGFENVDILL 422 (698)
Q Consensus 351 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lggllvg~i~~-~~P~~~g~G~~~i~~ll 422 (698)
.+.+++|++.|+++..|..+.+++.+.++.+...... .+.+.+++++++++.+.. +.|+.-|+|-++++..+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 4578999999999999999998887766655432111 123445667777777664 68999999999998888
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHH
Q 005409 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (698)
Q Consensus 423 ~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~ 502 (698)
++... +..+-....+.|++.+.+++++|.|.|.++|++++||++|..+++..+..... ..+..+...+
T Consensus 83 ~g~~~----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~--------~~~~~~rr~L 150 (426)
T cd03683 83 RGVVL----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGI--------YENESRRMEM 150 (426)
T ss_pred cCCCc----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccccccc--------ccCHHHHHHH
Confidence 76421 22233556788999999999999999999999999999999999876531000 0012234568
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHhh
Q 005409 503 GLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTS 550 (698)
Q Consensus 503 alvGaaA~la~v~~aPls~~vi~~Eltg---~~~~llPlmiav~va~~v~~ 550 (698)
..+|+||.+++++++|++++++.+|... +.+.+.|.+++++++..+++
T Consensus 151 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~ 201 (426)
T cd03683 151 LAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFR 201 (426)
T ss_pred HHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764 34577899888888877554
No 31
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.41 E-value=2.4e-12 Score=144.15 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH-HHhhccccCcHHHHHHHHccCCCCccccHHH
Q 005409 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFVKGLTADM 435 (698)
Q Consensus 357 Gil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~-~~~P~~~g~G~~~i~~ll~~~~~~~~~s~~~ 435 (698)
|++.|+++..+..+.+++...+....+. ..+.+.+++++++++.+. .+.|+.-|+|-++++..+++... +..+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~----~~~~ 74 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII----RGFL 74 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc----cccc
Confidence 6788999999988888776554432210 112333446666666664 66799999999999888876421 1123
Q ss_pred HHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhh
Q 005409 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (698)
Q Consensus 436 l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~alvGaaA~la~v~ 515 (698)
-....+.|++.+.+++++|.|.|.++|++++||++|..++++++.... +..+...+..+|+||.+++++
T Consensus 75 ~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~-----------~~~~~r~li~~GaaAGlaAaF 143 (445)
T cd03684 75 GKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRR-----------NEAKRREILSAAAAAGVAVAF 143 (445)
T ss_pred cHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHhhhhHHhc
Confidence 345677899999999999999999999999999999999998753211 224567889999999999999
Q ss_pred cchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHhhc
Q 005409 516 QVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTSG 551 (698)
Q Consensus 516 ~aPls~~vi~~Eltg---~~~~llPlmiav~va~~v~~~ 551 (698)
++|++++++.+|... +.+.+.|.+++++++..+++.
T Consensus 144 ~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~ 182 (445)
T cd03684 144 GAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKS 182 (445)
T ss_pred CCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999653 456789999999998877753
No 32
>PRK03655 putative ion channel protein; Provisional
Probab=99.37 E-value=2.1e-11 Score=134.85 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCC-ch--hHHHHHHHHHHHHHHHHhhccccCcHHHHHHHH
Q 005409 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQK----DNGI-PK--AVFPVMGGLAVGLIALMFPEILYWGFENVDILL 422 (698)
Q Consensus 350 l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~----~~~~-~~--~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll 422 (698)
+...+++|+++|+++.+|.+++++.++.+-.... .... ++ ...+.++|+++|++..+.|..-|. ...++..
T Consensus 13 ~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~~~- 90 (414)
T PRK03655 13 SLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATEPL- 90 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHHHH-
Confidence 4567999999999999999999888765432111 0011 11 223668899999987777755444 2333333
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccchHHH
Q 005409 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (698)
Q Consensus 423 ~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~p~~~ 502 (698)
++.+ +.. .....|++++.+++++|.|.|++.|++++||++|..+++.+. +. .+....
T Consensus 91 ~~~~----~~~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~---~~------------~~~~~l 147 (414)
T PRK03655 91 IGAP----VPP----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL---PR------------VNRMDW 147 (414)
T ss_pred hcCC----CCc----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc---cC------------CChhHH
Confidence 3322 121 345678999999999999999999999999999999998762 11 123456
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHH-hcChh------hHHHHHHHHHHHHHHhhc
Q 005409 503 GLVGMAATLAGVCQVPLTSVLLLFEL-TQDYR------IVLPLLGAVGLSSWFTSG 551 (698)
Q Consensus 503 alvGaaA~la~v~~aPls~~vi~~El-tg~~~------~llPlmiav~va~~v~~~ 551 (698)
.++|+||.+++++|+|++++++.+|. .+++. .+.|+ ++++++..++..
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~ 202 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGL 202 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 78999999999999999999999996 45443 34454 455556665543
No 33
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.27 E-value=2.8e-11 Score=132.00 Aligned_cols=146 Identities=28% Similarity=0.365 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHh-hccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHH
Q 005409 395 MGGLAVGLIALMF-PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (698)
Q Consensus 395 lggllvg~i~~~~-P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~ 473 (698)
+++++++++...+ |+.-|+|.+++...+++.. ...-....+.|++.+.+++++|.|.|.++|+..+|+++|..
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~------~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS------GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS---------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC------CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4678888887776 9999999999998887752 12445677899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccc-hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHh
Q 005409 474 YGKFINFAIAQSNPTIHFSILEVAS-PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFT 549 (698)
Q Consensus 474 ~g~~~~~~~p~~~~~~~~~~~~~~~-p~~~alvGaaA~la~v~~aPls~~vi~~Eltg---~~~~llPlmiav~va~~v~ 549 (698)
+++.++.. ..+ ...+..+|++|.+++++++|++++++.+|... +++.+.|.++++++++.+.
T Consensus 75 ~~~~~~~~--------------~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~ 140 (355)
T PF00654_consen 75 LGRRFRLS--------------RNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVS 140 (355)
T ss_dssp HHHHTT----------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHH
T ss_pred HHHhhccc--------------chHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHH
Confidence 99886531 122 45699999999999999999999999999864 5789999999999999888
Q ss_pred hccccccchhh
Q 005409 550 SGQMRRRDVKE 560 (698)
Q Consensus 550 ~~~~~~~~~~~ 560 (698)
+....+++.|+
T Consensus 141 ~~~~~~~~~f~ 151 (355)
T PF00654_consen 141 RLLFGNHPIFG 151 (355)
T ss_dssp HHHHTSS-SS-
T ss_pred HHHcCcCcccc
Confidence 77666665554
No 34
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.8e-09 Score=119.11 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-Hhhh--cCCchhHHHHH---H-----HHHHHH-HHHHhhcccc
Q 005409 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAI----VDN-LQKD--NGIPKAVFPVM---G-----GLAVGL-IALMFPEILY 412 (698)
Q Consensus 349 ~l~~~illGil~Gl~g~lf~~~~~~~~~~----~~~-~~~~--~~~~~~~~~~l---g-----gllvg~-i~~~~P~~~g 412 (698)
-+..+.++|++.|++|.+-.-.++.+..+ ... +.+. .+-. .+...+ | .++.++ ++++-|-..|
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~-~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAG 165 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGC-LALSLLVLLGFNLVLVFLASVLVAYIAPVAAG 165 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhcccc-HHHHHHHHHHHhHHHHHHHHHHHHeechhccC
Confidence 35578899999999998766655543321 100 1011 0000 111111 1 111122 2356699999
Q ss_pred CcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHH-------HhhhcC
Q 005409 413 WGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIN-------FAIAQS 485 (698)
Q Consensus 413 ~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~-------~~~p~~ 485 (698)
+|.++++.-+++-. .+..+.+..++.|++-.+.+++.|.-.|-++|++..||++|+.+|+--. .+++.
T Consensus 166 SGIPevK~YLNGV~----iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~- 240 (762)
T KOG0474|consen 166 SGIPEVKCYLNGVK----IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRY- 240 (762)
T ss_pred CCCchhhhhhcCcc----CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhh-
Confidence 99999998888742 2344556778899999999999999999999999999999999886311 01111
Q ss_pred CCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---hhhHHHHHHHHHHHHHHhh
Q 005409 486 NPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQD---YRIVLPLLGAVGLSSWFTS 550 (698)
Q Consensus 486 ~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~---~~~llPlmiav~va~~v~~ 550 (698)
+-.+-+.+-+..||+||..+|++|||+.++++.+|-..+ ..++.=..++++++.++.+
T Consensus 241 -------FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 241 -------FRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred -------hcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 113456788999999999999999999999999996542 3455555555555554443
No 35
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.83 E-value=1.2e-08 Score=80.50 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=53.2
Q ss_pred chhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 626 v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
|+|+|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||++|+.+++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999998764
No 36
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.75 E-value=4e-08 Score=99.93 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=56.1
Q ss_pred hhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 620 ~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
....++..|+|++++++++.++++.++.+.|.+++.+.+||+|++.+++|+||.+|+.+
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~ 299 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK 299 (382)
T ss_pred HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhh
Confidence 34678999999999999999999999999999999999999999999999999999987
No 37
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.31 E-value=1e-06 Score=79.00 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=52.2
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 55 ~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 35699999999999999999999999999999999999998899999999999975
No 38
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.29 E-value=1.2e-06 Score=87.90 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=64.7
Q ss_pred cccccchhhhhhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 608 LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 608 l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.|+...-.+-..+.+|+|+|.++++++++|+.+.||+++|.+++.+++.|+|++|+.+|+|||.|+++.+.
T Consensus 218 it~~dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 218 ITLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred EEHHHHHHHHHcCCccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 45666654444445678999999999999999999999999999999999999999999999999999998664
No 39
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.20 E-value=2.8e-06 Score=76.46 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=53.4
Q ss_pred hccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 621 ~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
....+++++|.++++++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 3456799999999999999999999999999999999999998899999999999864
No 40
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.06 E-value=7.7e-06 Score=74.05 Aligned_cols=55 Identities=33% Similarity=0.364 Sum_probs=51.6
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+++|+|.+++.++++++++.++++.|.+.+...+||+|++++++|+|+.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5699999999999999999999999999999999999998899999999999864
No 41
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.02 E-value=1.5e-05 Score=81.57 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=57.4
Q ss_pred hccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 621 ~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
...-+++++|++++.++.+|++..|.+-.+.+.+.+++||+|++|+++||||.+|++..+-.
T Consensus 312 ~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 312 LRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred cCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999999987653
No 42
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.91 E-value=2.2e-05 Score=70.43 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=51.1
Q ss_pred cccchhccccCceEEcCC--CCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMT--TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~--~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++++++++ +++.++++.|.+++.+.+||+|++|+++|+||++|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 457899999999999887 78999999999999999999998899999999999975
No 43
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.90 E-value=3e-05 Score=81.25 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=69.9
Q ss_pred ccccccccccc------cccccchhhhhhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEE
Q 005409 597 YAINLCEVESS------LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGL 670 (698)
Q Consensus 597 ~~~~l~~v~~~------l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGi 670 (698)
.++.+|.+... ++.+|.. +..++.++..+|++++.++.+.+++..+.+.|.-++.+.+||+|++.+++|+
T Consensus 220 ~~sRfPVvn~~~kvvGvVt~rDv~----~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGi 295 (432)
T COG4109 220 GHSRFPVVNRSMKVVGVVTMRDVL----DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGI 295 (432)
T ss_pred CCCccceecccceEEEEEEehhhh----cCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEE
Confidence 35566666543 4455552 3456778999999999999999999999999999999999999999999999
Q ss_pred EeHHHHHHHHHHhh
Q 005409 671 LTLGDIEEFSKYAQ 684 (698)
Q Consensus 671 Vt~~dl~~~l~~~~ 684 (698)
|||+|+++.++..+
T Consensus 296 itR~dvlk~lq~~q 309 (432)
T COG4109 296 ITRQDVLKSLQMIQ 309 (432)
T ss_pred EEHHHHHHHHHHhc
Confidence 99999999987554
No 44
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.90 E-value=2.2e-05 Score=69.81 Aligned_cols=56 Identities=32% Similarity=0.396 Sum_probs=51.6
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|++|++|+.+
T Consensus 55 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 34789999999999999999999999999999999999998799999999999865
No 45
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.89 E-value=2.6e-05 Score=69.55 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=52.7
Q ss_pred hccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 621 ~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
....++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 3456799999999999999999999999999999999999998899999999999863
No 46
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.89 E-value=2.8e-05 Score=69.57 Aligned_cols=55 Identities=31% Similarity=0.308 Sum_probs=51.3
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~ 677 (698)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 4578999999999999999999999999999999999999889999999999985
No 47
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=1.9e-05 Score=70.73 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=50.0
Q ss_pred cccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+ +++++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4678899975 3678999999999999999999999999998889999999999864
No 48
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.87 E-value=4.4e-05 Score=86.71 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=116.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ch-hHHHHHHHHHHHHH-------HHHhhccccCcHHHH
Q 005409 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-PK-AVFPVMGGLAVGLI-------ALMFPEILYWGFENV 418 (698)
Q Consensus 348 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~-~~-~~~~~lggllvg~i-------~~~~P~~~g~G~~~i 418 (698)
.++.+.++||++.+++++..-..+...++....+++...- +. ..+..-.+..++++ -+..|+..|+|...+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 4567889999999999998877776666654444432211 11 11112233333333 234599999999999
Q ss_pred HHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhcCCCccccccccccc
Q 005409 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (698)
Q Consensus 419 ~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~ 498 (698)
+-++.+-.+ .-.+-+-.++.|++...+++|+|.|-|-.+|-+.|++.+...++++..--+.+. ....+
T Consensus 174 KtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~--------~enes 241 (931)
T KOG0476|consen 174 KTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF--------FENES 241 (931)
T ss_pred HHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc--------ccCcc
Confidence 988877422 122334567899999999999999999999999999999999998864222220 01111
Q ss_pred -hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Q 005409 499 -PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQD 531 (698)
Q Consensus 499 -p~~~alvGaaA~la~v~~aPls~~vi~~Eltg~ 531 (698)
..-.-.+|.|-..|.++.||+.++++-+|.|-.
T Consensus 242 R~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~ 275 (931)
T KOG0476|consen 242 RNMEMLAAACAVGVACTFSAPIGGVLFSIEVTST 275 (931)
T ss_pred hHHHHHHHHhhhhheeeecCccceeEEEEEEeee
Confidence 122333455556677888999999999999863
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=3.3e-05 Score=68.63 Aligned_cols=56 Identities=30% Similarity=0.327 Sum_probs=51.7
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45679999999999999999999999999999999999998 789999999999864
No 50
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=2.8e-05 Score=70.56 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=52.7
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 355789999999999999999999999999999999999998899999999999864
No 51
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.86 E-value=3e-05 Score=70.61 Aligned_cols=53 Identities=28% Similarity=0.341 Sum_probs=48.6
Q ss_pred chhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 626 v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|++.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 34578889999999999999999999999999999998899999999999863
No 52
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.86 E-value=3.6e-05 Score=68.30 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=51.1
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5788999999999999999999999999999999999998899999999999864
No 53
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.86 E-value=3.3e-05 Score=68.46 Aligned_cols=57 Identities=33% Similarity=0.394 Sum_probs=52.2
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+|+++|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 456799999999999999999999999999888899999998899999999999864
No 54
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.85 E-value=2.5e-05 Score=70.64 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred ccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC---CeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dl~~ 678 (698)
...++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 35678899985 78899999999999999999999999999976 69999999999864
No 55
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.84 E-value=2.2e-05 Score=79.04 Aligned_cols=62 Identities=27% Similarity=0.347 Sum_probs=57.5
Q ss_pred hccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHh
Q 005409 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 621 ~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~ 683 (698)
....+|.++|+++++++.+++|++|+...|.+++.+..||+|++ +++|++|.+|+.+.+.+.
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g 230 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG 230 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC
Confidence 45678999999999999999999999999999999999999975 999999999999998754
No 56
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.81 E-value=4.3e-05 Score=68.50 Aligned_cols=56 Identities=32% Similarity=0.324 Sum_probs=51.5
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...+++++|.++++++++++++.++++.|.+.+...+||+|+ ++++|+|+++|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 346799999999999999999999999999999999999987 99999999999864
No 57
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=4.5e-05 Score=67.69 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=52.0
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|++|++|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45799999999999999999999999999999999999998899999999999864
No 58
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.80 E-value=4.2e-05 Score=68.07 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=50.7
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.+++++++++++++.|.+++...+||+| +++++|+||++|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4579999999999999999999999999999999999998 589999999999975
No 59
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.80 E-value=3.1e-05 Score=87.83 Aligned_cols=61 Identities=25% Similarity=0.225 Sum_probs=55.5
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
..+.+++|+|++ +++++++++++.|+++.|.+++.+.+||+|++++++|+||++|+.+...
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKE 220 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhccc
Confidence 345689999996 7889999999999999999999999999998899999999999998654
No 60
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.79 E-value=3.9e-05 Score=87.21 Aligned_cols=64 Identities=28% Similarity=0.326 Sum_probs=58.2
Q ss_pred ccccchhccccC--ceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhhh
Q 005409 622 RRVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685 (698)
Q Consensus 622 ~~i~v~dvM~~~--~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~~ 685 (698)
.+.+++++|+++ ++++++++++.|+++.|.+++.+.+||||++++++|+||++|+.+...+...
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~ 226 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKL 226 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCc
Confidence 467899999977 7899999999999999999999999999988999999999999999876443
No 61
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.79 E-value=2.7e-05 Score=83.86 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred cccchhccccC--ceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 623 RVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 623 ~i~v~dvM~~~--~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
..+|+|+|+++ ++++++++++.|+.+.|.+.+...+||+|++|+++|+|+.+|+.+.+..
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~ 257 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG 257 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC
Confidence 67899999998 9999999999999999988888999999999999999999999886643
No 62
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.78 E-value=5.1e-05 Score=68.30 Aligned_cols=56 Identities=32% Similarity=0.403 Sum_probs=52.1
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+.+
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 46788999999999999999999999999999999999998899999999999975
No 63
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.78 E-value=4.1e-05 Score=69.42 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=47.0
Q ss_pred hhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 627 ~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+.|..++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 68 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 3456667889999999999999999999999999998899999999999875
No 64
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.78 E-value=4.8e-05 Score=67.59 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=52.5
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
+.+++++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|+||++|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 456899999999999999999999999999999999999988999999999999864
No 65
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=5.6e-05 Score=66.59 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=51.6
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus 51 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 34688999999999999999999999999999999999998899999999999874
No 66
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.77 E-value=4.9e-05 Score=68.75 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=52.6
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456789999999999999999999999999999999999998889999999999975
No 67
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.76 E-value=5.2e-05 Score=67.52 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=51.4
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++++++++.++++.|.+++...+||+|++++++|+||++|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4799999999999999999999999999998999999998899999999999965
No 68
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.76 E-value=4e-05 Score=82.74 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=54.6
Q ss_pred ccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 622 ~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
..++|+|+|++ +++++++++++.|+.+.|.+++.+.+||+|++|+++|+||.+|+++...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 66789999997 8999999999999999998888888888898899999999999988655
No 69
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.76 E-value=5.5e-05 Score=67.91 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=50.3
Q ss_pred ccchhccccCceEEcC--CCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLM--TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~--~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+++++|.++..++.. ++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4689999988888866 999999999999999999999998899999999999864
No 70
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.75 E-value=6.5e-05 Score=66.33 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=51.6
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|++|++|+.+
T Consensus 53 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 53 AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 35789999999999999999999999999989999999998899999999999864
No 71
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.75 E-value=5.5e-05 Score=68.47 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=52.5
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|++|++|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788999999999999999999999999999999999998899999999999875
No 72
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.73 E-value=6.7e-05 Score=84.64 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=57.9
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhhh
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~~ 685 (698)
++.+++++|++++++++++++++|+++.|.+++...+||||++|+++|+||.+|+.+.+.++..
T Consensus 193 ~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ 256 (449)
T TIGR00400 193 PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEAT 256 (449)
T ss_pred CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhH
Confidence 3457999999999999999999999999999999999999999999999999999998865443
No 73
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=5.9e-05 Score=68.58 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=51.7
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.++++++++++++.++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999998799999999999975
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.71 E-value=7.3e-05 Score=66.10 Aligned_cols=56 Identities=38% Similarity=0.407 Sum_probs=50.3
Q ss_pred cccchhccccCceEEcC-CCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLM-TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~-~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+.++.++|.+++..+.+ ++++.++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 45789999887777777 999999999999999999999998899999999999864
No 75
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.71 E-value=6.9e-05 Score=67.18 Aligned_cols=56 Identities=27% Similarity=0.228 Sum_probs=51.2
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC--CeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~--g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 345889999999999999999999999999999999999977 79999999999875
No 76
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.70 E-value=4.6e-05 Score=67.09 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=42.5
Q ss_pred ceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHH
Q 005409 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (698)
Q Consensus 634 ~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~ 678 (698)
+.++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7899999999999999999999999999987 89999999999864
No 77
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.70 E-value=6.2e-05 Score=67.02 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=51.1
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5789999999999999999999999999999999999998899999999999864
No 78
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=9.7e-05 Score=68.20 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=51.5
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|+||++|+.+
T Consensus 76 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 445899999999999999999999999999999999999997 99999999999975
No 79
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.69 E-value=7.3e-05 Score=66.55 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=51.0
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3599999999999999999999999999999999999998899999999999965
No 80
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.68 E-value=7.7e-05 Score=80.58 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=52.6
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
.+.+++|+|+++++++.+++++.|+++.|.+++.+.+||+| +++++|+||++|+.+.
T Consensus 267 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 267 RQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 45689999999999999999999999999999999999997 5899999999999864
No 81
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.68 E-value=8.4e-05 Score=69.74 Aligned_cols=105 Identities=22% Similarity=0.211 Sum_probs=70.5
Q ss_pred ccccccccccccccchhhhccc-----cccccccccccc-----cccccchh---hhhhhhccccchhccccCceEEcCC
Q 005409 574 QFEIYTSRTRGLSSSDLLAEEE-----PYAINLCEVESS-----LCIDDWNL---EVEELKRRVFVSEVMRTRYVTVLMT 640 (698)
Q Consensus 574 ~~~i~~~~~~~l~~~~lL~~~~-----~~~~~l~~v~~~-----l~~~d~~~---~~~~~~~~i~v~dvM~~~~~~v~~~ 640 (698)
..++|......+..+|-++... ...+.+|.+++. ++-+|+.+ +..+...+.+|+++|...+++++++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~ 146 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPD 146 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCC
Confidence 3445555554444444433322 123445555443 33334422 1225567899999999999999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 641 TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 641 ~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++..+.+++. .+.++.|+ ++|+++||||+.|+.+.++
T Consensus 147 ~~l~vI~~LL~--~~~AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 147 ESLNVISQLLE--EHPAVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCHHHHHHHHh--hCCeEEEE-eCCceEEEEeHHHHHHHHh
Confidence 99999988874 45678888 4799999999999999875
No 82
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.68 E-value=0.0001 Score=64.92 Aligned_cols=54 Identities=26% Similarity=0.215 Sum_probs=50.1
Q ss_pred cchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 625 ~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
++.++|.+.+..+.+++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 478999888889999999999999999999999999998899999999999864
No 83
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.67 E-value=6.8e-05 Score=66.86 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=51.0
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 46789999999999999999999999999999999999997 89999999999975
No 84
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=0.00011 Score=65.20 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=50.8
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 55 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 3588999999999999999999999999998899999998899999999999964
No 85
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.66 E-value=9e-05 Score=65.84 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=48.0
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..+.++| +++.++.+++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 57 ~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 4566766 46789999999999999999999999999998899999999999864
No 86
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.65 E-value=6.3e-05 Score=68.94 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=48.5
Q ss_pred ccccchhccccCceEE------cCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTV------LMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v------~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~ 678 (698)
...+++++|+++...+ .+++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3567999998765443 368999999999999999999999987 79999999999964
No 87
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=0.00011 Score=65.24 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=50.8
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||++|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45799999999999999999999999999999999999987 99999999999865
No 88
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.64 E-value=0.0001 Score=65.54 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=51.1
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.+++..+++++++.++++.|.+++.+.+||+|+ ++++|+||++|+.+
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 345788999999999999999999999999999999999985 89999999999875
No 89
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=8.5e-05 Score=67.08 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=51.7
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||++|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999997 99999999999975
No 90
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.63 E-value=9e-05 Score=65.89 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=52.0
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEcc-CCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~-~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|++|.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 36799999999999999999999999999999999999997 789999999999864
No 91
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.63 E-value=2.7e-05 Score=71.55 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=49.9
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHH---------HcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLML---------AEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~---------~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
.+.+++++|++++.++.+++++.++.+++. +.+...+||+|++|+++|+||++|+.++
T Consensus 57 ~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 467899999999999999999999998653 3356778899888999999999999875
No 92
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=7.7e-05 Score=69.17 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=51.7
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++.+++++.++++.|.+.+.+.+||+| +|+++|+||++|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 34679999999999999999999999999999999999999 799999999999865
No 93
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.62 E-value=0.00012 Score=64.95 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=51.1
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.++++++++++++.++++.|.+.+.+.+||+|+ ++++|++|++|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46799999999999999999999999999999999999987 89999999999874
No 94
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.62 E-value=0.00011 Score=79.13 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=53.1
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
..+++|+|+++++++.+++++.++++.|.+++.+.+||||++++++|+||++|+.+.
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 456899999999999999999999999999999999999988999999999999863
No 95
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.61 E-value=0.00012 Score=65.13 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=50.5
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|+||++|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 34788999999999999999999999999999999999987 89999999999863
No 96
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.00014 Score=64.75 Aligned_cols=56 Identities=38% Similarity=0.392 Sum_probs=50.7
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.+++..+++++++.++++.|.+++.+.+||+|++ +++|+|+++|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3467899999999999999999999999999999999999865 9999999999864
No 97
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.61 E-value=0.00011 Score=82.96 Aligned_cols=59 Identities=34% Similarity=0.333 Sum_probs=55.4
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
.+++|+|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||++|+.+....
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 56999999999999999999999999999999999999988999999999999987654
No 98
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.61 E-value=0.00013 Score=82.36 Aligned_cols=61 Identities=28% Similarity=0.280 Sum_probs=56.2
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHh
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~ 683 (698)
..+++++|+++++++++++++.|++++|.+++.+.+||+|++++++|+||++|+.+.....
T Consensus 145 ~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 145 FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 3579999999999999999999999999999999999999889999999999999876543
No 99
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00014 Score=63.74 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=49.7
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~ 677 (698)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+||++|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4688999999999999999999999999999999999997 9999999999986
No 100
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.60 E-value=9.3e-05 Score=69.47 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=56.3
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
..++++++|+++++.+++++++.+++++|++++.+++||+++ ++++|-||.+|+.+..-+
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le 122 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE 122 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhc
Confidence 678999999999999999999999999999999999999986 899999999999987743
No 101
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.60 E-value=0.00015 Score=67.65 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=50.9
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..+++++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+||++|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45799999999999999999999999999999999999987 89999999999865
No 102
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00015 Score=64.54 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=51.3
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.++++++.+++++.++++.|.+++...+||+|++|+++|++|++|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 45788999999999999999999999999888899999998899999999999864
No 103
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00014 Score=66.53 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=47.6
Q ss_pred hhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 627 ~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+.|.+++.++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 3567788999999999999999999999999999998899999999999864
No 104
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.57 E-value=0.00018 Score=63.74 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=51.1
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999865
No 105
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.57 E-value=9e-05 Score=84.21 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=57.0
Q ss_pred ccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhh
Q 005409 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (698)
Q Consensus 622 ~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~ 684 (698)
.+.+++|+|++ +++++++++++.|++++|.+++.+.+||+|++++++|+||++|+.+...+..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~ 221 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPN 221 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCch
Confidence 35689999997 8999999999999999999999999999999999999999999998765443
No 106
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00012 Score=65.50 Aligned_cols=54 Identities=28% Similarity=0.421 Sum_probs=48.3
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++++.|.+. +.+||+|++++++|+||++|+.+
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~--~~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQ--PFLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcC--CceeEEeCCCeEEEEEEHHHhhc
Confidence 4578999999999999999999999999764 46999998899999999999875
No 107
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.57 E-value=8.9e-05 Score=77.64 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=54.3
Q ss_pred cccchhccccC-ceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 623 RVFVSEVMRTR-YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 623 ~i~v~dvM~~~-~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
.++++|+|+++ ++++++++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 47899999998 999999999999999998888999999998899999999999988654
No 108
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00013 Score=65.97 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=51.2
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.++++.+.+++++.++++.|.+.+...+||+|++++++|++|++|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999975
No 109
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.56 E-value=0.00017 Score=64.44 Aligned_cols=52 Identities=46% Similarity=0.515 Sum_probs=49.2
Q ss_pred cchhccccCceEEcCCCCHHHHHHHHHH-cCCCEEEEEccCC-eEEEEEeHHHH
Q 005409 625 FVSEVMRTRYVTVLMTTLLIEALTLMLA-EKQSCAMIVDNDN-ILIGLLTLGDI 676 (698)
Q Consensus 625 ~v~dvM~~~~~~v~~~~~l~eal~~m~~-~~~~~lpVVd~~g-~lvGiVt~~dl 676 (698)
++.++|+++++++.+++++.++.+.|.+ ++.+.+||+|+++ +++|++|++|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 5899999999999999999999999999 6999999999886 99999999997
No 110
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.56 E-value=0.00016 Score=63.69 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=48.9
Q ss_pred cchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 625 ~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
++.++|.++..++++++++.++++.|.+++.+.+||+| +|+++|+||++|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57889999999999999999999999999999999998 589999999999864
No 111
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.54 E-value=0.00029 Score=65.90 Aligned_cols=51 Identities=57% Similarity=0.834 Sum_probs=46.3
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
+++.++++++++.++++.|.+++...+||+|++++++|+||.+|+.+....
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 367899999999999999998889999999998999999999999987753
No 112
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.54 E-value=0.00023 Score=64.38 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=45.2
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.|+.+.|.+++.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 5688999999999999999999999999998899999999999998654
No 113
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.54 E-value=0.00015 Score=66.33 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=50.6
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEc--cCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~dl~~ 678 (698)
.+.+++++|.++++++++++++.++++.|.+++...+||++ ++++++|+||++|+.+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 34578999999999999999999999999999889999985 4689999999999864
No 114
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.51 E-value=0.00023 Score=64.20 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=51.4
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++.+++++.++++.|.+.+.+.+||+|+ ++++|++|.+|+.+
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 456799999999999999999999999999999999999987 89999999999864
No 115
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.51 E-value=0.00023 Score=62.65 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l 680 (698)
.++++++++++.++.+.|.+++.+.+||+|++ ++++|+||.+|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 46789999999999999999999999999975 8999999999998753
No 116
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.49 E-value=0.0002 Score=80.89 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=57.3
Q ss_pred hhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 620 ~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
.++.++++|+|++++.++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+.+.
T Consensus 331 ~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 331 VLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred HhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 37789999999999999999999999999999888999999998899999999999998654
No 117
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.48 E-value=0.00033 Score=51.44 Aligned_cols=47 Identities=34% Similarity=0.323 Sum_probs=42.6
Q ss_pred ceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 634 ~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+.++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999889999999999997654
No 118
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.47 E-value=0.00018 Score=63.42 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=47.1
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..++.++|.+++.++++++++.++.+.|.+ . ...||+|++++++|+||++|+.+
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 357889999999999999999999999977 3 34789988899999999999975
No 119
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00016 Score=80.63 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=60.0
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhhhh
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK 686 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~~~ 686 (698)
++..++|+|.+++++++++++.+|+.+.+++++.-..||||++++++|+||.+|+.+.++++...
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~e 258 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATE 258 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999866543
No 120
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.47 E-value=0.00025 Score=82.18 Aligned_cols=59 Identities=29% Similarity=0.282 Sum_probs=55.4
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
.+++|+|.++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+.+..
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence 57999999999999999999999999999999999999988999999999999987654
No 121
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.47 E-value=0.00021 Score=82.81 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=57.4
Q ss_pred hhhccccchhccc-cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 619 ELKRRVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 619 ~~~~~i~v~dvM~-~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
......+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+.+..+
T Consensus 241 ~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 241 LINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred HhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 3445788999999 89999999999999999999999999999999999999999999998654
No 122
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00026 Score=61.85 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=42.5
Q ss_pred ceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 634 ~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+.++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 789999999999999999999999999998899999999999864
No 123
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00033 Score=63.01 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=49.3
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCC---EEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQS---CAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~---~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+.++.++|.+++.++++++++.++++.|.+++.. ..||+|++++++|+||++|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 45679999999999999999999999999877653 4468888899999999999864
No 124
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.38 E-value=0.00034 Score=62.17 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=45.8
Q ss_pred ccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 629 vM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+|.+++.++++++++.++.+.|.+++.+.+||++ +|+++|+||++|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 8888999999999999999999999999999995 689999999999975
No 125
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.36 E-value=0.00057 Score=62.70 Aligned_cols=51 Identities=25% Similarity=0.308 Sum_probs=46.0
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
+++.++++++++.++.+.|.+++...+||+|++++++|+|+.+|+.+...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 467889999999999999999999999999988999999999999876553
No 126
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00051 Score=61.04 Aligned_cols=50 Identities=34% Similarity=0.303 Sum_probs=44.9
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
++.+++++++++++.+.|.+.+.+.+||+|++++++|+|+.+|+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 56789999999999999988888999999988999999999999876543
No 127
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.33 E-value=0.0003 Score=79.28 Aligned_cols=61 Identities=33% Similarity=0.382 Sum_probs=56.0
Q ss_pred ccccchhccc-cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 622 RRVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 622 ~~i~v~dvM~-~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
...+++++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+....
T Consensus 141 ~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 141 KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF 202 (450)
T ss_pred CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence 3567999999 599999999999999999999999999999999999999999999987653
No 128
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.31 E-value=0.00056 Score=59.72 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=43.5
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
++++++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 367889999999999999988888999999988999999999998763
No 129
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.31 E-value=0.00037 Score=74.07 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=51.9
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
..+++++|.+ +.++++++++.++++.|++++.+.+||+|+.|.++|+||++|+.+.+-
T Consensus 132 ~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv 189 (292)
T PRK15094 132 AFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189 (292)
T ss_pred cCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence 3458899975 458999999999999999999999999998899999999999999774
No 130
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.22 E-value=0.00072 Score=59.10 Aligned_cols=53 Identities=38% Similarity=0.421 Sum_probs=49.5
Q ss_pred chhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 626 v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+.++|..++.++++++++.++++.|.+.+.+.+||+|++++++|+++++|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 67889999999999999999999999999999999998899999999999865
No 131
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.21 E-value=0.00069 Score=76.62 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=55.8
Q ss_pred hhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 618 ~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+..+.++++++|.+++++++++++++|+.+.|.+++.+.+||+|++++++|+||.+|+..
T Consensus 83 ~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 83 AEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred HHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 3456788899999999999999999999999999999999999999899999999999864
No 132
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.17 E-value=0.00072 Score=77.08 Aligned_cols=60 Identities=40% Similarity=0.455 Sum_probs=55.4
Q ss_pred cccchhccc-cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 623 ~i~v~dvM~-~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
..+++|+|+ ++++++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+....
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF 206 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC
Confidence 457999998 788999999999999999999999999999999999999999999987654
No 133
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00091 Score=58.90 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=48.8
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||++|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 3578889999999999999999999999999999999985 79999999999864
No 134
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.17 E-value=0.00075 Score=59.87 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=44.9
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+++|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF 50 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh
Confidence 35678999999999999999888899999998899999999999987654
No 135
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.001 Score=62.50 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=51.2
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
...++.++|.++++++++++++.++++.|.+.+...+||+|+ ++++|+|+++|+.+
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 356789999999999999999999999999999999999987 89999999999864
No 136
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.15 E-value=0.0014 Score=57.89 Aligned_cols=50 Identities=30% Similarity=0.350 Sum_probs=45.1
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++++.|.+++...+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 56788999999999999998888899999998899999999999987654
No 137
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.15 E-value=0.00082 Score=71.47 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=54.7
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
+...+|+|+|++ ++.+++++++++++.+.+.+++++.+||++++ ++++|+|+.+|+.....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 456799999998 68999999999999999999999999999876 68999999999987553
No 138
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.001 Score=59.02 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=44.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.+++++++++++.+.|.+++.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 5678999999999999999889999999998899999999999987654
No 139
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.0012 Score=58.42 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=44.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 5678899999999999998888999999998899999999999987654
No 140
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.14 E-value=0.00078 Score=75.05 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=54.7
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
.++.+|+|+|++ ++.+++.+++++|+.+.+.+++++++||++++ ++++|+|+.+|+.....
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 457899999997 78999999999999999999999999999864 68999999999987543
No 141
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.0012 Score=59.20 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=44.1
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
.+.++++++++.++.+.|.+++...+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 3567899999999999999999999999999999999999999987654
No 142
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.0015 Score=58.26 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=44.6
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 5678999999999999999889999999998899999999999987654
No 143
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00049 Score=73.61 Aligned_cols=86 Identities=23% Similarity=0.259 Sum_probs=70.1
Q ss_pred cccccchhhhhhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhhhhc
Q 005409 608 LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT 687 (698)
Q Consensus 608 l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~~~~ 687 (698)
++-+|+... ..+...+.|+|+++.++.+...+++|+-+++.+.+...+||||++++++-+++|+|+++...+.....
T Consensus 158 vtsrdi~f~---~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask 234 (503)
T KOG2550|consen 158 ITSRDIQFL---EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASK 234 (503)
T ss_pred Eehhhhhhh---hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCcccc
Confidence 344555322 23467799999999999999999999999999999999999999999999999999999877666655
Q ss_pred cCccccccC
Q 005409 688 SRSKNVEWG 696 (698)
Q Consensus 688 ~~v~ev~~~ 696 (698)
...++.+||
T Consensus 235 ~~~kqll~g 243 (503)
T KOG2550|consen 235 DSTKQLLCG 243 (503)
T ss_pred Ccccceeee
Confidence 556666665
No 144
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.06 E-value=0.0015 Score=57.31 Aligned_cols=48 Identities=27% Similarity=0.265 Sum_probs=43.5
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
++++++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 366789999999999999988888999999988999999999999875
No 145
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0014 Score=58.57 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=42.9
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 45788999999999999988888999999988999999999999874
No 146
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0019 Score=58.99 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=44.0
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
++.++++++++.++++.|.+.+.+.+||+|++++++|+||..|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 567899999999999999999999999999889999999999998764
No 147
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.0019 Score=58.45 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=45.3
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++.+.|.+.+.+.+||+|++|+++|+|+.+|+.+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 57789999999999999999888899999998899999999999987654
No 148
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0024 Score=57.10 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=44.6
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVV 51 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHH
Confidence 356889999999999999988889999999987 89999999999988553
No 149
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0015 Score=59.61 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=44.8
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++++.|.+++...+||+|++++++|+|+..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 5678999999999999999888999999998899999999999998663
No 150
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.96 E-value=0.0023 Score=57.16 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=44.6
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 5678999999999999999888999999998899999999999988654
No 151
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.95 E-value=0.0027 Score=57.28 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=44.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++...+||+|++++++|+||..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 4678999999999999998888899999998899999999999988764
No 152
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.94 E-value=0.002 Score=57.38 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=43.6
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL 51 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence 3567899999999999998888899999998899999999999987654
No 153
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0022 Score=56.92 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=43.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA 49 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence 467889999999999999998999999999889999999999998754
No 154
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.94 E-value=0.0022 Score=57.29 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=43.1
Q ss_pred CceEEcCCCCHHHHHHHHHHcC-CCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++ ...+||+|++++++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 5678999999999999987664 788999998899999999999988654
No 155
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.92 E-value=0.0021 Score=56.89 Aligned_cols=49 Identities=31% Similarity=0.320 Sum_probs=44.2
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.+++++++++|+.+.|.+.+...+||+|++++++|+|+..|+.+.+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA 50 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence 5678999999999999998888899999998899999999999988654
No 156
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.0022 Score=58.09 Aligned_cols=49 Identities=31% Similarity=0.373 Sum_probs=44.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.|+++.|.+.+.+.+||+|++ ++++|+|+++|+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 56789999999999999998888999999987 99999999999987664
No 157
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0021 Score=59.47 Aligned_cols=49 Identities=37% Similarity=0.428 Sum_probs=44.6
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+++|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence 5678899999999999999999999999999889999999999998754
No 158
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.90 E-value=0.0031 Score=55.78 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=45.2
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++.+.|.+.+...+||+|++ ++++|+++.+|+.+...
T Consensus 1 ~~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 1 TDIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred CceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 356789999999999999988888999999988 99999999999998764
No 159
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.87 E-value=0.0028 Score=56.06 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=44.0
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.+++.++++.++.+.|.+++...+||+|+ ++++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~ 50 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR 50 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHh
Confidence 46788999999999999998888899999998 99999999999987654
No 160
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0025 Score=57.41 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=44.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 5678999999999999999999999999998899999999999988653
No 161
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0031 Score=57.21 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=44.0
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++++.|.+.+...+||+|++ ++++|+|+.+|+.+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence 56789999999999999988888999999987 89999999999988654
No 162
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.84 E-value=0.0019 Score=67.50 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=47.4
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEe
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt 672 (698)
...+++|+|.++++++.+++++.|+++.|.+++.+.+||+|++|+++|+|+
T Consensus 218 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 356799999999999999999999999999999999999998899999985
No 163
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.83 E-value=0.003 Score=55.75 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=43.3
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence 5678999999999999999888899999987 89999999999988764
No 164
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.83 E-value=0.0023 Score=57.65 Aligned_cols=48 Identities=25% Similarity=0.221 Sum_probs=43.5
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
+++.++++++++.++.+.|.+.+.+.+||+|++++++|+++++|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 356789999999999999988888999999988999999999999864
No 165
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.83 E-value=0.0029 Score=56.18 Aligned_cols=49 Identities=27% Similarity=0.244 Sum_probs=43.9
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 5678999999999999998888889999998899999999999987553
No 166
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.82 E-value=0.0039 Score=54.76 Aligned_cols=49 Identities=33% Similarity=0.474 Sum_probs=44.1
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+++.++++++++.++.+.|.+.+...+||+|++++++|+|+.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 4667899999999999999988889999999889999999999998754
No 167
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.82 E-value=0.0028 Score=59.03 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=44.7
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++++.|.+.+...+||+|++++++|+|+..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 5678999999999999999888899999999899999999999998664
No 168
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.80 E-value=0.0032 Score=57.49 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=42.2
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999998888899999998899999999999985
No 169
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.78 E-value=0.0028 Score=58.39 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=44.6
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+..|+.+...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh
Confidence 5678999999999999998888899999998899999999999988664
No 170
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.77 E-value=0.0033 Score=55.54 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=43.4
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
.++.+++++++++++.+.|.+++.+.+||+|++++++|+|+.+|+...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 366889999999999999998888999999988999999999999753
No 171
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.74 E-value=0.003 Score=70.39 Aligned_cols=58 Identities=26% Similarity=0.156 Sum_probs=52.2
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
..+++++|+ ++.++++++++.++++.|++++.+..+|+|+.|..+|+||.+|+.+.+-
T Consensus 254 ~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 254 NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 356788886 5789999999999999999999999999999899999999999998773
No 172
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.73 E-value=0.0031 Score=71.91 Aligned_cols=56 Identities=32% Similarity=0.251 Sum_probs=51.8
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
-..++|+|.+++++++++++++|+.+.|.+++++.+||+|++++++|+||.+|+..
T Consensus 86 vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 86 VKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred hhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 34578899999999999999999999999999999999999999999999999964
No 173
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.72 E-value=0.0052 Score=54.26 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=43.9
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~ 49 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIA 49 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHh
Confidence 35678999999999999999888999999998 99999999999988654
No 174
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.69 E-value=0.006 Score=53.14 Aligned_cols=50 Identities=34% Similarity=0.334 Sum_probs=44.8
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
++.++++++++.++.+.|.+.+...+||+|++++++|+++++|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 46788999999999999998888999999988999999999999987653
No 175
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.67 E-value=0.005 Score=54.31 Aligned_cols=49 Identities=33% Similarity=0.469 Sum_probs=43.8
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA 49 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence 35678999999999999999888899999998 99999999999987654
No 176
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.66 E-value=0.002 Score=71.90 Aligned_cols=71 Identities=25% Similarity=0.255 Sum_probs=60.8
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH-HHhhhhccCcccc
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS-KYAQAKTSRSKNV 693 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l-~~~~~~~~~v~ev 693 (698)
..++.++|+.++++++++.++.+|.+.|.+.+.+.+.++|+++...||||++|++... .+.++.+.++.|+
T Consensus 148 ~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~ev 219 (610)
T COG2905 148 LTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEV 219 (610)
T ss_pred HHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhh
Confidence 4678999999999999999999999999999999999999999999999999999755 4455555555554
No 177
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.66 E-value=0.0048 Score=54.65 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=41.3
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~ 677 (698)
+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++++|+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~ 45 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIV 45 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHH
Confidence 35678999999999999999888999999997 9999999999986
No 178
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.65 E-value=0.0045 Score=58.13 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=44.4
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++++++++++++.++.+.|.+.+...+||+|+ ++++|++++.|+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 35678999999999999999999999999997 99999999999988764
No 179
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.64 E-value=0.0041 Score=68.13 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=53.1
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
-.+.+.|.++..++++++++.+++..+.+++.. +||+|++|+++|+||+.++.+.+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 302 QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 358888888899999999999999999998888 9999999999999999999998764
No 180
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.64 E-value=0.0065 Score=54.80 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=42.8
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+++++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~ 48 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAI 48 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHH
Confidence 5678999999999999999888899999997 8999999999998754
No 181
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.61 E-value=0.0044 Score=69.98 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=52.8
Q ss_pred hhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC---CeEEEEEeHHHHHH
Q 005409 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (698)
Q Consensus 620 ~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dl~~ 678 (698)
...-.+.++.|.+++.+++++++++|+++.|.+++++.+||+|++ ++++|+||.+|+..
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 334456788999999999999999999999999999999999987 79999999999975
No 182
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.60 E-value=0.0036 Score=69.98 Aligned_cols=73 Identities=27% Similarity=0.349 Sum_probs=60.5
Q ss_pred cccccchhhh--hhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 608 LCIDDWNLEV--EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 608 l~~~d~~~~~--~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++-+|...+. +-...+.+|+++|+.++++++..+-+-||+-.|.+++.+++||++ +|+.+|+||.+||++...
T Consensus 196 vT~~dl~~~v~~~g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 196 VTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred eehHHHHHHHHhcCCCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 4445553321 223457889999999999999999999999999999999999997 599999999999998754
No 183
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.59 E-value=0.006 Score=53.61 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=43.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence 4578999999999999999989999999997 99999999999998754
No 184
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.58 E-value=0.0024 Score=67.33 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=53.4
Q ss_pred ccccchhccc--cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 622 RRVFVSEVMR--TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 622 ~~i~v~dvM~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
+-++|+|+|+ .+..++.+++++++..++-.++++++|||+|+..+++|+||-+|+.+.
T Consensus 186 dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~ 245 (432)
T COG4109 186 DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK 245 (432)
T ss_pred heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC
Confidence 4568999999 688999999999999999999999999999999999999999999764
No 185
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.57 E-value=0.0055 Score=55.04 Aligned_cols=48 Identities=35% Similarity=0.427 Sum_probs=43.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 567899999999999999888889999999889999999999998754
No 186
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.54 E-value=0.0058 Score=54.14 Aligned_cols=50 Identities=28% Similarity=0.291 Sum_probs=44.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~ 682 (698)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK 52 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence 45778999999999999988888899999988999999999999987653
No 187
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.50 E-value=0.007 Score=54.16 Aligned_cols=48 Identities=33% Similarity=0.346 Sum_probs=43.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++++.|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 5678999999999999999888899999997 99999999999987654
No 188
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.00081 Score=75.58 Aligned_cols=111 Identities=23% Similarity=0.173 Sum_probs=83.5
Q ss_pred HHhhccccCcHHHHHHHHccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHhhHHHHHHHHHHHHhhhc
Q 005409 405 LMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQ 484 (698)
Q Consensus 405 ~~~P~~~g~G~~~i~~ll~~~~~~~~~s~~~l~~~~~~K~l~t~lt~gsG~~GG~f~Psl~iGA~~G~~~g~~~~~~~p~ 484 (698)
.+.|..-|+|...++-.+++-.. ....-.+.++.|-++..+++++|.+-|-++|++.++.++|.++.+++...--
T Consensus 150 ~~AP~A~gSGIpEIK~ilSGf~~----~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~- 224 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILSGFII----RGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRL- 224 (696)
T ss_pred heehhhhcCCCccceeeeccchh----hhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhcc-
Confidence 44566777777766666655321 1123345678899999999999999999999999999999999988764311
Q ss_pred CCCccccccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Q 005409 485 SNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (698)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~alvGaaA~la~v~~aPls~~vi~~Eltg 530 (698)
..+-..-+....|||..+.+++||+.++++.+|-.-
T Consensus 225 ----------~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~ 260 (696)
T KOG0475|consen 225 ----------NEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS 260 (696)
T ss_pred ----------chhHHHHHHHHHhhccchhhcCCccceeeeehhhhh
Confidence 112234556677888999999999999999999654
No 189
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.46 E-value=0.0095 Score=52.63 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=42.8
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+++.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 36778999999999999998888889999987 9999999999998754
No 190
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.45 E-value=0.0076 Score=54.00 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=42.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcC-CCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++++++++++.++.+.|.+.+ .+.+||+|+ ++++|+|+.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 5677899999999999998776 789999998 99999999999987544
No 191
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.41 E-value=0.011 Score=52.26 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=42.8
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++++++++++++|+.+.|.+++...++|+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence 5678999999999999998888889999997 89999999999987653
No 192
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.37 E-value=0.01 Score=53.36 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=43.1
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence 5678999999999999998888899999997 99999999999987654
No 193
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.34 E-value=0.012 Score=52.06 Aligned_cols=46 Identities=37% Similarity=0.484 Sum_probs=41.5
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 5678999999999999998888889999997 999999999999753
No 194
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.32 E-value=0.013 Score=52.07 Aligned_cols=56 Identities=29% Similarity=0.323 Sum_probs=49.3
Q ss_pred hccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhh
Q 005409 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (698)
Q Consensus 628 dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~ 684 (698)
+.|.++++++.++.++.++...|.+++...+||+++ ++++|++|..|+.+......
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG 58 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence 455588999999999999999999999999999974 48999999999999876443
No 195
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.29 E-value=0.014 Score=51.56 Aligned_cols=47 Identities=26% Similarity=0.303 Sum_probs=42.1
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV 48 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 5678999999999999999888899999986 4999999999998855
No 196
>PRK11573 hypothetical protein; Provisional
Probab=96.28 E-value=0.0093 Score=66.57 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=54.2
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHH
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSK 681 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~ 681 (698)
.++.+|+|+|++ ++.+++.+++++|+.+.+.+++++++||.+++ ++++|+|..+|+.....
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 467899999986 78899999999999999999999999999754 68999999999987543
No 197
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.27 E-value=0.012 Score=51.43 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=41.1
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
++.++++++++.++++.|.+.+...+||+| +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567899999999999999888888999998 5899999999999763
No 198
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.24 E-value=0.0093 Score=67.99 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=50.0
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC---CeEEEEEeHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dl~~ 678 (698)
-...++.|.++++++++++++.|+.+.|.+++++.+||+|++ ++++|+||.+|+..
T Consensus 95 vk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 95 VKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred ccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence 344778899999999999999999999999999999999974 79999999999863
No 199
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.22 E-value=0.011 Score=52.00 Aligned_cols=47 Identities=32% Similarity=0.330 Sum_probs=42.3
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF 48 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence 46678999999999999998888899999998899999999999864
No 200
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.20 E-value=0.012 Score=52.16 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=43.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEcc---CCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dl~~~l~ 681 (698)
....+++++++.++.+.+.+.+...+||+|+ +++++|+|+++|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~ 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence 4567899999999999998888889999998 689999999999987654
No 201
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.15 E-value=0.012 Score=52.42 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=41.7
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEcc---CCeEEEEEeHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEE 678 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dl~~ 678 (698)
.++.++.+++++.++++.|.+.+...+||+|+ +++++|+|+.+|+..
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 35678899999999999998888889999997 789999999999874
No 202
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.15 E-value=0.0093 Score=67.39 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred hccccchhccccCceEEcCCCCHHHHHHHHHH-----cCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLA-----EKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 621 ~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~-----~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
.+..+++++|++++.+++++++++|+.+.|++ ++...+||+|++++++|+|+.+|+..
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL 190 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence 34578999999999999999999999999975 23457889998899999999999864
No 203
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.12 E-value=0.015 Score=50.98 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=40.1
Q ss_pred eEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 635 ~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
.++++++++.++.+.|.+.+...+||+|+ ++++|+|+.+|+.+.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 46899999999999999888999999998 999999999999763
No 204
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.012 Score=65.34 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=52.4
Q ss_pred ccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHh
Q 005409 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 624 i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~ 683 (698)
.++.+.|.++..++++++++++++..+.+.... +||||++|+++|+||+.++.+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 337 QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 367888888889999999999999999886666 99999999999999999999988643
No 205
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.08 E-value=0.011 Score=66.84 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=52.2
Q ss_pred hhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 619 ~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+..+.+++.++|.+++++++++++++|+.+.|.+++.+.+||+|+ ++++|+||.+|+..
T Consensus 83 e~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~ 141 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLG 141 (475)
T ss_pred HHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhc
Confidence 345678899999999999999999999999999888888888874 79999999999853
No 206
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.07 E-value=0.011 Score=66.88 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=46.9
Q ss_pred cccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 623 ~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
+.++.++|++++.++++++++.++++.|.+++ .|||+++++++|+||++|+.+.+
T Consensus 399 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 399 DDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 45799999999999999999999999997643 35566679999999999998864
No 207
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.04 E-value=0.0095 Score=67.90 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=47.3
Q ss_pred cchhccc---cCceEEcCCCCHHHHHHHHHHcCCCEEEEEcc---CCeEEEEEeHHHHHH
Q 005409 625 FVSEVMR---TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEE 678 (698)
Q Consensus 625 ~v~dvM~---~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dl~~ 678 (698)
+|+++|. .+++++++++++.|+++.|.+++++.+||+|+ +++++|+||..|++.
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI 154 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc
Confidence 4677775 45679999999999999999999999999996 589999999999964
No 208
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.03 E-value=0.014 Score=66.76 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=48.0
Q ss_pred chhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEcc---CCeEEEEEeHHHHHHH
Q 005409 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEF 679 (698)
Q Consensus 626 v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dl~~~ 679 (698)
.+..|.+++++++++++++|+.+.|.+++.+.+||+|+ +++++|+||.+|+...
T Consensus 102 ~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v 158 (505)
T PLN02274 102 RRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV 158 (505)
T ss_pred ccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc
Confidence 34558899999999999999999999999999999987 4799999999999653
No 209
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.03 E-value=0.02 Score=50.20 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=41.7
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
+..++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 45788999999999999988888899999988999999999998753
No 210
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.99 E-value=0.01 Score=52.41 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=36.4
Q ss_pred EcCCCCHHHHHHHHHHcC-----CCEEEEEccCCeEEEEEeHHHHHH
Q 005409 637 VLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 637 v~~~~~l~eal~~m~~~~-----~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+.+++++.|+++.|.+++ ...+||+|++++++|+|+.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence 578999999999998766 367999998899999999999875
No 211
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.87 E-value=0.022 Score=49.76 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=41.2
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
+++.+++.+++++++.+.|.+.+...+||+|+ ++++|+++.+|+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46788999999999999998888888999987 99999999999874
No 212
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.84 E-value=0.031 Score=49.41 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=40.4
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+..++++++++.++.+.|.+++...++|.+ +++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMA 49 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHH
Confidence 457899999999999999877777776665 599999999999987654
No 213
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.81 E-value=0.028 Score=49.97 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=40.3
Q ss_pred CceEEcCCCCHHHHHHHHHHcC-CCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.++++++++.++.+.|.+++ ...+||+| +++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHh
Confidence 5678999999999999998777 56677776 589999999999987654
No 214
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=95.71 E-value=0.021 Score=64.21 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=56.1
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEc-cCCeEEEEEeHHHHHHHHHHh
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-~~g~lvGiVt~~dl~~~l~~~ 683 (698)
+++.+|+++|++ ++..++.+.+.+++.+.+.+++++++||++ +.+.++|+|..+|+.....+.
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 467889999986 678999999999999999999999999999 456899999999999887654
No 215
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.13 E-value=0.11 Score=58.44 Aligned_cols=49 Identities=31% Similarity=0.224 Sum_probs=46.2
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++..+++++++.++++.|++++.+...|+|+.|...|+||.+|+.+.+-
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999998764
No 216
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=94.09 E-value=0.11 Score=57.30 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=48.1
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHh
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~ 683 (698)
..++++.+++++.++++.|...+.+++.|||++|.++|+||..|+..++...
T Consensus 310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 3578999999999999999999999999999999999999999999988744
No 217
>PRK11573 hypothetical protein; Provisional
Probab=93.96 E-value=0.11 Score=57.98 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=47.8
Q ss_pred hhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 627 ~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
.++| +++..+++++++.++++.|++++.+...|+|+.|...|+||.+|+.+.+-
T Consensus 258 ~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 258 LRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred Hhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence 3454 46789999999999999999999999999999999999999999998663
No 218
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.039 Score=55.53 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=53.9
Q ss_pred ccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHHH
Q 005409 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKY 682 (698)
Q Consensus 622 ~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~~ 682 (698)
.++.|+|+|.+ ..+++..+.++.+.+..+.+..|++|||+.++ +.+.|++-.+|++++++.
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC
Confidence 45789999987 56899999999999999999999999999754 579999999999998753
No 219
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.066 Score=57.43 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=56.4
Q ss_pred hccccchhcccc--CceEEcCCCCHHHHHHHHHHcCCCEEEEEccC-CeEEEEEeHHHHHHHHHHhh
Q 005409 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQ 684 (698)
Q Consensus 621 ~~~i~v~dvM~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dl~~~l~~~~ 684 (698)
++.++|+|+|.+ ++..+..+++.+++++.+....|.++|+..++ +.++|++..+|+.+.+.+.+
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 567899999986 67899999999999999999999999999653 56999999999999987554
No 220
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=93.31 E-value=0.13 Score=57.64 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=49.9
Q ss_pred ccccchhccccCceEEcCCCCHHHHHHHHHHcC-----CCEEEEEccCCeEEEEEeHHHHHH
Q 005409 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEE 678 (698)
Q Consensus 622 ~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~-----~~~lpVVd~~g~lvGiVt~~dl~~ 678 (698)
..-++..+|++++++++++.|+.++++.+++.. ...++|+|++++++|+|+.+++..
T Consensus 130 ~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~ 191 (451)
T COG2239 130 PEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT 191 (451)
T ss_pred ChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc
Confidence 345689999999999999999999999998443 467999999999999999999983
No 221
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=92.89 E-value=0.11 Score=48.42 Aligned_cols=35 Identities=23% Similarity=0.043 Sum_probs=31.8
Q ss_pred cccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC
Q 005409 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND 664 (698)
Q Consensus 630 M~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~ 664 (698)
|.++++++++++++.|+++.|.+++.+.+||+|++
T Consensus 84 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 84 QECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 45778999999999999999999999999999853
No 222
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=92.66 E-value=0.22 Score=53.60 Aligned_cols=57 Identities=28% Similarity=0.276 Sum_probs=49.2
Q ss_pred ccchhccc--cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHH
Q 005409 624 VFVSEVMR--TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (698)
Q Consensus 624 i~v~dvM~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l 680 (698)
.+-.|+++ .++..+++.+++.+-+..|++++.+.-.|||+-|.+.|+||.+|+.+.+
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence 34445553 5788999999999999999999999999999999999999999998755
No 223
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.66 E-value=0.32 Score=53.74 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=45.3
Q ss_pred cchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 625 ~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
++.+ +.++..++++++++.|++..+.++.. -++|+|+ |+++|+|++.++.+.+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 4666 67788899999999999998876554 4888885 99999999999998764
No 224
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=90.86 E-value=0.31 Score=53.83 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=47.7
Q ss_pred CceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHHHhh
Q 005409 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (698)
Q Consensus 633 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~~~~ 684 (698)
++..+..++++.+++++|.+.+.+.+||||+.++.+|.+++.|+....++..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~ 289 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT 289 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence 6788999999999999999999999999999998999999999998876543
No 225
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=90.42 E-value=0.62 Score=47.13 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=61.2
Q ss_pred cccccccccccc-------cccccchhhhhhhhccccchhccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEE
Q 005409 596 PYAINLCEVESS-------LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILI 668 (698)
Q Consensus 596 ~~~~~l~~v~~~-------l~~~d~~~~~~~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lv 668 (698)
+.|+.+|.+.+. +.-+|+.....+......++++. ++.+.+++.-.+...++-|+.++.+...|+|+-|.+.
T Consensus 98 saHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVs 176 (293)
T COG4535 98 SAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVS 176 (293)
T ss_pred hccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCee
Confidence 356777766543 22344433223333446677766 4557789999999999999999989999999999999
Q ss_pred EEEeHHHHHHHH
Q 005409 669 GLLTLGDIEEFS 680 (698)
Q Consensus 669 GiVt~~dl~~~l 680 (698)
|+||.+|+++.+
T Consensus 177 GLVTIEDiLEqI 188 (293)
T COG4535 177 GLVTIEDILEQI 188 (293)
T ss_pred eeEEHHHHHHHH
Confidence 999999998755
No 226
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=83.75 E-value=1.8 Score=44.74 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=40.8
Q ss_pred ccccchhccccCc----eEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHH
Q 005409 622 RRVFVSEVMRTRY----VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (698)
Q Consensus 622 ~~i~v~dvM~~~~----~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~ 679 (698)
...++.|.|.+.. -.+.....-.+++..+...+...+||+|++|+++|.||++++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 3445555555432 223344455567766777888899999999999999999999753
No 227
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.74 E-value=1.9 Score=45.91 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=44.5
Q ss_pred ccccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 629 vM~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
.+.+++.++..++++.+.+....+ ....++|+|++++++|+|++.++...+.
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~-~~~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQ-APCPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhc-CCCceeEEcCCCcEEEEecHHHHHHHHh
Confidence 566788899999999999988764 4467889999999999999999998765
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=79.90 E-value=3.8 Score=45.65 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=47.0
Q ss_pred ccchhccccCce---EEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 624 VFVSEVMRTRYV---TVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 624 i~v~dvM~~~~~---~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
+++.++|.+... ...++.+..++++.|.+.+.+.++|+|+++++.|+|+.+++.+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh
Confidence 567777754332 3346778999999999999999999999999999999999986643
No 229
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=75.01 E-value=2.5 Score=46.07 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=42.3
Q ss_pred cCceEEcCCCCHHHHHHHHHHcCCCEEEEEccC---CeEEEEEeHHHHHHH
Q 005409 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEF 679 (698)
Q Consensus 632 ~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dl~~~ 679 (698)
.+++.++|+.++.++++...++....+||.++. .+|+|+||.+|+.-.
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence 577889999999999999999999999999753 479999999999654
No 230
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=71.62 E-value=10 Score=41.70 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=43.4
Q ss_pred cccCceEEcCCCCHHHHHHHHHHcCCCEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 630 M~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
|........++.+..++++.|...+.+...|+|+++++.|.|+.+++.++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK 299 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh
Confidence 3344455677888999999999889999999999999999999999987654
No 231
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=45.55 E-value=3.7e+02 Score=27.94 Aligned_cols=100 Identities=26% Similarity=0.404 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHccCCCCccc-
Q 005409 353 YLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGL- 431 (698)
Q Consensus 353 ~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~- 431 (698)
...+|+++|+++.....+. + ...+.++|+..-.... +|-++++.+-.-. +..+.
T Consensus 19 i~~~Givg~LigiYla~~~----------------~-~~~~~~ggl~ai~A~v-------wGa~tvRrvasYG-LGTGVP 73 (265)
T TIGR01148 19 IMALGIVGGLVGIYLGNFF----------------P-PAGPLIGGLGAICATV-------WGADAVRRVASYG-LGTGVP 73 (265)
T ss_pred HHHHHHHHHHHHHHHHHHc----------------c-hHHHHHHHHHHHHHHH-------HhhHHHHHHHhhc-CCCCCC
Confidence 5678999999988776531 1 2345666654433222 3556666554321 11122
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCCccc---eech--HHHHhhHHHHHHHHHHHHh
Q 005409 432 TADMLLQLVAAKIVATSLCRASGLVGG---YYAP--SLFIGAATGMAYGKFINFA 481 (698)
Q Consensus 432 s~~~l~~~~~~K~l~t~lt~gsG~~GG---~f~P--sl~iGA~~G~~~g~~~~~~ 481 (698)
|..++.+ -.-.++....+.. +|. .-.| ++.+.+.+|..+|.+.+..
T Consensus 74 SIGm~al--G~G~vaal~G~~i--~g~i~~~a~PI~alIia~IiG~vvG~la~~v 124 (265)
T TIGR01148 74 SIGMMSL--GMGILAAVAGLAL--GGNTPAIAAPIIALVVAAIIGGVVGVLANKV 124 (265)
T ss_pred cHHHHHH--hHHHHHHHHHHHc--cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222221 1112222222222 122 2223 6778888888888887754
No 232
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=43.36 E-value=2.7e+02 Score=33.11 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 005409 144 VVLVPACGGFIVSILN 159 (698)
Q Consensus 144 ~~l~p~~ggl~vgll~ 159 (698)
.+++|+++-++++.+.
T Consensus 414 ~~~~Pllt~li~~~l~ 429 (631)
T PRK09765 414 FYLYPVLGTLGAGSLM 429 (631)
T ss_pred EEeehHHHHHHHHHHH
Confidence 3456666666666554
No 233
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=42.08 E-value=3.9e+02 Score=27.82 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=17.0
Q ss_pred ceech--HHHHhhHHHHHHHHHHHHh
Q 005409 458 GYYAP--SLFIGAATGMAYGKFINFA 481 (698)
Q Consensus 458 G~f~P--sl~iGA~~G~~~g~~~~~~ 481 (698)
..-.| ++.+.+.+|..+|.+.+..
T Consensus 93 ~~~~PI~~liia~iiG~vvG~lan~v 118 (264)
T PRK01030 93 VLAGPIVALIIAAIIGAVVGKLANNV 118 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45566 5567888888888877654
No 234
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.48 E-value=80 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 005409 86 VGNSGVIISSCLVGLLTGIGVVLFNK 111 (698)
Q Consensus 86 ~~~~~~~~~a~lvGvl~G~~~~~f~~ 111 (698)
+....+++.++++|++.|++.++++.
T Consensus 56 P~~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888999999999999888763
No 235
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=26.62 E-value=1e+03 Score=29.05 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHhhc
Q 005409 498 SPQAYGLVGMAATLAGVCQ 516 (698)
Q Consensus 498 ~p~~~alvGaaA~la~v~~ 516 (698)
.+....+.|-+++++|++|
T Consensus 216 ~~~~~~~~af~GLlaG~fk 234 (764)
T TIGR02865 216 NLYQIGVFGFAGLLGGIFK 234 (764)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3444555667777777776
No 236
>PRK10490 sensor protein KdpD; Provisional
Probab=25.10 E-value=2.5e+02 Score=34.85 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 005409 316 VILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLS 368 (698)
Q Consensus 316 ~~~aav~a~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~ 368 (698)
.+++|+++.+.+.++| ..|.|.+.-++...+..+.+++++|++.|.++.-..
T Consensus 448 ai~aavls~l~~nfFF-~~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r 499 (895)
T PRK10490 448 SVVATVINVASFDLFF-VAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVR 499 (895)
T ss_pred HHHHHHHHHHHHHhee-CCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777666665543 346665543333334556667777777776655443
No 237
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.98 E-value=8.1e+02 Score=25.59 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005409 353 YLLLGVLCGLISLTLSRC 370 (698)
Q Consensus 353 ~illGil~Gl~g~lf~~~ 370 (698)
.+.+|+++|+++.....+
T Consensus 19 l~~~Givg~ligiYla~~ 36 (262)
T PF04211_consen 19 LMALGIVGGLIGIYLAYF 36 (262)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 567899999999887653
No 238
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=23.90 E-value=2e+02 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 005409 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIA 404 (698)
Q Consensus 351 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~ 404 (698)
++-+..|++.|.++....+..+-+--..||+.-..+.+..+..+..|=.+|.+.
T Consensus 53 i~GL~~GiFvG~la~ALaEvlnv~PIlarRi~l~~~i~~li~aialGK~~GsL~ 106 (110)
T PF13782_consen 53 IFGLFAGIFVGCLAAALAEVLNVFPILARRIGLRRGIPYLIMAIALGKVIGSLF 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHhh
Confidence 344556666677777776655444333344333333444444444444555443
No 239
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=23.08 E-value=1.6e+02 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=16.4
Q ss_pred CEEEEEccCCeEEEEEeHHHHHHHHH
Q 005409 656 SCAMIVDNDNILIGLLTLGDIEEFSK 681 (698)
Q Consensus 656 ~~lpVVd~~g~lvGiVt~~dl~~~l~ 681 (698)
..+-|||++|+.+|++++++.++.-+
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHH
Confidence 45666777777777777777766544
No 240
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.16 E-value=1.4e+02 Score=26.38 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=43.2
Q ss_pred hhhccccchhccccCceEEcCCCCHHHHHHH---HHHcCCCEEEEEcc-CCe----EEEEEeHHHHHHHHHHh
Q 005409 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTL---MLAEKQSCAMIVDN-DNI----LIGLLTLGDIEEFSKYA 683 (698)
Q Consensus 619 ~~~~~i~v~dvM~~~~~~v~~~~~l~eal~~---m~~~~~~~lpVVd~-~g~----lvGiVt~~dl~~~l~~~ 683 (698)
+.+.+-.|.+.+.++.+.+..+.+=.|..+. +.......+.++|. +|+ +.|.++.+++.+.+++.
T Consensus 38 ~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 38 DLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred HHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 3455556888888777766655543344444 44445666777887 564 56999999999887643
No 241
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.39 E-value=1.4e+02 Score=27.45 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005409 351 PLYLLLGVLCGLISLTL 367 (698)
Q Consensus 351 ~~~illGil~Gl~g~lf 367 (698)
...|++|+++|+++.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46889999999998875
Done!