BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005410
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 188 bits (477), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 180/546 (32%), Positives = 254/546 (46%), Gaps = 18/546 (3%)
Query: 71 VNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAI 130
+++S + S P F L L + N ++ ISTC L LN+ SN VG I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 131 PATLSQLKNLKSLELQENNFTGDIPASF-GEFTQXXXXXXXXXXXXGTISSSLGNISTLK 189
P LK+L+ L L EN FTG+IP G G + G+ S L+
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 190 ELRLAYNPFQPGQLP-SQLSNLTNLEYLWLSGCNLLGEIPESLTRLTK-LKNLDLSFNGL 247
L L+ N F G+LP L + L+ L LS GE+PESLT L+ L LDLS N
Sbjct: 322 SLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 248 TGSIPSSITE--MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE 305
+G I ++ + +++++ L N +G++P N + L+ S N L+GTIP+ L
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 306 L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYN 364
L +L L L+ N LEG +P+ + K L L L N L G +PS L + L + LS N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 365 QFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG 424
+ +GEIP+ + +L L L NSFSG IP LG CRSL + L NL +G++P +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 425 LPHMYLFELADNSFTGKISKSI--SGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGD 482
++A N GK I G G +++ LS +
Sbjct: 561 QSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI 542
+ G + + LD+S N LSG IP+ I S + LNL +N +SG IP E+
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 543 GNLPVLNYLDLSGNLFSGKIPXXXXX-XXXXXXXXXXXXXXGELPPLYAKEMY-RGSFLG 600
G+L LN LDLS N G+IP G +P + E + FL
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 601 NPGLCG 606
NPGLCG
Sbjct: 737 NPGLCG 742
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 175/415 (42%), Gaps = 85/415 (20%)
Query: 230 SLTRLTKLKNLDLSFNGLTGSIPSSIT---EMKSIEQIELFKNSLSGELPVKWV------ 280
SL + LK L++S N L P ++ ++ S+E ++L NS+SG V WV
Sbjct: 121 SLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 281 ------------------------------------------NMTTLLRFDASMNQLTGT 298
+ + L D S N+L+G
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 299 IPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSEL-GKYSPL 356
+ +L+ LN+ N+ G +P +S L L L NK G +P L G L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 357 TTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLS 415
T LDLS N F G +P LE L L N+FSG++P +L K R L+ + L N S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 416 GSVPEMFWGLPHMYL-FELADNSFTGKISKSI--SGAXXXXXXXXXXXXXXGSIPDEVGL 472
G +PE L L +L+ N+F+G I ++ + G IP +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD------------------------LSEN 508
S LV N +G IP SL LS+L +L L N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 509 ELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563
+L+G IP G+ + N+N ++L+NNRL+GEIP IG L L L LS N FSG IP
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 180/546 (32%), Positives = 254/546 (46%), Gaps = 18/546 (3%)
Query: 71 VNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAI 130
+++S + S P F L L + N ++ ISTC L LN+ SN VG I
Sbjct: 202 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 131 PATLSQLKNLKSLELQENNFTGDIPASF-GEFTQXXXXXXXXXXXXGTISSSLGNISTLK 189
P LK+L+ L L EN FTG+IP G G + G+ S L+
Sbjct: 261 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 190 ELRLAYNPFQPGQLP-SQLSNLTNLEYLWLSGCNLLGEIPESLTRLTK-LKNLDLSFNGL 247
L L+ N F G+LP L + L+ L LS GE+PESLT L+ L LDLS N
Sbjct: 319 SLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 248 TGSIPSSITE--MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE 305
+G I ++ + +++++ L N +G++P N + L+ S N L+GTIP+ L
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 306 L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYN 364
L +L L L+ N LEG +P+ + K L L L N L G +PS L + L + LS N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 365 QFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG 424
+ +GEIP+ + +L L L NSFSG IP LG CRSL + L NL +G++P +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 425 LPHMYLFELADNSFTGKISKSI--SGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGD 482
++A N GK I G G +++ LS +
Sbjct: 558 QSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI 542
+ G + + LD+S N LSG IP+ I S + LNL +N +SG IP E+
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 543 GNLPVLNYLDLSGNLFSGKIPXXXXX-XXXXXXXXXXXXXXGELPPLYAKEMY-RGSFLG 600
G+L LN LDLS N G+IP G +P + E + FL
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 601 NPGLCG 606
NPGLCG
Sbjct: 734 NPGLCG 739
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 175/415 (42%), Gaps = 85/415 (20%)
Query: 230 SLTRLTKLKNLDLSFNGLTGSIPSSIT---EMKSIEQIELFKNSLSGELPVKWV------ 280
SL + LK L++S N L P ++ ++ S+E ++L NS+SG V WV
Sbjct: 118 SLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 281 ------------------------------------------NMTTLLRFDASMNQLTGT 298
+ + L D S N+L+G
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 299 IPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSEL-GKYSPL 356
+ +L+ LN+ N+ G +P +S L L L NK G +P L G L
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 357 TTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLS 415
T LDLS N F G +P LE L L N+FSG++P +L K R L+ + L N S
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 416 GSVPEMFWGLPHMYL-FELADNSFTGKISKSI--SGAXXXXXXXXXXXXXXGSIPDEVGL 472
G +PE L L +L+ N+F+G I ++ + G IP +
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD------------------------LSEN 508
S LV N +G IP SL LS+L +L L N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 509 ELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563
+L+G IP G+ + N+N ++L+NNRL+GEIP IG L L L LS N FSG IP
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 2/220 (0%)
Query: 178 ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL 237
I SSL N+ L L + G +P ++ LT L YL+++ N+ G IP+ L+++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 238 KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLR-FDASMNQLT 296
LD S+N L+G++P SI+ + ++ I N +SG +P + + + L S N+LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 297 GTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPL 356
G IP L L ++L N LEG KN ++ L N L L ++G L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 357 TTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQ 396
LDL N+ G +P+GL + L L + +N+ G+IPQ
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 136/310 (43%), Gaps = 37/310 (11%)
Query: 23 QDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCHWRGVSCDPLTQ--RVTSVNLSQSQLSG 80
QD L ++K L +PT +L+SW T W GV CD TQ RV +++LS L
Sbjct: 6 QDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 81 PFPI--FFCRLPYLAQLSL--YNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQ 136
P+PI LPYL L + NN + +P I+ L L + + GAIP LSQ
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 137 LKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYN 196
+K L +L+ N +G +P S G I S G+ S L
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------- 175
Query: 197 PFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSIT 256
+ +S L G+IP + L L +DLS N L G
Sbjct: 176 ----------------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218
Query: 257 EMKSIEQIELFKNSLSGELPVKWVNMTTLLR-FDASMNQLTGTIPNELCELQ-LESLNLY 314
K+ ++I L KNSL+ +L V ++ L D N++ GT+P L +L+ L SLN+
Sbjct: 219 SDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 315 ENRLEGTLPE 324
N L G +P+
Sbjct: 277 FNNLCGEIPQ 286
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 3/203 (1%)
Query: 316 NRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLC 375
N L G +P +IA+ L L + + + G +P L + L TLD SYN SG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 376 EKGSLEDLVLIYNSFSGKIPQSLGKCRSL-RRVRLRHNLLSGSVPEMFWGLPHMYLFELA 434
+L + N SG IP S G L + + N L+G +P F L ++ +L+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 435 DNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSL 494
N G S + G+ +VGL NL N+ G +P L
Sbjct: 206 RNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 495 AKLSQLGNLDLSENELSGGIPEG 517
+L L +L++S N L G IP+G
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQG 287
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 25/200 (12%)
Query: 388 NSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS 447
N+ G IP ++ K L + + H +SG++P+ + + + + N+ +G + SIS
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 448 GAXXXXXXXXXXXXXXGSIPDEVGLLSNL-VEFSGDGNKFAGQIPGSLAKLSQLGNLDLS 506
G+IPD G S L + N+ G+IP + A L+ L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 507 ENELSG------GIPEGIESW-----------------KNINELNLANNRLSGEIPSEIG 543
N L G G + + KN+N L+L NNR+ G +P +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 544 NLPVLNYLDLSGNLFSGKIP 563
L L+ L++S N G+IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 479 FSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEI 538
+ G N G IP ++AKL+QL L ++ +SG IP+ + K + L+ + N LSG +
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 539 PSEIGNLPVLNYLDLSGNLFSGKIP 563
P I +LP L + GN SG IP
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIP 166
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 1/211 (0%)
Query: 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145
F L L +L + N I L NL L +G N LV S L +L+ L L
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Query: 146 QENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLPS 205
++ N T + S + LK L +++ P+ P+
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 206 QLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIE 265
L L NL L ++ CNL ++ L L+ L+LS+N ++ S + E+ +++I+
Sbjct: 220 CLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 266 LFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296
L L+ P + + L + S NQLT
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 50/327 (15%)
Query: 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTL--LRFDAS 291
T+++ LDL+ L G +PS I M S++++ L NS + + +L L +
Sbjct: 276 FTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 292 MNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELG 351
M +L +L L EN + L S + + L+L N LR
Sbjct: 335 MRKL---------DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN--LRH------- 376
Query: 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQS-LGKCRSLRRVRLR 410
L L+LSYN+ G + E LE L + + K P S LR + L
Sbjct: 377 ----LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 411 HNLLSGSVPEMFWGLPHMYLFELADNSFT-GKISKSISGAXXXXXXXXXXXXXXGSIPDE 469
H LL S + GL + L NSF G ISK+ GS+ E
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT------------NLLQMVGSL--E 478
Query: 470 VGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529
+ +LS+ S D F G L + +LDLS N L+G + + K + LN+
Sbjct: 479 ILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 530 ANNRLSGEIPSEIGNLPVLNYLDLSGN 556
A+N + P + L + ++LS N
Sbjct: 530 ASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQ--LSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKN 239
L + L+ L L N FQ G + L + +LE L LS CNLL ++ L + +
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 240 LDLSFNGLTGSIPSSITEMKSI 261
LDLS N LTG +++ +K +
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGL 525
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 156/418 (37%), Gaps = 52/418 (12%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTR-LTKLKNL 240
+ N+ L+ L L N LP NL+ L N + I T L + NL
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQN-NAIHYISRKDTNSLEQATNL 181
Query: 241 DLSFNG--LTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRF------DASM 292
L+FNG + G P + + I Q F SL+ + K + +TL D
Sbjct: 182 SLNFNGNDIKGIEPGAF--ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDD 239
Query: 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGK 352
LT LC++ +ES+NL ++R + + EL L L GLPS +
Sbjct: 240 QYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHL-NGLPSGIEG 298
Query: 353 YSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI-PQSLGKCRSLRRVRLRH 411
+ L L L+ N F SL DL + N + + L K +L+++ L H
Sbjct: 299 MNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH 358
Query: 412 NLLSGS--------------------------VPEMFWGLPHMYLFELADNSFTGKISKS 445
+ + S + F P + L ++A K S
Sbjct: 359 SDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Query: 446 -ISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK---LSQLG 501
S + L +L + GN F GS++K L +G
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD---GSISKTNLLQMVG 475
Query: 502 NLD---LSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
+L+ LS L + +N+N L+L++N L+G+ + +L L YL+++ N
Sbjct: 476 SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASN 532
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 130/301 (43%), Gaps = 47/301 (15%)
Query: 261 IEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQ------LESLNLY 314
+++++L LS ELP V ++TL + S N+ LC++ L L++
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIK 333
Query: 315 EN--RLE-GTLPESIARSKNLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSYNQFSGE 369
N RLE GT + +NL EL L ++ + +L S L +L+LSYN+
Sbjct: 334 GNTKRLELGT--GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQS-LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHM 428
E E LE L L + K QS L+ + L H+LL S ++F GLP +
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451
Query: 429 YLFELADNSF-TGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFA 487
L N F G I K+ S G + E+ +LS S D + F
Sbjct: 452 QHLNLQGNHFPKGNIQKTNS------------LQTLGRL--EILVLSFCDLSSIDQHAFT 497
Query: 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPV 547
L + ++DLS N L+ E + K I LNLA+N +S +PS LP+
Sbjct: 498 S--------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL---LPI 545
Query: 548 L 548
L
Sbjct: 546 L 546
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 188 LKELRLAYNPFQPG--QLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245
L+ L L N F G Q + L L LE L LS C+L + T L + ++DLS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELP 276
LT S +++ +K I + L N +S LP
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILP 540
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 101/262 (38%), Gaps = 61/262 (23%)
Query: 224 LGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWV-NM 282
L E+P L L+ LK L LS N S + S+ + + N+ EL + N+
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 283 TTLLRFDASMNQLTGTIPNELCELQL------ESLNLYEN--------------RLE--- 319
L D S + + + + C LQL +SLNL N +LE
Sbjct: 350 ENLRELDLSHDDIETS---DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 320 ---GTLPESIARS--KNLSELKLFN----------NKLRGGLPSELGKYSPLTTLDLSYN 364
L A+S +NL LK+ N +L GLP+ L L+L N
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-------LQHLNLQGN 459
Query: 365 QFSGEIPEGLCEK-------GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417
F P+G +K G LE LVL + S + + + V L HN L+ S
Sbjct: 460 HF----PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Query: 418 VPEMFWGLPHMYLFELADNSFT 439
E L +YL LA N +
Sbjct: 516 SIEALSHLKGIYL-NLASNHIS 536
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 37/254 (14%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLD---LSYNQFS 367
L+L N++ KNL L L NNK+ P G ++PL L+ LS NQ
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKNQLK 113
Query: 368 GEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPH 427
E+PE K+P ++L+ +R+ N ++ +F GL
Sbjct: 114 -ELPE--------------------KMP------KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 428 MYLFELADNSF-TGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKF 486
M + EL N + I +IP GL +L E DGNK
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKI 204
Query: 487 AGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546
SL L+ L L LS N +S + + ++ EL+L NN+L ++P + +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263
Query: 547 VLNYLDLSGNLFSG 560
+ + L N S
Sbjct: 264 YIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 37/254 (14%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLD---LSYNQFS 367
L+L N++ KNL L L NNK+ P G ++PL L+ LS NQ
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLERLYLSKNQLK 113
Query: 368 GEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPH 427
E+PE K+P ++L+ +R+ N ++ +F GL
Sbjct: 114 -ELPE--------------------KMP------KTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 428 MYLFELADNSF-TGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKF 486
M + EL N + I +IP GL +L E DGNK
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKI 204
Query: 487 AGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546
SL L+ L L LS N +S + + ++ EL+L NN+L ++P + +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263
Query: 547 VLNYLDLSGNLFSG 560
+ + L N S
Sbjct: 264 YIQVVYLHNNNISA 277
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 94 QLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGD 153
++ L+ N I+ CRNLT L L SN+L A + L L+ L+L +N
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 154 I-PASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLPSQ-LSNLT 211
+ PA+F + ++ L+ L L N Q LP +L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLG 153
Query: 212 NLEYLWLSGCNLLGEIPESLTR-LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS 270
NL +L+L G N + +PE R L L L L N + P + ++ + + LF N+
Sbjct: 154 NLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 271 LSG 273
LS
Sbjct: 213 LSA 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 94 QLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGD 153
++ L+ N I+ CRNLT L L SN+L A + L L+ L+L +N
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 154 I-PASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLPSQ-LSNLT 211
+ PA+F + ++ L+ L L N Q LP +L
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLG 152
Query: 212 NLEYLWLSGCNLLGEIPESLTR-LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS 270
NL +L+L G N + +PE R L L L L N + P + ++ + + LF N+
Sbjct: 153 NLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 271 LSG 273
LS
Sbjct: 212 LSA 214
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 114 RNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXX 173
R+L L L N + + L NL +LEL +N T +F ++
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 174 XXGTISSSLGNISTLKEL------RLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI 227
S + I +L+ L RL+Y G L+NL YL L+ CNL EI
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAF----EGLSNLRYLNLAMCNL-REI 200
Query: 228 PESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLR 287
P +LT L KL LDLS N L+ P S + ++++ + ++ + + N+ +L+
Sbjct: 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 288 FDASMNQLTGTIPNELCE--LQLESLNLYEN 316
+ + N LT +P++L LE ++L+ N
Sbjct: 260 INLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 25/225 (11%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370
LNL+EN+++ S ++L L+L N +R + L TL+L N+ + I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127
Query: 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430
P G +Y S L+ + LR+N + F +P +
Sbjct: 128 PNG----------AFVYLS-------------KLKELWLRNNPIESIPSYAFNRIPSLRR 164
Query: 431 FELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQI 490
+L + IS+ IP+ L+ L E GN +
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-LDELDLSGNHLSAIR 223
Query: 491 PGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535
PGS L L L + ++++ ++ +++ E+NLA+N L+
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 222 NLLGEIP-ESLTRLTKLKNLDLSFNGLTGSIPSSI-TEMKSIEQIELFKNSLSGELPV-- 277
N L +P ++ RLTKL+ L L+ N L ++P+ I E+K++E + + N L LP+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGV 104
Query: 278 --KWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESI-ARSKNLS 333
+ VN+ L R D NQL P L +L L+L N L+ +LP+ + + +L
Sbjct: 105 FDQLVNLAEL-RLD--RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 334 ELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386
EL+L+NN+L+ K + L TL L NQ +PEG + SLE L ++
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD--SLEKLKML 210
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 36/204 (17%)
Query: 240 LDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRF----DASMNQL 295
+D S LT +IPS+I ++++L N LS LP K + T LR D + L
Sbjct: 21 VDCSSKKLT-AIPSNIPA--DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 296 TGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP 355
I EL LE+L + +N+L+ + NL+EL+L N+L+ P +
Sbjct: 77 PAGIFKEL--KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 356 LTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLS 415
LT L L YN+ +P+G+ +K + SL+ +RL +N L
Sbjct: 135 LTYLSLGYNELQS-LPKGVFDKLT-----------------------SLKELRLYNNQLK 170
Query: 416 GSVPE-MFWGLPHMYLFELADNSF 438
VPE F L + +L +N
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADN---SFTGKISKSISGAXXXXXXXXXXXX 461
+++ L+ N LS + F L + L L DN + I K +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 462 XXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ES 520
+ D+ L NL E D N+ P L++L L L NEL +P+G+ +
Sbjct: 100 LPIGVFDQ---LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155
Query: 521 WKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
++ EL L NN+L L L L L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 17/162 (10%)
Query: 204 PSQLSNLTNLEYLWLSGCNLLGE-IPESLTRLTKLKNLDLSFNGLT--GSIPSSITEMKS 260
PS++S +L++ NLL + + E+ LT+L+ L L N L I T+MKS
Sbjct: 320 PSKISPFLHLDF----SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375
Query: 261 IEQIELFKNSLSGELP---VKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENR 317
++Q+++ +NS+S + W +LL + S N LT TI L +++ L+L+ N+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTK--SLLSLNMSSNILTDTIFRCLPP-RIKVLDLHSNK 432
Query: 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTL 359
++ ++P+ + + + L EL + +N+L+ +P G + LT+L
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLK-SVPD--GIFDRLTSL 470
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 37 DPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLS 96
D + + S+D+ + D C W T+ + S+N+S + L+ IF C P + L
Sbjct: 380 DISQNSVSYDEKKGD--CSW--------TKSLLSLNMSSNILTDT--IFRCLPPRIKVLD 427
Query: 97 LYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIP 155
L++N I S+P + L +LN+ SN L +L +L+ + L N + P
Sbjct: 428 LHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 282 MTTLLRFDASMNQLTGTIPNELCE--LQLESLNLYENRLEGTLPESI-ARSKNLSELKLF 338
+T L + NQL ++PN + + L+ L L EN+L+ +LP+ + + NL+ L L
Sbjct: 84 LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141
Query: 339 NNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNSFSGKIPQS 397
+N+L+ K + LT LDLSYNQ +PEG+ +K L+DL L N
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Query: 398 LGKCRSLRRVRLRHNLLSGSVP 419
+ SL+ + L N + P
Sbjct: 201 FDRLTSLQYIWLHDNPWDCTCP 222
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 205 SQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLDLSFNGLTGSIPSSI-TEMKSIE 262
S L LTNL YL L+G N L +P + +LT LK L L N L S+P + ++ ++
Sbjct: 79 SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 263 QIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE--LQLESLNLYENRLEG 320
+ L N L + +T L D S NQL ++P + + QL+ L LY+N+L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 321 TLPESIARSKNLSELKLFNN 340
R +L + L +N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLAN 531
L+NL GN+ G KL+ L L L EN+L +P+G+ + N+ LNLA+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAH 142
Query: 532 NRLSGEIPSEIGNLPVLNYLDLSGN 556
N+L L L LDLS N
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 46/205 (22%)
Query: 89 LPYLAQLSLYNNYINSSLPLDISTCRNLTDLN---LGSNLLVGAIPATLSQLKNLKSLEL 145
LP + L+L N ++ DIS + LT+L L N L +L NLK L L
Sbjct: 62 LPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 146 QENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQ--PGQL 203
EN F + T L L LA+N Q P +
Sbjct: 117 VENQLQSLPDGVFDKLT------------------------NLTYLNLAHNQLQSLPKGV 152
Query: 204 PSQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLDLSFNGLTGSIPSSITE-MKSI 261
+L+NLT L+ + N L +PE + +LT+LK+L L N L S+P + + + S+
Sbjct: 153 FDKLTNLTELDLSY----NQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSL 207
Query: 262 EQIELFKNSLSGELP-----VKWVN 281
+ I L N P +W+N
Sbjct: 208 QYIWLHDNPWDCTCPGIRYLSEWIN 232
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 465 SIPDEV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWK 522
S+PD V L+NL + N+ G KL+ L LDLS N+L +PEG+ +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 523 NINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563
+ +L L N+L L L Y+ L N + P
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 29/136 (21%)
Query: 85 FFCRLPYLAQLSLYNNYINSSLPLDI-STCRNLTDLNLGSNLLVGAIPATLSQLKNLKSL 143
F +L L +L L N + SLP + NLT LNL N L +L NL L
Sbjct: 104 VFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 144 ELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQL 203
+L N F + TQ LK+LRL N Q +
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQ------------------------LKDLRLYQN--QLKSV 196
Query: 204 PSQL-SNLTNLEYLWL 218
P + LT+L+Y+WL
Sbjct: 197 PDGVFDRLTSLQYIWL 212
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLAN 531
L+NL E N+ G KL+ L L+L+ N+L +P+G+ + N+ EL+L+
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSY 166
Query: 532 NRL 534
N+L
Sbjct: 167 NQL 169
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 6/182 (3%)
Query: 94 QLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGD 153
++ L+ N I+ +CRNLT L L SN L G A + L L+ L+L +N
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 154 I-PASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLP-SQLSNLT 211
+ P +F ++ L+ L L N Q LP + +L
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ--ALPDNTFRDLG 152
Query: 212 NLEYLWLSGCNLLGEIPESLTR-LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS 270
NL +L+L G N + +PE R L L L L N + P + ++ + + LF N+
Sbjct: 153 NLTHLFLHG-NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN 211
Query: 271 LS 272
LS
Sbjct: 212 LS 213
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 49/282 (17%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 59 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L N + P
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 396 QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXX 454
L +L R+ + N +S SV L + +A N+ I+
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP---------- 212
Query: 455 XXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGI 514
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 213 ---------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 255
Query: 515 PEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 116/285 (40%), Gaps = 27/285 (9%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376
++ P + NL+ L+L +N + S L + L L S NQ + P L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN 436
+LE L + N S L K +L + +N +S P G+ L L +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGI----LTNLDEL 222
Query: 437 SFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGL--LSNLVEFSGDGNKFAGQIPGSL 494
S G K I G I + L L+ L E N+ + P L
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--L 279
Query: 495 AKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIP 539
A L+ L NL+L+EN+L P I + KN+ L L N +S P
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 49/282 (17%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 59 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L N + P
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP 168
Query: 396 QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXX 454
L +L R+ + N +S SV L + +A N+ I+
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP---------- 212
Query: 455 XXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGI 514
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 213 ---------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 255
Query: 515 PEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 116/285 (40%), Gaps = 27/285 (9%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376
++ P + NL+ L+L +N + S L + L L S NQ + P L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN 436
+LE L + N S L K +L + +N +S P G+ L L +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGI----LTNLDEL 222
Query: 437 SFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGL--LSNLVEFSGDGNKFAGQIPGSL 494
S G K I G I + L L+ L E N+ + P L
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--L 279
Query: 495 AKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIP 539
A L+ L NL+L+EN+L P I + KN+ L L N +S P
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 49/282 (17%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 59 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L N + P
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP 168
Query: 396 QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXX 454
L +L R+ + N +S SV L + +A N+ I+
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP---------- 212
Query: 455 XXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGI 514
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 213 ---------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 255
Query: 515 PEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 256 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 117/285 (41%), Gaps = 27/285 (9%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376
++ P + NL+ L+L +N + S L + L L+ S NQ + P L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN 436
+LE L + N S L K +L + +N +S P G+ L L +
Sbjct: 172 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGI----LTNLDEL 222
Query: 437 SFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGL--LSNLVEFSGDGNKFAGQIPGSL 494
S G K I G I + L L+ L E N+ + P L
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--L 279
Query: 495 AKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIP 539
A L+ L NL+L+EN+L P I + KN+ L L N +S P
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+S+L+ L++A N FQ LP + L NL +L LS C L P + L+ L+ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 245 NGLTGSIPSSITE-MKSIEQIELFKNSLSGELP-----VKWVN 281
N L S+P I + + S+++I L N P +W+N
Sbjct: 504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 14/229 (6%)
Query: 178 ISSSLGNISTLKEL---RLAYNPFQPGQLPSQLSNLTNLEYLWLS--GCNLLGEIPESLT 232
++ G TLK RL + + G S++ +L +LE+L LS G + G +S
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 233 RLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS--GELPVKWVNMTTLLRFDA 290
T LK LDLSFNG+ ++ S+ ++ +E ++ ++L E V ++++ L+ D
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDI 428
Query: 291 SMNQLTGTIPNELCEL-QLESLNLYENRL-EGTLPESIARSKNLSELKLFNNKLRGGLPS 348
S L LE L + N E LP+ +NL+ L L +L P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 349 ELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNSFSGKIPQ 396
S L L+++ NQ +P+G+ ++ SL+ + L N + P+
Sbjct: 489 AFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 473 LSNLVEFSGDGNKFAGQ-IPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531
LS+L GN F +P +L L LDLS+ +L P S ++ LN+A+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 532 NRLSGEIPSEI 542
N+L +P I
Sbjct: 504 NQLKS-VPDGI 513
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQ--LSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKN 239
L + L+ L L N FQ G + L + +LE L LS C LL ++ L K+ +
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 240 LDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299
+DLS N LT S++ +K I + L NS++ P ++ + S N L T
Sbjct: 502 VDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTC 560
Query: 300 PNELCELQLESLNLYE---NRLEGTLPESIARSKNLSELKLFNNKLRGG 345
N + L Y+ ++LEG+ + A +L +KL + KL G
Sbjct: 561 SN------IHFLTWYKENLHKLEGSEETTCANPPSLRGVKLSDVKLSCG 603
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 141/348 (40%), Gaps = 63/348 (18%)
Query: 110 ISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXXXXXX 169
+ T ++ D ++ S +L G ++ +SL LQE+ F+ +F FTQ
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 170 XXXXXXGTISSSLGNISTLKELRLAYNPF-QPGQLPSQLSNLTNLEYLWLSG-CNLLGEI 227
G + S + ++ LK+L L+ N F Q Q+ + +N +L +L++ G L
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISA--ANFPSLTHLYIRGNVKKLHLG 339
Query: 228 PESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLR 287
L +L L+ LDLS N + S S+ + N++ L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSL----------------------QLKNLSHLQT 377
Query: 288 FDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLF-------- 338
+ S N+ G E QLE L+L RL P+S +NL L++
Sbjct: 378 LNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS--PFQNLHFLQVLNLTYCFLD 435
Query: 339 --NNKLRGGLPSELGKYSPLTTLDLSYNQFS-GEIPEG--LCEKGSLEDLVLIYN---SF 390
N L GLP L L+L N F G I + L GSLE L+L S
Sbjct: 436 TSNQHLLAGLPV-------LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSI 488
Query: 391 SGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSF 438
+ SLGK + V L HN L+ + L +YL LA NS
Sbjct: 489 DQQAFHSLGK---MSHVDLSHNSLTCDSIDSLSHLKGIYL-NLAANSI 532
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 27/230 (11%)
Query: 331 NLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYN 388
NL L L +N + +L S L TL+LS+N+ G + E LE L L +
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 389 SFSGKIPQS-LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFT-GKISKSI 446
PQS L+ + L + L S + GLP + L N F G I+K+
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT- 466
Query: 447 SGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLS 506
GS+ EV +LS+ S D F SL K+S +DLS
Sbjct: 467 -----------NLLQTVGSL--EVLILSSCGLLSIDQQAFH-----SLGKMSH---VDLS 505
Query: 507 ENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
N L+ + + K I LNLA N ++ P + L + ++LS N
Sbjct: 506 HNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 471 GLLSNLVEFSGDG-----NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525
+L L E S + ++F+ + +QL LDL+ L G +P G++ +
Sbjct: 243 AMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLK 301
Query: 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557
+L L+ N N P L +L + GN+
Sbjct: 302 KLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+S+L+ L++A N FQ LP + L NL +L LS C L P + L+ L+ L++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 245 NGL 247
N
Sbjct: 504 NNF 506
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 19/179 (10%)
Query: 196 NPFQPGQLPSQLSNLTNLEYLWLS--GCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPS 253
N F LPS LE+L LS G + G +S T LK LDLSFNG+ ++ S
Sbjct: 339 NAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390
Query: 254 SITEMKSIEQIELFKNSLS--GELPVKWVNMTTLLRFDASMNQLTGT---IPNELCELQL 308
+ ++ +E ++ ++L E V ++++ L+ D S I N L L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-- 447
Query: 309 ESLNLYENRL-EGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366
E L + N E LP+ +NL+ L L +L P+ S L L++S+N F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 210 LTNLEYLWLSGCNLLGE--IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELF 267
L++LE L ++G N E +P+ T L L LDLS L P++ + S++ + +
Sbjct: 444 LSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 268 KNSLSG--ELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENRLEGT 321
N+ P K +N +L D S+N + + EL L LNL +N T
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVL--DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+S+L+ L++A N FQ LP + L NL +L LS C L P + L+ L+ L++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 245 NGL 247
N
Sbjct: 528 NNF 530
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 178 ISSSLGNISTLKEL---RLAYNPFQPGQLPSQLSNLTNLEYLWLS--GCNLLGEIPESLT 232
++ G TLK RL + + G S++ +L +LE+L LS G + G +S
Sbjct: 336 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDF 394
Query: 233 RLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS--GELPVKWVNMTTLLRFDA 290
LK LDLSFNG+ ++ S+ ++ +E ++ ++L E V ++++ L+ D
Sbjct: 395 GTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDI 452
Query: 291 SMNQLTGT---IPNELCELQLESLNLYENRL-EGTLPESIARSKNLSELKLFNNKLRGGL 346
S I N L L E L + N E LP+ +NL+ L L +L
Sbjct: 453 SHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 347 PSELGKYSPLTTLDLSYNQF 366
P+ S L L++S+N F
Sbjct: 511 PTAFNSLSSLQVLNMSHNNF 530
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 210 LTNLEYLWLSGCNLLGE--IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELF 267
L++LE L ++G N E +P+ T L L LDLS L P++ + S++ + +
Sbjct: 468 LSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 268 KNSLSG--ELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENRLEGT 321
N+ P K +N +L D S+N + + EL L LNL +N T
Sbjct: 527 HNNFFSLDTFPYKCLNSLQVL--DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 41 SLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNN 100
SL S + D C W + + +NLS + L+G +F C P + L L+NN
Sbjct: 411 SLNSLNSHAYDRTCAW--------AESILVLNLSSNMLTGS--VFRCLPPKVKVLDLHNN 460
Query: 101 YINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIP 155
I S+P D++ + L +LN+ SN L +L +L+ + L +N + P
Sbjct: 461 RI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 54/284 (19%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 64 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L SF ++
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL-----SFGNQVT 168
Query: 396 --QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXX 452
+ L +L R+ + N +S SV L + +A N+ I+
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP-------- 216
Query: 453 XXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 217 -----------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257
Query: 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLR----------------GGLPSELGKYSPLTTL- 359
++ P + NL+ L+L +N + G ++L + LTTL
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180
Query: 360 --DLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417
D+S N+ S L + +LE L+ N S P LG +L + L N L
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 235
Query: 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLV 477
L ++ +LA+N + +SG L+ L
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNL--APLSG------------------------LTKLT 268
Query: 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537
E N+ + P LA L+ L NL+L+EN+L P I + KN+ L L N +S
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 538 IP 539
P
Sbjct: 325 SP 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 54/284 (19%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 63 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 116
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L SF ++
Sbjct: 117 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL-----SFGNQVT 167
Query: 396 --QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXX 452
+ L +L R+ + N +S SV L + +A N+ I+
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP-------- 215
Query: 453 XXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 216 -----------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 256
Query: 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 257 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 296
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLR----------------GGLPSELGKYSPLTTL- 359
++ P + NL+ L+L +N + G ++L + LTTL
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 179
Query: 360 --DLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417
D+S N+ S L + +LE L+ N S P LG +L + L N L
Sbjct: 180 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 234
Query: 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLV 477
L ++ +LA+N + +SG L+ L
Sbjct: 235 -IGTLASLTNLTDLDLANNQISNL--APLSG------------------------LTKLT 267
Query: 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537
E N+ + P LA L+ L NL+L+EN+L P I + KN+ L L N +S
Sbjct: 268 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 538 IP 539
P
Sbjct: 324 SP 325
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 7/140 (5%)
Query: 205 SQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLDLSFNGLTGSIPSSI-TEMKSIE 262
S L LTNL YL L+G N L +P + +LT LK L L N L S+P + ++ ++
Sbjct: 79 SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLT 136
Query: 263 QIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE--LQLESLNLYENRLEG 320
+ L+ N L + +T L R D NQL ++P + + QL+ L+L +N+L+
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 321 TLPESIARSKNLSELKLFNN 340
R +L+ + L NN
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 308 LESLNLYENRLEGTLPESI-ARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366
L+ L L EN+L+ +LP+ + + NL+ L L++N+L+ K + LT LDL NQ
Sbjct: 111 LKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 367 SGEIPEGLCEK 377
+PEG+ +K
Sbjct: 170 QS-LPEGVFDK 179
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI 518
L+NL D N+ G KL+QL L L++N+L +P+G+
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGV 200
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLAN 531
L+NL GN+ G KL+ L L L EN+L +P+G+ + N+ L L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 532 NRLSGEIPSEIGNLPVLNYLDLSGN 556
N+L L L LDL N
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNN 167
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 465 SIPDEV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWK 522
S+PD V L+NL N+ G KL+ L LDL N+L +PEG+ +
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLT 181
Query: 523 NINELNLANNRL 534
+ +L+L +N+L
Sbjct: 182 QLKQLSLNDNQL 193
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 36/168 (21%)
Query: 109 DISTCRNLTDLN---LGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXX 165
DIS + LT+L L N L +L NLK L L EN F + T
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-- 134
Query: 166 XXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQ--PGQLPSQLSNLTNLEYLWLSGCNL 223
L L L +N Q P + +L+NLT L+ N
Sbjct: 135 ----------------------LTYLYLYHNQLQSLPKGVFDKLTNLTRLDL----DNNQ 168
Query: 224 LGEIPESL-TRLTKLKNLDLSFNGLTGSIPSSITE-MKSIEQIELFKN 269
L +PE + +LT+LK L L+ N L S+P + + + S+ I L N
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNN 215
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNS 389
N+ L L NKL S L + + LT L L+ NQ +P G+ +K +L++LVL+ N
Sbjct: 64 NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQ 120
Query: 390 FSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSF 438
K +L + L HN L +F L ++ +L +N
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 54/284 (19%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 59 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L +F ++
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL-----NFGNQVT 163
Query: 396 --QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXX 452
+ L +L R+ + N +S SV L + +A N+ I+
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP-------- 211
Query: 453 XXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 212 -----------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 252
Query: 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 253 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLR----------------GGLPSELGKYSPLTTL- 359
++ P + NL+ L+L +N + G ++L + LTTL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 360 --DLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417
D+S N+ S L + +LE L+ N S P LG +L + L N L
Sbjct: 176 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 230
Query: 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLV 477
L ++ +LA+N + +SG L+ L
Sbjct: 231 -IGTLASLTNLTDLDLANNQISNL--APLSG------------------------LTKLT 263
Query: 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537
E N+ + P LA L+ L NL+L+EN+L P I + KN+ L L N +S
Sbjct: 264 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 538 IP 539
P
Sbjct: 320 SP 321
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220
+G++ TLKEL +A+N Q +LP SNLTNLE+L LS
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LS+L GN G+ + LS L L E L+ I K + ELN+A+N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P NL L +LDLS N
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 54/284 (19%)
Query: 277 VKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSEL 335
V+++N T + F S NQLT P L L +L + + N++ P +A NL+ L
Sbjct: 59 VEYLNNLTQINF--SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 336 KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP 395
LFNN++ P L + L L+LS N S L SL+ L +F ++
Sbjct: 113 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQL-----NFGNQVT 163
Query: 396 --QSLGKCRSLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGAXXX 452
+ L +L R+ + N +S SV L + +A N+ I+
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITP-------- 211
Query: 453 XXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512
+G+L+NL E S +GN+ G+LA L+ L +LDL+ N++S
Sbjct: 212 -----------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 252
Query: 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556
P + + EL L N++S P + L L L+L+ N
Sbjct: 253 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)
Query: 258 MKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYEN 316
+ ++ QI N L+ P+K N+T L+ + NQ+ P L L L L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 317 RLEGTLPESIARSKNLSELKLFNNKLR----------------GGLPSELGKYSPLTTL- 359
++ P + NL+ L+L +N + G ++L + LTTL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 360 --DLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417
D+S N+ S L + +LE L+ N S P LG +L + L N L
Sbjct: 176 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 230
Query: 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLV 477
L ++ +LA+N + +SG L+ L
Sbjct: 231 -IGTLASLTNLTDLDLANNQISNL--APLSG------------------------LTKLT 263
Query: 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537
E N+ + P LA L+ L NL+L+EN+L P I + KN+ L L N +S
Sbjct: 264 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 538 IP 539
P
Sbjct: 320 SP 321
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFS 367
L+++ N+ LP+ I R +++EL L N+ +P EL Y LT +DLS N+ S
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPR--DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS 67
Query: 368 GEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPE 420
+ L L+L YN P++ +SLR + L N +S VPE
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 471 GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLA 530
G+ ++ E DGN+F +P L+ L +DLS N +S + + + L L+
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 531 NNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559
NRL P L L L L GN S
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 188 LKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247
+ EL L N F +P +LSN +L + LS + +S + +T+L L LS+N L
Sbjct: 33 VTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 248 TGSIPSSITEMKSIEQIELFKNSLS 272
P + +KS+ + L N +S
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+S+L+ L++A N FQ LP + L NL +L LS C L P + L+ L+ L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 245 NGL 247
N
Sbjct: 209 NNF 211
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query: 176 GTISSSLGNISTLKELRLAYNPFQ--PGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTR 233
G S G S+ L L N Q P + +L+ LT L L +G + G +S
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS-LSSNGLSFKGCCSQSDFG 76
Query: 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS--GELPVKWVNMTTLLRFDAS 291
T LK LDLSFNG+ ++ S+ ++ +E ++ ++L E V ++++ L+ D S
Sbjct: 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDIS 134
Query: 292 MNQLTGT---IPNELCELQLESLNLYENRL-EGTLPESIARSKNLSELKLFNNKLRGGLP 347
I N L L E L + N E LP+ +NL+ L L +L P
Sbjct: 135 HTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 348 SELGKYSPLTTLDLSYNQF 366
+ S L L++S+N F
Sbjct: 193 TAFNSLSSLQVLNMSHNNF 211
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNS 389
N++ L L +N+LR + +YS LT+LD+ +N S PE LC+K L+ L L +N
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNE 89
Query: 390 FSGKIPQSLGKCRSLRRVRLRHN 412
S ++ C +L + L N
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSN 112
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENR 317
+I + L N L + + L D N ++ P ELC+ L+ LNL N
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 89
Query: 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
L ++ A NL+EL L +N ++ + K L TLDLS+N S
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLL 126
++TS+++ + +S P +LP L L+L +N ++ + C NLT+L+L SN +
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 127 VGAIPATLSQLKNLKSLELQEN 148
+ KNL +L+L N
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHN 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNS 389
N++ L L +N+LR + +YS LT+LD+ +N S PE LC+K L+ L L +N
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNE 94
Query: 390 FSGKIPQSLGKCRSLRRVRLRHN 412
S ++ C +L + L N
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSN 117
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENR 317
+I + L N L + + L D N ++ P ELC+ L+ LNL N
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 94
Query: 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
L ++ A NL+EL L +N ++ + K L TLDLS+N S
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 22/257 (8%)
Query: 177 TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPES-LTRLT 235
T+S + + S LK ++ P LP+ ++ L NL + N L +P + TR +
Sbjct: 13 TVSHEVADCSHLKLTQV------PDDLPTNITVL-NLTH------NQLRRLPAANFTRYS 59
Query: 236 KLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQL 295
+L +LD+ FN ++ P ++ ++ + L N LS + T L N +
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 296 TGTIPNELCELQ-LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKY- 353
N + + L +L+L N L T + + +NL EL L NNK++ EL +
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 179
Query: 354 -SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVL----IYNSFSGKIPQSLGKCRSLRRVR 408
S L L+LS NQ P G L L L + S + K+ L S+R +
Sbjct: 180 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-SIRNLS 238
Query: 409 LRHNLLSGSVPEMFWGL 425
L ++ LS + F GL
Sbjct: 239 LSNSQLSTTSNTTFLGL 255
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLL 126
++TS+++ + +S P +LP L L+L +N ++ + C NLT+L+L SN +
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 127 VGAIPATLSQLKNLKSLELQEN 148
+ KNL +L+L N
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHN 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNS 389
N++ L L +N+LR + +YS LT+LD+ +N S PE LC+K L+ L L +N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNE 84
Query: 390 FSGKIPQSLGKCRSLRRVRLRHN 412
S ++ C +L + L N
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSN 107
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENR 317
+I + L N L + + L D N ++ P ELC+ L+ LNL N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 84
Query: 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
L ++ A NL+EL L +N ++ + K L TLDLS+N S
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLL 126
++TS+++ + +S P +LP L L+L +N ++ + C NLT+L+L SN +
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 127 VGAIPATLSQLKNLKSLELQEN 148
+ KNL +L+L N
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHN 131
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 26/229 (11%)
Query: 202 QLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSI 261
Q P Q L++L++ + L E+P++ + L+ L L+ N L ++P+SI + +
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGL-XELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRL 152
Query: 262 EQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGT 321
++ + ELP L DAS + G + NL RLE T
Sbjct: 153 RELSIRACPELTELP------EPLASTDAS-GEHQGLV------------NLQSLRLEWT 193
Query: 322 ----LPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK 377
LP SIA +NL LK+ N+ L P+ + L LDL P +
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 378 GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLP 426
L+ L+L S +P + + L ++ LR + +P + LP
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 40/141 (28%)
Query: 127 VGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNIS 186
+ ++PA+++ L+NLKSL+++ + + PA + ++
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPA-------------------------IHHLP 229
Query: 187 TLKELRLA-------YNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKN 239
L+EL L Y P G+ P L+ L L C+ L +P + RLT+L+
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAP--------LKRLILKDCSNLLTLPLDIHRLTQLEK 281
Query: 240 LDLSFNGLTGSIPSSITEMKS 260
LDL +PS I ++ +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPA 302
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 68/170 (40%), Gaps = 34/170 (20%)
Query: 103 NSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPAS-FGEF 161
++S+P I T N L L N + P L NLK L L N G +P F
Sbjct: 31 HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 162 TQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLPSQL-SNLTNLEYLWLSG 220
TQ L L L N Q LPS + L +L+ L++
Sbjct: 88 TQ------------------------LTVLDLGTN--QLTVLPSAVFDRLVHLKELFMC- 120
Query: 221 CNLLGEIPESLTRLTKLKNLDLSFNGLTGSIP-SSITEMKSIEQIELFKN 269
CN L E+P + RLT L +L L N L SIP + + S+ LF N
Sbjct: 121 CNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLP-SELGKYSPLTTLDLSYNQFSGE 369
L L++N++ P NL EL L +N+L G LP + LT LDL NQ +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 370 IPEGLCEK-GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP----EMFWG 424
+P + ++ L++L + N + ++P+ + + L + L N L S+P +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSS 160
Query: 425 LPHMYLF 431
L H YLF
Sbjct: 161 LTHAYLF 167
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 9/132 (6%)
Query: 235 TKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVK-WVNMTTLLRFDASMN 293
T + L L N +T P + +++++ L N L G LPV + ++T L D N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 294 QLTGTIPNELCE--LQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELG 351
QLT +P+ + + + L+ L + N+L LP I R +L+ L L N+L+ +P G
Sbjct: 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--G 153
Query: 352 KYSPLTTLDLSY 363
+ L++L +Y
Sbjct: 154 AFDRLSSLTHAY 165
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLAN 531
L NL E N+ G L+QL LDL N+L+ +P + + ++ EL +
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCC 121
Query: 532 NRLSGEIPSEIGNLPVLNYLDLSGN 556
N+L+ E+P I L L +L L N
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQN 145
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 137 LKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYN 196
L +L +L L N P SF T S +G + TLK+L +A+N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 197 PFQPGQLPSQLSNLTNLEYLWLS 219
+LP+ SNLTNL ++ LS
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLS 161
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 56/258 (21%)
Query: 186 STLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245
S+ K + L++NP + + S SN + L++L LS C + ++ L L NL L+ N
Sbjct: 32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 246 GLTGSIPSSITEMKSIEQIELFKNSL-------------------------SGELPVKWV 280
+ P S + + S+E + + L S +LP +
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 281 NMTTLLRFDASMNQLTGTIPNELCELQLE-SLNLYENRLEGTL-PESIARSKNLSELKLF 338
N+T L+ D S N + N+L L+ +NL L+ +L P + + +KL
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL---SLDMSLNPIDFIQDQAFQGIKLH 207
Query: 339 NNKLRGGLPSE-------------------LGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379
LRG S LG++ L++ F I EGLC+ +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI----FEPSIMEGLCD-VT 262
Query: 380 LEDLVLIY-NSFSGKIPQ 396
+++ L Y N FS I +
Sbjct: 263 IDEFRLTYTNDFSDDIVK 280
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LSNL+ GN PGS + L+ L NL E +L+ I + +LN+A+N
Sbjct: 82 LSNLI---LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P+ NL L ++DLS N
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+++L L++A N F+ L + +N TNL +L LS C L L +L+ L++S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 245 NGLTGSIPSSITEMKSIEQIE 265
N L S ++ S+ ++
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLD 527
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 137 LKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYN 196
L +L +L L N P SF T S +G + TLK+L +A+N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 197 PFQPGQLPSQLSNLTNLEYLWLS 219
+LP+ SNLTNL ++ LS
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLS 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 56/258 (21%)
Query: 186 STLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245
S+ K + L++NP + + S SN + L++L LS C + ++ L L NL L+ N
Sbjct: 27 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 85
Query: 246 GLTGSIPSSITEMKSIEQIELFKNSL-------------------------SGELPVKWV 280
+ P S + + S+E + + L S +LP +
Sbjct: 86 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 281 NMTTLLRFDASMNQLTGTIPNELCELQLE-SLNLYENRLEGTL-PESIARSKNLSELKLF 338
N+T L+ D S N + N+L L+ +NL L+ +L P + + +KL
Sbjct: 146 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL---SLDMSLNPIDFIQDQAFQGIKLH 202
Query: 339 NNKLRGGLPSE-------------------LGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379
LRG S LG++ L++ F I EGLC+ +
Sbjct: 203 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI----FEPSIMEGLCD-VT 257
Query: 380 LEDLVLIY-NSFSGKIPQ 396
+++ L Y N FS I +
Sbjct: 258 IDEFRLTYTNDFSDDIVK 275
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
LSNL+ GN PGS + L+ L NL E +L+ I + +LN+A+N
Sbjct: 77 LSNLI---LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 533 RL-SGEIPSEIGNLPVLNYLDLSGN 556
+ S ++P+ NL L ++DLS N
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244
+++L L++A N F+ L + +N TNL +L LS C L L +L+ L++S
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 245 NGLTGSIPSSITEMKSIEQIE 265
N L S ++ S+ ++
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLD 522
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 213 LEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS 272
L L+L+G N L E+P + L+ L+ LDLS N LT S+P+ + ++ F N ++
Sbjct: 249 LTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 273 GELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLY--ENRLEGTLPE 324
LP ++ N+ L N L L E + L Y +NR E LP
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 489 QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVL 548
++P + LS L LDLS N L+ +P + S + +N ++ +P E GNL L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 549 NYLDLSGN 556
+L + GN
Sbjct: 319 QFLGVEGN 326
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 85 FFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLE 144
F RLP+L +L L N + P ++ +L LG N + L LK+L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 145 LQENNFTGDIPASF 158
L +N + +P SF
Sbjct: 109 LYDNQISCVMPGSF 122
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 233 RLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM 292
RL L L+L N LTG P++ I++++L GE +K ++ L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL------GENKIKEISNKMFLGLH--- 102
Query: 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNN 340
QL++LNLY+N++ +P S +L+ L L +N
Sbjct: 103 --------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 24/112 (21%)
Query: 421 MFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFS 480
+F LPH+ EL N TG + GA S++ E
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGA------------------------SHIQELQ 84
Query: 481 GDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532
NK L QL L+L +N++S +P E ++ LNLA+N
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366
L L L N+L G P + + ++ EL+L NK++ L TL+L NQ
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 367 SGEIPEGLCEKGSLEDLVLIYNSFS 391
S +P SL L L N F+
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 179 SSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE-SLTRLTKL 237
SS G +S+LK L L NP+Q + S NLTNL+ L + EI LT L
Sbjct: 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150
Query: 238 KNLDLSFNGLTGSIPSSITEMKSIEQ-----------IELFKNSLSGELPVKWVNM--TT 284
L++ L S+ ++ I +E+F + LS V+++ + T
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS---VRYLELRDTN 207
Query: 285 LLRFDAS 291
L RF S
Sbjct: 208 LARFQFS 214
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 32/238 (13%)
Query: 58 GVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLT 117
SC RV +++ P+ L+L N I R+L
Sbjct: 9 ACSCSNQASRVICTRRELAEVPASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLE 62
Query: 118 DLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGT 177
L L NL+ + L +L +LEL +N T +F ++
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 178 ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL 237
S + + +L+ L L + L NL YL L CNL +IP +LT L +L
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRL 180
Query: 238 KNLDLS-----------FNGLT------------GSIP-SSITEMKSIEQIELFKNSL 271
+ L+LS F GLT +I ++ ++KS+E++ L N+L
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 25/224 (11%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370
LNL EN ++ ++ ++L L+L N +R E+G ++ L
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNGLP------------- 83
Query: 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430
SL L L N + Q+ LR + LR+N + F +P +
Sbjct: 84 --------SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 431 FELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQI 490
+L + IS++ IP+ L+ L E GN+
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLEELELSGNRLDLIR 194
Query: 491 PGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRL 534
PGS L+ L L L +++ + K++ ELNL++N L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 179 SSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE-SLTRLTKL 237
SS G +S+LK L L NP+Q + S NLTNL+ L + EI LT L
Sbjct: 117 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 176
Query: 238 KNLDLSFNGLTGSIPSSITEMKSIEQIEL 266
L++ L S+ ++ I + L
Sbjct: 177 NELEIKALSLRNYQSQSLKSIRDIHHLTL 205
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 322 LPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLE 381
LPE+I +E++L N ++ P Y L +DLS NQ S P+ SL
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 382 DLVLIYNSFSGKIPQSL 398
LVL N + ++P+SL
Sbjct: 84 SLVLYGNKIT-ELPKSL 99
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 240 LDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299
+D GLT IP+++ E +I +I L +N++ P + L R D S NQ++
Sbjct: 16 VDCRGKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 300 PNELCELQ-LESLNLYENRLEGTLPESIARS-------------------------KNLS 333
P+ L+ L SL LY N++ LP+S+ NL+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLN 131
Query: 334 ELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393
L L++NKL+ + T+ L+ N F + C L D + +
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD-----CHLKWLADYL-----HTNP 181
Query: 394 IPQSLGKCRSLRRV 407
I S +C S RR+
Sbjct: 182 IETSGARCTSPRRL 195
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535
+ E + N PG+ + +L +DLS N++S P+ + +++N L L N+++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 536 GEIPSEI 542
E+P +
Sbjct: 94 -ELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 322 LPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLE 381
LPE+I +E++L N ++ P Y L +DLS NQ S P+ SL
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 382 DLVLIYNSFSGKIPQSL 398
LVL N + ++P+SL
Sbjct: 84 SLVLYGNKIT-ELPKSL 99
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 240 LDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299
+D GLT IP+++ E +I +I L +N++ P + L R D S NQ++
Sbjct: 16 VDCRGKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 300 PNELCELQ-LESLNLYENRLEGTLPESIARS-------------------------KNLS 333
P+ L+ L SL LY N++ LP+S+ NL+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 334 ELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393
L L++NKL+ + T+ L+ N F + C L D + +
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD-----CHLKWLADYL-----HTNP 181
Query: 394 IPQSLGKCRSLRRV 407
I S +C S RR+
Sbjct: 182 IETSGARCTSPRRL 195
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535
+ E + N PG+ + +L +DLS N++S P+ + +++N L L N+++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 536 GEIPSEI 542
E+P +
Sbjct: 94 -ELPKSL 99
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 307 QLESLNLYENRLEGTLPESI-ARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQ 365
QL+ L L N+L+ +LP + R L EL+L N+L+ K + L TL LS NQ
Sbjct: 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 366 FSGEIPEGLCEK-GSLEDLVLIYNSF 390
+P G ++ G L+ + L N F
Sbjct: 167 LQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 184 NISTLKELRLAYNPFQPGQLP-SQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLD 241
+++ L L LA N Q LP +LT L+ L+L G N L +P + RLTKLK L
Sbjct: 81 DLTELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELR 137
Query: 242 LSFNGLTGSIPS-SITEMKSIEQIELFKNSL 271
L+ N L SIP+ + ++ +++ + L N L
Sbjct: 138 LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 307 QLESLNLYENRLEGTLPESI-ARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQ 365
QL+ L L N+L+ +LP + R L EL+L N+L+ K + L TL LS NQ
Sbjct: 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 366 FSGEIPEGLCEK-GSLEDLVLIYNSF 390
+P G ++ G L+ + L N F
Sbjct: 167 LQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 184 NISTLKELRLAYNPFQPGQLP-SQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLD 241
+++ L L LA N Q LP +LT L+ L+L G N L +P + RLTKLK L
Sbjct: 81 DLTELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELR 137
Query: 242 LSFNGLTGSIPS-SITEMKSIEQIELFKNSL 271
L+ N L SIP+ + ++ +++ + L N L
Sbjct: 138 LNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 96/259 (37%), Gaps = 35/259 (13%)
Query: 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSL-EDLVLIYNS 389
N++ L L +N+LR P+ +YS L LD +N S PE LC+ L + L L +N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNE 84
Query: 390 FSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGA 449
S Q+ C +L + L N + F ++ +L+ N + +
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 450 XXXXXXXXXXXXXXGSIPDEVGLLSN------------LVEFSGDGNKFAGQIPGSLAKL 497
+E+ L N L EFS + G++ L
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 498 SQLG-----------------NLDLSENEL---SGGIPEGIESWKNINELNLANNRLSGE 537
+QL NL L+ N+L S G++ W N+ +L+L+ N L
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLK-WTNLTQLDLSYNNLHDV 263
Query: 538 IPSEIGNLPVLNYLDLSGN 556
LP L YL L N
Sbjct: 264 GNGSFSYLPSLRYLSLEYN 282
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 100/428 (23%), Positives = 159/428 (37%), Gaps = 85/428 (19%)
Query: 62 DPLTQRVTSVNLSQSQLSGPFPIFFCR------------------------LPYLAQLSL 97
D L +T +NL+ +QL P F R LP L L+L
Sbjct: 21 DDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 98 YNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPAS 157
+N ++ C NLT+L+L SN + KNL L+L N + +
Sbjct: 81 QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
Query: 158 FGEFTQXXXXXXXXXXXXGTISSS---LGNISTLKELRLAYNP---FQPG---------- 201
+ S LGN S+L++L L+ NP F PG
Sbjct: 141 GVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFA 199
Query: 202 --------------QLPSQLSNLTNLEYLWLSGCNLLGEIPESLT--RLTKLKNLDLSFN 245
+L +LSN T+++ L L+ LL + + + T L LDLS+N
Sbjct: 200 LLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYN 258
Query: 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT------GTI 299
L S + + S+ + L N++ P + ++ LR+ + T +
Sbjct: 259 NLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN-LRYLSLKRAFTKQSVSLASH 317
Query: 300 PN-ELCELQ----LESLNLYENRLEGTLPES---------IARSKNLSELKLFNNKLRGG 345
PN + Q LE LN+ +N + T + ++ SK + L+ N+
Sbjct: 318 PNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVS 377
Query: 346 LPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSL 404
L +SPL TL+L+ N S G L L L N K+ Q R++
Sbjct: 378 L-----AHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNI 432
Query: 405 RRVRLRHN 412
+ L +N
Sbjct: 433 FEIYLSYN 440
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 178 ISSSLGNISTLKELRLAYNPFQPGQL-PSQLSNLTNLEYLWLSGCNLLGEIPESL-TRLT 235
++S I T K+ RL N Q +L P +L NL+ L+ + N L IP + +LT
Sbjct: 24 LASVPAGIPTDKQ-RLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLT 81
Query: 236 KLKNLDLSFNGLTGSIP-SSITEMKSIEQIELFKN 269
+L LDL+ N L SIP + +KS+ I L+ N
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEG-IESWKNINELNLAN 531
L NL + + NK G KL+QL LDL++N L IP G ++ K++ + L N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
Query: 532 N 532
N
Sbjct: 115 N 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 106/263 (40%), Gaps = 28/263 (10%)
Query: 311 LNLYENRL------EGTLPESIARS-KNLSELKLFNNKLRG-GLPSELGKYSPLTTLDLS 362
+L+E RL + L + R+ K L+ L L N++R L GK + L ++D S
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 363 YNQFSGEIPEGL--CEKGSLEDLVLIYNSFSGKIPQSLGKCRS-LRRVRLRHNLLSGSVP 419
NQ L + +L L NS ++ GKC + R + L +SG+
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG- 215
Query: 420 EMFWGLPHMYLFELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSI--PDE---VGLLS 474
W + ++ N F+ ISKS + + +I PD+ GL
Sbjct: 216 ---WTV------DITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265
Query: 475 NLVEFSGDGNKFAGQIPGSLAK-LSQLGNLDLSENELSGGIPEGIESWKNINELNLANNR 533
+ V + F + + + L L L+L+ N+++ E N+ LNL+ N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 534 LSGEIPSEIGNLPVLNYLDLSGN 556
L S LP + Y+DL N
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKN 348
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 307 QLESLNLYENRLEGTLPESIARS-KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQ 365
Q L+L N L+ +LP + +L++L L NKL+ K + LT L+LS NQ
Sbjct: 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 366 FSGEIPEGLCEK-GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPE-MFW 423
+P G+ +K L++L L N K L+ +RL N L SVP+ +F
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Query: 424 GLPHMYLFELADNSF 438
L + L DN +
Sbjct: 146 RLTSLQYIWLHDNPW 160
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 32/238 (13%)
Query: 58 GVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLT 117
SC RV +++ P+ L+L N I R+L
Sbjct: 9 ACSCSNQASRVICTRRELAEVPASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLE 62
Query: 118 DLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQXXXXXXXXXXXXGT 177
L L NL+ + L +L +LEL +N T +F ++
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 178 ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL 237
S + + +L+ L L + L NL YL L CNL +IP +LT L +L
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRL 180
Query: 238 KNLDLS-----------FNGLT------------GSIP-SSITEMKSIEQIELFKNSL 271
+ L+LS F GLT +I ++ ++KS+E++ L N+L
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 25/224 (11%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370
LNL EN ++ ++ ++L L+L N +R E+G ++ L
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK---IEVGAFNGL-------------- 82
Query: 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430
SL L L N + Q+ LR + LR+N + F +P +
Sbjct: 83 -------PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 431 FELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGLLSNLVEFSGDGNKFAGQI 490
+L + IS++ IP+ L+ L E GN+
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLEELELSGNRLDLIR 194
Query: 491 PGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRL 534
PGS L+ L L L +++ + K++ ELNL++N L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 29/227 (12%)
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370
LNL EN ++ ++ +L L+L N +R + L TL+L ++ + I
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDNWLTVI 138
Query: 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430
P G E S LR + LR+N + F +P +
Sbjct: 139 PSGAFEYLS-----------------------KLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 431 FELADNSFTGKISKSISGAXXXXXXXXXXXXXXGSIPDEVGL--LSNLVEFSGDGNKFAG 488
+L + IS+ GA +I D L L L E GN F
Sbjct: 176 LDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232
Query: 489 QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535
PGS LS L L + +++S + ++ ELNLA+N LS
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 204 PSQLSNLTNLEYLWLSGCNLLGEIPESL-TRLTKLKNLDLSFNGLTGSIPSSITE-MKSI 261
P +LT L YL L+ N L +P + +LTKL +L L N L SIP + + +KS+
Sbjct: 57 PGVFDSLTQLTYLNLA-VNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSL 114
Query: 262 EQIELFKN 269
I LF N
Sbjct: 115 THIYLFNN 122
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 229 ESLTRLTKLKNLDLSFNGLTG---SIPSSITEMK----SIEQIELFKNSLSGELPVKWVN 281
++ + L KL+ L +S N L ++PSS+ E++ I ++ K SG + +
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIE 153
Query: 282 MTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNK 341
M + + +G P L+L L + E +L G +P+ + + L+EL L +NK
Sbjct: 154 MG------GNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET--LNELHLDHNK 204
Query: 342 LRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS------LEDLVLIYNSFSGKIP 395
++ +L +YS L L L +NQ + E GS L +L L N S ++P
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIR------MIENGSLSFLPTLRELHLDNNKLS-RVP 257
Query: 396 QSLGKCRSLRRVRLRHN 412
L + L+ V L N
Sbjct: 258 AGLPDLKLLQVVYLHTN 274
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
+ L LY+NR+ P R L+ L L NN+L K + LT L L+ NQ
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 369 EIPEG 373
IP G
Sbjct: 92 SIPRG 96
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLANNRLSGEIPSEI 542
N+ PG +L+QL LDL N+L+ +P G+ + + +L+L +N+L
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 543 GNLPVLNYLDLSGN 556
NL L ++ L N
Sbjct: 99 DNLRSLTHIWLLNN 112
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE--L 306
S+P+ I + + L+ N ++ P + +T L R D NQLT +P + +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNN 340
QL L+L +N+L+ + ++L+ + L NN
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 18/195 (9%)
Query: 252 PSSITEMKSIE---QIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELC 304
P I E+ + ++ K +L+ LP TT+L ++ L +P L
Sbjct: 1 PHPICEVSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLT 59
Query: 305 ELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSY 363
+L L+ L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+
Sbjct: 60 QLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSF 110
Query: 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFW 423
N+ + L G L++L L N P L L ++ L +N L+ +
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
Query: 424 GLPHMYLFELADNSF 438
GL ++ L +NS
Sbjct: 171 GLENLDTLLLQENSL 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRDLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K +L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 AELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 124/322 (38%), Gaps = 70/322 (21%)
Query: 85 FFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLE 144
+ L YL +L N I PL S LT+L +G+N + + L L NL+ L
Sbjct: 64 YLTNLEYL---NLNGNQITDISPL--SNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116
Query: 145 LQENNFTGDIPASFGEFTQXXXXXXXXXXXXGTISSSLGNISTLKELRLAYNPFQPGQLP 204
L E+N + DI S L N++ L L N P
Sbjct: 117 LNEDNIS-DI-------------------------SPLANLTKXYSLNLGANHNLSDLSP 150
Query: 205 SQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQI 264
LSN T L YL ++ + P + LT L +L L++N + P + + S+
Sbjct: 151 --LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204
Query: 265 ELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIP--------------NELCEL---- 306
+ N ++ PV N T L N++T P N++ ++
Sbjct: 205 TAYVNQITDITPV--ANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK 262
Query: 307 ---QLESLNLYENRLEGTLPESIARSKNLSELK---LFNNKLRGGLPSELGKYSPLTTLD 360
+L+ LN+ N++ I+ NLS+L L NN+L +G + LTTL
Sbjct: 263 DLTKLKXLNVGSNQISD-----ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 361 LSYNQFSGEIPEGLCEKGSLED 382
LS N + P K D
Sbjct: 318 LSQNHITDIRPLASLSKXDSAD 339
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRQLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRDLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 CELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K +L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 AELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE--L 306
S+P+ I + + L+ N ++ P + +T L R D NQLT +P + +
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 86
Query: 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNN 340
QL L+L +N+L+ + K+L+ + L NN
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLANNRLSGEIPSEI 542
N+ PG +L+QL LDL N+L+ +P G+ + + +L+L +N+L
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Query: 543 GNLPVLNYLDLSGN 556
NL L ++ L N
Sbjct: 107 DNLKSLTHIWLLNN 120
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
+ L LY+N++ P R L+ L L NN+L K + LT L L+ NQ
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 369 EIPEG 373
IP G
Sbjct: 100 SIPRG 104
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEG-IESWKNINELNLAN 531
L+ L D N+ G KL+QL L L++N+L IP G ++ K++ + L N
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 119
Query: 532 N 532
N
Sbjct: 120 N 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE--L 306
S+P+ I + + L+ N ++ P + +T L R D NQLT +P + +
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNN 340
QL L+L +N+L+ + K+L+ + L NN
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI-ESWKNINELNLANNRLSGEIPSEI 542
N+ PG +L+QL LDL N+L+ +P G+ + + +L+L +N+L
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 543 GNLPVLNYLDLSGN 556
NL L ++ L N
Sbjct: 99 DNLKSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368
+ L LY+N++ P R L+ L L NN+L K + LT L L+ NQ
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 369 EIPEG 373
IP G
Sbjct: 92 SIPRG 96
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 473 LSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEG-IESWKNINELNLAN 531
L+ L D N+ G KL+QL L L++N+L IP G ++ K++ + L N
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLN 111
Query: 532 N 532
N
Sbjct: 112 N 112
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 229 ESLTRLTKLKNLD--LSFNGLTGSIPS--SITEMKSIEQIELFKNSLSGELPVKWVNMTT 284
+S+T L K L +FNG +I S + +++++ L N +S P+K ++T
Sbjct: 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLK--DLTK 86
Query: 285 LLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRG 344
L + N+L N + L L L N L T +S+ KNL L + NNKL+
Sbjct: 87 LEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142
Query: 345 GLPSELGKYSPLTTLDLSYNQFS 367
+ LG S L LDL N+ +
Sbjct: 143 IV--MLGFLSKLEVLDLHGNEIT 163
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 255 ITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM---NQLTGTIP-NELCELQLES 310
++++ S ++ K +L+ LP TT+L ++ L +P L +L L+
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSP-LTTLDLSYNQFSGE 369
L + +++GTLP L L L +N+L+ LP LG+ P LT LD+S+N+ +
Sbjct: 65 AELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 370 IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMY 429
L G L++L L N P L L ++ L +N L+ + GL ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 430 LFELADNSF 438
L +NS
Sbjct: 176 TLLLQENSL 184
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 207 LSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIEL 266
LS LT L+ L L + +P L RLTKL+NL LS N ++ ++ +K+++ +EL
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDL--RALRGLKNLDVLEL 205
Query: 267 F 267
F
Sbjct: 206 F 206
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 285 LLRFDASMNQLTGTIPNELCELQ-LESLNLYENRLEGTLPESIARS-KNLSELKLFNNKL 342
L RF + +LT N L +++ L L L N E +P + +NL ++ +NKL
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEE--MPSHLFDDLENLESIEFGSNKL 182
Query: 343 RGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK-GSLEDLVLIYNSFSGKIPQ 396
R GK L L+L+ NQ +P+G+ ++ SL+ + L N + P+
Sbjct: 183 RQMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 90/232 (38%), Gaps = 45/232 (19%)
Query: 98 YNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPAS 157
YNN + + + L L N L G +PA S++K L SL L N T +IPA+
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQIT-EIPAN 371
Query: 158 FGEFTQXXXXXXXXXXXXGTISS--SLGNISTLKELRLAYN----------------PF- 198
F FT+ I + ++S + +YN PF
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 199 ------------QPGQLPSQL-SNLTNLEYLWLSGCNLLGEIP--------ESLTRLTKL 237
Q + P +L S + L + L G N L EIP E+ L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLXG-NXLTEIPKNSLKDENENFKNTYLL 490
Query: 238 KNLDLSFNGLTG-SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRF 288
++DL FN LT S T + + I+L NS S + P + +N +TL F
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGF 541
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPS--EL 350
NQL G +P E++L SLNL N++ ++ + L +NKL+ +P+ +
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398
Query: 351 GKYSPLTTLDLSYNQF 366
S + +D SYN+
Sbjct: 399 KSVSVXSAIDFSYNEI 414
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 139/385 (36%), Gaps = 82/385 (21%)
Query: 185 ISTLKELRLAYNPFQPGQLPSQLSN-LTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLS 243
+S+L L+L YN F QL + N L NLE L L+ CNL G +
Sbjct: 78 LSSLIILKLDYNQFL--QLETGAFNGLANLEVLTLTQCNLDGAV---------------- 119
Query: 244 FNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVK-WVNMTTLLRFDASMNQLTGTIPNE 302
L+G+ +T S+E + L N++ P ++NM D + N++ +
Sbjct: 120 ---LSGNFFKPLT---SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173
Query: 303 LCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLS 362
L Q + L L S ++++E L K G P K + +TTLDLS
Sbjct: 174 LLNFQGKHFTL--------LRLSSITLQDMNEYWLGWEKC--GNPF---KNTSITTLDLS 220
Query: 363 YNQFSGEIPEGLCEK---GSLEDLVL--IYN----------------SFSGKIPQSLGKC 401
N F + + + ++ L+L YN +F G + C
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280
Query: 402 ------------------RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS 443
L ++ L N ++ FWGL H+ L+ N F G I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSID 339
Query: 444 KSISGAXXXXXXXXXXXXXXGSIPDEVGL-LSNLVEFSGDGNKFAGQIPGSLAKLSQLGN 502
+ ++ D+ L L NL E + D N+ G +L+ L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Query: 503 LDLSENELSGGIP--EGIESWKNIN 525
+ L N P + + W N N
Sbjct: 400 IWLHTNPWDCSCPRIDYLSRWLNKN 424
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 259 KSIEQIELFKNSLSGELPVKWV 280
+ I I+ +KN+ +G LPVKW+
Sbjct: 205 RDINNIDYYKNTTNGRLPVKWM 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,361,305
Number of Sequences: 62578
Number of extensions: 703999
Number of successful extensions: 1898
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 505
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)