Query 005410
Match_columns 698
No_of_seqs 623 out of 4937
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-79 5.9E-84 716.7 50.1 668 20-698 26-709 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-60 5.6E-65 556.6 38.2 512 90-605 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.2E-42 9E-47 339.7 7.9 383 212-595 79-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.4E-39 3.1E-44 321.8 7.4 387 69-481 55-446 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.8E-41 6E-46 319.7 -13.5 474 90-582 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.3E-41 7.1E-46 319.2 -14.4 475 67-559 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 8.8E-39 1.9E-43 333.1 -6.6 485 68-579 23-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.6E-37 5.7E-42 322.2 -6.2 484 71-581 3-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 9.7E-35 2.1E-39 289.6 -4.4 371 185-564 6-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.1E-34 4.6E-39 287.2 -4.6 361 67-461 8-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 2.3E-28 5E-33 232.0 -2.8 165 34-199 34-201 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.3E-23 9.4E-28 242.1 26.4 363 66-460 532-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 8.2E-23 1.8E-27 239.8 28.0 339 67-437 559-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 5.5E-26 1.2E-30 216.0 -3.3 300 307-607 68-384 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.6E-20 5.7E-25 202.4 17.4 264 260-566 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.3E-20 9.2E-25 200.8 15.7 225 283-543 242-466 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 190.4 13.6 243 286-582 181-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.7E-20 1E-24 188.8 1.6 256 326-581 19-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 5.2E-18 1.1E-22 186.0 12.2 247 259-535 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-19 6.3E-24 182.9 1.4 234 325-558 46-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.2E-18 2.7E-23 147.0 -4.7 157 86-248 29-186 (264)
22 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.9E-23 146.0 -4.4 165 110-280 29-193 (264)
23 PLN03150 hypothetical protein; 99.5 8.9E-14 1.9E-18 152.6 13.8 150 18-173 367-526 (623)
24 PLN03150 hypothetical protein; 99.5 1.2E-13 2.6E-18 151.6 12.0 93 476-568 420-512 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.7E-13 1E-17 134.5 -4.4 194 377-580 74-271 (722)
26 KOG1909 Ran GTPase-activating 99.2 2.9E-12 6.2E-17 121.7 -0.3 88 425-512 156-255 (382)
27 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 131.8 -4.1 194 354-557 75-271 (722)
28 KOG1259 Nischarin, modulator o 99.2 7.5E-12 1.6E-16 115.9 1.1 204 374-588 210-418 (490)
29 KOG1259 Nischarin, modulator o 99.1 2E-11 4.3E-16 113.2 2.7 131 426-562 284-415 (490)
30 COG4886 Leucine-rich repeat (L 99.1 7.3E-11 1.6E-15 124.3 7.0 158 403-567 141-298 (394)
31 KOG1909 Ran GTPase-activating 99.1 6.2E-12 1.4E-16 119.4 -1.2 136 447-582 154-311 (382)
32 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 123.2 7.4 198 382-588 97-296 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 5.3E-11 1.1E-15 106.4 3.1 85 138-224 42-126 (175)
34 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.6E-16 119.8 -0.6 211 351-561 118-341 (505)
35 KOG3207 Beta-tubulin folding c 99.0 3.5E-11 7.6E-16 117.6 0.4 210 327-536 118-340 (505)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 98.0 5.6 84 497-583 41-127 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 5.1E-10 1.1E-14 125.6 4.2 202 66-273 523-731 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 6.4E-10 1.4E-14 81.6 3.3 61 498-558 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 7.3E-10 1.6E-14 124.4 5.2 204 88-298 521-732 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 80.0 3.0 59 91-149 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.8 5.8E-10 1.3E-14 117.4 -0.4 223 326-585 91-321 (414)
42 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 115.5 -0.6 195 375-582 92-290 (414)
43 KOG1859 Leucine-rich repeat pr 98.7 4.7E-10 1E-14 116.3 -5.4 130 450-585 164-295 (1096)
44 KOG1859 Leucine-rich repeat pr 98.4 8.9E-09 1.9E-13 107.1 -6.6 127 307-439 165-292 (1096)
45 KOG4579 Leucine-rich repeat (L 98.3 2.1E-08 4.5E-13 82.5 -3.6 133 452-588 29-165 (177)
46 KOG2120 SCF ubiquitin ligase, 98.2 5.5E-08 1.2E-12 90.7 -4.4 177 355-556 186-373 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.2 3.2E-07 6.9E-12 84.6 0.1 112 424-535 155-285 (388)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.9E-08 4.2E-13 93.7 -7.9 203 66-270 159-374 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.2 2.6E-07 5.6E-12 85.2 -0.5 113 185-297 156-286 (388)
50 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.5E-12 78.1 -2.7 137 428-568 29-168 (177)
51 PF08263 LRRNT_2: Leucine rich 98.1 3.1E-06 6.6E-11 56.5 4.0 41 22-62 2-43 (43)
52 PF12799 LRR_4: Leucine Rich r 98.0 4.5E-06 9.8E-11 55.7 2.7 36 523-559 2-37 (44)
53 KOG2982 Uncharacterized conser 98.0 1.4E-06 3.1E-11 81.5 0.3 204 88-291 69-287 (418)
54 KOG1187 Serine/threonine prote 97.9 4.4E-06 9.6E-11 85.5 2.3 33 666-698 61-94 (361)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 53.5 3.1 37 498-535 1-37 (44)
56 KOG2982 Uncharacterized conser 97.8 5E-06 1.1E-10 78.0 0.9 64 497-560 198-263 (418)
57 KOG1644 U2-associated snRNP A' 97.8 4.4E-05 9.6E-10 67.8 6.1 59 115-175 43-101 (233)
58 PF13306 LRR_5: Leucine rich r 97.8 0.00011 2.5E-09 63.4 8.4 14 397-410 30-43 (129)
59 KOG1644 U2-associated snRNP A' 97.7 6.5E-05 1.4E-09 66.8 6.1 103 91-195 43-149 (233)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00014 3E-09 62.9 8.1 106 396-506 6-111 (129)
61 PRK15386 type III secretion pr 97.7 0.0001 2.3E-09 74.6 7.6 55 376-436 50-104 (426)
62 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 74.7 7.5 136 398-557 48-188 (426)
63 KOG3665 ZYG-1-like serine/thre 97.6 3.4E-05 7.4E-10 85.1 2.7 181 66-249 60-264 (699)
64 KOG3665 ZYG-1-like serine/thre 97.2 7.6E-05 1.7E-09 82.3 0.1 82 161-245 147-230 (699)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6E-09 65.8 2.6 86 86-175 39-129 (260)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00072 1.6E-08 63.1 2.7 66 447-512 62-130 (260)
67 KOG4341 F-box protein containi 96.8 4.9E-05 1.1E-09 75.0 -5.8 87 473-559 345-439 (483)
68 KOG4341 F-box protein containi 96.7 3.1E-05 6.7E-10 76.4 -7.4 37 425-461 400-437 (483)
69 KOG2123 Uncharacterized conser 96.6 8.5E-05 1.8E-09 69.3 -5.2 66 159-226 38-103 (388)
70 KOG2123 Uncharacterized conser 96.5 0.00016 3.6E-09 67.4 -4.0 99 450-552 19-123 (388)
71 KOG1947 Leucine rich repeat pr 95.4 0.0014 3E-08 71.3 -3.7 62 161-222 242-306 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.006 1.3E-07 33.7 0.3 11 501-511 3-13 (22)
73 KOG1947 Leucine rich repeat pr 95.2 0.0025 5.4E-08 69.3 -2.7 37 328-364 186-224 (482)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.3E-07 32.7 1.1 21 523-544 1-21 (22)
75 KOG4308 LRR-containing protein 93.8 0.00048 1E-08 72.8 -11.6 84 379-462 88-184 (478)
76 KOG4308 LRR-containing protein 93.7 0.00051 1.1E-08 72.6 -11.6 109 355-463 88-217 (478)
77 KOG1025 Epidermal growth facto 92.9 0.058 1.3E-06 58.8 2.1 19 680-698 697-715 (1177)
78 KOG3653 Transforming growth fa 92.4 0.13 2.8E-06 52.5 3.7 14 685-698 216-229 (534)
79 KOG0196 Tyrosine kinase, EPH ( 92.0 0.15 3.4E-06 55.3 3.9 32 667-698 607-648 (996)
80 KOG0473 Leucine-rich repeat pr 91.6 0.0033 7.2E-08 57.4 -7.6 64 134-199 61-124 (326)
81 KOG0473 Leucine-rich repeat pr 91.2 0.01 2.2E-07 54.3 -4.9 86 471-559 39-124 (326)
82 PLN03224 probable serine/threo 91.2 0.087 1.9E-06 56.6 1.1 22 677-698 143-164 (507)
83 smart00370 LRR Leucine-rich re 90.6 0.21 4.5E-06 28.8 1.9 17 546-562 2-18 (26)
84 smart00369 LRR_TYP Leucine-ric 90.6 0.21 4.5E-06 28.8 1.9 17 546-562 2-18 (26)
85 TIGR00864 PCC polycystin catio 90.5 0.19 4.1E-06 62.6 3.2 45 552-596 1-46 (2740)
86 smart00370 LRR Leucine-rich re 88.8 0.38 8.3E-06 27.6 2.1 13 115-127 3-15 (26)
87 smart00369 LRR_TYP Leucine-ric 88.8 0.38 8.3E-06 27.6 2.1 13 115-127 3-15 (26)
88 KOG2052 Activin A type IB rece 86.5 0.86 1.9E-05 46.4 4.2 15 684-698 216-230 (513)
89 KOG3864 Uncharacterized conser 86.4 0.08 1.7E-06 47.7 -2.6 34 67-100 102-135 (221)
90 PF13516 LRR_6: Leucine Rich r 86.2 0.25 5.3E-06 27.8 0.2 15 498-512 2-16 (24)
91 KOG3864 Uncharacterized conser 85.0 0.12 2.6E-06 46.6 -2.2 81 163-243 102-184 (221)
92 KOG0193 Serine/threonine prote 83.5 0.5 1.1E-05 50.0 1.1 16 683-698 396-411 (678)
93 KOG4258 Insulin/growth factor 80.9 1.1 2.4E-05 49.2 2.6 18 681-698 996-1013(1025)
94 PLN03225 Serine/threonine-prot 80.5 0.59 1.3E-05 51.5 0.4 22 677-698 130-151 (566)
95 PF14575 EphA2_TM: Ephrin type 80.1 2 4.3E-05 32.4 3.0 18 667-684 54-72 (75)
96 smart00365 LRR_SD22 Leucine-ri 73.7 2.9 6.4E-05 24.0 1.8 14 522-535 2-15 (26)
97 KOG4242 Predicted myosin-I-bin 72.8 16 0.00035 38.0 7.9 14 261-274 356-369 (553)
98 PTZ00284 protein kinase; Provi 71.5 1.2 2.5E-05 48.2 -0.3 27 672-698 121-148 (467)
99 KOG0663 Protein kinase PITSLRE 71.5 1.2 2.5E-05 43.8 -0.3 23 676-698 73-95 (419)
100 smart00364 LRR_BAC Leucine-ric 69.5 3.4 7.4E-05 23.7 1.4 13 523-535 3-15 (26)
101 smart00368 LRR_RI Leucine rich 67.6 4.3 9.3E-05 23.8 1.7 14 546-559 2-15 (28)
102 PTZ00036 glycogen synthase kin 65.7 2.3 5E-05 45.5 0.4 22 677-698 64-85 (440)
103 KOG4242 Predicted myosin-I-bin 63.5 29 0.00062 36.2 7.5 109 474-582 354-481 (553)
104 PF08693 SKG6: Transmembrane a 60.8 4.6 0.0001 25.9 1.0 10 625-634 13-22 (40)
105 PF15102 TMEM154: TMEM154 prot 59.1 8.6 0.00019 32.9 2.6 12 641-652 76-87 (146)
106 cd05622 STKc_ROCK1 Catalytic d 58.7 3.3 7.1E-05 43.1 0.1 27 672-698 35-62 (371)
107 KOG0600 Cdc2-related protein k 57.2 2.4 5.3E-05 44.0 -1.1 18 681-698 119-136 (560)
108 KOG0986 G protein-coupled rece 56.9 5.2 0.00011 41.2 1.1 19 678-696 184-202 (591)
109 KOG0194 Protein tyrosine kinas 56.6 5.4 0.00012 42.2 1.2 14 685-698 163-176 (474)
110 PRK09605 bifunctional UGMP fam 56.5 7.2 0.00016 42.9 2.3 28 671-698 324-352 (535)
111 cd05621 STKc_ROCK2 Catalytic d 55.6 3.9 8.5E-05 42.5 0.1 22 677-698 41-62 (370)
112 cd05596 STKc_ROCK Catalytic do 53.8 3.6 7.7E-05 42.8 -0.6 22 677-698 41-62 (370)
113 PHA03210 serine/threonine kina 53.5 5.8 0.00013 43.2 1.0 21 677-697 146-166 (501)
114 PHA03209 serine/threonine kina 53.4 5.8 0.00013 41.0 0.9 23 676-698 63-85 (357)
115 KOG0192 Tyrosine kinase specif 52.3 5.5 0.00012 41.0 0.5 12 687-698 49-60 (362)
116 KOG1035 eIF-2alpha kinase GCN2 51.9 4.3 9.3E-05 47.1 -0.4 21 678-698 478-498 (1351)
117 KOG3763 mRNA export factor TAP 48.7 7.5 0.00016 41.1 0.8 65 495-560 215-284 (585)
118 PLN00034 mitogen-activated pro 47.6 6.7 0.00014 40.4 0.3 18 681-698 76-93 (353)
119 KOG1166 Mitotic checkpoint ser 46.5 7.5 0.00016 44.9 0.5 19 680-698 699-717 (974)
120 PF02009 Rifin_STEVOR: Rifin/s 43.0 13 0.00029 36.7 1.5 18 633-650 266-283 (299)
121 KOG0605 NDR and related serine 42.4 12 0.00026 39.5 1.1 20 678-697 140-159 (550)
122 PF04478 Mid2: Mid2 like cell 41.4 13 0.00028 32.1 1.0 10 679-688 112-121 (154)
123 PF12191 stn_TNFRSF12A: Tumour 40.9 11 0.00025 31.0 0.6 7 582-588 33-39 (129)
124 KOG1095 Protein tyrosine kinas 39.2 13 0.00028 43.2 0.9 17 682-698 695-711 (1025)
125 PHA03212 serine/threonine kina 39.0 13 0.00027 39.1 0.7 20 679-698 92-111 (391)
126 PHA03211 serine/threonine kina 38.3 12 0.00026 40.2 0.4 19 680-698 170-188 (461)
127 KOG3763 mRNA export factor TAP 36.7 19 0.00042 38.3 1.6 64 471-536 215-284 (585)
128 smart00367 LRR_CC Leucine-rich 36.5 26 0.00057 19.9 1.5 11 114-124 2-12 (26)
129 KOG4257 Focal adhesion tyrosin 33.6 15 0.00032 39.7 0.2 16 683-698 393-408 (974)
130 KOG1151 Tousled-like protein k 33.5 6.2 0.00013 40.3 -2.4 15 684-698 468-482 (775)
131 PF06024 DUF912: Nucleopolyhed 32.1 42 0.00091 27.1 2.5 27 625-651 64-90 (101)
132 TIGR00864 PCC polycystin catio 30.7 29 0.00062 44.7 2.0 33 504-536 1-33 (2740)
133 PF01299 Lamp: Lysosome-associ 30.7 59 0.0013 32.6 3.9 6 549-554 231-236 (306)
134 KOG1024 Receptor-like protein 27.9 49 0.0011 33.8 2.7 21 678-698 283-303 (563)
135 PF15050 SCIMP: SCIMP protein 27.5 44 0.00095 27.3 1.8 7 641-647 26-32 (133)
136 PF12877 DUF3827: Domain of un 27.4 61 0.0013 35.3 3.4 26 622-647 268-293 (684)
137 PF06084 Cytomega_TRL10: Cytom 27.1 1.1E+02 0.0023 24.8 3.8 28 574-606 12-40 (150)
138 PHA03207 serine/threonine kina 26.8 25 0.00054 36.8 0.5 19 680-698 93-111 (392)
139 KOG1006 Mitogen-activated prot 26.5 18 0.00039 34.7 -0.5 12 686-697 71-82 (361)
140 PF01102 Glycophorin_A: Glycop 26.4 53 0.0011 27.6 2.2 17 623-639 67-83 (122)
141 PTZ00046 rifin; Provisional 25.4 42 0.00091 33.9 1.7 12 639-650 331-342 (358)
142 TIGR01477 RIFIN variant surfac 25.2 43 0.00093 33.7 1.7 13 638-650 325-337 (353)
143 PHA03265 envelope glycoprotein 24.9 36 0.00077 33.8 1.1 18 637-654 363-380 (402)
144 KOG0592 3-phosphoinositide-dep 24.7 36 0.00078 36.2 1.2 18 681-698 75-92 (604)
145 PHA03283 envelope glycoprotein 21.5 1.1E+02 0.0024 32.4 3.9 29 629-657 405-434 (542)
146 KOG0694 Serine/threonine prote 20.1 44 0.00095 36.7 0.8 19 679-697 368-386 (694)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-79 Score=716.68 Aligned_cols=668 Identities=37% Similarity=0.644 Sum_probs=583.4
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCC
Q 005410 20 SLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYN 99 (698)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~ 99 (698)
..++|+.|++++|..+.+|.....+|+... +||.|.|++|+. .++|+.|+++++.+.+..+..|..+++|++|+|++
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSA--DVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCC--CCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 355889999999999988877788998654 799999999985 46899999999999999999999999999999999
Q ss_pred CCCcccCCcCCc-CCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcc
Q 005410 100 NYINSSLPLDIS-TCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTI 178 (698)
Q Consensus 100 n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 178 (698)
|.+.+.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 999988777654 999999999999999988775 46899999999999999999999999999999999999999999
Q ss_pred cccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCC
Q 005410 179 SSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEM 258 (698)
Q Consensus 179 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 258 (698)
|..+.++++|++|++++|.+. +.+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 999999999999999999998 6789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEc
Q 005410 259 KSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKL 337 (698)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 337 (698)
++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+ +|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 999999999999999999999999999999999999999999888877 8999999999999999999999999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCc
Q 005410 338 FNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417 (698)
Q Consensus 338 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 417 (698)
++|.+.+..|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccC
Q 005410 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKL 497 (698)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 497 (698)
.|..|..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 99999999999999999999999999988999999999999999998888765 46899999999999999999999999
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEc
Q 005410 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNL 576 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~l 576 (698)
++|+.|+|++|.+.+.+|+.+.++++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|..+..++ |+++++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ccCcCcccCChh-hhhhcCCcccCCCCCCCCCCC----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhheeeehh
Q 005410 577 SNNRLSGELPPL-YAKEMYRGSFLGNPGLCGDLA----GLCPKTGRSKNEGSLWIFGLIFLLAGVVFVVGVIWFYVKYRK 651 (698)
Q Consensus 577 s~N~l~~~~~~~-~~~~~~~~~~~~n~~~c~~~~----~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (698)
++|++.|.+|.. .+..+....+.||+.+|+... .+|.... +.....+++++++++++++++++++++++++++
T Consensus 579 s~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (968)
T PLN00113 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR--KTPSWWFYITCTLGAFLVLALVAFGFVFIRGRN 656 (968)
T ss_pred cCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc--ccceeeeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999976 667777888999999998632 2353221 111222222222222222222222222222222
Q ss_pred cccccc-cccccccc--c-----cccccchHHHHHhCCCcCCeEecCCCceEEeC
Q 005410 652 LKKTKK-GMALSKWK--S-----FHKIGFSEFEIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 652 ~~~~~~-~~~~~~~~--~-----~~~~~~~~l~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.++ ......|. . ...+++. +....|.++++||+|+||.||||
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ig~G~~g~Vy~~ 709 (968)
T PLN00113 657 NLELKRVENEDGTWELQFFDSKVSKSITIN--DILSSLKEENVISRGKKGASYKG 709 (968)
T ss_pred cccccccccccccccccccccccchhhhHH--HHHhhCCcccEEccCCCeeEEEE
Confidence 111111 11111122 0 1123333 34456889999999999999986
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-60 Score=556.55 Aligned_cols=512 Identities=35% Similarity=0.552 Sum_probs=478.9
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCcccc-CCCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATL-SQLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
.+++.|+|++|.+++..+.+|..+++|++|+|++|.+.+.+|..+ ..+++|++|++++|.+++.+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 479999999999999999999999999999999999998788665 4999999999999999988775 5689999999
Q ss_pred ccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCc
Q 005410 169 LFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 169 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (698)
+++|.+++..|..++++++|++|++++|.+. ..+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 9999999999999999999999999999988 688999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc-cccEEEccCccccccCChhcc
Q 005410 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~ 327 (698)
+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+ +|++|++++|.+.+.+|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 9999999999999999999999999999999999999999999999999999888877 899999999999999999999
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEE
Q 005410 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcce
Q 005410 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA 487 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 487 (698)
++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCccccc
Q 005410 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
+.+|..+ ..++|+.|++++|++++..|..+.++++|++|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+.
T Consensus 466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 9888766 458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cCeEEcccCcCcccCChhhhh--hcCCcccCCCCCCC
Q 005410 568 NLR-LNVLNLSNNRLSGELPPLYAK--EMYRGSFLGNPGLC 605 (698)
Q Consensus 568 ~~~-L~~L~ls~N~l~~~~~~~~~~--~~~~~~~~~n~~~c 605 (698)
.++ |+.|++++|++++.+|..... ........+|+..+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 998 999999999999999976322 22233344565543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-42 Score=339.70 Aligned_cols=383 Identities=22% Similarity=0.225 Sum_probs=343.7
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccC
Q 005410 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDAS 291 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 291 (698)
.-+.|++++|++..+.+..|.++++|+.+++..|.++ .+|.......+++.|+|.+|.++..-...++.++.|+.+|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4466888888888888888888999999999888888 677766677779999999998887777888889999999999
Q ss_pred CCccccccCCcccc-ccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceec
Q 005410 292 MNQLTGTIPNELCE-LQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370 (698)
Q Consensus 292 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 370 (698)
.|.++..-...+.. .++++|+|+.|.|+..-...|..+.+|..|.|++|+++...+..|.++++|+.|++..|++...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99998655455555 38999999999999877788999999999999999999888888989999999999999987554
Q ss_pred CcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCC
Q 005410 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGAN 450 (698)
Q Consensus 371 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 450 (698)
--.|.++++|+.|.+..|.+...-...|..|.++++|+|+.|+++.....++.++..|+.|+++.|.|..+-+..+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 55789999999999999999988888999999999999999999998899999999999999999999999999999999
Q ss_pred CCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccch---hhhccCCCCEE
Q 005410 451 NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPE---GIESWKNINEL 527 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L 527 (698)
+|++|+|+.|+++...++.|..+..|++|.|++|++......+|..+++|++|||++|.++..+.+ .|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 999999999999988888999999999999999999988888999999999999999999876654 57889999999
Q ss_pred eCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCC
Q 005410 528 NLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 528 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
+|.+|++....-.+|.++++|++|||.+|.|...-|++|..+.|+.|-+..-.|-|.|...|+..|..
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHH
Confidence 99999999766689999999999999999999999999999999999999999999999998887753
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=321.84 Aligned_cols=387 Identities=22% Similarity=0.221 Sum_probs=217.9
Q ss_pred EEEECCCCCCCcCCCccccCC--CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 69 TSVNLSQSQLSGPFPIFFCRL--PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
..+|.+++.+..+....+..+ +.-+.|++++|+++.+-+..|.++++|+.+++.+|.++ .+|..-....+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 345555555543322222221 23456888888877777777777777777777777776 556655556667777777
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.|+.+-.+++..++.|+.||||.|.++.+....|..-.++++|+|++|.++. --...|.++.+|.+|.|+.|+++..
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCccccc
Confidence 777776666667777777777777777776666666666677777777777662 2234566666677777777777666
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc
Q 005410 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL 306 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 306 (698)
.+..|.++++|+.|++..|+|.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+++.|+++..-..
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----- 287 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG----- 287 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-----
Confidence 666666677777777777666533234455566666666666666544444555555555555555555544344
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 386 (698)
++.+++.|+.|++++|.|..+-++....+++|++|++++|+++...+..|..+..|++|+|+
T Consensus 288 ------------------~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 288 ------------------WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ------------------cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 44444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCcCcccCCccccCCCCCcEEEccCccCcCccC---ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce
Q 005410 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP---EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
+|.+...-...|.++++|++|||+.|.++..+. ..|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.|.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 444444444444444444444444444443221 23444445555555555544444444444555555555555544
Q ss_pred eecCccccccCCceEEEC
Q 005410 464 GSIPDEVGLLSNLVEFSG 481 (698)
Q Consensus 464 ~~~~~~~~~l~~L~~L~l 481 (698)
...|.+|..+ .|++|.+
T Consensus 430 SIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eecccccccc-hhhhhhh
Confidence 4444444444 4444443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-41 Score=319.71 Aligned_cols=474 Identities=26% Similarity=0.372 Sum_probs=371.4
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
..|+.+.+++|.+....+ .+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+|..+..+.+|+.+++
T Consensus 45 v~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 468889999998865444 6788999999999999988 67788899999999999999998 78888999999999999
Q ss_pred cCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc
Q 005410 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
++|.+. ..++.++.+..|+.++..+|+++ .+|..++++.+|..+++.+|++....|+.+. ++.|++||.-.|.++
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 999988 56677888999999999999988 7889999999999999999999866555544 999999999988887
Q ss_pred cCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccc-cc-cccEEEccCccccccCChhcc
Q 005410 250 SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELC-EL-QLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~-~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+|..++.+.+|+-|++..|++. ..| .|..+..|.++.++.|++. .+|.+.+ .+ ++..||+..|+++ ..|+.+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 78888999999999999999987 556 7889999999999999988 6666555 44 7889999999998 7788888
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCC--CCCCEE-------eccCCc---Cc-cc-
Q 005410 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK--GSLEDL-------VLIYNS---FS-GK- 393 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L-------~l~~n~---l~-~~- 393 (698)
-+.+|+.||+++|.++ ..|..++++ +|+.|.+.+|.+...-.+.+..- .-|++| -++... -+ ..
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 8888999999999998 567778888 89999999998753211111100 001111 011100 00 00
Q ss_pred CCc---cccCCCCCcEEEccCccCcCccCccccCCC--CCCEEEccCCccccccchhhhcCCCCC-eeeccCccceeecC
Q 005410 394 IPQ---SLGKCRSLRRVRLRHNLLSGSVPEMFWGLP--HMYLFELADNSFTGKISKSISGANNLS-SLLVSRNNFSGSIP 467 (698)
Q Consensus 394 ~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~ 467 (698)
.+. ......+.+.|++++-+++.+..+.|..-. -.+.++++.|++. .+|..+..+..+. .+.+++|.+ +.+|
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccch
Confidence 111 122356788888888888855444554332 3778899999987 4455555554444 445555555 4778
Q ss_pred ccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCC
Q 005410 468 DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPV 547 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 547 (698)
..+..+++|..|++++|.+. .+|..+..+..|+.||+++|++. .+|+.+..+..++.+-.++|++....|+.+.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 88888999999999988776 77888888989999999999888 78888888888888888889998777777999999
Q ss_pred CcEEeCCCCcCcccCcccccccc-cCeEEcccCcCc
Q 005410 548 LNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 548 L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~ 582 (698)
|..|||.+|.+. .+|..+++++ +++|+++||||.
T Consensus 507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999998 6777888888 999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-41 Score=319.20 Aligned_cols=475 Identities=26% Similarity=0.363 Sum_probs=383.8
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
....+.++.|.+.. +...+.++..|++|++++|+++. .|.+++.+..++.++.++|++. .+|..+..+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 46678899998874 45668899999999999999864 5668999999999999999998 788889999999999999
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+. .+++.++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+. .+|...-+++.|++|+...|-+. .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhh-c
Confidence 99998 77888999999999999999998 56778889999999999999998 66776667999999999998886 6
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcc-ccccccccccccCCCccccccCCcccc
Q 005410 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVK-WVNMTTLLRFDASMNQLTGTIPNELCE 305 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~ 305 (698)
+|+.++.+.+|+.|++..|++. ..| .|..+..|++++++.|.+. .+|.. ..+++++..||+..|+++ ..|..++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 7888999999999999999998 667 7999999999999999998 45554 458999999999999999 78999988
Q ss_pred c-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCC--CCCEE-------EcccCc---c-cee-c
Q 005410 306 L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYS--PLTTL-------DLSYNQ---F-SGE-I 370 (698)
Q Consensus 306 ~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~L-------~l~~n~---l-~~~-~ 370 (698)
+ +|++||+++|.++ .+|..++++ +|+.|-+.+|.+..+-.+.+..-+ -|++| .++..+ - ... .
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 8 6999999999999 678889999 999999999987632111111000 01111 011100 0 000 1
Q ss_pred Ccc---cCCCCCCCEEeccCCcCcccCCccccCC--CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchh
Q 005410 371 PEG---LCEKGSLEDLVLIYNSFSGKIPQSLGKC--RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKS 445 (698)
Q Consensus 371 ~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (698)
+.. .....+.+.|++++-+++.+..+.|..- .-...++++.|++. +.|..+..+..+.+.-...|+..+.+|..
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 111 1223456778888877774433444432 23778899999987 66666655555554444444455577888
Q ss_pred hhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005410 446 ISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|.++..+..++.+-.++|++....|+.+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 899999999999998887 78888999999999999999887 7888888888888888888999988888899999999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 526 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999 88999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-39 Score=333.13 Aligned_cols=485 Identities=27% Similarity=0.345 Sum_probs=263.8
Q ss_pred EEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCC
Q 005410 68 VTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQE 147 (698)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (698)
++.|+++.|.+....-....+.-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.|..
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 555666666544333333334444666666666553 45556666666666666666666 4456666666666666666
Q ss_pred CcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC
Q 005410 148 NNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI 227 (698)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 227 (698)
|.+. ..|.++..+.+|+.|+++.|.+. .+|..+..+..++.+..++|.-. .. ++.. .++.+++..|.+.+.+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~-~~----lg~~-~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI-QR----LGQT-SIKKLDLRLNVLGGSF 172 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh-hh----hccc-cchhhhhhhhhcccch
Confidence 6655 56666666666666666666665 45555666666666666666111 11 1111 2566666666666665
Q ss_pred CccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCcccccc
Q 005410 228 PESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQ 307 (698)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 307 (698)
+..+..++. .||+.+|.+. . ..+..+.+|+.|....|++.... -.-++++.|+.+.|.++ .....+....
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~n 242 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLN 242 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccccccc
Confidence 555555554 5666666655 1 23455556666666666554211 12355566666666655 3333333335
Q ss_pred ccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccC
Q 005410 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY 387 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 387 (698)
+++++++.|++. .+|+|+..+.+|+.++..+|+++ .+|..+....+|+.|++..|.+. -+|......++|++|+|..
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 666666666666 34466666666666666666664 44555555556666666666655 3344444555666666666
Q ss_pred CcCcccCCccccCCC-CCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeec
Q 005410 388 NSFSGKIPQSLGKCR-SLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 388 n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (698)
|++....+..+.-.. +|..|+.+.|++.......=...+.|+.|++.+|.++...-..+.++.+|+.|+|++|++....
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 665533322222222 2455555555554322212223445666666666666555555556666666666666665333
Q ss_pred CccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCccc-CCcccCCC
Q 005410 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE-IPSEIGNL 545 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 545 (698)
...+.++..|++|+|++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.... -
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~ 475 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-S 475 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-C
Confidence 334555666666666666665 44555666666666666666665 444 555566666666666666532 222221 1
Q ss_pred CCCcEEeCCCCcCcccCcccccccc-cCeEEcccC
Q 005410 546 PVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNN 579 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N 579 (698)
++|++||+++|.-.......|..+. +..+++.-|
T Consensus 476 p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 5666666666654333333333333 333444333
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-37 Score=322.16 Aligned_cols=484 Identities=27% Similarity=0.343 Sum_probs=400.0
Q ss_pred EECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcC
Q 005410 71 VNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNF 150 (698)
Q Consensus 71 L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 150 (698)
+|.+..++. .+|..+-....++.|+++.|.+-...-+...+.-+|+.||+++|++. ..|..+..+.+|+.|.++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455666665 34444444455899999999765444445566777999999999988 7888899999999999999999
Q ss_pred cccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCcc
Q 005410 151 TGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPES 230 (698)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 230 (698)
. ..|.+..++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..++.+..+..++|.....
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC--CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 8 77888999999999999999887 77889999999999999999998 7888888999999999999832222
Q ss_pred ccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccE
Q 005410 231 LTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLES 310 (698)
Q Consensus 231 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 310 (698)
++... ++.+++..|.+.+.++..+..+++ .|++.+|.+. ...+..+.+|+.+....|++... .....+++.
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~ 223 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL---EISGPSLTA 223 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE---EecCcchhe
Confidence 22222 888999999999888888888777 8999999986 34567888999999998887632 233347999
Q ss_pred EEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcC
Q 005410 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSF 390 (698)
Q Consensus 311 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 390 (698)
|+.++|.++...+. ....+|+++++++|++++ +|+++..+.+|+.++..+|+++ .+|..+....+|+.|...+|.+
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 99999999844332 234689999999999995 5699999999999999999996 6777888889999999999999
Q ss_pred cccCCccccCCCCCcEEEccCccCcCccCccccCCCC-CCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcc
Q 005410 391 SGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPH-MYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDE 469 (698)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (698)
. -+|.....+++|++|+|..|++....+..|..... |..++.+.|++.......-..++.|+.|.+.+|.++...-..
T Consensus 300 ~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 E-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred h-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 8 56667788999999999999998666655555554 788888888887554333345678999999999999888788
Q ss_pred ccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCc
Q 005410 470 VGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLN 549 (698)
Q Consensus 470 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 549 (698)
+.+.+.|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+.++..|++|...+|.+. ..| .+..++.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 899999999999999998777778999999999999999999 77899999999999999999999 677 789999999
Q ss_pred EEeCCCCcCccc-CcccccccccCeEEcccCcC
Q 005410 550 YLDLSGNLFSGK-IPLELQNLRLNVLNLSNNRL 581 (698)
Q Consensus 550 ~L~Ls~N~l~~~-~p~~~~~~~L~~L~ls~N~l 581 (698)
.+|+|.|+++.. +|......+|++||++||..
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999999999874 44443334499999999985
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=9.7e-35 Score=289.61 Aligned_cols=371 Identities=29% Similarity=0.411 Sum_probs=284.4
Q ss_pred cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcee
Q 005410 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQI 264 (698)
Q Consensus 185 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 264 (698)
++-.+-.|+++|.++.+.+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...++.++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 4455666777777776677777777777777777777765 56777777778888888777776 445567777777777
Q ss_pred eccCCcce-eccCccccccccccccccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcC
Q 005410 265 ELFKNSLS-GELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKL 342 (698)
Q Consensus 265 ~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 342 (698)
.+..|++. .-+|..+..+..|..||+++|++. ..|..+... ++-.|+|++|+|..+....+.+++.|-.||+++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 77777664 246677777888888888888877 556555544 677788888888744445567788888888888888
Q ss_pred CcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCc-ccCCccccCCCCCcEEEccCccCcCccCcc
Q 005410 343 RGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFS-GKIPQSLGKCRSLRRVRLRHNLLSGSVPEM 421 (698)
Q Consensus 343 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 421 (698)
. .+|..+..+..|++|++++|.+.-..-..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.+. .+|..
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 45556778888888888888775333333445667777888775533 347788888888888899888887 77888
Q ss_pred ccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcce-ecccchhccCCCC
Q 005410 422 FWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQL 500 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 500 (698)
+..+++|+.|++++|+++.. .-......+|++|++|.|+++ .+|+++..++.|+.|++.+|+++ .-+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 88888899999998888743 233444568889999999988 78888888999999999998876 3468888899999
Q ss_pred CeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcc
Q 005410 501 GNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 501 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
+++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.|+.||+..|.--...|.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999999887 88999999999999999999988 7899999999999999999876655554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-34 Score=287.22 Aligned_cols=361 Identities=27% Similarity=0.408 Sum_probs=176.8
Q ss_pred cEEEEECCCCCCC-cCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005410 67 RVTSVNLSQSQLS-GPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 67 ~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
-|+.+|+++|..+ +..|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++.. +-..++.++.|+.+++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence 4566666666666 344555566666666666555543 345555555555555555555542 2233455555555555
Q ss_pred CCCcCcc-cCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCccc-ccCCCCCCEEEcccCCC
Q 005410 146 QENNFTG-DIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQ-LSNLTNLEYLWLSGCNL 223 (698)
Q Consensus 146 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l 223 (698)
.+|++.. -+|..+..+..|.+||||+|+++ ..|..+.+-+++-.|+||+|++. .+|.. +-+++.|-.|+|++|++
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchh
Confidence 5555432 23444555555555555555554 34444555555555555555554 33332 22444455555555554
Q ss_pred CCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcce-eccCccccccccccccccCCCccccccCCc
Q 005410 224 LGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS-GELPVKWVNMTTLLRFDASMNQLTGTIPNE 302 (698)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 302 (698)
. .+|..+.++..|++|++++|++....-..+..+++|+.|.+++.+-+ ..+|.++..+.+
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N------------------ 223 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN------------------ 223 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh------------------
Confidence 4 23334444555555555555443222222333344444444443221 233444444444
Q ss_pred cccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCE
Q 005410 303 LCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLED 382 (698)
Q Consensus 303 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 382 (698)
|..++++.|.+. .+|+.+..+++|+.|++++|+|+. +....+...+|++|++|.|+++ .+|++++.++.|+.
T Consensus 224 -----L~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 224 -----LRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred -----hhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 444444444444 445555555555555555555542 2222333444555555555554 44555555555555
Q ss_pred EeccCCcCccc-CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcc
Q 005410 383 LVLIYNSFSGK-IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNN 461 (698)
Q Consensus 383 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 461 (698)
|++.+|++... +|..++.+..|+++..++|.+. .+|+.+..|+.|+.|.++.|++. .+|..+.-++.|+.||+..|.
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 55555554422 4444555555555555554443 44555555555555555555544 234444445555555555443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=2.3e-28 Score=232.04 Aligned_cols=165 Identities=24% Similarity=0.299 Sum_probs=134.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCc
Q 005410 34 GLSDPTDSLASWDDTRVDTPCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDIS 111 (698)
Q Consensus 34 ~~~~~~~~~~~w~~~~~~~~C~~~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 111 (698)
+...|..+.|+-.++. ...|+..|.+-.| .+...+.++|..|+|+.+.+.+|+.+++||.||||+|.|+.+-|++|.
T Consensus 34 ~~~CP~pC~Cs~~~g~-~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGG-IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred cccCCCCcccCCCCCc-eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 3456776666554322 3467777777665 567888999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEECCC-CCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcE
Q 005410 112 TCRNLTDLNLGS-NLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKE 190 (698)
Q Consensus 112 ~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 190 (698)
++++|..|-+-+ |+|+....+.|.++..|+.|.+.-|++.....++|..+++|..|.+.+|.+..+...+|..+..+++
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 998887776665 8898888889999999999999999988888888999999999999999888666667888888888
Q ss_pred eeccCCCCC
Q 005410 191 LRLAYNPFQ 199 (698)
Q Consensus 191 L~l~~n~~~ 199 (698)
+.+.-|++.
T Consensus 193 lhlA~np~i 201 (498)
T KOG4237|consen 193 LHLAQNPFI 201 (498)
T ss_pred HhhhcCccc
Confidence 888777644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.3e-23 Score=242.13 Aligned_cols=363 Identities=21% Similarity=0.240 Sum_probs=192.8
Q ss_pred CcEEEEECCCCCCCc--CCCccccCCCCCCEEECCCCC------CcccCCcCCcCCC-CCCEEECCCCCCcccCccccCC
Q 005410 66 QRVTSVNLSQSQLSG--PFPIFFCRLPYLAQLSLYNNY------INSSLPLDISTCR-NLTDLNLGSNLLVGAIPATLSQ 136 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 136 (698)
.+|+.+.+....+.. ..+.+|.++++|+.|.+.++. +...+|..|..++ +|+.|.+.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 345555444333332 234567777777777775543 2223455555543 5777777777665 445555 3
Q ss_pred CCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEE
Q 005410 137 LKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYL 216 (698)
Q Consensus 137 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 216 (698)
..+|+.|++++|.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|... ..+|..+.++++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCEE
Confidence 567777777777766 4555666677777777776654334443 566677777777766543 4566666677777777
Q ss_pred EcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccc
Q 005410 217 WLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296 (698)
Q Consensus 217 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 296 (698)
++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+..+...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 777665444555443 5666777777766544444432 345666666666654 334332 3455555554432211
Q ss_pred cccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCC
Q 005410 297 GTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376 (698)
Q Consensus 297 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 376 (698)
. +.. .+....+......++|+.|++++|.....+|..++.+++|+.|++++|...+.+|... .
T Consensus 761 ~-l~~---------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 761 K-LWE---------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred h-ccc---------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 0 000 0000111111223455566666555544555555556666666665554333444433 4
Q ss_pred CCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005410 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 377 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
+++|+.|++++|.....+|.. .++|+.|++++|.++ .+|..+..+++|+.|++++|.-...+|..+..++.|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 555556665555433233321 234555555555554 3444555555555555555433333444444455555555
Q ss_pred ccCc
Q 005410 457 VSRN 460 (698)
Q Consensus 457 l~~n 460 (698)
+++|
T Consensus 900 l~~C 903 (1153)
T PLN03210 900 FSDC 903 (1153)
T ss_pred cCCC
Confidence 5544
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.2e-23 Score=239.82 Aligned_cols=339 Identities=22% Similarity=0.269 Sum_probs=251.3
Q ss_pred cEEEEECCCC------CCCcCCCccccCCC-CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCC
Q 005410 67 RVTSVNLSQS------QLSGPFPIFFCRLP-YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKN 139 (698)
Q Consensus 67 ~v~~L~l~~~------~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 139 (698)
+++.|.+..+ .+...+|..|..++ .|+.|++.++.+. .+|..| ...+|++|++++|.+. .++..+..+++
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence 4555555433 23334566777765 5999999998774 456666 5789999999999987 56778899999
Q ss_pred CCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcc
Q 005410 140 LKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLS 219 (698)
Q Consensus 140 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~ 219 (698)
|++|+|+++.....+|. +..+++|++|++++|.....+|..+.++++|++|++++|... ..+|..+ ++++|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCCCEEeCC
Confidence 99999999875556664 888999999999999877788999999999999999997543 3667655 78999999999
Q ss_pred cCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCcccccc
Q 005410 220 GCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299 (698)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 299 (698)
+|.....+|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++.... +...+..++.+.
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~------------- 773 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWERVQPLTPLM------------- 773 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-ccccccccchhh-------------
Confidence 99766666643 468999999999987 566554 57888888887654321 111111110000
Q ss_pred CCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCC
Q 005410 300 PNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379 (698)
Q Consensus 300 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 379 (698)
.....+|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+
T Consensus 774 --~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 774 --TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred --hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 0011267788888887776788888888899999998876544666655 6788899999888654455542 357
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc
Q 005410 380 LEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 380 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 437 (698)
|+.|++++|.+. .+|..+..+++|+.|++++|.-...+|.....+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 889999998887 577788889999999998854444566677788888888888775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-26 Score=215.97 Aligned_cols=300 Identities=23% Similarity=0.237 Sum_probs=217.0
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc-CccceecCcccCCCCCCCEEec
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY-NQFSGEIPEGLCEKGSLEDLVL 385 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l 385 (698)
....++|..|+|+...+..|+.+++|+.|||++|+|+.+.|.+|.+++.+.+|-+-+ |+|+......|.++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777777766667777777777777777777777777777777766555444 7777666666777777777777
Q ss_pred cCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccc------------cccchhhhcCCCCC
Q 005410 386 IYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFT------------GKISKSISGANNLS 453 (698)
Q Consensus 386 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~ 453 (698)
.-|++.-+..+.|..++++..|.+-+|.+..+....|..+..++.+.+..|.+. ...+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777777666677777777777777777777555557777777777777777632 11222333333333
Q ss_pred eeeccCccceeecCccccc-cCCceEEECCCCcceeccc-chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 454 SLLVSRNNFSGSIPDEVGL-LSNLVEFSGDGNKFAGQIP-GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 454 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
...+.+.++....+..+.. ..++.+-..+.+...+.-| .+|..+++|++|+|++|+++++-+.+|.+...+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 3344444443333322221 2233222333444444444 5699999999999999999999999999999999999999
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc-ccCCCCCCCCC
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG-SFLGNPGLCGD 607 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~-~~~~n~~~c~~ 607 (698)
|++.......|.++..|+.|+|.+|+|+..-|.+|..+. |.+|++-.|||.|.|-..|+..|.+. ...||| .|..
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~-~Cq~ 384 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP-RCQS 384 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC-CCCC
Confidence 999987788899999999999999999999999999988 99999999999999999998887643 344555 4653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.6e-20 Score=202.38 Aligned_cols=264 Identities=24% Similarity=0.333 Sum_probs=123.2
Q ss_pred CCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccC
Q 005410 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFN 339 (698)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 339 (698)
.-..|+++.+.++ .+|..+. ++++.|++.+|+++. +|... .+|++|++++|+++ .+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp--~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALP--PELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCC--CCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 3455666666666 4454443 356666666666652 33211 14556666666555 23321 24555555555
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccC
Q 005410 340 NKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP 419 (698)
Q Consensus 340 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 419 (698)
|.++. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.+++ +|
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 55542 2221 1345555555555542 232 12445555555555553 2221 1234555555555543 22
Q ss_pred ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCC
Q 005410 420 EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQ 499 (698)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 499 (698)
.. .++|+.|++++|+++.. |.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+.+ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 11 12455555555555532 211 1344555555555542 3321 2345555555555542 2221 234
Q ss_pred CCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccc
Q 005410 500 LGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLEL 566 (698)
Q Consensus 500 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 566 (698)
|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+
T Consensus 404 L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5555555555542 33221 23445555555555 445555555555555555555555444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.3e-20 Score=200.77 Aligned_cols=225 Identities=27% Similarity=0.386 Sum_probs=167.4
Q ss_pred ccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 005410 283 TTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLS 362 (698)
Q Consensus 283 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 362 (698)
++|+.|++++|+++. +|... .+|+.|++++|.+. .+|.. .+.|+.|++++|+++. +|. ..++|+.|+++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~lp--~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVLP--PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCCccCc-ccCcc--cccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECC
Confidence 445555555555552 23211 15677777777776 34432 2578899999999984 444 24689999999
Q ss_pred cCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005410 363 YNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 363 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
+|++++ +|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +
T Consensus 311 ~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 311 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred CCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 999985 4432 3468889999999984 4432 2589999999999995 4433 3578899999999985 4
Q ss_pred chhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccC
Q 005410 443 SKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK 522 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 522 (698)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|+.+.+++
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhcc
Confidence 433 3579999999999984 5543 3689999999999985 5643 347889999999998 7899999999
Q ss_pred CCCEEeCCCCcCcccCCcccC
Q 005410 523 NINELNLANNRLSGEIPSEIG 543 (698)
Q Consensus 523 ~L~~L~L~~N~l~~~~~~~~~ 543 (698)
+|+.|+|++|++++..+..+.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCeEECCCCCCCchHHHHHH
Confidence 999999999999988777663
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=190.44 Aligned_cols=243 Identities=27% Similarity=0.462 Sum_probs=107.8
Q ss_pred cccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCc
Q 005410 286 LRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQ 365 (698)
Q Consensus 286 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 365 (698)
..|+++++.++ .+|..+.. .++.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.
T Consensus 181 ~~L~L~~~~Lt-sLP~~Ip~-~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 181 TELRLKILGLT-TIPACIPE-QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINR 252 (754)
T ss_pred eEEEeCCCCcC-cCCccccc-CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCc
Confidence 44555555555 23332221 4555555555555 3333322 355555555555552 233221 245555555555
Q ss_pred cceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchh
Q 005410 366 FSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKS 445 (698)
Q Consensus 366 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (698)
+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++.. | ..
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P------------------------~~ 301 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-P------------------------AH 301 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-c------------------------cc
Confidence 54 3333332 24555555555544 2333221 3455555555544422 2 11
Q ss_pred hhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005410 446 ISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+
T Consensus 302 lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~ 370 (754)
T PRK15370 302 LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTIT 370 (754)
T ss_pred ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcC
Confidence 11 234455555555542 23221 2345555555555543 333222 35555555555554 3343332 3555
Q ss_pred EEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccc----cc-cCeEEcccCcCc
Q 005410 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQN----LR-LNVLNLSNNRLS 582 (698)
Q Consensus 526 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----~~-L~~L~ls~N~l~ 582 (698)
+|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+.. .+ +..+++.+|+++
T Consensus 371 ~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 371 TLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5555555555 3343332 24555555555555 23333222 12 445555555554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.7e-20 Score=188.79 Aligned_cols=256 Identities=23% Similarity=0.305 Sum_probs=147.8
Q ss_pred ccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEcccCccce------ecCcccCCCCCCCEEeccCCcCcccCC
Q 005410 326 IARSKNLSELKLFNNKLRGG----LPSELGKYSPLTTLDLSYNQFSG------EIPEGLCEKGSLEDLVLIYNSFSGKIP 395 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~l~~n~l~~~~~ 395 (698)
+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 33444455555555555321 22233344455555555554431 122334445566666666666654444
Q ss_pred ccccCCCC---CcEEEccCccCcC----ccCccccCC-CCCCEEEccCCccccc----cchhhhcCCCCCeeeccCccce
Q 005410 396 QSLGKCRS---LRRVRLRHNLLSG----SVPEMFWGL-PHMYLFELADNSFTGK----ISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 396 ~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ....+..+..|++|++++|.++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 34433333 6666766666653 122233444 6677777777776632 2334555667777777777766
Q ss_pred ee----cCccccccCCceEEECCCCcceec----ccchhccCCCCCeEEcccCccccccchhhhc-----cCCCCEEeCC
Q 005410 464 GS----IPDEVGLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGGIPEGIES-----WKNINELNLA 530 (698)
Q Consensus 464 ~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~ 530 (698)
+. ++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++.....+.. .+.|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 32 223344456777788877776533 2344566778888888888877533333321 3688888888
Q ss_pred CCcCcc----cCCcccCCCCCCcEEeCCCCcCccc----Cccccccc-c-cCeEEcccCcC
Q 005410 531 NNRLSG----EIPSEIGNLPVLNYLDLSGNLFSGK----IPLELQNL-R-LNVLNLSNNRL 581 (698)
Q Consensus 531 ~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~-~-L~~L~ls~N~l 581 (698)
+|.++. .+...+..+++|+++|+++|.++.. ....+... . ++.+++.+|+|
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 888862 2334556667888888888888854 33333333 2 77888888775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.2e-18 Score=186.00 Aligned_cols=247 Identities=24% Similarity=0.397 Sum_probs=177.0
Q ss_pred CCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEcc
Q 005410 259 KSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLF 338 (698)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 338 (698)
.+...|+++++.++ .+|..+ .+.++.|++++|+++ .+|..+.. +|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~~-nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQG-NIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhcc-CCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 35678999998887 456544 357999999999999 45655443 8999999999998 5666553 579999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCcc
Q 005410 339 NNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV 418 (698)
Q Consensus 339 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 418 (698)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|.++..
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L- 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL- 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-
Confidence 99998 5566554 57999999999998 4676554 589999999999985 454443 4788999999998853
Q ss_pred CccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCC
Q 005410 419 PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLS 498 (698)
Q Consensus 419 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 498 (698)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+. .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 4322 2578888888888775 444442 57888888888776 455443 356777777777776 3444433 2
Q ss_pred CCCeEEcccCccccccchhhh----ccCCCCEEeCCCCcCc
Q 005410 499 QLGNLDLSENELSGGIPEGIE----SWKNINELNLANNRLS 535 (698)
Q Consensus 499 ~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~ 535 (698)
+|+.|++++|++. .+|+.+. .++.+..|+|.+|.+.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5777777777776 4444332 3366677777777765
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.9e-19 Score=182.91 Aligned_cols=234 Identities=22% Similarity=0.257 Sum_probs=143.8
Q ss_pred hccCCCCCCEEEccCCcCCc------CCCccccCCCCCCEEEcccCccceecCcccCCCC---CCCEEeccCCcCcc---
Q 005410 325 SIARSKNLSELKLFNNKLRG------GLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKG---SLEDLVLIYNSFSG--- 392 (698)
Q Consensus 325 ~~~~~~~L~~L~l~~n~l~~------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~l~~n~l~~--- 392 (698)
.+...+++++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+.+
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 34444555666665555441 1223344556666666666666543333333333 36667776666652
Q ss_pred -cCCccccCC-CCCcEEEccCccCcC----ccCccccCCCCCCEEEccCCccccc----cchhhhcCCCCCeeeccCccc
Q 005410 393 -KIPQSLGKC-RSLRRVRLRHNLLSG----SVPEMFWGLPHMYLFELADNSFTGK----ISKSISGANNLSSLLVSRNNF 462 (698)
Q Consensus 393 -~~~~~~~~l-~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 462 (698)
.+...+..+ ++|+.|++++|.+++ .....+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 122334455 677777777777763 2233455667777777777777632 223344556788888888877
Q ss_pred eee----cCccccccCCceEEECCCCcceecccchhc-----cCCCCCeEEcccCcccc----ccchhhhccCCCCEEeC
Q 005410 463 SGS----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLA-----KLSQLGNLDLSENELSG----GIPEGIESWKNINELNL 529 (698)
Q Consensus 463 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L 529 (698)
.+. ++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.++. .+.+.+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 533 233455677888888888887753222222 24789999999998862 23455666788999999
Q ss_pred CCCcCccc----CCcccCCC-CCCcEEeCCCCcC
Q 005410 530 ANNRLSGE----IPSEIGNL-PVLNYLDLSGNLF 558 (698)
Q Consensus 530 ~~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l 558 (698)
++|.+... ....+... +.|++|++.+|.+
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999854 44444455 6889999988864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-18 Score=146.97 Aligned_cols=157 Identities=33% Similarity=0.537 Sum_probs=89.5
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005410 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+.+++.|.||+|+++...| .+..+.+|++|++++|+++ .+|..++.+++|+.|++.-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 3345566667777777654433 5666666666666666666 45666666666666666666665 5566666666666
Q ss_pred EEEccCcccCC-cccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccC
Q 005410 166 SLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244 (698)
Q Consensus 166 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 244 (698)
+||+.+|++.. ..|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 66666665542 34444555555555555555554 44555555555555555555444 3344444455555555555
Q ss_pred CCCc
Q 005410 245 NGLT 248 (698)
Q Consensus 245 n~l~ 248 (698)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-18 Score=145.98 Aligned_cols=165 Identities=29% Similarity=0.507 Sum_probs=119.3
Q ss_pred CcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCc
Q 005410 110 ISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLK 189 (698)
Q Consensus 110 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 189 (698)
+.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|++.-|++. +.|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 334566677777777777 45556777777777777777777 66777777777777777777776 6677777777777
Q ss_pred EeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCC
Q 005410 190 ELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKN 269 (698)
Q Consensus 190 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 269 (698)
.||+.+|.+....+|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 77777777776677777777777777777777776 56666777777777777777776 56777777777777777777
Q ss_pred cceeccCcccc
Q 005410 270 SLSGELPVKWV 280 (698)
Q Consensus 270 ~~~~~~~~~~~ 280 (698)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 776 3444333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=8.9e-14 Score=152.59 Aligned_cols=150 Identities=27% Similarity=0.499 Sum_probs=115.0
Q ss_pred cCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-----cccccccCC--CC--CcEEEEECCCCCCCcCCCccccC
Q 005410 18 TQSLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPC-----HWRGVSCDP--LT--QRVTSVNLSQSQLSGPFPIFFCR 88 (698)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C-----~~~g~~c~~--~~--~~v~~L~l~~~~l~~~~~~~~~~ 88 (698)
.+..++|..+|+++|..+.++.. .+|... +| .|.|+.|.. .. ..|+.|+|+++.+.|.+|..+..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~----~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGD----PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCC----CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence 34567788999999988765432 478642 44 799999953 11 24888888888888888888888
Q ss_pred CCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCC-CCccEE
Q 005410 89 LPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEF-TQLESL 167 (698)
Q Consensus 89 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L 167 (698)
+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|++|+|++|.+++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 8888888888888888888888888888888888888888888888888888888888888888777776543 345556
Q ss_pred EccCcc
Q 005410 168 SLFNNL 173 (698)
Q Consensus 168 ~L~~n~ 173 (698)
++.+|.
T Consensus 521 ~~~~N~ 526 (623)
T PLN03150 521 NFTDNA 526 (623)
T ss_pred EecCCc
Confidence 666554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=1.2e-13 Score=151.60 Aligned_cols=93 Identities=33% Similarity=0.625 Sum_probs=56.1
Q ss_pred ceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCC
Q 005410 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45556666666656665566666666666666666656665566666666666666666666666666666666666666
Q ss_pred CcCcccCcccccc
Q 005410 556 NLFSGKIPLELQN 568 (698)
Q Consensus 556 N~l~~~~p~~~~~ 568 (698)
|.+++.+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 6666655555443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.7e-13 Score=134.47 Aligned_cols=194 Identities=25% Similarity=0.430 Sum_probs=160.7
Q ss_pred CCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005410 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 377 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|....++..|+.++++.|+++ ..|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456789999998 77888888889999999999988 77888889999999999999998 4455566554 89999
Q ss_pred ccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005410 457 VSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 457 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 536 (698)
+++|+++ .+|..++....|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|+.+.. -.|..||+|+|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 9999998 78888888899999999999987 67778899999999999999998 45666663 45889999999999
Q ss_pred cCCcccCCCCCCcEEeCCCCcCcccCccccccc---c-cCeEEcccCc
Q 005410 537 EIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNL---R-LNVLNLSNNR 580 (698)
Q Consensus 537 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~-L~~L~ls~N~ 580 (698)
.+|-.|..|..|++|-|.+|.++ ..|..+-.. . .++|+...++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999998 566554432 3 6778777663
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=2.9e-12 Score=121.68 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=44.7
Q ss_pred CCCCCEEEccCCccccc----cchhhhcCCCCCeeeccCccceee----cCccccccCCceEEECCCCcceec----ccc
Q 005410 425 LPHMYLFELADNSFTGK----ISKSISGANNLSSLLVSRNNFSGS----IPDEVGLLSNLVEFSGDGNKFAGQ----IPG 492 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 492 (698)
-+.|+++...+|++... +...|...+.|+.+.++.|.|... ....+..|+.|+.|||.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45666666666666532 223345556666666666655421 112344555555555555554421 223
Q ss_pred hhccCCCCCeEEcccCcccc
Q 005410 493 SLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 493 ~~~~l~~L~~L~Ls~n~l~~ 512 (698)
.+..+++|++|++++|.+..
T Consensus 236 aL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred Hhcccchheeeccccccccc
Confidence 34445555555555555543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.1e-12 Score=131.80 Aligned_cols=194 Identities=30% Similarity=0.496 Sum_probs=164.1
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEc
Q 005410 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFEL 433 (698)
Q Consensus 354 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 433 (698)
.--...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++ ..|..+..|| |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33457889999998 78888999999999999999998 78889999999999999999998 5555555655 899999
Q ss_pred cCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccc
Q 005410 434 ADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGG 513 (698)
Q Consensus 434 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 513 (698)
++|+++ .+|..+.....|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+.. -.|..||+|.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence 999998 55667778899999999999998 77888999999999999999998 55666664 45999999999999 8
Q ss_pred cchhhhccCCCCEEeCCCCcCcccCCccc---CCCCCCcEEeCCCCc
Q 005410 514 IPEGIESWKNINELNLANNRLSGEIPSEI---GNLPVLNYLDLSGNL 557 (698)
Q Consensus 514 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~ 557 (698)
+|-.|..|..|++|-|.+|.+. ..|..+ +...-.++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8999999999999999999998 566554 333446788888884
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=7.5e-12 Score=115.93 Aligned_cols=204 Identities=26% Similarity=0.246 Sum_probs=137.2
Q ss_pred cCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccC---CccccccchhhhcCC
Q 005410 374 LCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELAD---NSFTGKISKSISGAN 450 (698)
Q Consensus 374 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~~~ 450 (698)
+.-+.+|..+.++.+.-..+. +....-|.|+++.+.+..++. .|.. +|.=...|... .-.+|..........
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~~l---~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VPSL---LPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred hHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc-cccc---cchhhhcCccCCCCCccCCceEEecchHh
Confidence 344556777777766433221 111123566776666544431 1110 01001111111 111222223334456
Q ss_pred CCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCC
Q 005410 451 NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLA 530 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 530 (698)
.|+++|||+|.|+ .+.+...-.+.++.|++++|.+.... .++.+++|+.||||+|.++ .+..+-..+.+.++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 7999999999997 66677788899999999999998543 3888999999999999998 444455678899999999
Q ss_pred CCcCcccCCcccCCCCCCcEEeCCCCcCcccC-cccccccc-cCeEEcccCcCcccCChh
Q 005410 531 NNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKI-PLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 531 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
+|.+.. -..++.+-+|..||+++|+|.... -..++.++ |+++.+.+||+.+.+...
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 999973 356788899999999999998632 23466777 999999999999877643
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=2e-11 Score=113.19 Aligned_cols=131 Identities=27% Similarity=0.423 Sum_probs=93.9
Q ss_pred CCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEc
Q 005410 426 PHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL 505 (698)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 505 (698)
..|+++|++.|.++ .+..+..-.|.++.|++|+|.+... +.+..+++|+.|||++|.++ .+.+.-..+-+.+.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45666666666665 2344455567777777777777632 23667788888888888776 33334455678888888
Q ss_pred ccCccccccchhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCcEEeCCCCcCcccC
Q 005410 506 SENELSGGIPEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 506 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
+.|.+... ..++.+-+|..||+++|+|... ....++++|.|+++.|.+|++.+..
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88888643 5677888899999999998753 2356899999999999999999643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.3e-11 Score=124.26 Aligned_cols=158 Identities=36% Similarity=0.556 Sum_probs=81.8
Q ss_pred CCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECC
Q 005410 403 SLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGD 482 (698)
Q Consensus 403 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 482 (698)
+|+.|++++|.+. .++.....+++|+.|++++|++... +......+.|+.|++++|++. .+|.....+..|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 3444444444443 1112333444444444444444422 222223455555555555554 334333344445556665
Q ss_pred CCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccC
Q 005410 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 483 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
+|... ..+..+..+.++..+.+.+|++. ..+..+..++++++|++++|.++. ++. ++.+.+++.||+++|.+....
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence 55432 33344556666666666666665 224556666667777777777763 333 666677777777777776555
Q ss_pred ccccc
Q 005410 563 PLELQ 567 (698)
Q Consensus 563 p~~~~ 567 (698)
|....
T Consensus 294 ~~~~~ 298 (394)
T COG4886 294 PLIAL 298 (394)
T ss_pred hhhhc
Confidence 54433
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=6.2e-12 Score=119.41 Aligned_cols=136 Identities=24% Similarity=0.373 Sum_probs=102.4
Q ss_pred hcCCCCCeeeccCccceee----cCccccccCCceEEECCCCccee----cccchhccCCCCCeEEcccCccccc----c
Q 005410 447 SGANNLSSLLVSRNNFSGS----IPDEVGLLSNLVEFSGDGNKFAG----QIPGSLAKLSQLGNLDLSENELSGG----I 514 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~ 514 (698)
..-+.|+.+...+|++... +...+...+.|+++.+..|.+.. .+...+..+++|++|||..|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3457899999999988632 22456778999999999998752 2345688899999999999998743 4
Q ss_pred chhhhccCCCCEEeCCCCcCcccCCccc-----CCCCCCcEEeCCCCcCcccC----cccccccc-cCeEEcccCcCc
Q 005410 515 PEGIESWKNINELNLANNRLSGEIPSEI-----GNLPVLNYLDLSGNLFSGKI----PLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 515 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~-L~~L~ls~N~l~ 582 (698)
...+..+++|++|++++|.+...-...| ...|+|+.|.+.+|.++..- ...+...+ |..|+|++|.+.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4566788999999999999875433222 24689999999999998632 22233345 999999999994
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1e-10 Score=123.16 Aligned_cols=198 Identities=33% Similarity=0.476 Sum_probs=155.5
Q ss_pred EEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCC-CCCCEEEccCCccccccchhhhcCCCCCeeeccCc
Q 005410 382 DLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGL-PHMYLFELADNSFTGKISKSISGANNLSSLLVSRN 460 (698)
Q Consensus 382 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 460 (698)
.+++..|.+.... .....++.++.|++.+|.++.+ +...... ++|+.|++++|.+... +..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4555555553221 2334457788899999988844 4444455 3899999999999843 456788999999999999
Q ss_pred cceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc
Q 005410 461 NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS 540 (698)
Q Consensus 461 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 540 (698)
+++ .+|......+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 998 55555558899999999999998 55555556667999999999755 56678899999999999999998 4578
Q ss_pred ccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005410 541 EIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 541 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
.++.++++++|++++|.++...+ +..+. ++.|++++|.+....|..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 88999999999999999995444 66666 999999999998776654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=5.3e-11 Score=106.45 Aligned_cols=85 Identities=27% Similarity=0.307 Sum_probs=20.7
Q ss_pred CCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEE
Q 005410 138 KNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLW 217 (698)
Q Consensus 138 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 217 (698)
.+|+.|++++|.++.. + .+..++.|++|++++|.++...+.....+++|++|++++|.+....--..+..+++|++|+
T Consensus 42 ~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 3444444444444421 1 2334444444444444444321111123444444444444443222223334444444444
Q ss_pred cccCCCC
Q 005410 218 LSGCNLL 224 (698)
Q Consensus 218 l~~n~l~ 224 (698)
+.+|.+.
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 4444443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-11 Score=119.83 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=141.2
Q ss_pred cCCCCCCEEEcccCccceecC-cccCCCCCCCEEeccCCcCccc--CCccccCCCCCcEEEccCccCcCccCc-cccCCC
Q 005410 351 GKYSPLTTLDLSYNQFSGEIP-EGLCEKGSLEDLVLIYNSFSGK--IPQSLGKCRSLRRVRLRHNLLSGSVPE-MFWGLP 426 (698)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 426 (698)
.++.+|+++.+.+..+..... .....++.++.|||+.|-+..- +......+++|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788899998887752221 3456788899999999877632 334456688999999999887643222 223567
Q ss_pred CCCEEEccCCccccc-cchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecc-cchhccCCCCCeEE
Q 005410 427 HMYLFELADNSFTGK-ISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQI-PGSLAKLSQLGNLD 504 (698)
Q Consensus 427 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 504 (698)
+|+.|.++.|.++.. +......+|+|+.|++..|............+..|++|+|++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 888888888888733 2233456788888888888533233344455777888888888776432 13456778888888
Q ss_pred cccCccccc-cchh-----hhccCCCCEEeCCCCcCccc-CCcccCCCCCCcEEeCCCCcCccc
Q 005410 505 LSENELSGG-IPEG-----IESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 505 Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
++.|.+... .|+. ...+++|+.|++++|++... .-..+..+++|+.|.+..|.++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888887643 2222 35677888888888888521 123345567777778778887753
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.5e-11 Score=117.59 Aligned_cols=210 Identities=23% Similarity=0.193 Sum_probs=141.8
Q ss_pred cCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEcccCcccee--cCcccCCCCCCCEEeccCCcCcccCCc-cccCCC
Q 005410 327 ARSKNLSELKLFNNKLRGGLP-SELGKYSPLTTLDLSYNQFSGE--IPEGLCEKGSLEDLVLIYNSFSGKIPQ-SLGKCR 402 (698)
Q Consensus 327 ~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 402 (698)
.++..|+.+.++++.+..... .....+++++.||++.|-+... +......+++|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356778888888887763322 3556788889999988866532 222345778889999988887633221 112467
Q ss_pred CCcEEEccCccCcC-ccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeec-CccccccCCceEEE
Q 005410 403 SLRRVRLRHNLLSG-SVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSI-PDEVGLLSNLVEFS 480 (698)
Q Consensus 403 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 480 (698)
.|+.|.++.|.++. .+......+|+|+.|++..|...........-+..|+.|+|++|++.... -.....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888873 23334557888889999888644444444556678888999888876322 13456788888888
Q ss_pred CCCCcceec-ccch-----hccCCCCCeEEcccCccccc-cchhhhccCCCCEEeCCCCcCcc
Q 005410 481 GDGNKFAGQ-IPGS-----LAKLSQLGNLDLSENELSGG-IPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 481 l~~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 536 (698)
++.|.+... .|+. ...+++|++|+++.|++..- .-..+..+.+|+.|....|.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888877643 2322 45678889999999888521 11345666778888888888763
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.1e-09 Score=97.96 Aligned_cols=84 Identities=38% Similarity=0.499 Sum_probs=23.7
Q ss_pred CCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCccc-CCCCCCcEEeCCCCcCcccCc-ccccccc-cCe
Q 005410 497 LSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI-GNLPVLNYLDLSGNLFSGKIP-LELQNLR-LNV 573 (698)
Q Consensus 497 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~-L~~ 573 (698)
+.+|+.|+|++|.++.. +.+..++.|++|++++|+|+ .+++.+ ..+++|++|++++|+|..... ..+..++ |+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 44555555555555532 23445555555555555555 232222 235555555555555543211 1222333 556
Q ss_pred EEcccCcCcc
Q 005410 574 LNLSNNRLSG 583 (698)
Q Consensus 574 L~ls~N~l~~ 583 (698)
|++.+||++.
T Consensus 118 L~L~~NPv~~ 127 (175)
T PF14580_consen 118 LSLEGNPVCE 127 (175)
T ss_dssp EE-TT-GGGG
T ss_pred eeccCCcccc
Confidence 6666666543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=5.1e-10 Score=125.61 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=131.8
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCC--CcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEE
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNY--INSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSL 143 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 143 (698)
..++.+.+.++.+.... .. ...+.|++|-+..|. +.......|..++.|++|||++|.--+.+|..++.+-+||+|
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 35666666666654322 11 234478888888885 555555557888999999999887777889999999999999
Q ss_pred ECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCC-CCCCcccccCCCCCCEEEcccCC
Q 005410 144 ELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ-PGQLPSQLSNLTNLEYLWLSGCN 222 (698)
Q Consensus 144 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~l~~l~~L~~L~l~~n~ 222 (698)
+++++.+. .+|..++++..|.+|++..+.-...++.....+.+||+|.+...... ....-..+.++.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99998888 78888999999999999887766566666777889999988665422 11223344556666666554333
Q ss_pred CCCcCCccccCCCCCC----EEEccCCCCcccCCccccCCCCCceeeccCCccee
Q 005410 223 LLGEIPESLTRLTKLK----NLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSG 273 (698)
Q Consensus 223 l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (698)
. .+...+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 2 1111222333333 2222222222 345567778888888888877653
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.4e-10 Score=81.63 Aligned_cols=61 Identities=41% Similarity=0.630 Sum_probs=41.9
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcC
Q 005410 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 558 (698)
++|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777655556667777777777777777766666777777777777777764
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=7.3e-10 Score=124.38 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=139.3
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCC--CcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005410 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNL--LVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 88 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
.....+...+-+|.+..... . ..+++|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++++-+||
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~-~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG-S-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhccC-C-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34667888888887644322 2 245589999999996 5656667788999999999999887779999999999999
Q ss_pred EEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCC--CcCCccccCCCCCCEEEcc
Q 005410 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLL--GEIPESLTRLTKLKNLDLS 243 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~ 243 (698)
+|++++..+. .+|..++++..|.+|++.++... ..+|.....+++|++|.+...... ...-..+..+..|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheecccccccc-ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999999998 78899999999999999988755 244666667999999998765422 2222334555666666554
Q ss_pred CCCCcccCCccccCCCCCc----eeeccCCcceeccCccccccccccccccCCCccccc
Q 005410 244 FNGLTGSIPSSITEMKSIE----QIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGT 298 (698)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 298 (698)
..... +-..+..+..|. .+.+..+.. ...+..+..+.+|+.|.+..+.+...
T Consensus 677 ~~s~~--~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 677 ISSVL--LLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred cchhH--hHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchh
Confidence 33320 111122222222 222222222 23445567778888888888777643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.3e-09 Score=80.02 Aligned_cols=59 Identities=37% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005410 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 91 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
+|++|++++|+++.+.+..|.++++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555444555555555555555555554444555555555555555543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5.8e-10 Score=117.43 Aligned_cols=223 Identities=30% Similarity=0.313 Sum_probs=99.1
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCc
Q 005410 326 IARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLR 405 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 405 (698)
+..+++|+.|++.+|++..+.. .+..+++|++|++++|.|+... .+..+..|+.|++++|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 3444555666666665553321 1444555556666665555332 233344455555555555422 2233345555
Q ss_pred EEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCC
Q 005410 406 RVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGN 484 (698)
Q Consensus 406 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 484 (698)
.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--------------------------~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--------------------------EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--------------------------cchHHHHHHHHhhcccc
Confidence 55555555543332 1 23344444444444444322 12222223333344444
Q ss_pred cceecccchhccCC--CCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCccc-
Q 005410 485 KFAGQIPGSLAKLS--QLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK- 561 (698)
Q Consensus 485 ~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 561 (698)
.++...+ +..+. .|+.+++++|++. ..++.+..+..+..|+++.|++... ..+...+.+..+....|.+...
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchh
Confidence 4432211 11111 2555555555554 2224455555566666666655522 1233444555555555555421
Q ss_pred --Cccc-cccc-ccCeEEcccCcCcccC
Q 005410 562 --IPLE-LQNL-RLNVLNLSNNRLSGEL 585 (698)
Q Consensus 562 --~p~~-~~~~-~L~~L~ls~N~l~~~~ 585 (698)
.... .... .+..+.+.+|+.....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hhhccccccccccccccccccCcccccc
Confidence 1110 1111 2555566666655443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1e-09 Score=115.54 Aligned_cols=195 Identities=28% Similarity=0.278 Sum_probs=124.4
Q ss_pred CCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCe
Q 005410 375 CEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSS 454 (698)
Q Consensus 375 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 454 (698)
..+.+++.+++.+|.+..+. ..+..+++|++|++++|.|+...+ +..++.|+.|++.+|.+... ..+..+..|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 33444444444444444221 114445666666666666654432 33445566666666666533 22334677888
Q ss_pred eeccCccceeecC-ccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCC--CCEEeCCC
Q 005410 455 LLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN--INELNLAN 531 (698)
Q Consensus 455 L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~ 531 (698)
+++++|++...-+ . ...+.+++.+++.+|.+..... +..+..+..+++..|.++.. +.+..+.. |+++++++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceec--cCcccchhHHHHHHhccc
Confidence 8888888774433 2 4678899999999998864432 44455666679999998744 22333343 89999999
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCc
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~ 582 (698)
|++. ..+..+..+..+..||+++|++...-. +.... +..+....|++.
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred Cccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 9998 555677888999999999999986332 22222 566677777665
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.70 E-value=4.7e-10 Score=116.28 Aligned_cols=130 Identities=35% Similarity=0.317 Sum_probs=101.5
Q ss_pred CCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeC
Q 005410 450 NNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529 (698)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 529 (698)
..|.+.+.+.|.+. .....+.-++.|+.|+|++|+++... .+..|+.|++|||++|.+....--...++. |+.|+|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 35777888888887 56677888899999999999998654 688999999999999999854333445555 999999
Q ss_pred CCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc-ccccccc-cCeEEcccCcCcccC
Q 005410 530 ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP-LELQNLR-LNVLNLSNNRLSGEL 585 (698)
Q Consensus 530 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~-L~~L~ls~N~l~~~~ 585 (698)
++|.++.. ..+.+|.+|+.||+++|-|.+.-. ..+..+. |+.|.|.|||+.|..
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999833 357899999999999999986221 1122233 889999999998864
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=8.9e-09 Score=107.08 Aligned_cols=127 Identities=28% Similarity=0.330 Sum_probs=87.0
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 386 (698)
.|.+.+.+.|.+. .....+.-++.++.|+|++|+++.. +.+..++.|++|||++|.+....--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 5667777777776 4556666677888888888888754 3677788888888888887733222233443 8888888
Q ss_pred CCcCcccCCccccCCCCCcEEEccCccCcCcc-CccccCCCCCCEEEccCCccc
Q 005410 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-PEMFWGLPHMYLFELADNSFT 439 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 439 (698)
+|.++.. ..+.++++|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887644 35677888888888888776421 223455667777777777764
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=2.1e-08 Score=82.48 Aligned_cols=133 Identities=26% Similarity=0.268 Sum_probs=84.8
Q ss_pred CCeeeccCccceeecCc---cccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEe
Q 005410 452 LSSLLVSRNNFSGSIPD---EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELN 528 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 528 (698)
+..++|+.|++. .+++ .+.....|+..++++|.+....+..-...+..+.|+|++|.++ .+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445566666553 2222 2333445566677777766443333344557778888888887 5666788888888888
Q ss_pred CCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005410 529 LANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 529 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
++.|.+. ..|..+..|.++-+||.-+|.+.. +|..+.-.+ ....++.+++|.+.++..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccc
Confidence 8888887 667777778888888888887763 333322222 344456777888877754
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.5e-08 Score=90.74 Aligned_cols=177 Identities=21% Similarity=0.240 Sum_probs=88.0
Q ss_pred CCCEEEcccCcccee-cCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCcc-CcCccCccccCCCCCCEEE
Q 005410 355 PLTTLDLSYNQFSGE-IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL-LSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 355 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 432 (698)
.|+++|+++..++.. .-..+..|.+|+.|.+.++++...+...+..-..|+.|+++.+. ++..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--------------- 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--------------- 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh---------------
Confidence 466666666555421 11223445555555555555554444444445555555555431 1110
Q ss_pred ccCCccccccchhhhcCCCCCeeeccCccceeecCcc-c-cccCCceEEECCCCcce---ecccchhccCCCCCeEEccc
Q 005410 433 LADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDE-V-GLLSNLVEFSGDGNKFA---GQIPGSLAKLSQLGNLDLSE 507 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~ 507 (698)
.....+.+|+.|..|+++.|.+....... + .--++|+.|+++++.-. .-+.-..+.+++|..||||+
T Consensus 251 --------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 251 --------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred --------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 01122344555555555555443221110 0 11234555555554211 01111235677777777777
Q ss_pred Cc-cccccchhhhccCCCCEEeCCCCcCcccCCcc---cCCCCCCcEEeCCCC
Q 005410 508 NE-LSGGIPEGIESWKNINELNLANNRLSGEIPSE---IGNLPVLNYLDLSGN 556 (698)
Q Consensus 508 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N 556 (698)
|. ++...-..|..++.|++|.|+.|.. .+|.. +...|+|.+||+.++
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 65 3333334556677778887777764 35543 456678888887665
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=3.2e-07 Score=84.62 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=57.2
Q ss_pred CCCCCCEEEccCCccccccc----hhhhcCCCCCeeeccCccceeecC-----ccccccCCceEEECCCCcceec----c
Q 005410 424 GLPHMYLFELADNSFTGKIS----KSISGANNLSSLLVSRNNFSGSIP-----DEVGLLSNLVEFSGDGNKFAGQ----I 490 (698)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~ 490 (698)
+-|.|+++....|++..-.. ..+..-..|+.+.+..|.|...-. ..+..+.+|+.||+.+|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34677777777777653221 112223467777777776652211 1234456666666666665422 2
Q ss_pred cchhccCCCCCeEEcccCccccccchhh------hccCCCCEEeCCCCcCc
Q 005410 491 PGSLAKLSQLGNLDLSENELSGGIPEGI------ESWKNINELNLANNRLS 535 (698)
Q Consensus 491 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~ 535 (698)
..++..++.|++|.+..|-++..-...+ ...++|+.|-..+|...
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 2334455556666666665553322221 12345555555555544
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.9e-08 Score=93.68 Aligned_cols=203 Identities=23% Similarity=0.239 Sum_probs=138.9
Q ss_pred CcEEEEECCCCCCCcC-CCccccCC-CCCCEEECCCCCCccc-CCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCE
Q 005410 66 QRVTSVNLSQSQLSGP-FPIFFCRL-PYLAQLSLYNNYINSS-LPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKS 142 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~-~~~~~~~l-~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 142 (698)
..|.++.+....+..+ +...+.-+ +.|++||||...|+.. ...-++.|.+|+.|.|.++++...+-..+..-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 4677888876555543 33444444 3589999998877643 3334678899999999999999888888999999999
Q ss_pred EECCCCcCcccC--CcCccCCCCccEEEccCcccCCccccc-ccC-cCCCcEeeccCCCCC--CCCCcccccCCCCCCEE
Q 005410 143 LELQENNFTGDI--PASFGEFTQLESLSLFNNLLNGTISSS-LGN-ISTLKELRLAYNPFQ--PGQLPSQLSNLTNLEYL 216 (698)
Q Consensus 143 L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~~~--~~~~~~~l~~l~~L~~L 216 (698)
|+++.+.--... .--+.+++.|..|+++.|.+....-.. +.. -++|..|+++++.-. ...+..-..++++|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 999986522111 112578899999999999876433221 111 257888888887421 11222233578899999
Q ss_pred EcccCC-CCCcCCccccCCCCCCEEEccCCCCcccCCcc---ccCCCCCceeeccCCc
Q 005410 217 WLSGCN-LLGEIPESLTRLTKLKNLDLSFNGLTGSIPSS---ITEMKSIEQIELFKNS 270 (698)
Q Consensus 217 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~ 270 (698)
||++|. ++......|.+++.|++|.++.|-. ++|.. +...++|.+|++.++-
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 999875 3333444577889999999988853 34543 4567889999887753
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=2.6e-07 Score=85.17 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=53.6
Q ss_pred cCCCcEeeccCCCCCCCCCcc---cccCCCCCCEEEcccCCCCCcC-----CccccCCCCCCEEEccCCCCcccC----C
Q 005410 185 ISTLKELRLAYNPFQPGQLPS---QLSNLTNLEYLWLSGCNLLGEI-----PESLTRLTKLKNLDLSFNGLTGSI----P 252 (698)
Q Consensus 185 l~~L~~L~l~~n~~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~ 252 (698)
-|.|+......|++..+..-. .+..-..|+++.+..|.|.... ...+..+.+|+.||++.|-++... .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 355666666666555222110 1111235666666666554221 111234566666666666655322 2
Q ss_pred ccccCCCCCceeeccCCcceeccCccc------cccccccccccCCCcccc
Q 005410 253 SSITEMKSIEQIELFKNSLSGELPVKW------VNMTTLLRFDASMNQLTG 297 (698)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~~~L~~L~l~~n~l~~ 297 (698)
..+...+.|+.|.+..|-++..-...+ ...|+|+.|...+|.+.+
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 233444556666666665543222211 124566666666665543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1.2e-07 Score=78.14 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCEEEccCCccccc--cchhhhcCCCCCeeeccCccceeecCccc-cccCCceEEECCCCcceecccchhccCCCCCeEE
Q 005410 428 MYLFELADNSFTGK--ISKSISGANNLSSLLVSRNNFSGSIPDEV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD 504 (698)
Q Consensus 428 L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 504 (698)
+..++++.|++-.. .+..+.....|+..+|++|.+. ..|..| ...+.++.|++++|.+. .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 44455555555311 2223344456667778888776 344433 44557788888888887 5677788888888888
Q ss_pred cccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccc
Q 005410 505 LSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 505 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
++.|.+. ..|..+..+.+|-.|+..+|.+. .+|-.+-.-......++.++.+.+.-+..++.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 8888888 56777777888888888888887 55544322233334456777777766655443
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.14 E-value=3.1e-06 Score=56.47 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcccccccC
Q 005410 22 NQDGLYLRRVKLGLS-DPTDSLASWDDTRVDTPCHWRGVSCD 62 (698)
Q Consensus 22 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~C~~~g~~c~ 62 (698)
++|+++|++||.++. +|.+.+.+|+.....+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999998 57788999998622389999999995
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4.5e-06 Score=55.70 Aligned_cols=36 Identities=47% Similarity=0.831 Sum_probs=17.3
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 523 NINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 523 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33434555555555555555554
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.4e-06 Score=81.51 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=100.5
Q ss_pred CCCCCCEEECCCCCCccc--CCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcc-cCCcCccCCCCc
Q 005410 88 RLPYLAQLSLYNNYINSS--LPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTG-DIPASFGEFTQL 164 (698)
Q Consensus 88 ~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 164 (698)
.+++++++||.+|.|++. +...+..++.|++|+|+.|.+...+...=..+.+|++|.|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 355666777777766543 22334566777777777776653322111345566777666655432 122234556666
Q ss_pred cEEEccCcccCCc--ccccccCc-CCCcEeeccCCCCCCC-CCcccccCCCCCCEEEcccCCCCCcCC-ccccCCCCCCE
Q 005410 165 ESLSLFNNLLNGT--ISSSLGNI-STLKELRLAYNPFQPG-QLPSQLSNLTNLEYLWLSGCNLLGEIP-ESLTRLTKLKN 239 (698)
Q Consensus 165 ~~L~L~~n~l~~~--~~~~~~~l-~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 239 (698)
+.|.++.|.+... ........ +.+++|++-.|..... .+-.--.-++++..+.+..|.+..... +.+..++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6676666643311 11111111 2344444443322100 000001124566666666665543321 23445566666
Q ss_pred EEccCCCCccc-CCccccCCCCCceeeccCCcceeccC------ccccccccccccccC
Q 005410 240 LDLSFNGLTGS-IPSSITEMKSIEQIELFKNSLSGELP------VKWVNMTTLLRFDAS 291 (698)
Q Consensus 240 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~l~ 291 (698)
|+++.+++... --+.+..++.|..|.+.++.+...+. .-++.+++++.|+-+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 67766666532 12345566677777777766543221 124566777766544
No 54
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.92 E-value=4.4e-06 Score=85.46 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=30.9
Q ss_pred ccccccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 666 SFHKIGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 666 ~~~~~~~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
....|+|+|+ +||++|+++++||+||||.||||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG 94 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKG 94 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEE
Confidence 4567999999 99999999999999999999997
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.3e-05 Score=53.49 Aligned_cols=37 Identities=38% Similarity=0.670 Sum_probs=25.5
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCc
Q 005410 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 535 (698)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36777777777777 44556777777778888877777
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=5e-06 Score=77.99 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=35.8
Q ss_pred CCCCCeEEcccCcccccc-chhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCcEEeCCCCcCcc
Q 005410 497 LSQLGNLDLSENELSGGI-PEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 497 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++++..+-+..|.+.... .+.+..++.+.-|+|+.|+|... .-+.+.+++.|..|.+++|++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 345555666666554322 23444555566666777666532 12445666677777777776654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.4e-05 Score=67.84 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccC
Q 005410 115 NLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLN 175 (698)
Q Consensus 115 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 175 (698)
+...+||++|.+... ..|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.|.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 445556666555421 33445555555555555555444433333445555555555443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=0.00011 Score=63.41 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=4.7
Q ss_pred cccCCCCCcEEEcc
Q 005410 397 SLGKCRSLRRVRLR 410 (698)
Q Consensus 397 ~~~~l~~L~~L~l~ 410 (698)
.|.++++|+.+++.
T Consensus 30 ~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 30 AFSNCTSLKSINFP 43 (129)
T ss_dssp TTTT-TT-SEEEES
T ss_pred hccccccccccccc
Confidence 33333334444433
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=6.5e-05 Score=66.79 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCC-cCccCCCCccEEEc
Q 005410 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIP-ASFGEFTQLESLSL 169 (698)
Q Consensus 91 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 169 (698)
....+||++|.+... ..|..++.|.+|.+++|+|+.+-|.--..+++|..|.|.+|++..... .-+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344566666655332 235566667777777777766666555556667777777766652110 12445556666666
Q ss_pred cCcccCCcc---cccccCcCCCcEeeccC
Q 005410 170 FNNLLNGTI---SSSLGNISTLKELRLAY 195 (698)
Q Consensus 170 ~~n~l~~~~---~~~~~~l~~L~~L~l~~ 195 (698)
-+|.++... --.+..+|+|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 655554211 11234455555555544
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.00014 Score=62.94 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=40.9
Q ss_pred ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCC
Q 005410 396 QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSN 475 (698)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 475 (698)
..|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +.......|..++.++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555666666553 344455555666656666665553 4444444455555555555543 222222333444444
Q ss_pred ceEEECCCCcceecccchhccCCCCCeEEcc
Q 005410 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLS 506 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 506 (698)
|+.+++..+ +.......|.++ .|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 444444432 322333334443 44444443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.0001 Score=74.62 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCC
Q 005410 376 EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN 436 (698)
Q Consensus 376 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 436 (698)
.+..++.|++++|.+.. +|. + ..+|+.|.++++.-....|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34667777777776552 331 1 2356677766543323344322 235566666555
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.0001 Score=74.65 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=84.8
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCc
Q 005410 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNL 476 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 476 (698)
+..+.+++.|++++|.++.. |. -.++|+.|.+++|.-...+|..+. ++|+.|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 44578899999999987743 42 234699999988655455665443 57899999988 443 344 356
Q ss_pred eEEECCCCcce--ecccchhccCCCCCeEEcccCc-cc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEe
Q 005410 477 VEFSGDGNKFA--GQIPGSLAKLSQLGNLDLSENE-LS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLD 552 (698)
Q Consensus 477 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 552 (698)
+.|++..+... +.+| ++|+.|.+.+++ .. ..+|..+ -++|++|++++|... ..|..+. .+|++|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 77777665543 1233 356677775433 11 0111111 157888888888866 4454443 4788888
Q ss_pred CCCCc
Q 005410 553 LSGNL 557 (698)
Q Consensus 553 Ls~N~ 557 (698)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88764
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.4e-05 Score=85.07 Aligned_cols=181 Identities=22% Similarity=0.210 Sum_probs=104.5
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCC-------------cCC--cCCCCCCEEECCCCCCc-cc
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLP-------------LDI--STCRNLTDLNLGSNLLV-GA 129 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-------------~~~--~~l~~L~~L~Ls~n~l~-~~ 129 (698)
-+++.+++.+.......-..+.... |++|.|.+-......- ..+ ..-.+|++||+++.... ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4677888877766654444444544 7777776532211100 000 01257888888875432 12
Q ss_pred Ccccc-CCCCCCCEEECCCCcCccc-CCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccc
Q 005410 130 IPATL-SQLKNLKSLELQENNFTGD-IPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQL 207 (698)
Q Consensus 130 ~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l 207 (698)
-|..+ ..+|+|+.|.+++-.+... ......++++|..||+|+..++.. ..++++++|+.|.+.+-.+.....-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 22222 3478888888877554321 223346678888888888877644 5567778888877777666643334456
Q ss_pred cCCCCCCEEEcccCCCCCcC------CccccCCCCCCEEEccCCCCcc
Q 005410 208 SNLTNLEYLWLSGCNLLGEI------PESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 208 ~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
.++++|++||++........ -+.-..+|+|+.||.+++.+..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 67777777777765443221 0112236666667666665543
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=7.6e-05 Score=82.34 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCCccEEEccCcccCCc-ccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCC-cCCccccCCCCCC
Q 005410 161 FTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLG-EIPESLTRLTKLK 238 (698)
Q Consensus 161 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~ 238 (698)
+|+|+.|.+++-.+... ......++|+|+.||+|+..++ .+ ..++++++|++|.+.+=.+.. ..-..+.++++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45555555554333211 1122234455555555555544 11 334445555555444433321 1112233445555
Q ss_pred EEEccCC
Q 005410 239 NLDLSFN 245 (698)
Q Consensus 239 ~L~l~~n 245 (698)
.||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00028 Score=65.80 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=45.5
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCC--CCcccCccccCCCCCCCEEECCCCcCcccCCcC---ccC
Q 005410 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSN--LLVGAIPATLSQLKNLKSLELQENNFTGDIPAS---FGE 160 (698)
Q Consensus 86 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~ 160 (698)
...+..|+.|++.+..++.. ..|..+++|++|++|.| ++.+.++.....+++|++|++++|++.. ++. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 33444455555555544332 13455666677777766 4444444444555666666666666652 122 334
Q ss_pred CCCccEEEccCcccC
Q 005410 161 FTQLESLSLFNNLLN 175 (698)
Q Consensus 161 l~~L~~L~L~~n~l~ 175 (698)
+.+|..|++.+|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 455555566555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00072 Score=63.09 Aligned_cols=66 Identities=26% Similarity=0.266 Sum_probs=32.5
Q ss_pred hcCCCCCeeeccCc--cceeecCccccccCCceEEECCCCcceec-ccchhccCCCCCeEEcccCcccc
Q 005410 447 SGANNLSSLLVSRN--NFSGSIPDEVGLLSNLVEFSGDGNKFAGQ-IPGSLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 447 ~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 512 (698)
..+++|++|.++.| ++.+.++.....+++|+++++++|++... .-..+..+.+|..||+.+|..+.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 34455555555555 33333333334445555555555555421 01123455556666666665553
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.76 E-value=4.9e-05 Score=75.04 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=42.0
Q ss_pred cCCceEEECCCCcce--ecccchhccCCCCCeEEcccCcccccc-----chhhhccCCCCEEeCCCCcCc-ccCCcccCC
Q 005410 473 LSNLVEFSGDGNKFA--GQIPGSLAKLSQLGNLDLSENELSGGI-----PEGIESWKNINELNLANNRLS-GEIPSEIGN 544 (698)
Q Consensus 473 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 544 (698)
++.|+.+++.++... +.+...-.+++.|++|.|++|...... ...-..+..|+.+.|+++... ...-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 444555555544322 112222245566666666666532111 111123455666666666543 122233455
Q ss_pred CCCCcEEeCCCCcCc
Q 005410 545 LPVLNYLDLSGNLFS 559 (698)
Q Consensus 545 l~~L~~L~Ls~N~l~ 559 (698)
+++|+.+++-+++-.
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 667777777666543
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.72 E-value=3.1e-05 Score=76.37 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=18.7
Q ss_pred CCCCCEEEccCCccccc-cchhhhcCCCCCeeeccCcc
Q 005410 425 LPHMYLFELADNSFTGK-ISKSISGANNLSSLLVSRNN 461 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~ 461 (698)
...|+.+.++++..... .-..+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 44555556655554322 22334455566666665554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=8.5e-05 Score=69.28 Aligned_cols=66 Identities=33% Similarity=0.353 Sum_probs=33.8
Q ss_pred cCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 159 GEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 159 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
..++.|++|.|+-|+|++.. .+..|++|++|+|..|.+.+..--..+.++++|+.|+|..|.-.+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 34445555555555554322 2445555555555555554322233455666666666666655443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00016 Score=67.43 Aligned_cols=99 Identities=23% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCcccccc-chhhhccCCCCEEe
Q 005410 450 NNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGI-PEGIESWKNINELN 528 (698)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 528 (698)
.+.+.|++.+|.++++ ..+..++.|+.|.|+-|+++..-| +..|++|++|+|..|.|...- -..+.++++|++|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455666666666522 233456666666666666654433 566666777777776665321 12346667777777
Q ss_pred CCCCcCcccCCc-----ccCCCCCCcEEe
Q 005410 529 LANNRLSGEIPS-----EIGNLPVLNYLD 552 (698)
Q Consensus 529 L~~N~l~~~~~~-----~~~~l~~L~~L~ 552 (698)
|..|.=.+..+. .+.-||+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777765554432 234566666664
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.41 E-value=0.0014 Score=71.33 Aligned_cols=62 Identities=27% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCCccEEEccCcc-cCCccccccc-CcCCCcEeeccCCC-CCCCCCcccccCCCCCCEEEcccCC
Q 005410 161 FTQLESLSLFNNL-LNGTISSSLG-NISTLKELRLAYNP-FQPGQLPSQLSNLTNLEYLWLSGCN 222 (698)
Q Consensus 161 l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~n~ 222 (698)
+++|+.|+++++. +++..-..+. .+++|++|.+.++. ++...+-.....++.|++|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555544 3322222222 24455555544443 3322222223334445555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.006 Score=33.65 Aligned_cols=11 Identities=55% Similarity=0.670 Sum_probs=4.2
Q ss_pred CeEEcccCccc
Q 005410 501 GNLDLSENELS 511 (698)
Q Consensus 501 ~~L~Ls~n~l~ 511 (698)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.0025 Score=69.34 Aligned_cols=37 Identities=27% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCCCCCEEEccCCcCCcC--CCccccCCCCCCEEEcccC
Q 005410 328 RSKNLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSYN 364 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~l~~n 364 (698)
.++.|+.+.+..+.-... .......++.|++|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 367788888777643222 1233456677888887763
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.12 E-value=0.011 Score=32.67 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=13.6
Q ss_pred CCCEEeCCCCcCcccCCcccCC
Q 005410 523 NINELNLANNRLSGEIPSEIGN 544 (698)
Q Consensus 523 ~L~~L~L~~N~l~~~~~~~~~~ 544 (698)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 56655554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.78 E-value=0.00048 Score=72.79 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCEEeccCCcCccc----CCccccCCCCCcEEEccCccCcCccCcc----ccCC-CCCCEEEccCCccccc----cchh
Q 005410 379 SLEDLVLIYNSFSGK----IPQSLGKCRSLRRVRLRHNLLSGSVPEM----FWGL-PHMYLFELADNSFTGK----ISKS 445 (698)
Q Consensus 379 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~----~~~~ 445 (698)
.+..+.+.+|.+... +...+...++|..|++++|.+.+..-.. +... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 367778888877643 2244556777888888888776322111 1111 3455666666666533 2333
Q ss_pred hhcCCCCCeeeccCccc
Q 005410 446 ISGANNLSSLLVSRNNF 462 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l 462 (698)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44456667777777665
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.68 E-value=0.00051 Score=72.55 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred CCCEEEcccCcccee----cCcccCCCCCCCEEeccCCcCcccCC----ccccCC-CCCcEEEccCccCcCc----cCcc
Q 005410 355 PLTTLDLSYNQFSGE----IPEGLCEKGSLEDLVLIYNSFSGKIP----QSLGKC-RSLRRVRLRHNLLSGS----VPEM 421 (698)
Q Consensus 355 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~~ 421 (698)
.+..+.+.+|.+... +-..+...+.|+.|++++|.+..... ..+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888887643 22345677889999999998874322 222222 4677788888888753 3345
Q ss_pred ccCCCCCCEEEccCCccccc----cchhhh----cCCCCCeeeccCccce
Q 005410 422 FWGLPHMYLFELADNSFTGK----ISKSIS----GANNLSSLLVSRNNFS 463 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~----~~~~~~----~~~~L~~L~l~~n~l~ 463 (698)
+...+.++.++++.|.+... ++..+. ...++++|.+++|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 55688899999999988521 122222 2455666666666554
No 77
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=92.89 E-value=0.058 Score=58.76 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=16.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.+.+...||+|.||+||||
T Consensus 697 elkk~kvLGsgAfGtV~kG 715 (1177)
T KOG1025|consen 697 ELKKDKVLGSGAFGTVYKG 715 (1177)
T ss_pred hhhhhceeccccceeEEee
Confidence 3566778999999999998
No 78
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=92.41 E-value=0.13 Score=52.47 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=12.6
Q ss_pred CeEecCCCceEEeC
Q 005410 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|+||.||||
T Consensus 216 eli~~Grfg~V~Ka 229 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKA 229 (534)
T ss_pred HHhhcCccceeehh
Confidence 45999999999997
No 79
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=92.02 E-value=0.15 Score=55.30 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=26.5
Q ss_pred cccccchHH-HHHhCCCc---------CCeEecCCCceEEeC
Q 005410 667 FHKIGFSEF-EIADCLKE---------ENLIGSGASGKSQEG 698 (698)
Q Consensus 667 ~~~~~~~~l-~aT~~f~~---------~~~iG~gg~g~VYkg 698 (698)
++.++|+|= +|-+.|.+ +.+||.|-||.||+|
T Consensus 607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~G 648 (996)
T KOG0196|consen 607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSG 648 (996)
T ss_pred cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecc
Confidence 445788888 88777775 578999999999987
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.57 E-value=0.0033 Score=57.36 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=31.4
Q ss_pred cCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCC
Q 005410 134 LSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 199 (698)
|+-++.|..|+++.|++. ..|..++....++.+++..|..+ ..|.+++..++++++++-.|.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 444444455555555544 44444555455555555544443 34444555555555555555443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.22 E-value=0.01 Score=54.34 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=60.4
Q ss_pred cccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcE
Q 005410 471 GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNY 550 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 550 (698)
......+.||++.|++. -+...|.-++.|..||++.|.+. ..|+.+.....+..+++..|..+ ..|.+++..+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455566666666654 22334555667777788877776 66777777777788888877777 67778888888888
Q ss_pred EeCCCCcCc
Q 005410 551 LDLSGNLFS 559 (698)
Q Consensus 551 L~Ls~N~l~ 559 (698)
+++..|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888765
No 82
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=91.17 E-value=0.087 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.+++|...++||+||||+||||
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG 164 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEG 164 (507)
T ss_pred cccCceEeeEeecCCCeEEEEE
Confidence 4678999999999999999986
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.61 E-value=0.21 Score=28.75 Aligned_cols=17 Identities=47% Similarity=0.479 Sum_probs=9.2
Q ss_pred CCCcEEeCCCCcCcccC
Q 005410 546 PVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~~~~ 562 (698)
++|++|+|++|+|+...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 44555566666555433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.61 E-value=0.21 Score=28.75 Aligned_cols=17 Identities=47% Similarity=0.479 Sum_probs=9.2
Q ss_pred CCCcEEeCCCCcCcccC
Q 005410 546 PVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~~~~ 562 (698)
++|++|+|++|+|+...
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 44555566666555433
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.49 E-value=0.19 Score=62.62 Aligned_cols=45 Identities=22% Similarity=0.094 Sum_probs=38.9
Q ss_pred eCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc
Q 005410 552 DLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 552 ~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
||++|+|+.+.+..|..+. |+.|+|++|||.|.|...|+..|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 6889999988888888886 99999999999999999888777543
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.84 E-value=0.38 Score=27.61 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=6.0
Q ss_pred CCCEEECCCCCCc
Q 005410 115 NLTDLNLGSNLLV 127 (698)
Q Consensus 115 ~L~~L~Ls~n~l~ 127 (698)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.84 E-value=0.38 Score=27.61 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=6.0
Q ss_pred CCCEEECCCCCCc
Q 005410 115 NLTDLNLGSNLLV 127 (698)
Q Consensus 115 ~L~~L~Ls~n~l~ 127 (698)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 88
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.47 E-value=0.86 Score=46.44 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=13.3
Q ss_pred CCeEecCCCceEEeC
Q 005410 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
-..||+|.||.|.||
T Consensus 216 ~e~IGkGRyGEVwrG 230 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRG 230 (513)
T ss_pred EEEecCccccceeec
Confidence 457999999999987
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=0.08 Score=47.74 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=23.6
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNN 100 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n 100 (698)
.|+.+|-+++.|..+--..+.+++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 5777888887777665556666666677776666
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.23 E-value=0.25 Score=27.80 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=6.4
Q ss_pred CCCCeEEcccCcccc
Q 005410 498 SQLGNLDLSENELSG 512 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~ 512 (698)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=0.12 Score=46.65 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=35.0
Q ss_pred CccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCccccc-CCCCCCEEEcccCC-CCCcCCccccCCCCCCEE
Q 005410 163 QLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLS-NLTNLEYLWLSGCN-LLGEIPESLTRLTKLKNL 240 (698)
Q Consensus 163 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 240 (698)
.++.+|-++..|..+.-+.+.+++.++.|.+.++..-...--+.++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555555554444444444555555555444321110001111 12456666666553 333333344455555555
Q ss_pred Ecc
Q 005410 241 DLS 243 (698)
Q Consensus 241 ~l~ 243 (698)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 92
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=83.52 E-value=0.5 Score=50.00 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.8
Q ss_pred cCCeEecCCCceEEeC
Q 005410 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
....||+|.||+||||
T Consensus 396 l~~rIGsGsFGtV~Rg 411 (678)
T KOG0193|consen 396 LGERIGSGSFGTVYRG 411 (678)
T ss_pred ccceeccccccceeec
Confidence 3456999999999998
No 93
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=80.91 E-value=1.1 Score=49.18 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.4
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
-...+.+|+|+||+||.|
T Consensus 996 it~~relg~gsfg~Vy~g 1013 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEG 1013 (1025)
T ss_pred HhhhhhhccCccceEEEe
Confidence 556778999999999976
No 94
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=80.54 E-value=0.59 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++++|...+.||+||||.||+|
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka 151 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKA 151 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEE
Confidence 6778898999999999999986
No 95
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=80.06 E-value=2 Score=32.45 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=13.6
Q ss_pred cccccchHH-HHHhCCCcC
Q 005410 667 FHKIGFSEF-EIADCLKEE 684 (698)
Q Consensus 667 ~~~~~~~~l-~aT~~f~~~ 684 (698)
++-.+|+|- +|=..|.++
T Consensus 54 IDP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 54 IDPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp --GGGSSSHHHHHHHCSSB
T ss_pred cCcccccCHHHHHHHHHhh
Confidence 344789999 999999876
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.67 E-value=2.9 Score=24.03 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=7.4
Q ss_pred CCCCEEeCCCCcCc
Q 005410 522 KNINELNLANNRLS 535 (698)
Q Consensus 522 ~~L~~L~L~~N~l~ 535 (698)
.+|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.80 E-value=16 Score=37.98 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.7
Q ss_pred CceeeccCCcceec
Q 005410 261 IEQIELFKNSLSGE 274 (698)
Q Consensus 261 L~~L~l~~n~~~~~ 274 (698)
+++|....|...+.
T Consensus 356 ~q~l~~rdnnldge 369 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGE 369 (553)
T ss_pred eeEeeccccccccc
Confidence 55666666555443
No 98
>PTZ00284 protein kinase; Provisional
Probab=71.55 E-value=1.2 Score=48.16 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.5
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++ .+++.|.....||+|+||+||+|
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a 148 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEA 148 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEE
Confidence 4455 67788988899999999999985
No 99
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=71.45 E-value=1.2 Score=43.79 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.-+.|-.=|.|++|.||.||||
T Consensus 73 rsv~efe~lnrI~EGtyGiVYRa 95 (419)
T KOG0663|consen 73 RSVEEFEKLNRIEEGTYGVVYRA 95 (419)
T ss_pred ccHHHHHHHhhcccCcceeEEEe
Confidence 34445667789999999999997
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.49 E-value=3.4 Score=23.70 Aligned_cols=13 Identities=46% Similarity=0.856 Sum_probs=6.7
Q ss_pred CCCEEeCCCCcCc
Q 005410 523 NINELNLANNRLS 535 (698)
Q Consensus 523 ~L~~L~L~~N~l~ 535 (698)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.64 E-value=4.3 Score=23.79 Aligned_cols=14 Identities=50% Similarity=0.657 Sum_probs=9.6
Q ss_pred CCCcEEeCCCCcCc
Q 005410 546 PVLNYLDLSGNLFS 559 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~ 559 (698)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777775
No 102
>PTZ00036 glycogen synthase kinase; Provisional
Probab=65.71 E-value=2.3 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.3
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.|....+||+|+||.||+|
T Consensus 64 ~~~~y~~~~~LG~G~fg~Vy~~ 85 (440)
T PTZ00036 64 PNKSYKLGNIIGNGSFGVVYEA 85 (440)
T ss_pred cCCeEEEeEEEEeCCCEEEEEE
Confidence 3456777889999999999985
No 103
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.50 E-value=29 Score=36.22 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCceEEECCCCcceecccch--hccCCCCCeEEcccCccc---c--cc--chhh--hccCCCCEEeCCCCcCcccCC---
Q 005410 474 SNLVEFSGDGNKFAGQIPGS--LAKLSQLGNLDLSENELS---G--GI--PEGI--ESWKNINELNLANNRLSGEIP--- 539 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~---~--~~--~~~~--~~l~~L~~L~L~~N~l~~~~~--- 539 (698)
..+++|....|.+.+..... ...-++.+.+++..-.-. + .. +-.. ....-+.++.++.|.+.....
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 44677777777666544322 233345555555442210 0 00 0000 112346677777777764322
Q ss_pred cccCCCCCCcEEeCCCCcCcc----cCccccccc-ccCeEEcccCcCc
Q 005410 540 SEIGNLPVLNYLDLSGNLFSG----KIPLELQNL-RLNVLNLSNNRLS 582 (698)
Q Consensus 540 ~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~-~L~~L~ls~N~l~ 582 (698)
..+..-+.+..||+++|.... .+|..+..- +++.+..+.|...
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 223445678888888887654 233333222 2555555555443
No 104
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=60.78 E-value=4.6 Score=25.92 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.6
Q ss_pred hhhhHHHHHH
Q 005410 625 WIFGLIFLLA 634 (698)
Q Consensus 625 ~~~~~~~~~~ 634 (698)
+.++++..++
T Consensus 13 Ia~~VvVPV~ 22 (40)
T PF08693_consen 13 IAVGVVVPVG 22 (40)
T ss_pred EEEEEEechH
Confidence 3333333333
No 105
>PF15102 TMEM154: TMEM154 protein family
Probab=59.13 E-value=8.6 Score=32.92 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.7
Q ss_pred HHhhheeeehhc
Q 005410 641 GVIWFYVKYRKL 652 (698)
Q Consensus 641 ~~~~~~~~~~~~ 652 (698)
+++++++|||+.
T Consensus 76 V~lv~~~kRkr~ 87 (146)
T PF15102_consen 76 VCLVIYYKRKRT 87 (146)
T ss_pred HHheeEEeeccc
Confidence 333344444433
No 106
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=58.74 E-value=3.3 Score=43.11 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=21.7
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++++ .+.++|.....||+|+||.||++
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~ 62 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLV 62 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEE
Confidence 4455 56678888889999999999974
No 107
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=57.24 E-value=2.4 Score=44.05 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.+-.+||+|-||.||||
T Consensus 119 feki~kIGeGTyg~VYkA 136 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKA 136 (560)
T ss_pred HHHHHHhcCcchhheeEe
Confidence 444566999999999996
No 108
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=56.94 E-value=5.2 Score=41.21 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=16.6
Q ss_pred HhCCCcCCeEecCCCceEE
Q 005410 678 ADCLKEENLIGSGASGKSQ 696 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VY 696 (698)
.+.|..-++||+||||.||
T Consensus 184 ~n~F~~~RvlGkGGFGEV~ 202 (591)
T KOG0986|consen 184 KNTFRVYRVLGKGGFGEVC 202 (591)
T ss_pred ccceeeeEEEeccccccee
Confidence 3458888999999999999
No 109
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=56.57 E-value=5.4 Score=42.19 Aligned_cols=14 Identities=36% Similarity=0.632 Sum_probs=13.0
Q ss_pred CeEecCCCceEEeC
Q 005410 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|.||.||+|
T Consensus 163 kkLGeGaFGeV~~G 176 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKG 176 (474)
T ss_pred ceeecccccEEEEE
Confidence 67999999999997
No 110
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=56.49 E-value=7.2 Score=42.90 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.2
Q ss_pred cchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 671 GFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 671 ~~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++... ..+..|...++||+|+||.||||
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~ 352 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKG 352 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEE
Confidence 34333 45566678899999999999984
No 111
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=55.63 E-value=3.9 Score=42.51 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.6
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.+++|.....||+|+||.||+|
T Consensus 41 ~~~~y~~~~~lG~G~fg~Vy~~ 62 (370)
T cd05621 41 KAEDYDVVKVIGRGAFGEVQLV 62 (370)
T ss_pred CHHHCeEEEEEEecCCeEEEEE
Confidence 3455666778999999999974
No 112
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=53.82 E-value=3.6 Score=42.83 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=17.7
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++|.....||+|+||.||+|
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~ 62 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLV 62 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEE
Confidence 3456777788999999999974
No 113
>PHA03210 serine/threonine kinase US3; Provisional
Probab=53.53 E-value=5.8 Score=43.19 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=17.5
Q ss_pred HHhCCCcCCeEecCCCceEEe
Q 005410 677 IADCLKEENLIGSGASGKSQE 697 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYk 697 (698)
..+.|.....||+|+||+||+
T Consensus 146 ~~~~Y~ii~~LG~G~fG~Vyl 166 (501)
T PHA03210 146 FLAHFRVIDDLPAGAFGKIFI 166 (501)
T ss_pred hhhccEEEeEecCCCCcceEE
Confidence 345677778899999999996
No 114
>PHA03209 serine/threonine kinase US3; Provisional
Probab=53.38 E-value=5.8 Score=40.99 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.6
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.+|.....||+|+||.||+|
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~ 85 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVA 85 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEE
Confidence 45667888889999999999985
No 115
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=52.29 E-value=5.5 Score=40.97 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=11.5
Q ss_pred EecCCCceEEeC
Q 005410 687 IGSGASGKSQEG 698 (698)
Q Consensus 687 iG~gg~g~VYkg 698 (698)
||+|+||+||||
T Consensus 49 iG~G~~g~V~~~ 60 (362)
T KOG0192|consen 49 LGSGSFGTVYKG 60 (362)
T ss_pred cccCCceeEEEE
Confidence 999999999986
No 116
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=51.91 E-value=4.3 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.6
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
-+.|-+=..+|+||||.|||.
T Consensus 478 ~~DFEEL~lLGkGGFG~VvkV 498 (1351)
T KOG1035|consen 478 LNDFEELELLGKGGFGSVVKV 498 (1351)
T ss_pred hhhhHHHHHhcCCCCceEEEE
Confidence 345666678999999999983
No 117
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.69 E-value=7.5 Score=41.13 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=36.9
Q ss_pred ccCCCCCeEEcccCcccccc--chhhhccCCCCEEeCCCC--cCcccC-CcccCCCCCCcEEeCCCCcCcc
Q 005410 495 AKLSQLGNLDLSENELSGGI--PEGIESWKNINELNLANN--RLSGEI-PSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 495 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N--~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
.+.+.+..+.|++|++...- ...-...+.|++|+|++| .+.... -..+++ ..|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 34566777888888875331 111134577888888888 333110 111222 337777777777765
No 118
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=47.64 E-value=6.7 Score=40.44 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=14.4
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 76 ~~~~~~lg~G~~g~V~~~ 93 (353)
T PLN00034 76 LERVNRIGSGAGGTVYKV 93 (353)
T ss_pred HhhhhhccCCCCeEEEEE
Confidence 344567999999999985
No 119
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=46.51 E-value=7.5 Score=44.90 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-+..||+||||+||+|
T Consensus 699 ~~~I~~e~G~g~y~~vy~a 717 (974)
T KOG1166|consen 699 KFCISKEIGEGSYGSVYVA 717 (974)
T ss_pred eEEEEeeeccccceEEEEe
Confidence 3666778999999999986
No 120
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.98 E-value=13 Score=36.69 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhheeeeh
Q 005410 633 LAGVVFVVGVIWFYVKYR 650 (698)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~ 650 (698)
++++++++++++++|+||
T Consensus 266 liIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 121
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=42.44 E-value=12 Score=39.48 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.5
Q ss_pred HhCCCcCCeEecCCCceEEe
Q 005410 678 ADCLKEENLIGSGASGKSQE 697 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYk 697 (698)
.+.|.-=.+||+|+||.||-
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrL 159 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRL 159 (550)
T ss_pred cccchhheeeccccceeEEE
Confidence 34577778899999999994
No 122
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=41.42 E-value=13 Score=32.10 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.1
Q ss_pred hCCCcCCeEe
Q 005410 679 DCLKEENLIG 688 (698)
Q Consensus 679 ~~f~~~~~iG 688 (698)
+.|..+.=+|
T Consensus 112 ~~y~s~splg 121 (154)
T PF04478_consen 112 DKYESNSPLG 121 (154)
T ss_pred cccccCCCCC
Confidence 4444443333
No 123
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=40.87 E-value=11 Score=31.04 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=2.6
Q ss_pred cccCChh
Q 005410 582 SGELPPL 588 (698)
Q Consensus 582 ~~~~~~~ 588 (698)
++.||..
T Consensus 33 ~~~Cp~G 39 (129)
T PF12191_consen 33 TTPCPRG 39 (129)
T ss_dssp CSSS-SS
T ss_pred CCCCCCC
Confidence 3455543
No 124
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=39.20 E-value=13 Score=43.17 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.6
Q ss_pred CcCCeEecCCCceEEeC
Q 005410 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
...+.||+|.||.||+|
T Consensus 695 ~l~~~lG~G~FG~VY~g 711 (1025)
T KOG1095|consen 695 TLLRVLGKGAFGEVYEG 711 (1025)
T ss_pred EeeeeeccccccceEEE
Confidence 34678999999999997
No 125
>PHA03212 serine/threonine kinase US3; Provisional
Probab=39.04 E-value=13 Score=39.06 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||++
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~ 111 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFAC 111 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEE
Confidence 45777788999999999974
No 126
>PHA03211 serine/threonine kinase US3; Provisional
Probab=38.35 E-value=12 Score=40.19 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.4
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
+|.-...||+|+||.||+|
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a 188 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFES 188 (461)
T ss_pred CeEEEEEEccCCCeEEEEE
Confidence 4777788999999999985
No 127
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.65 E-value=19 Score=38.26 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=42.2
Q ss_pred cccCCceEEECCCCcceecc--cchhccCCCCCeEEcccC--ccccccchhhhc--cCCCCEEeCCCCcCcc
Q 005410 471 GLLSNLVEFSGDGNKFAGQI--PGSLAKLSQLGNLDLSEN--ELSGGIPEGIES--WKNINELNLANNRLSG 536 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~--l~~L~~L~L~~N~l~~ 536 (698)
.+.+.+..+.|++|++.... ...-...++|+.|+|++| .+.. ..++.. ...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 34567788889999875332 122344578999999999 4432 123322 3458899999999874
No 128
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.47 E-value=26 Score=19.88 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.8
Q ss_pred CCCCEEECCCC
Q 005410 114 RNLTDLNLGSN 124 (698)
Q Consensus 114 ~~L~~L~Ls~n 124 (698)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 129
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=33.64 E-value=15 Score=39.72 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=13.9
Q ss_pred cCCeEecCCCceEEeC
Q 005410 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
.+.+||+|-||-||+|
T Consensus 393 l~r~iG~GqFGdVy~g 408 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKG 408 (974)
T ss_pred HHHhhcCCcccceeee
Confidence 3567999999999997
No 130
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=33.50 E-value=6.2 Score=40.34 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=13.0
Q ss_pred CCeEecCCCceEEeC
Q 005410 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
=+.+|+|||..||||
T Consensus 468 LhLLGrGGFSEVyKA 482 (775)
T KOG1151|consen 468 LHLLGRGGFSEVYKA 482 (775)
T ss_pred HHHhccccHHHHHHh
Confidence 357999999999986
No 131
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.11 E-value=42 Score=27.14 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeeehh
Q 005410 625 WIFGLIFLLAGVVFVVGVIWFYVKYRK 651 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (698)
+++++++.+++++++.++++|...|.+
T Consensus 64 ili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 344444444444444444444444433
No 132
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.72 E-value=29 Score=44.73 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred EcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005410 504 DLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 504 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 536 (698)
||++|+|+.+.+..|..+.+|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999997777788889999999999998864
No 133
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=30.68 E-value=59 Score=32.65 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.6
Q ss_pred cEEeCC
Q 005410 549 NYLDLS 554 (698)
Q Consensus 549 ~~L~Ls 554 (698)
+.+.+.
T Consensus 231 q~i~lt 236 (306)
T PF01299_consen 231 QSINLT 236 (306)
T ss_pred CEEEec
Confidence 344443
No 134
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=27.89 E-value=49 Score=33.76 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.3
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
-..|.-.-.+-+|-||.||+|
T Consensus 283 r~Rv~l~~llqEGtFGri~~g 303 (563)
T KOG1024|consen 283 RCRVRLSCLLQEGTFGRIYRG 303 (563)
T ss_pred hhheechhhhhcCchhheeee
Confidence 344777778899999999997
No 135
>PF15050 SCIMP: SCIMP protein
Probab=27.49 E-value=44 Score=27.33 Aligned_cols=7 Identities=0% Similarity=-0.321 Sum_probs=2.8
Q ss_pred HHhhhee
Q 005410 641 GVIWFYV 647 (698)
Q Consensus 641 ~~~~~~~ 647 (698)
+++++++
T Consensus 26 IlyCvcR 32 (133)
T PF15050_consen 26 ILYCVCR 32 (133)
T ss_pred HHHHHHH
Confidence 3343343
No 136
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=27.40 E-value=61 Score=35.28 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=13.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhee
Q 005410 622 GSLWIFGLIFLLAGVVFVVGVIWFYV 647 (698)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (698)
..++++++++.++++++++++++|+.
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~L 293 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKL 293 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHH
Confidence 34555565555555555544444433
No 137
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=27.13 E-value=1.1e+02 Score=24.75 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEcccC-cCcccCChhhhhhcCCcccCCCCCCCC
Q 005410 574 LNLSNN-RLSGELPPLYAKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 574 L~ls~N-~l~~~~~~~~~~~~~~~~~~~n~~~c~ 606 (698)
+.+++| .+.|.|.. |...+-.||-.-|.
T Consensus 12 ~~~~~~t~l~ckc~~-----~n~s~~sg~~~~c~ 40 (150)
T PF06084_consen 12 TSKSENTHLTCKCSP-----WNPSSNSGNHSKCH 40 (150)
T ss_pred EeccCCeeEEEecCC-----CCCcccCCCCcchh
Confidence 345555 67777752 33444456666664
No 138
>PHA03207 serine/threonine kinase US3; Provisional
Probab=26.81 E-value=25 Score=36.83 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=15.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||++
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~ 111 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVC 111 (392)
T ss_pred ceEEEEeecCCCCeEEEEE
Confidence 4555677999999999974
No 139
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=26.50 E-value=18 Score=34.69 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=10.9
Q ss_pred eEecCCCceEEe
Q 005410 686 LIGSGASGKSQE 697 (698)
Q Consensus 686 ~iG~gg~g~VYk 697 (698)
.||.|.||+|+|
T Consensus 71 ~iG~G~fG~V~K 82 (361)
T KOG1006|consen 71 EIGNGAFGTVNK 82 (361)
T ss_pred HhcCCcchhhhh
Confidence 389999999997
No 140
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.40 E-value=53 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=9.9
Q ss_pred cchhhhHHHHHHHHHHH
Q 005410 623 SLWIFGLIFLLAGVVFV 639 (698)
Q Consensus 623 ~~~~~~~~~~~~~~~~~ 639 (698)
..+++++++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHH
Confidence 34556666666666653
No 141
>PTZ00046 rifin; Provisional
Probab=25.37 E-value=42 Score=33.87 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=4.8
Q ss_pred HHHHhhheeeeh
Q 005410 639 VVGVIWFYVKYR 650 (698)
Q Consensus 639 ~~~~~~~~~~~~ 650 (698)
+++++.+.|+||
T Consensus 331 MvIIYLILRYRR 342 (358)
T PTZ00046 331 MVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHhhh
Confidence 334444444333
No 142
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.16 E-value=43 Score=33.69 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=5.2
Q ss_pred HHHHHhhheeeeh
Q 005410 638 FVVGVIWFYVKYR 650 (698)
Q Consensus 638 ~~~~~~~~~~~~~ 650 (698)
++++++...|+||
T Consensus 325 IMvIIYLILRYRR 337 (353)
T TIGR01477 325 IMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHhhh
Confidence 3334444444333
No 143
>PHA03265 envelope glycoprotein D; Provisional
Probab=24.91 E-value=36 Score=33.76 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHHHHhhheeeehhccc
Q 005410 637 VFVVGVIWFYVKYRKLKK 654 (698)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~ 654 (698)
++.++++++++||+.+++
T Consensus 363 ~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 363 LVGVILYVCLRRKKELKK 380 (402)
T ss_pred hhhHHHHHHhhhhhhhhh
Confidence 333444555555444433
No 144
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=24.72 E-value=36 Score=36.23 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.8
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-..+||+|.|.+||+|
T Consensus 75 F~Fg~~lGeGSYStV~~A 92 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLA 92 (604)
T ss_pred cchhheeccccceeEEEe
Confidence 455567999999999985
No 145
>PHA03283 envelope glycoprotein E; Provisional
Probab=21.48 E-value=1.1e+02 Score=32.41 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhheee-ehhcccccc
Q 005410 629 LIFLLAGVVFVVGVIWFYVK-YRKLKKTKK 657 (698)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 657 (698)
++++.++++++.+.+|.+.+ |+.+++.++
T Consensus 405 ~~~~~~~~~~~~l~vw~c~~~r~~~~~~y~ 434 (542)
T PHA03283 405 AIICTCAALLVALVVWGCILYRRSNRKPYE 434 (542)
T ss_pred HHHHHHHHHHHHHhhhheeeehhhcCCccc
Confidence 33333334444344444444 333444443
No 146
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.09 E-value=44 Score=36.66 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.3
Q ss_pred hCCCcCCeEecCCCceEEe
Q 005410 679 DCLKEENLIGSGASGKSQE 697 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYk 697 (698)
++|.--.++|+|.||+||.
T Consensus 368 ~~F~~l~vLGkGsFGkV~l 386 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLL 386 (694)
T ss_pred cceEEEEEeccCcCceEEE
Confidence 3466667899999999995
Done!