Query 005410
Match_columns 698
No_of_seqs 623 out of 4937
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 00:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-79 1.7E-83 695.6 49.7 596 15-617 4-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-64 1E-68 573.8 38.7 517 66-586 126-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-60 6.1E-65 538.7 47.4 541 54-595 11-636 (680)
4 3t6q_A CD180 antigen; protein- 100.0 5E-59 1.7E-63 519.8 42.3 523 66-595 33-573 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 7.4E-57 2.5E-61 509.0 50.0 533 70-606 8-624 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-57 7.9E-62 506.4 43.7 519 66-596 32-572 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-57 1.2E-61 521.1 39.7 525 54-594 14-572 (844)
8 3t6q_A CD180 antigen; protein- 100.0 6.5E-56 2.2E-60 494.6 47.0 527 70-606 16-562 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-55 1.7E-59 487.6 36.9 486 66-563 56-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-54 5E-59 499.2 40.5 521 70-605 8-561 (844)
11 4eco_A Uncharacterized protein 100.0 9.3E-56 3.2E-60 492.2 22.2 506 17-562 24-603 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 2.1E-53 7.1E-58 471.4 40.2 495 90-593 28-543 (570)
13 4ecn_A Leucine-rich repeat pro 100.0 2.2E-53 7.5E-58 479.4 31.9 512 17-586 263-870 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 1.9E-50 6.5E-55 447.6 37.8 502 53-564 13-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-51 7.7E-56 452.5 29.6 493 53-594 3-523 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 6.7E-49 2.3E-53 441.5 42.3 519 67-595 53-593 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-49 1.9E-53 430.1 25.8 469 93-594 3-494 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-48 6.3E-53 429.3 29.9 489 43-563 4-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 3E-47 1E-51 416.3 29.5 456 69-563 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 3.3E-48 1.1E-52 431.5 21.0 464 90-585 81-603 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-45 2.4E-49 408.8 38.2 488 66-562 76-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-45 1.8E-49 401.7 28.4 466 89-590 30-518 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.7E-44 5.9E-49 407.1 29.0 357 221-588 435-846 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.9E-44 3.1E-48 391.9 29.8 455 69-563 34-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 8.3E-41 2.8E-45 359.2 29.7 387 166-594 14-421 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.9E-45 358.1 27.7 364 90-467 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.6E-39 8.8E-44 343.9 28.0 371 113-545 10-382 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 7.3E-39 2.5E-43 340.4 26.0 422 67-568 12-438 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-39 6.1E-44 328.8 17.4 291 20-317 3-302 (313)
30 2id5_A Lingo-1, leucine rich r 100.0 1E-37 3.5E-42 336.8 27.9 344 238-607 14-359 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-37 2.2E-41 325.7 28.4 362 105-590 33-395 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 9.1E-37 3.1E-41 324.6 29.2 358 83-540 35-392 (457)
33 1o6v_A Internalin A; bacterial 100.0 6.8E-36 2.3E-40 320.9 31.2 346 112-560 44-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 1.3E-35 4.5E-40 318.7 33.0 342 67-463 47-388 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 5.1E-36 1.7E-40 323.6 26.5 350 213-588 13-362 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 6.8E-35 2.3E-39 305.9 26.7 333 234-607 44-377 (390)
37 3oja_B Anopheles plasmodium-re 100.0 1.4E-34 4.8E-39 320.1 27.2 333 234-607 50-383 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 4.2E-34 1.4E-38 299.9 27.6 311 88-440 43-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 4E-33 1.4E-37 308.5 28.1 311 88-440 49-359 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-33 6.5E-38 284.6 20.3 250 330-582 50-304 (313)
41 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 280.9 29.2 307 86-463 40-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 4.9E-32 1.7E-36 279.7 28.7 306 183-559 41-346 (347)
43 4fcg_A Uncharacterized protein 100.0 7.4E-33 2.5E-37 281.8 14.7 274 16-296 20-314 (328)
44 1xku_A Decorin; proteoglycan, 100.0 1.2E-30 4.1E-35 266.9 28.0 266 307-579 53-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 8.1E-31 2.8E-35 268.4 25.0 286 284-579 34-330 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 8.7E-35 3E-39 312.9 -5.8 382 162-586 3-444 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-30 1.1E-34 264.0 27.8 288 91-437 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 7.2E-30 2.5E-34 261.2 29.0 245 91-393 32-278 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 8.9E-34 3E-38 305.0 -1.3 262 323-584 106-413 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.7E-35 269.1 16.6 282 310-594 35-327 (353)
51 3zyi_A Leucine-rich repeat-con 100.0 2.6E-29 8.9E-34 268.5 25.8 258 333-595 57-316 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 2.9E-29 1E-33 267.1 25.7 258 333-595 46-305 (440)
53 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.1E-34 256.6 20.8 259 309-593 10-272 (306)
54 3ogk_B Coronatine-insensitive 100.0 2.4E-32 8.3E-37 303.6 -2.6 136 425-560 377-527 (592)
55 2z66_A Variable lymphocyte rec 100.0 4.4E-29 1.5E-33 252.5 20.2 276 286-588 10-293 (306)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-28 6.4E-33 245.1 19.7 215 379-593 33-249 (285)
57 3ogk_B Coronatine-insensitive 100.0 3.4E-31 1.2E-35 294.4 -1.0 235 322-556 285-548 (592)
58 3zyi_A Leucine-rich repeat-con 100.0 4.7E-28 1.6E-32 258.8 23.1 240 54-296 61-303 (452)
59 2z80_A TOLL-like receptor 2, v 100.0 8.9E-29 3E-33 255.5 16.3 274 287-563 35-318 (353)
60 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4.1E-32 239.2 20.7 234 354-588 32-267 (285)
61 3zyj_A Leucine-rich repeat-con 100.0 2.4E-27 8.1E-32 252.4 24.1 249 308-561 45-294 (440)
62 4fcg_A Uncharacterized protein 100.0 1.4E-27 4.8E-32 242.9 20.3 225 330-559 81-314 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2E-28 6.8E-33 248.5 10.5 265 308-586 12-280 (317)
64 1wwl_A Monocyte differentiatio 99.9 1.2E-28 4.2E-33 249.4 5.1 245 307-583 44-310 (312)
65 3oja_A Leucine-rich immune mol 99.9 2.1E-27 7.2E-32 254.8 13.6 244 329-586 33-286 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 4.6E-26 1.6E-30 226.5 21.7 214 379-593 29-249 (276)
67 1wwl_A Monocyte differentiatio 99.9 5.2E-28 1.8E-32 244.8 6.6 250 279-560 39-310 (312)
68 2p1m_B Transport inhibitor res 99.9 3.3E-30 1.1E-34 286.6 -12.0 466 53-559 34-544 (594)
69 2p1m_B Transport inhibitor res 99.9 2.8E-29 9.6E-34 279.1 -4.9 380 161-560 104-520 (594)
70 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7.1E-30 220.7 23.4 218 52-274 3-220 (270)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-27 4.8E-32 242.2 7.3 263 288-564 15-281 (317)
72 3g06_A SSPH2 (leucine-rich rep 99.9 8E-26 2.7E-30 247.1 19.3 177 42-248 12-194 (622)
73 2o6q_A Variable lymphocyte rec 99.9 5E-25 1.7E-29 218.0 21.2 205 380-587 18-223 (270)
74 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7E-29 236.0 26.2 147 402-569 161-307 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.8E-29 216.5 21.6 209 90-299 28-240 (276)
76 3oja_A Leucine-rich immune mol 99.9 6.2E-26 2.1E-30 243.4 12.4 225 352-590 32-258 (487)
77 1p9a_G Platelet glycoprotein I 99.9 9E-25 3.1E-29 217.8 19.7 212 376-594 8-220 (290)
78 1p9a_G Platelet glycoprotein I 99.9 5.7E-23 1.9E-27 204.8 20.0 203 352-561 8-210 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.9E-23 6.5E-28 206.7 16.4 183 398-588 59-241 (272)
80 3m19_A Variable lymphocyte rec 99.9 9.6E-23 3.3E-27 199.2 19.5 191 52-249 3-193 (251)
81 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.8E-27 201.2 20.1 205 88-304 39-243 (272)
82 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 198.6 17.9 188 404-594 16-205 (251)
83 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 226.9 3.8 246 321-586 23-320 (386)
84 3goz_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 223.3 4.7 129 311-439 3-151 (362)
85 3goz_A Leucine-rich repeat-con 99.9 3.4E-24 1.2E-28 221.6 6.3 255 334-588 2-303 (362)
86 2ca6_A RAN GTPase-activating p 99.9 2E-24 6.9E-29 225.8 3.8 227 346-589 24-298 (386)
87 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.1E-28 215.8 9.5 249 332-588 49-312 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 3.6E-22 1.2E-26 193.6 17.5 196 355-556 32-236 (239)
89 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.9E-27 196.5 14.5 204 369-580 25-237 (239)
90 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.8E-28 215.3 6.7 253 308-568 49-315 (336)
91 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.9E-27 205.4 12.4 199 355-559 92-307 (310)
92 4glp_A Monocyte differentiatio 99.9 2E-22 6.9E-27 203.6 12.7 225 307-536 65-308 (310)
93 1h6u_A Internalin H; cell adhe 99.9 5.8E-22 2E-26 199.6 14.4 193 328-560 39-231 (308)
94 4ay9_X Follicle-stimulating ho 99.9 3E-21 1E-25 198.4 16.4 204 304-511 7-215 (350)
95 2o6s_A Variable lymphocyte rec 99.9 2.5E-21 8.6E-26 183.3 14.1 186 52-260 5-190 (208)
96 1h6u_A Internalin H; cell adhe 99.9 1.5E-20 5.3E-25 189.2 19.7 189 67-272 42-230 (308)
97 2v9t_B SLIT homolog 2 protein 99.8 1.7E-20 5.9E-25 178.6 15.2 162 430-594 15-177 (220)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-20 1E-24 177.0 15.8 162 430-594 15-178 (220)
99 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.7E-24 186.8 19.2 242 333-583 12-259 (350)
100 3cvr_A Invasion plasmid antige 99.8 4.2E-20 1.5E-24 199.3 15.5 198 55-283 49-254 (571)
101 2xot_A Amphoterin-induced prot 99.8 3.8E-20 1.3E-24 190.9 14.3 182 405-589 21-209 (361)
102 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 168.4 18.0 180 93-283 10-189 (208)
103 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.3E-24 194.3 16.2 187 331-569 60-253 (571)
104 3e6j_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 170.9 14.9 143 450-593 40-184 (229)
105 3e6j_A Variable lymphocyte rec 99.8 5.7E-19 1.9E-23 169.4 15.8 158 52-226 17-174 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.8E-23 164.8 15.8 156 405-563 14-170 (220)
107 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.8E-23 172.6 15.8 172 87-273 43-214 (291)
108 2v9t_B SLIT homolog 2 protein 99.8 2E-18 6.9E-23 164.3 15.4 154 405-561 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.5E-23 172.7 14.6 149 400-560 66-214 (291)
110 1m9s_A Internalin B; cell inva 99.8 4.3E-18 1.5E-22 185.9 18.7 174 86-274 39-212 (605)
111 2xot_A Amphoterin-induced prot 99.8 3.1E-18 1.1E-22 176.6 15.4 174 70-248 22-202 (361)
112 1w8a_A SLIT protein; signaling 99.8 1.6E-18 5.5E-23 161.2 11.7 153 453-608 11-166 (192)
113 1m9s_A Internalin B; cell inva 99.8 5.2E-18 1.8E-22 185.2 15.5 189 332-536 23-211 (605)
114 4ezg_A Putative uncharacterize 99.7 1.5E-17 5E-22 155.6 12.8 153 399-559 41-194 (197)
115 2wfh_A SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 154.1 13.0 140 453-596 13-153 (193)
116 1xeu_A Internalin C; cellular 99.7 8.6E-18 3E-22 164.6 11.4 167 68-250 21-187 (263)
117 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.9E-22 156.3 11.6 153 87-248 41-194 (197)
118 4b8c_D Glucose-repressible alc 99.7 5.2E-19 1.8E-23 198.3 2.2 218 23-254 132-360 (727)
119 3sb4_A Hypothetical leucine ri 99.7 9.4E-18 3.2E-22 170.8 11.0 221 329-552 100-327 (329)
120 3sb4_A Hypothetical leucine ri 99.7 4.2E-18 1.5E-22 173.3 7.7 216 210-431 100-326 (329)
121 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 163.3 10.5 168 379-561 20-187 (263)
122 4fs7_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 159.3 23.1 335 78-479 59-393 (394)
123 1dce_A Protein (RAB geranylger 99.7 4.4E-19 1.5E-23 192.6 -3.6 106 476-586 443-550 (567)
124 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4E-21 148.6 12.4 138 451-588 30-168 (192)
125 4fs7_A Uncharacterized protein 99.7 2.5E-15 8.4E-20 157.0 23.7 335 102-503 59-393 (394)
126 4fdw_A Leucine rich hypothetic 99.7 1.8E-15 6.2E-20 156.9 22.0 240 331-581 136-382 (401)
127 4fdw_A Leucine rich hypothetic 99.7 1.6E-15 5.5E-20 157.3 21.3 265 283-559 113-383 (401)
128 1dce_A Protein (RAB geranylger 99.7 8.9E-19 3.1E-23 190.2 -4.7 186 234-441 348-548 (567)
129 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 143.5 12.2 139 452-593 9-149 (177)
130 4b8c_D Glucose-repressible alc 99.7 6.6E-17 2.3E-21 181.3 7.8 187 90-302 173-360 (727)
131 2ell_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 140.5 10.0 131 427-559 25-160 (168)
132 2ell_A Acidic leucine-rich nuc 99.6 7.6E-16 2.6E-20 139.9 10.6 113 134-248 45-160 (168)
133 2je0_A Acidic leucine-rich nuc 99.6 6.5E-16 2.2E-20 137.3 7.8 127 66-194 17-148 (149)
134 2je0_A Acidic leucine-rich nuc 99.6 7.8E-16 2.7E-20 136.8 7.7 84 90-175 17-101 (149)
135 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 135.0 14.7 126 70-199 14-139 (193)
136 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 7.7E-19 131.4 15.5 133 52-199 5-137 (177)
137 3g39_A Variable lymphocyte rec 99.6 9.9E-15 3.4E-19 132.4 10.8 115 476-593 11-127 (170)
138 4gt6_A Cell surface protein; l 99.6 5.3E-13 1.8E-17 139.2 25.1 112 82-196 55-170 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5E-19 132.4 9.9 87 494-582 60-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5E-19 132.4 9.0 135 421-560 14-154 (176)
141 2r9u_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 129.0 11.0 114 477-593 15-130 (174)
142 4gt6_A Cell surface protein; l 99.5 1.4E-12 4.6E-17 136.1 23.9 158 102-266 51-212 (394)
143 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.2E-20 146.4 -4.7 115 445-564 43-158 (198)
144 1ds9_A Outer arm dynein; leuci 99.5 4.5E-16 1.6E-20 145.6 -4.4 155 398-559 14-185 (198)
145 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 123.1 11.0 109 452-563 11-119 (170)
146 2ifg_A High affinity nerve gro 99.4 2.4E-13 8.1E-18 139.5 10.2 128 478-607 12-144 (347)
147 2r9u_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 121.2 11.1 107 453-562 15-121 (174)
148 3un9_A NLR family member X1; l 99.3 8.8E-14 3E-18 142.8 -0.9 165 402-566 72-259 (372)
149 3un9_A NLR family member X1; l 99.3 6.7E-13 2.3E-17 136.2 2.3 160 425-584 71-254 (372)
150 4h09_A Hypothetical leucine ri 99.3 9.2E-10 3.2E-14 114.1 26.2 83 109-196 41-123 (379)
151 4h09_A Hypothetical leucine ri 99.3 9.3E-10 3.2E-14 114.1 24.7 146 396-546 211-356 (379)
152 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.9E-16 126.9 9.9 105 454-561 12-118 (347)
153 2ra8_A Uncharacterized protein 98.9 7.3E-10 2.5E-14 112.5 4.7 85 496-580 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 2E-09 6.9E-14 109.3 5.4 156 397-557 167-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 8E-13 91.4 2.9 65 494-558 89-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7.4E-09 2.5E-13 94.8 -0.9 116 83-198 29-163 (185)
157 3rw6_A Nuclear RNA export fact 98.4 9.3E-08 3.2E-12 91.7 3.0 40 496-535 168-209 (267)
158 3rw6_A Nuclear RNA export fact 98.4 8.6E-08 2.9E-12 91.9 2.2 80 471-552 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.2E-11 77.0 2.3 84 474-557 61-150 (176)
160 3rfe_A Platelet glycoprotein I 98.0 1.1E-05 3.6E-10 68.4 6.8 69 525-595 11-81 (130)
161 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.5E-11 76.8 1.3 34 91-124 62-95 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.8E-09 65.1 4.3 64 493-556 65-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00011 3.9E-09 66.2 2.7 112 448-559 39-170 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.2E-08 55.0 5.8 57 502-560 12-69 (130)
165 2ks1_B Epidermal growth factor 93.0 0.098 3.4E-06 33.4 3.4 25 625-649 13-37 (44)
166 4aw2_A Serine/threonine-protei 87.0 0.053 1.8E-06 56.4 -2.7 29 670-698 64-93 (437)
167 4aoj_A High affinity nerve gro 86.0 0.15 5.1E-06 50.6 0.1 15 684-698 46-60 (329)
168 2l2t_A Receptor tyrosine-prote 86.0 0.44 1.5E-05 30.3 2.2 22 625-646 12-33 (44)
169 2lz0_A Uncharacterized protein 82.9 2.9 9.9E-05 32.7 6.3 45 78-123 8-52 (100)
170 4ase_A Vascular endothelial gr 82.0 0.28 9.6E-06 49.1 0.1 20 679-698 64-83 (353)
171 2lz0_A Uncharacterized protein 77.7 5.5 0.00019 31.0 6.3 47 101-148 7-53 (100)
172 4g3f_A NF-kappa-beta-inducing 77.2 0.39 1.3E-05 47.5 -0.6 20 679-698 58-77 (336)
173 2qol_A Ephrin receptor; recept 76.1 1 3.5E-05 45.5 2.1 20 679-698 45-64 (373)
174 3dzo_A Rhoptry kinase domain; 76.1 0.39 1.3E-05 49.4 -1.1 23 676-698 75-97 (413)
175 4fih_A Serine/threonine-protei 75.5 0.65 2.2E-05 46.1 0.4 18 681-698 76-93 (346)
176 4b99_A Mitogen-activated prote 72.8 0.79 2.7E-05 46.7 0.2 18 681-698 56-73 (398)
177 4fie_A Serine/threonine-protei 72.4 0.85 2.9E-05 46.6 0.4 19 680-698 152-170 (423)
178 3p1a_A MYT1 kinase, membrane-a 72.2 0.59 2E-05 45.8 -0.9 21 678-698 56-76 (311)
179 3e7e_A HBUB1, BUB1A, mitotic c 71.9 0.68 2.3E-05 46.6 -0.5 23 676-698 62-84 (365)
180 2vd5_A DMPK protein; serine/th 71.9 0.57 2E-05 48.1 -1.0 29 670-698 51-80 (412)
181 3v8s_A RHO-associated protein 69.6 0.74 2.5E-05 47.2 -0.8 27 672-698 61-88 (410)
182 3v5w_A G-protein coupled recep 66.6 1.2 4.1E-05 48.3 0.1 20 679-698 189-208 (689)
183 2w4o_A Calcium/calmodulin-depe 65.4 1.3 4.4E-05 44.2 -0.0 22 677-698 51-72 (349)
184 3kul_A Ephrin type-A receptor 65.1 1.4 4.7E-05 43.5 0.1 18 681-698 51-68 (325)
185 2psq_A Fibroblast growth facto 64.3 1.5 5.1E-05 44.2 0.2 19 680-698 82-100 (370)
186 1u5q_A Serine/threonine protei 63.5 1.4 4.9E-05 43.8 -0.1 21 678-698 53-73 (348)
187 1mqb_A Ephrin type-A receptor 63.1 1.7 5.7E-05 43.0 0.3 17 682-698 47-63 (333)
188 3l9p_A Anaplastic lymphoma kin 63.0 1.4 4.9E-05 44.2 -0.2 20 679-698 71-90 (367)
189 2i1m_A Macrophage colony-stimu 62.3 1.7 5.7E-05 42.9 0.1 22 677-698 44-65 (333)
190 3c1x_A Hepatocyte growth facto 62.3 1.7 5.9E-05 43.7 0.3 17 682-698 92-108 (373)
191 1luf_A Muscle-specific tyrosin 62.2 1.9 6.6E-05 42.6 0.6 22 677-698 45-66 (343)
192 3i6u_A CDS1, serine/threonine- 62.1 2.1 7E-05 44.0 0.8 23 676-698 132-154 (419)
193 2vx3_A Dual specificity tyrosi 62.0 1.4 4.9E-05 44.5 -0.4 23 676-698 51-73 (382)
194 1vzo_A Ribosomal protein S6 ki 61.7 1.7 5.9E-05 43.4 0.1 20 679-698 54-73 (355)
195 3tt0_A Basic fibroblast growth 59.0 2.1 7E-05 43.3 0.1 19 680-698 70-88 (382)
196 3an0_A Dual specificity mitoge 59.0 2 6.9E-05 42.5 0.0 20 679-698 51-70 (340)
197 2zmd_A Dual specificity protei 57.8 2 6.8E-05 43.6 -0.2 19 680-698 57-75 (390)
198 1rjb_A FL cytokine receptor; k 57.8 2.2 7.6E-05 42.2 0.1 21 678-698 44-64 (344)
199 4dc2_A Protein kinase C IOTA t 57.8 2.2 7.4E-05 43.4 0.1 20 679-698 52-71 (396)
200 3a99_A Proto-oncogene serine/t 57.5 2.1 7.1E-05 42.0 -0.2 18 681-698 45-62 (320)
201 3kvw_A DYRK2, dual specificity 57.4 2.2 7.4E-05 44.0 -0.0 19 680-698 98-116 (429)
202 1qcf_A Haematopoetic cell kina 57.3 2.4 8.2E-05 44.1 0.3 19 680-698 189-207 (454)
203 1j1b_A Glycogen synthase kinas 57.2 2.2 7.5E-05 43.8 -0.1 18 681-698 56-73 (420)
204 4exu_A Mitogen-activated prote 55.5 2.5 8.7E-05 42.4 0.1 18 681-698 44-61 (371)
205 3byv_A Rhoptry kinase; malaria 55.1 1.8 6.2E-05 43.6 -1.1 21 678-698 72-92 (377)
206 2c30_A Serine/threonine-protei 54.8 2.2 7.4E-05 41.9 -0.5 18 681-698 47-64 (321)
207 3q60_A ROP5B; pseudokinase, tr 54.5 2.1 7.3E-05 43.0 -0.7 21 678-698 61-81 (371)
208 3cbl_A C-FES, proto-oncogene t 53.6 2.4 8.3E-05 42.7 -0.4 19 680-698 115-133 (377)
209 1rdq_E PKA C-alpha, CAMP-depen 53.1 3 0.0001 41.5 0.2 18 681-698 43-60 (350)
210 3rp9_A Mitogen-activated prote 52.2 3 0.0001 43.3 0.0 20 679-698 53-72 (458)
211 4ejn_A RAC-alpha serine/threon 52.1 2.7 9.1E-05 43.6 -0.4 20 679-698 148-167 (446)
212 2x4f_A Myosin light chain kina 51.9 2.3 8E-05 42.8 -0.8 17 682-698 92-108 (373)
213 1kob_A Twitchin; kinase, intra 51.8 2.9 9.8E-05 42.4 -0.2 20 679-698 51-70 (387)
214 1fmk_A C-SRC, P60-SRC, tyrosin 51.8 3.3 0.00011 43.0 0.2 18 681-698 186-203 (452)
215 1zth_A RIO1 serine protein kin 51.5 4.5 0.00015 38.1 1.1 16 683-698 51-66 (258)
216 3c4z_A Rhodopsin kinase; Ser/T 51.3 3.4 0.00012 43.9 0.2 20 679-698 185-204 (543)
217 2jii_A Serine/threonine-protei 51.1 2.5 8.7E-05 42.0 -0.7 18 681-698 44-61 (352)
218 2owb_A Serine/threonine-protei 51.1 2.5 8.5E-05 41.7 -0.8 17 682-698 44-60 (335)
219 3uto_A Twitchin; kinase, muscl 51.0 2.9 0.0001 44.8 -0.3 19 680-698 158-176 (573)
220 3en9_A Glycoprotease, O-sialog 50.6 6.5 0.00022 41.8 2.3 20 679-698 336-355 (540)
221 2acx_A G protein-coupled recep 50.5 3 0.0001 44.6 -0.3 20 679-698 184-203 (576)
222 4fl3_A Tyrosine-protein kinase 50.4 3.8 0.00013 44.6 0.5 15 684-698 374-388 (635)
223 3ttj_A Mitogen-activated prote 50.3 3.6 0.00012 42.8 0.3 20 679-698 62-81 (464)
224 1zar_A RIO2 kinase; serine kin 50.1 3.5 0.00012 39.5 0.1 22 677-698 88-109 (282)
225 2y7j_A Phosphorylase B kinase 50.0 3.8 0.00013 41.0 0.3 23 676-698 91-113 (365)
226 1k9a_A Carboxyl-terminal SRC k 49.5 3.5 0.00012 42.7 0.1 19 680-698 194-212 (450)
227 1b6c_B TGF-B superfamily recep 48.3 3.7 0.00013 40.5 -0.1 22 677-698 40-61 (342)
228 1opk_A P150, C-ABL, proto-onco 46.9 3.3 0.00011 43.6 -0.7 18 681-698 222-239 (495)
229 2j0j_A Focal adhesion kinase 1 45.7 4.7 0.00016 44.1 0.3 20 679-698 390-409 (656)
230 2h8h_A Proto-oncogene tyrosine 45.6 4.4 0.00015 43.0 0.1 18 681-698 269-286 (535)
231 3pfq_A PKC-B, PKC-beta, protei 45.2 4.1 0.00014 44.7 -0.3 20 679-698 341-360 (674)
232 2w1i_A JAK2; chromosomal rearr 44.3 5 0.00017 39.3 0.2 16 683-698 45-60 (326)
233 2ozo_A Tyrosine-protein kinase 44.2 7 0.00024 42.3 1.3 13 686-698 343-355 (613)
234 1nxk_A MAP kinase-activated pr 43.7 6 0.00021 40.1 0.7 14 685-698 68-81 (400)
235 4gyi_A RIO2 kinase; protein ki 36.7 11 0.00036 38.0 1.1 18 681-698 97-114 (397)
236 2pzi_A Probable serine/threoni 35.6 7 0.00024 43.0 -0.4 19 680-698 81-99 (681)
237 1zza_A Stannin, AG8_1; helix, 33.2 29 0.001 24.3 2.5 8 640-647 31-38 (90)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-79 Score=695.59 Aligned_cols=596 Identities=34% Similarity=0.511 Sum_probs=475.4
Q ss_pred CcccCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcC---CC--------
Q 005410 15 PLLTQSLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGP---FP-------- 83 (698)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~---~~-------- 83 (698)
++++++.++|++||++||+++.||. .+.+|+... +||.|.||+|+ .++|++|+|+++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~--~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNK--NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTS--CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCC--CCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 3445668889999999999999888 899998554 89999999998 58999999999988875 32
Q ss_pred ---------------ccccCCCCCCEEECCCCCCcccCCc--CCcCCCCCCEEECCCCCCcccCcccc-CCCCCCCEEEC
Q 005410 84 ---------------IFFCRLPYLAQLSLYNNYINSSLPL--DISTCRNLTDLNLGSNLLVGAIPATL-SQLKNLKSLEL 145 (698)
Q Consensus 84 ---------------~~~~~l~~L~~L~Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L 145 (698)
..|.++++|++|+|++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 5678889999999999998887777 78888888888888887776666544 55556666666
Q ss_pred CCCcCcccCCcC-------------------------ccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCC
Q 005410 146 QENNFTGDIPAS-------------------------FGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQP 200 (698)
Q Consensus 146 ~~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 200 (698)
++|.+++..+.. +..+++|++|++++|.+++.+|. ++++++|++|++++|.++
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~- 236 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS- 236 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-
Confidence 555554433221 24566777777777777766665 777777777777777776
Q ss_pred CCCcccccCCCCCCEEEcccCCCCCcC----------------------CccccCC-CCCCEEEccCCCCcccCCccccC
Q 005410 201 GQLPSQLSNLTNLEYLWLSGCNLLGEI----------------------PESLTRL-TKLKNLDLSFNGLTGSIPSSITE 257 (698)
Q Consensus 201 ~~~~~~l~~l~~L~~L~l~~n~l~~~~----------------------~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~ 257 (698)
+.+|..+.++++|++|++++|.+.+.. |..+... ++|++|++++|.+++..|..+..
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 556666666666666666666665444 3333332 55555555555555555555555
Q ss_pred CCCCceeeccCCcceeccCcc-ccccccccccccCCCccccccCCccccc--cccEEEccCccccccCChhccC--CCCC
Q 005410 258 MKSIEQIELFKNSLSGELPVK-WVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENRLEGTLPESIAR--SKNL 332 (698)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~--~~~L 332 (698)
+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|..+... +|++|++++|.+.+.+|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 555666666666555555544 5556666666666666665555555444 5666666666666666665554 6778
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCc
Q 005410 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHN 412 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 412 (698)
++|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 88888888888888888999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccc
Q 005410 413 LLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPG 492 (698)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 492 (698)
.+++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred hh----------------------------------------------------------------------ccCCCCCe
Q 005410 493 SL----------------------------------------------------------------------AKLSQLGN 502 (698)
Q Consensus 493 ~~----------------------------------------------------------------------~~l~~L~~ 502 (698)
.+ ..+++|++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 43 33578999
Q ss_pred EEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcC
Q 005410 503 LDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRL 581 (698)
Q Consensus 503 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l 581 (698)
|||++|++++.+|..++++++|++|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..++ |++|++++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cccCChh-hhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 005410 582 SGELPPL-YAKEMYRGSFLGNPGLCGDLAGLCPKTGR 617 (698)
Q Consensus 582 ~~~~~~~-~~~~~~~~~~~~n~~~c~~~~~~c~~~~~ 617 (698)
+|.+|.. .+.++....|.|||++||.+...|+...+
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence 9999977 78888889999999999998778986543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-64 Score=573.81 Aligned_cols=517 Identities=32% Similarity=0.508 Sum_probs=431.6
Q ss_pred CcEEEEECCCCCCCcCCCccc-cCCCCCCEEECCCCCCcccCCcC---CcCCCCCCEEECCCCCCcccCccccCCCCCCC
Q 005410 66 QRVTSVNLSQSQLSGPFPIFF-CRLPYLAQLSLYNNYINSSLPLD---ISTCRNLTDLNLGSNLLVGAIPATLSQLKNLK 141 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 141 (698)
.++++|++++|.+.+..+..+ .++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~ 203 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLE 203 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCC
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCC
Confidence 468888888888887776655 77788888888888777766554 55555555555555555443332 4444555
Q ss_pred EEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccC----------------------cCCCcEeeccCCCCC
Q 005410 142 SLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGN----------------------ISTLKELRLAYNPFQ 199 (698)
Q Consensus 142 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~~~ 199 (698)
+|++++|.+.+.+|. ++++++|++|++++|.+++..|..+.+ +++|++|++++|.++
T Consensus 204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282 (768)
T ss_dssp EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE
T ss_pred EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC
Confidence 555555544444443 444444555555544444444444444 455555555555554
Q ss_pred CCCCcccccCC-CCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCcc-ccCCCCCceeeccCCcceeccCc
Q 005410 200 PGQLPSQLSNL-TNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSS-ITEMKSIEQIELFKNSLSGELPV 277 (698)
Q Consensus 200 ~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 277 (698)
+.+|..+... ++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|.
T Consensus 283 -~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 283 -GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp -ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred -CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 4567777664 99999999999999999999999999999999999999888866 89999999999999999999999
Q ss_pred cccccc-cccccccCCCccccccCCcccc--c-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCC
Q 005410 278 KWVNMT-TLLRFDASMNQLTGTIPNELCE--L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKY 353 (698)
Q Consensus 278 ~~~~~~-~L~~L~l~~n~l~~~~~~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 353 (698)
.+..++ +|+.|++++|.+++.+|..+.. . +|++|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence 999987 9999999999999988888776 3 79999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEc
Q 005410 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFEL 433 (698)
Q Consensus 354 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 433 (698)
++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.++..+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccchhhhcCCCCCeeeccCccceeecCccc-------------------------------------------
Q 005410 434 ADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEV------------------------------------------- 470 (698)
Q Consensus 434 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------------- 470 (698)
++|++.+.+|..+..+++|+.|++++|++++.+|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999987777543
Q ss_pred ---------------------------cccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCC
Q 005410 471 ---------------------------GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN 523 (698)
Q Consensus 471 ---------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 523 (698)
..+++|+.|++++|++++.+|..++.+++|++|+|++|++++.+|+.++++++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 33567999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccCC
Q 005410 524 INELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELP 586 (698)
Q Consensus 524 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~ 586 (698)
|++|||++|+++|.+|..++.+++|++||+++|+++|.+|..-...++....+.+|+--|..|
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 999999999999999999999999999999999999999976433236666777887655433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-60 Score=538.68 Aligned_cols=541 Identities=23% Similarity=0.203 Sum_probs=394.5
Q ss_pred CcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 54 CHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 54 C~~~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
|++.+++..+ .+.++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..+
T Consensus 11 cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 11 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 4444444333 34689999999999999888899999999999999999999999999999999999999999997777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCccccc--C
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLS--N 209 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~--~ 209 (698)
..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+++..+..+.++++|++|++++|.++ ...+..+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccc
Confidence 78999999999999999999887788999999999999999999888888999999999999999887 33344333 5
Q ss_pred CCCCCEEEcccCCCCCcCCccccCC---------------------------CCCCEEEccCCCCcccCCccccCCCC--
Q 005410 210 LTNLEYLWLSGCNLLGEIPESLTRL---------------------------TKLKNLDLSFNGLTGSIPSSITEMKS-- 260 (698)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~-- 260 (698)
+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 5788888888888887766655433 45566666666666666666665543
Q ss_pred CceeeccCCcceeccCccccccccccccccCCCccccccCCccccc-cccEEEccCccccc-----cCCh----hccCCC
Q 005410 261 IEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEG-----TLPE----SIARSK 330 (698)
Q Consensus 261 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~-----~~~~----~~~~~~ 330 (698)
|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+ +|+.|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 7777777777766666666677777777777777666655555444 45555555443221 1111 344445
Q ss_pred CCCEEEccCCcCCcCCCccccCCC----------------------------CCCEEEcccCccceecCcccCCCCCCCE
Q 005410 331 NLSELKLFNNKLRGGLPSELGKYS----------------------------PLTTLDLSYNQFSGEIPEGLCEKGSLED 382 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~----------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 382 (698)
+|++|++++|++++..+..+..++ +|+.|++++|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 555555555555544444444444 4555555556666666666777777777
Q ss_pred EeccCCcCcccCC-ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccc--cccchhhhcCCCCCeeeccC
Q 005410 383 LVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFT--GKISKSISGANNLSSLLVSR 459 (698)
Q Consensus 383 L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~ 459 (698)
|++++|.+.+.+| ..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 7777777765544 56677777777777777777666777777777777777777765 45667777778888888888
Q ss_pred ccceeecCccccccCCceEEECCCCcceeccc--------chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 460 NNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP--------GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
|++++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++|+++...+..|.++++|++|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 88876666777778888888888887765422 2367778888888888888755555678888888888888
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCccccc-ccc-cCeEEcccCcCcccCCh-hhhhhcCC
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ-NLR-LNVLNLSNNRLSGELPP-LYAKEMYR 595 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~-L~~L~ls~N~l~~~~~~-~~~~~~~~ 595 (698)
|++++..+..|.++++|+.|+|++|++++..|..+. .++ |+.+++++|+|.|.|+. .|+..|..
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 888866666677888888888888888877777665 444 88888888888888875 56666643
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-59 Score=519.80 Aligned_cols=523 Identities=22% Similarity=0.203 Sum_probs=392.0
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
..+++|++++|.+++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 35556666666665555555666666666666666555555555666666666666666655555555666666666666
Q ss_pred CCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCC--EEEcccCCC
Q 005410 146 QENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLE--YLWLSGCNL 223 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~--~L~l~~n~l 223 (698)
++|.+++..+..|.++++|++|++++|.+++.....+..+++|++|++++|.++ ...+..++.+++|+ +|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCcc
Confidence 666655544555555566666666666555433333333555666666665555 23344455555555 555555555
Q ss_pred CCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc-----eeccCccccccc--cccccccCCCccc
Q 005410 224 LGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL-----SGELPVKWVNMT--TLLRFDASMNQLT 296 (698)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~~--~L~~L~l~~n~l~ 296 (698)
.+..+..+.. ..|+.|++++|. ..+..+..+..+....+....+ ....+..+..+. +++.+++++|.++
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 5544444332 455555555554 1222222222222222111111 111122233332 7899999999999
Q ss_pred cccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCc-cc
Q 005410 297 GTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPE-GL 374 (698)
Q Consensus 297 ~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~ 374 (698)
+..+..+..+ +|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 8777777777 8999999999998 7888899999999999999999988888999999999999999999866655 48
Q ss_pred CCCCCCCEEeccCCcCcccC--CccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccch-hhhcCCC
Q 005410 375 CEKGSLEDLVLIYNSFSGKI--PQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISK-SISGANN 451 (698)
Q Consensus 375 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ 451 (698)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 89999999999999998775 77899999999999999999999999999999999999999999877654 4889999
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCcceec---ccchhccCCCCCeEEcccCccccccchhhhccCCCCEEe
Q 005410 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQ---IPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELN 528 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 528 (698)
|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 99999999999988899999999999999999999863 336789999999999999999999999999999999999
Q ss_pred CCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC
Q 005410 529 LANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 529 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|++|++++..|..+..++.| +|++++|.+++..|..+..++ |+.+++++|++.|.|+..|+..|..
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYK 573 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHH
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHH
Confidence 99999999999999999999 999999999999999888887 9999999999999999876665543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.4e-57 Score=509.05 Aligned_cols=533 Identities=22% Similarity=0.219 Sum_probs=430.0
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005410 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.++.++++++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 46667777764 444443 789999999999999888899999999999999999999999999999999999999999
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCc
Q 005410 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE 229 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 229 (698)
+++..+.+|+++++|++|++++|.+++..+..|+++++|++|++++|.++ ...+..++++++|++|++++|.+++..+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHH
Confidence 99776678999999999999999999888889999999999999999998 56677889999999999999999987776
Q ss_pred ccc--CCCCCCEEEccCCCCcccCCccccCC---------------------------CCCceeeccCCcceeccCcccc
Q 005410 230 SLT--RLTKLKNLDLSFNGLTGSIPSSITEM---------------------------KSIEQIELFKNSLSGELPVKWV 280 (698)
Q Consensus 230 ~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~ 280 (698)
.+. .+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 654 56899999999999998877766654 4577788888888888888888
Q ss_pred cccc--ccccccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCc-----CCC----c
Q 005410 281 NMTT--LLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRG-----GLP----S 348 (698)
Q Consensus 281 ~~~~--L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~ 348 (698)
.++. |+.|++++|.+++..+..+..+ +|++|++++|.+.+..|..+..+++|+.|++++|...+ .+| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 7765 9999999999988777777776 89999999999998888889999999999998875543 222 2
Q ss_pred cccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCc----------------------------CcccCCccccC
Q 005410 349 ELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS----------------------------FSGKIPQSLGK 400 (698)
Q Consensus 349 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~----------------------------l~~~~~~~~~~ 400 (698)
.+..+++|++|++++|.+.+..+..|..+++|++|++++|. +.+..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 67788999999999999998888778887777777776654 33444455556
Q ss_pred CCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce--eecCccccccCCce
Q 005410 401 CRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS--GSIPDEVGLLSNLV 477 (698)
Q Consensus 401 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~ 477 (698)
+++|++|++++|.+++.++ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 6666666666666654333 45666666666666666666555666666666666666666654 35677788888899
Q ss_pred EEECCCCcceecccchhccCCCCCeEEcccCccccccc--------hhhhccCCCCEEeCCCCcCcccCCcccCCCCCCc
Q 005410 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIP--------EGIESWKNINELNLANNRLSGEIPSEIGNLPVLN 549 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 549 (698)
.|++++|.+++..+..+..+++|++|++++|++++..+ ..+.++++|++|+|++|+++...+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 99999998888777888889999999999998886532 2367889999999999999955455789999999
Q ss_pred EEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhh---hhhcCCcccCCCCCCCC
Q 005410 550 YLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLY---AKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 550 ~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~---~~~~~~~~~~~n~~~c~ 606 (698)
.|+|++|++++..+..|..++ |+.|++++|++++..|..+ +.......+.+||+.|.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999999988877788877 9999999999998766542 23344556789999985
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-57 Score=506.35 Aligned_cols=519 Identities=20% Similarity=0.181 Sum_probs=387.9
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
.++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45666666666666665556666666666666666666666666666666666666666666555666666666666666
Q ss_pred CCCcCcccCCcCccCCCCccEEEccCcccCC-cccccccCcCCCcEeeccCCCCCCCCCcccccCCCCC----CEEEccc
Q 005410 146 QENNFTGDIPASFGEFTQLESLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL----EYLWLSG 220 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L----~~L~l~~ 220 (698)
++|.+.+..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|.++ ...+..++.+++| .+|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC-EECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce-ecChhhhhhhhccccccceeeccC
Confidence 6666665555556666666666666666654 34556666666666666666655 2233334433333 3566666
Q ss_pred CCCCCcCCccccCCCCCCEEEccCCCCc-ccCCccccCCCCCceeeccCCcceec------cCccccccc--ccccccc-
Q 005410 221 CNLLGEIPESLTRLTKLKNLDLSFNGLT-GSIPSSITEMKSIEQIELFKNSLSGE------LPVKWVNMT--TLLRFDA- 290 (698)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~--~L~~L~l- 290 (698)
|.+++..+..+... +|+.|++++|.+. +..|..+.+++.++.+++..+.+.+. .+..+..+. .++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 66654444444333 5666666666554 23445555666666555543322210 011111111 2334444
Q ss_pred CCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee
Q 005410 291 SMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE 369 (698)
Q Consensus 291 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 369 (698)
..+.+.+..|. +..+ +++.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 56677777776 5555 8999999999997 455 788899999999999999 5677 45 899999999999976655
Q ss_pred cCcccCCCCCCCEEeccCCcCccc--CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhh
Q 005410 370 IPEGLCEKGSLEDLVLIYNSFSGK--IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSI 446 (698)
Q Consensus 370 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 446 (698)
. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 577899999999999999876 48889999999999999999885 55889999999999999999998877 688
Q ss_pred hcCCCCCeeeccCccceeecCccccccCCceEEECCCCccee-cccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005410 447 SGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 999999999999999999999999999999999999999997 4788899999999999999999999999999999999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc--cCeEEcccCcCcccCChhhhhhcCCc
Q 005410 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR--LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 526 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
+|+|++|++++.+|..|.++++|++||+++|+++ .+|..+..+. |+++++++|++.|.|+..|+..|...
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 9999999999988999999999999999999999 5666677773 99999999999999999888777643
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-57 Score=521.13 Aligned_cols=525 Identities=21% Similarity=0.187 Sum_probs=443.1
Q ss_pred CcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcc-cCCcCCcCCCCCCEEECCCCCCcccCcc
Q 005410 54 CHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINS-SLPLDISTCRNLTDLNLGSNLLVGAIPA 132 (698)
Q Consensus 54 C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 132 (698)
|.|..|.+ .+.++++|+|++|.+++..+..|.++++|++|+|++|...+ +.|.+|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45566655 56789999999999999889999999999999999995544 4488899999999999999999988999
Q ss_pred ccCCCCCCCEEECCCCcCcccCCcC--ccCCCCccEEEccCcccCCccc-ccccCcCCCcEeeccCCCCCCCCCcccccC
Q 005410 133 TLSQLKNLKSLELQENNFTGDIPAS--FGEFTQLESLSLFNNLLNGTIS-SSLGNISTLKELRLAYNPFQPGQLPSQLSN 209 (698)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 209 (698)
.|.++++|++|+|++|.+.+..+.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.++ ...+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-eeCHHHccc
Confidence 9999999999999999998766654 8999999999999999987655 57899999999999999988 556777777
Q ss_pred C--CCCCEEEcccCCCCCcCCccccCCCC------CCEEEccCCCCcccCCccccCC---CCCceeeccCC---------
Q 005410 210 L--TNLEYLWLSGCNLLGEIPESLTRLTK------LKNLDLSFNGLTGSIPSSITEM---KSIEQIELFKN--------- 269 (698)
Q Consensus 210 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n--------- 269 (698)
+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+... ..++.+.+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6 89999999999999888877776665 9999999999887777666543 56777777633
Q ss_pred cceeccCcccccc--ccccccccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCC
Q 005410 270 SLSGELPVKWVNM--TTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGL 346 (698)
Q Consensus 270 ~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 346 (698)
.+.+.....+..+ ++|+.|++++|.+.+..+..+..+ +|+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 2222233334443 789999999999998888878777 8999999999999888888999999999999999999888
Q ss_pred CccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCC
Q 005410 347 PSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLP 426 (698)
Q Consensus 347 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 426 (698)
|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+. ..+++|+.|++++|.++.. |.. ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~~---~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PKI---NL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CCC---CT
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-ccc---cc
Confidence 88999999999999999999888888889999999999999998743 3378899999999999843 432 56
Q ss_pred CCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecCc-cccccCCceEEECCCCcce-----ecccchhccCCC
Q 005410 427 HMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFA-----GQIPGSLAKLSQ 499 (698)
Q Consensus 427 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~ 499 (698)
+++.+++++|++.+... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 88999999999987533 3456899999999999999865443 4566899999999999987 444567889999
Q ss_pred CCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccC
Q 005410 500 LGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNN 579 (698)
Q Consensus 500 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N 579 (698)
|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+. ++|+.|||++|++++..|..+. .|+.+++++|
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~L~~l~l~~N 557 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--SLSVLDITHN 557 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS--SCCEEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC--CcCEEEecCC
Confidence 99999999999999999999999999999999999987777666 8999999999999999998775 3899999999
Q ss_pred cCcccCChhhhhhcC
Q 005410 580 RLSGELPPLYAKEMY 594 (698)
Q Consensus 580 ~l~~~~~~~~~~~~~ 594 (698)
++.|.|+..|+..|.
T Consensus 558 p~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 558 KFICECELSTFINWL 572 (844)
T ss_dssp CCCCSSSCCSHHHHH
T ss_pred CcccccccHHHHHHH
Confidence 999999987666553
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.5e-56 Score=494.64 Aligned_cols=527 Identities=20% Similarity=0.187 Sum_probs=453.9
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005410 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.++.++..++ .+|..+. +++++|+|++|.+++..|.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3455555565 3344443 379999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCc
Q 005410 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE 229 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 229 (698)
+.+..|.+|+++++|++|++++|.+++..+..+.++++|++|++++|.+.....|..+ .+++|++|++++|.+++..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChh
Confidence 9999999999999999999999999988888899999999999999999844555544 499999999999999988888
Q ss_pred cccCCCCCC--EEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCC--------Ccccccc
Q 005410 230 SLTRLTKLK--NLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM--------NQLTGTI 299 (698)
Q Consensus 230 ~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~--------n~l~~~~ 299 (698)
.+..+++|+ .|++++|.+.+..|..+.. .+|+.|++++|.. .+..+..+..+....+.. ..+....
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 999999999 9999999999877766554 6899999999862 233333333332222211 1222233
Q ss_pred CCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCC
Q 005410 300 PNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379 (698)
Q Consensus 300 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 379 (698)
...+...+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 33344448999999999999888888999999999999999998 67888999999999999999999888889999999
Q ss_pred CCEEeccCCcCcccCCc-cccCCCCCcEEEccCccCcCcc--CccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005410 380 LEDLVLIYNSFSGKIPQ-SLGKCRSLRRVRLRHNLLSGSV--PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 380 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999999999866554 5899999999999999999776 77899999999999999999999999999999999999
Q ss_pred ccCccceeecCc-cccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccc---cchhhhccCCCCEEeCCCC
Q 005410 457 VSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGG---IPEGIESWKNINELNLANN 532 (698)
Q Consensus 457 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N 532 (698)
+++|++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|++|+|++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 999999977664 488999999999999999998999999999999999999999863 3367899999999999999
Q ss_pred cCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh--hhhhcCCcccCCCCCCCC
Q 005410 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL--YAKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~--~~~~~~~~~~~~n~~~c~ 606 (698)
++++..|..|..+++|++|+|++|++++..|..+..++ | .|++++|++++..|.. .........+.+||..|.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 99999999999999999999999999999999999988 9 9999999999877754 334445566789998873
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-55 Score=487.59 Aligned_cols=486 Identities=19% Similarity=0.217 Sum_probs=427.6
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
.++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred CCCcCcc-cCCcCccCCCCccEEEccCcccCCcccccccCcCCCc----EeeccCCCCCCCCCcccccCCCCCCEEEccc
Q 005410 146 QENNFTG-DIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLK----ELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220 (698)
Q Consensus 146 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 220 (698)
++|.+.+ .+|..|+++++|++|++++|.+++..+..++.+.+|+ +|++++|.++ .++.......+|++|++++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID--FIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC--EECTTTTTTCEEEEEEEES
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc--eeCcccccCceeeeeeccC
Confidence 9999986 5699999999999999999999998888888887766 8999999988 4455444555999999999
Q ss_pred CCCC-CcCCccccCCCCCCEEEccCCCCccc------CCccccCCC--CCceeec-cCCcceeccCcccccccccccccc
Q 005410 221 CNLL-GEIPESLTRLTKLKNLDLSFNGLTGS------IPSSITEMK--SIEQIEL-FKNSLSGELPVKWVNMTTLLRFDA 290 (698)
Q Consensus 221 n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~------~~~~~~~l~--~L~~L~l-~~n~~~~~~~~~~~~~~~L~~L~l 290 (698)
|.+. +..+..+..++.|+.+++..+.+.+. .+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.+++
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l 292 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSL 292 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEe
Confidence 9987 45677889999999998866554321 111222222 4666677 66788887777 899999999999
Q ss_pred CCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee
Q 005410 291 SMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE 369 (698)
Q Consensus 291 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 369 (698)
+++.+. .+| .+... +|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++.
T Consensus 293 ~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 293 AGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS 365 (606)
T ss_dssp ESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred cCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence 999997 455 55555 899999999999 57774 4 8999999999999665443 577899999999999999876
Q ss_pred --cCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchhh
Q 005410 370 --IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKSI 446 (698)
Q Consensus 370 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 446 (698)
.+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 47888999999999999999885 55889999999999999999998877 689999999999999999999999999
Q ss_pred hcCCCCCeeeccCcccee-ecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005410 447 SGANNLSSLLVSRNNFSG-SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
..+++|++|++++|++.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 999999999999999987 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcCcccCCcccCCCC-CCcEEeCCCCcCcccCc
Q 005410 526 ELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 526 ~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p 563 (698)
+|+|++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999 6777799997 59999999999997554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-54 Score=499.20 Aligned_cols=521 Identities=19% Similarity=0.173 Sum_probs=444.5
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCccc-CccccCCCCCCCEEECCCC
Q 005410 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGA-IPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n 148 (698)
..+.++++++.... -.++|++|+|++|.+++..+.+|.++++|++|+|++|...+. .|.+|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45666777775543 457999999999999999999999999999999999965544 4889999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCCccccc--ccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 149 NFTGDIPASFGEFTQLESLSLFNNLLNGTISSS--LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
.+.+..|.+|.++++|++|++++|.+++..+.. +.++++|++|++++|.++....+..++++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999866654 899999999999999998545557899999999999999999999
Q ss_pred CCccccCC--CCCCEEEccCCCCcccCCccccCCCC------CceeeccCCcceeccCcccccc---ccccccccCCC--
Q 005410 227 IPESLTRL--TKLKNLDLSFNGLTGSIPSSITEMKS------IEQIELFKNSLSGELPVKWVNM---TTLLRFDASMN-- 293 (698)
Q Consensus 227 ~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n-- 293 (698)
.+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+.+..+..+... ..+..+.++.+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 99888887 89999999999999888877776665 9999999999988777766543 45666666532
Q ss_pred -------ccccccCCcccc---ccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc
Q 005410 294 -------QLTGTIPNELCE---LQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 294 -------~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 363 (698)
.+.+.....+.. .+++.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 333333333333 2799999999999988889999999999999999999999899999999999999999
Q ss_pred CccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc
Q 005410 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS 443 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 443 (698)
|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++. ..+++|+.|++++|++... |
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-P 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-C
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-c
Confidence 999988899999999999999999999988888899999999999999999853 2388999999999999844 3
Q ss_pred hhhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcceecccc-hhccCCCCCeEEcccCccc-----cccch
Q 005410 444 KSISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELS-----GGIPE 516 (698)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~ 516 (698)
.. ...++.|++++|++.+... ..+..+++|+.|++++|++.+..+. .+..+++|++|+|++|.++ +..+.
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 32 4679999999999985432 2356899999999999999865443 4567899999999999997 44456
Q ss_pred hhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCCc
Q 005410 517 GIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 517 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
.|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ..|+.|++++|++++..|..+ ......
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~-~~L~~l 552 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF-VSLSVL 552 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC-SSCCEE
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh-CCcCEE
Confidence 788999999999999999999999999999999999999999988877766 349999999999999888553 334445
Q ss_pred ccCCCCCCC
Q 005410 597 SFLGNPGLC 605 (698)
Q Consensus 597 ~~~~n~~~c 605 (698)
.+.+||..|
T Consensus 553 ~l~~Np~~C 561 (844)
T 3j0a_A 553 DITHNKFIC 561 (844)
T ss_dssp EEEEECCCC
T ss_pred EecCCCccc
Confidence 567899888
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.3e-56 Score=492.20 Aligned_cols=506 Identities=20% Similarity=0.287 Sum_probs=291.1
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCCcc---cccccCCCCCcEEEEECCCCCCCcCCCcc
Q 005410 17 LTQSLNQDGLYLRRVKLGLSDPTD--------SLASWDDTRVDTPCHW---RGVSCDPLTQRVTSVNLSQSQLSGPFPIF 85 (698)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~w~~~~~~~~C~~---~g~~c~~~~~~v~~L~l~~~~l~~~~~~~ 85 (698)
.+++..+|+.||.+++.++.++.. ..++|+... ++|.| .||+|+.. ++|+.|+|+++.+.|.+|..
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~--~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK--ELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS--CGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC--CcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChH
Confidence 344556799999999988764422 244798764 89999 99999864 79999999999999999999
Q ss_pred ccCCCCCCEEECCCCCCc------c------cCCcCCcCCCCCCEEECCCCCCcccCccccCC-CCCCCEEECCCCcCcc
Q 005410 86 FCRLPYLAQLSLYNNYIN------S------SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQ-LKNLKSLELQENNFTG 152 (698)
Q Consensus 86 ~~~l~~L~~L~Ls~n~~~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~ 152 (698)
++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+..|..+.. +..+..+++....+..
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 999999999999999762 1 112111 33445 566666666555554441 1111111111111000
Q ss_pred cCCcCccCCCCccEEEc--cCcccCCcccccccCcCCCcEeeccCCCCCCCC-----------------Cccccc--CCC
Q 005410 153 DIPASFGEFTQLESLSL--FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQ-----------------LPSQLS--NLT 211 (698)
Q Consensus 153 ~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~l~--~l~ 211 (698)
.....++.+.+ .+|.+++ +|..++++++|++|++++|.++ +. +|..++ +++
T Consensus 178 ------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 178 ------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp ------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccC
Confidence 00011111111 1233433 3444444444444444444443 21 444444 555
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCC-Ccc-cCCccccCC------CCCceeeccCCcceeccCc--cccc
Q 005410 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNG-LTG-SIPSSITEM------KSIEQIELFKNSLSGELPV--KWVN 281 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~ 281 (698)
+|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 55555555555555555555555555555555554 444 444444443 55555555555555 4444 4555
Q ss_pred cccccccccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCC-CCEEEccCCcCCcCCCccccCCC--CCC
Q 005410 282 MTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKN-LSELKLFNNKLRGGLPSELGKYS--PLT 357 (698)
Q Consensus 282 ~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~ 357 (698)
+++|+.|++++|.++|.+| .+..+ +|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 5555555555555554444 33333 5555555555555 55556666666 777777777766 4555555433 666
Q ss_pred EEEcccCccceecCcccC-------CCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCE
Q 005410 358 TLDLSYNQFSGEIPEGLC-------EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430 (698)
Q Consensus 358 ~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 430 (698)
+|++++|.+++..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.++...+..+....
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~---- 481 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN---- 481 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT----
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc----
Confidence 777777666666665555 445566666666665533333344455666666666655522222222111
Q ss_pred EEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc--ccCCceEEECCCCcceecccchhccCCCCCeEEc---
Q 005410 431 FELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG--LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL--- 505 (698)
Q Consensus 431 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--- 505 (698)
..+.++++|++|++++|+++ .+|..+. .+++|++|++++|++.+ +|..+..+++|++|+|
T Consensus 482 -------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 482 -------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp -------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred -------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 00112236666666666666 4555554 66666666666666665 5666666777777777
Q ss_pred ---ccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccC
Q 005410 506 ---SENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 506 ---s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
++|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|++|||++|++....
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 456667777777777777777777777773 6666654 67777777777766543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-53 Score=471.36 Aligned_cols=495 Identities=21% Similarity=0.208 Sum_probs=396.6
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.+|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46777777777777777777777777777777777777766777777777777777777777666677777777777777
Q ss_pred cCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC----CEEEccCC
Q 005410 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL----KNLDLSFN 245 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n 245 (698)
++|.+++..+..++++++|++|++++|.++...+|..++++++|++|++++|.+++..+..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 77777766655677777777777777777744567777777788888888777777666667766666 77788888
Q ss_pred CCcccCCccccCCCCCceeeccCCccee-ccCccccccccccccccCCCcc---------ccccCCccccccccEEEccC
Q 005410 246 GLTGSIPSSITEMKSIEQIELFKNSLSG-ELPVKWVNMTTLLRFDASMNQL---------TGTIPNELCELQLESLNLYE 315 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l---------~~~~~~~~~~~~L~~L~l~~ 315 (698)
.+.+..+..+... +|++|++++|.... .++..+..++.++...+....+ .......+..+.++.++++.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7776666666554 67777777764321 2233344444444433322211 11112223334678888888
Q ss_pred c-cccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccC
Q 005410 316 N-RLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI 394 (698)
Q Consensus 316 n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 394 (698)
+ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 8 777788899999999999999999998 577778888 9999999999998 5554 47789999999999988766
Q ss_pred CccccCCCCCcEEEccCccCcCcc--CccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecC-cccc
Q 005410 395 PQSLGKCRSLRRVRLRHNLLSGSV--PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP-DEVG 471 (698)
Q Consensus 395 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 471 (698)
+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 54 67899999999999998664 67889999999999999999876655 8899999999999999987766 5688
Q ss_pred ccCCceEEECCCCcceecccchhccCCCCCeEEcccCccc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcE
Q 005410 472 LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNY 550 (698)
Q Consensus 472 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 550 (698)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 9999999999999999999999999999999999999998 578999999999999999999999888999999999999
Q ss_pred EeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhh-hc
Q 005410 551 LDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAK-EM 593 (698)
Q Consensus 551 L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~-~~ 593 (698)
|++++|++++..|..+..++ |+.|++++|+++|.||..++. .|
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~w 543 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHH
Confidence 99999999999888888887 999999999999999976443 44
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-53 Score=479.37 Aligned_cols=512 Identities=20% Similarity=0.257 Sum_probs=319.1
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCCCCCCCCCCC---CCCC--Ccc------------cccccCCCCCcEEEEECCCCCCC
Q 005410 17 LTQSLNQDGLYLRRVKLGLSDPTDSLASWDDTR---VDTP--CHW------------RGVSCDPLTQRVTSVNLSQSQLS 79 (698)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~~~--C~~------------~g~~c~~~~~~v~~L~l~~~~l~ 79 (698)
.++...+|+.||+++|.++.+| +|+... ..+| |.| .||+|+. .++|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3445667999999999999776 675443 1245 999 9999986 589999999999999
Q ss_pred cCCCccccCCCCCCEEEC-CCCCCcccCCcCCcCC-CCCCE--------------EEC-CCCCCcccC-----------c
Q 005410 80 GPFPIFFCRLPYLAQLSL-YNNYINSSLPLDISTC-RNLTD--------------LNL-GSNLLVGAI-----------P 131 (698)
Q Consensus 80 ~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~~l-~~L~~--------------L~L-s~n~l~~~~-----------~ 131 (698)
|.+|..|+++++|++|+| ++|.+++..+..-... ..+.. ++. ....+.... +
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8888877644221111 00000 000 000000000 0
Q ss_pred cccCCCCCCCEEECCC--CcCcccCCcCccCCCCccEEEccCcccCC-----------------ccccccc--CcCCCcE
Q 005410 132 ATLSQLKNLKSLELQE--NNFTGDIPASFGEFTQLESLSLFNNLLNG-----------------TISSSLG--NISTLKE 190 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~ 190 (698)
........++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 0011122233333333 56665 66667777777777777777766 3677766 7888888
Q ss_pred eeccCCCCCCCCCcccccCCCCCCEEEcccCC-CCC-cCCccccCC-------CCCCEEEccCCCCcccCCc--cccCCC
Q 005410 191 LRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCN-LLG-EIPESLTRL-------TKLKNLDLSFNGLTGSIPS--SITEMK 259 (698)
Q Consensus 191 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~ 259 (698)
|++++|.+. +.+|..++++++|++|++++|+ +++ .+|..+..+ ++|+.|++++|.++ .+|. .+..++
T Consensus 496 L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 496 VELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 888888776 6777778888888888888887 776 666655544 48888888888888 6777 788888
Q ss_pred CCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCC-CCEEEcc
Q 005410 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKN-LSELKLF 338 (698)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~ 338 (698)
+|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|. .+..+++ |+.|+++
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-----------------------~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-----------------------DFCAFTDQVEGLGFS 627 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT-----------------------TSCEECTTCCEEECC
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH-----------------------HHhhccccCCEEECc
Confidence 8888888888877 566 6666666666666666555 3333 3334444 5555555
Q ss_pred CCcCCcCCCccccCCC--CCCEEEcccCccceecCccc---C--CCCCCCEEeccCCcCcccCCccccCCCCCcEEEccC
Q 005410 339 NNKLRGGLPSELGKYS--PLTTLDLSYNQFSGEIPEGL---C--EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRH 411 (698)
Q Consensus 339 ~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 411 (698)
+|+++ .+|..+..++ +|+.|++++|.+.+.+|... . ..++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 55544 3344443332 25555555555544333211 1 223556666666666532222333556666666666
Q ss_pred ccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc--ccCCceEEECCCCcceec
Q 005410 412 NLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG--LLSNLVEFSGDGNKFAGQ 489 (698)
Q Consensus 412 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~ 489 (698)
|.++...+..+...+ ....++++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+.+
T Consensus 707 N~L~~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 707 NLMTSIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp CCCSCCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred CcCCccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 666532222222111 00111224444444444444 3343333 44444444444444443
Q ss_pred ccchhccCCCCCeEEc------ccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 490 IPGSLAKLSQLGNLDL------SENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 490 ~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+|..+..+++|+.|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|||++|++....+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 3444445555555555 45888889999999999999999999999 58888765 699999999999988777
Q ss_pred ccccccc-cCeEEcccCcCcc--cCC
Q 005410 564 LELQNLR-LNVLNLSNNRLSG--ELP 586 (698)
Q Consensus 564 ~~~~~~~-L~~L~ls~N~l~~--~~~ 586 (698)
..+.... +..+.+.+|++.. .||
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHccccccchheeecCCCccccCCCC
Confidence 7766654 7778888887765 455
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-50 Score=447.55 Aligned_cols=502 Identities=22% Similarity=0.205 Sum_probs=428.3
Q ss_pred CCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccC
Q 005410 53 PCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAI 130 (698)
Q Consensus 53 ~C~~~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 130 (698)
.|...+.+-.+ .+.+++.|++++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+.+..
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp ECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 35554444333 3568999999999999998999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCC-cccccccCcCCCcEeeccCCCCCCCCCcccccC
Q 005410 131 PATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSN 209 (698)
Q Consensus 131 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 209 (698)
|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|.++ ...+..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence 8999999999999999999997766679999999999999999987 46899999999999999999988 445667777
Q ss_pred CCCC----CEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCceeeccCCcc------eeccCcc
Q 005410 210 LTNL----EYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG-SIPSSITEMKSIEQIELFKNSL------SGELPVK 278 (698)
Q Consensus 210 l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~------~~~~~~~ 278 (698)
+++| +.|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+ .......
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 7788 899999999998888877766 89999999885432 2445566777776665543222 1122222
Q ss_pred ccccc--cccccccCCC-ccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCC
Q 005410 279 WVNMT--TLLRFDASMN-QLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYS 354 (698)
Q Consensus 279 ~~~~~--~L~~L~l~~n-~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 354 (698)
+..++ .++.++++.+ .+.+..+..+..+ ++++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..++
T Consensus 251 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 33333 2455666666 6666777777766 8999999999998 678888888 9999999999998 4454 4788
Q ss_pred CCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccC--CccccCCCCCcEEEccCccCcCccCccccCCCCCCEEE
Q 005410 355 PLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI--PQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 432 (698)
+|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 999999999998876654 67899999999999998664 67888999999999999999876655 99999999999
Q ss_pred ccCCccccccc-hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcce-ecccchhccCCCCCeEEcccCcc
Q 005410 433 LADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQLGNLDLSENEL 510 (698)
Q Consensus 433 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 510 (698)
+++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99999987765 56889999999999999999999999999999999999999997 57889999999999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcc
Q 005410 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 998899999999999999999999988888899999999999999999987764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-51 Score=452.54 Aligned_cols=493 Identities=20% Similarity=0.230 Sum_probs=347.5
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCcc
Q 005410 53 PCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPA 132 (698)
Q Consensus 53 ~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 132 (698)
.|.|.|+ |+ .+++.++.. |..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE----------CTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE----------CCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4778776 63 344555533 33332 6778888888877777777777778888888888877777777
Q ss_pred ccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCc-ccccccCcCCCcEeeccCCCCCCCCCc-ccccCC
Q 005410 133 TLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLP-SQLSNL 210 (698)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~l~~l 210 (698)
+|..+++|++|++++|.+++..+..|+++++|++|++++|.+++. .+..+.++++|++|++++|.+. ..+| ..+.++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcc
Confidence 777777777777777777766666677777777777777777653 4456677777777777777633 2333 456666
Q ss_pred CCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceecc--C-ccccccccccc
Q 005410 211 TNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGEL--P-VKWVNMTTLLR 287 (698)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~~L~~ 287 (698)
++|++|++++|.+++..|..+..+++|++|+++.|.+....+..+..+++|++|++++|.+++.. + .....+++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~--- 224 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP--- 224 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC---
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc---
Confidence 77777777777776666666666677777777666655322222344566666666666655421 0 01112333
Q ss_pred cccCCCccccccCCccccccccEEEccCccccccC----ChhccCCCCCCEEEccCCcCCcCC------CccccCCCCCC
Q 005410 288 FDASMNQLTGTIPNELCELQLESLNLYENRLEGTL----PESIARSKNLSELKLFNNKLRGGL------PSELGKYSPLT 357 (698)
Q Consensus 288 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~~~~L~ 357 (698)
++.|++++|.+.+.. +..+..+++|+.+++++|.+.+.. ...+..+++++
T Consensus 225 --------------------L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 225 --------------------MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp --------------------CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred --------------------ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 444444444443321 122344566666666666655421 12345566777
Q ss_pred EEEcccCcccee-----cCcccCCCCCCCEEeccCCcCcccCCccc-cCCCCCcEEEccCccCcCccC---ccccCCCCC
Q 005410 358 TLDLSYNQFSGE-----IPEGLCEKGSLEDLVLIYNSFSGKIPQSL-GKCRSLRRVRLRHNLLSGSVP---EMFWGLPHM 428 (698)
Q Consensus 358 ~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L 428 (698)
.|++.++.+... ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+++..| ..+..+++|
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 888777765432 1112233467899999999887 556555 578999999999999987664 347788999
Q ss_pred CEEEccCCccccccc--hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcc
Q 005410 429 YLFELADNSFTGKIS--KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLS 506 (698)
Q Consensus 429 ~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 506 (698)
+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.. +|..+ .++|++|+++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls 439 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVS 439 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECC
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECC
Confidence 999999999986643 56888999999999999998 678888999999999999999874 34333 2689999999
Q ss_pred cCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccC
Q 005410 507 ENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGEL 585 (698)
Q Consensus 507 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~ 585 (698)
+|++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..++ |+.|++++|++.|.|
T Consensus 440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 99998653 57899999999999999 6776 56799999999999999999998899888 999999999999999
Q ss_pred Chh-hhhhcC
Q 005410 586 PPL-YAKEMY 594 (698)
Q Consensus 586 ~~~-~~~~~~ 594 (698)
|.. |+..|.
T Consensus 514 ~~~~~l~~~l 523 (549)
T 2z81_A 514 PRIDYLSRWL 523 (549)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 954 555454
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.7e-49 Score=441.51 Aligned_cols=519 Identities=21% Similarity=0.174 Sum_probs=334.5
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
.+++|||++|.|++..+.+|.++++|++|+|++|+++++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 44455555555554444445555555555555555544444445555555555555555544444445555555555555
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCc-ccccccCcCCCcEeeccCCCCCCCCCcccccCCCC----CCEEEcccC
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTN----LEYLWLSGC 221 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~----L~~L~l~~n 221 (698)
+|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.++ ...+..+..+.+ ...++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccC
Confidence 5555444444444555555555555544432 2344444455555555555444 122223322221 223444444
Q ss_pred CCCCcCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCceeeccCCcc------eeccCccccccccccccccCCCc
Q 005410 222 NLLGEIPESLTRLTKLKNLDLSFNGLTG-SIPSSITEMKSIEQIELFKNSL------SGELPVKWVNMTTLLRFDASMNQ 294 (698)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~------~~~~~~~~~~~~~L~~L~l~~n~ 294 (698)
.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.. .......+.....+...++..+.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 4443322222 22233344444443221 1112233333333333322111 11111222223333333222221
Q ss_pred ccc---ccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceec
Q 005410 295 LTG---TIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370 (698)
Q Consensus 295 l~~---~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 370 (698)
... .....+... .++.+.+..+.+... ..+.....++.|++.+|.+....+. .+..|+.+++..|......
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc
Confidence 111 111122222 677788877776643 3455667899999999988755443 4567889999988776443
Q ss_pred CcccCCCCCCCEEeccCCcCcc--cCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhh
Q 005410 371 PEGLCEKGSLEDLVLIYNSFSG--KIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSIS 447 (698)
Q Consensus 371 ~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 447 (698)
....+++|+.+++++|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+......+ ..+.
T Consensus 366 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 366 --SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp --CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred --ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 34578899999999998863 456677788999999999998774 45568899999999999888765544 5678
Q ss_pred cCCCCCeeeccCccceeecCccccccCCceEEECCCCcce-ecccchhccCCCCCeEEcccCccccccchhhhccCCCCE
Q 005410 448 GANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINE 526 (698)
Q Consensus 448 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 526 (698)
.+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 8999999999999999999999999999999999999754 467888999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCccccccc-c-cCeEEcccCcCcccCChhhhhhcCC
Q 005410 527 LNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNL-R-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 527 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|+|++|++++..|..|.++++|++|||++|++++..|..+..+ + |++|++++|||.|.|...|+..|.+
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 9999999999889999999999999999999999999999887 4 9999999999999999888877754
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-49 Score=430.08 Aligned_cols=469 Identities=17% Similarity=0.173 Sum_probs=355.5
Q ss_pred CEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005410 93 AQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 93 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
++|++++|+++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|.+|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999985 565555 89999999999999888899999999999999999999888999999999999999999
Q ss_pred ccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC--CEEEccCCCC--c
Q 005410 173 LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL--KNLDLSFNGL--T 248 (698)
Q Consensus 173 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~ 248 (698)
.++. +|.. .+++|++|++++|.++...+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9984 4544 799999999999999855678899999999999999999876 356777777 9999999998 6
Q ss_pred ccCCccccCCC-CCceeeccCCcceeccCc-cccccccccccccCCCccccccCCccccccccEEEccCccccccCChhc
Q 005410 249 GSIPSSITEMK-SIEQIELFKNSLSGELPV-KWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESI 326 (698)
Q Consensus 249 ~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 326 (698)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|....... .+.+.++ .+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------~~~~~~~-~l 216 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS----------------YFLSILA-KL 216 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----------------HHHHHHH-GG
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc----------------eeecchh-hh
Confidence 67777776665 233456666666554433 34556666666666654100000 0222222 45
Q ss_pred cCCCCCCEEEccCCcCCcCCCcccc---CCCCCCEEEcccCccceecCccc-----CCCCCCCEEeccCCcCcccCC-cc
Q 005410 327 ARSKNLSELKLFNNKLRGGLPSELG---KYSPLTTLDLSYNQFSGEIPEGL-----CEKGSLEDLVLIYNSFSGKIP-QS 397 (698)
Q Consensus 327 ~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~ 397 (698)
..+++|+.|++++|.+++..+..+. ..++|++|++++|.+++.+|..+ ..++.|+.+++++|.+ .+| ..
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~ 294 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSY 294 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhh
Confidence 5566677777766665543221111 13467777777777776677666 6677777777777777 344 33
Q ss_pred ccCC---CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcccee--ecCccccc
Q 005410 398 LGKC---RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSG--SIPDEVGL 472 (698)
Q Consensus 398 ~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~ 472 (698)
+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 4333 56788888887765432 12567788888888888887777777888888888888888875 45567788
Q ss_pred cCCceEEECCCCcceecccc-hhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEE
Q 005410 473 LSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYL 551 (698)
Q Consensus 473 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 551 (698)
+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 88888888888888874554 478889999999999999877776654 78999999999999 788888899999999
Q ss_pred eCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhh-hhcC
Q 005410 552 DLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYA-KEMY 594 (698)
Q Consensus 552 ~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~-~~~~ 594 (698)
++++|+++...+..+..++ |++|++++|+++|.|+..|+ ..|.
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 9999999954444477777 99999999999999998777 5554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-48 Score=429.28 Aligned_cols=489 Identities=17% Similarity=0.155 Sum_probs=378.8
Q ss_pred CCCCCCCCCCCCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEE
Q 005410 43 ASWDDTRVDTPCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLN 120 (698)
Q Consensus 43 ~~w~~~~~~~~C~~~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 120 (698)
|.|... +.|++.+++..+ ...++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 4 C~~~~~---c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGV---CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSE---EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCce---EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 556543 235666666554 346899999999999999899999999999999999999999999999999999999
Q ss_pred CCCCCCcccCccccCCCCCCCEEECCCCcCcc-cCCcCccCCCCccEEEccCccc-CCcccccccCcCCCcEeeccCCCC
Q 005410 121 LGSNLLVGAIPATLSQLKNLKSLELQENNFTG-DIPASFGEFTQLESLSLFNNLL-NGTISSSLGNISTLKELRLAYNPF 198 (698)
Q Consensus 121 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~ 198 (698)
+++|.+.+..|..|.++++|++|++++|.+++ ..|..++++++|++|++++|.+ ....+..+.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999998888889999999999999999986 3567899999999999999984 444456899999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccC--C-ccccCCCCCceeeccCCcceecc
Q 005410 199 QPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSI--P-SSITEMKSIEQIELFKNSLSGEL 275 (698)
Q Consensus 199 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~~~~~~ 275 (698)
+ ...|..++.+++|++|++++|.+.......+..+++|++|++++|.+++.. + .....+++|+.|++.+|.+.+..
T Consensus 161 ~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 R-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp C-EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred c-ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 8 567889999999999999999987544334567999999999999998642 2 23345789999999999988654
Q ss_pred Ccc----ccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcC-----C
Q 005410 276 PVK----WVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGG-----L 346 (698)
Q Consensus 276 ~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~ 346 (698)
+.. +..+++++.+++++|.+.+...... .....+..+.+|+.|++.++.+... .
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-----------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNP-----------------SESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-----------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred HHHHHHHhhhhccccccccccccccccccccc-----------------cchhhhhhhcccccccccccccchhhhcccc
Confidence 433 3456677777777776654211000 0112234456666676666655431 1
Q ss_pred CccccCCCCCCEEEcccCccceecCccc-CCCCCCCEEeccCCcCcccCC---ccccCCCCCcEEEccCccCcCccC--c
Q 005410 347 PSELGKYSPLTTLDLSYNQFSGEIPEGL-CEKGSLEDLVLIYNSFSGKIP---QSLGKCRSLRRVRLRHNLLSGSVP--E 420 (698)
Q Consensus 347 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~ 420 (698)
+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 112233456777777777775 455544 457777777777777776543 235677788888888888776532 4
Q ss_pred cccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCC
Q 005410 421 MFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQL 500 (698)
Q Consensus 421 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 500 (698)
.+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.. ..+++|
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChh
Confidence 5777888888888888887 45666777788888888888876 334332 368999999999888653 578999
Q ss_pred CeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 501 GNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 501 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|+.|++++|++++..|
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999998 5665 4679999999999999998888889999999999999999998776
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-47 Score=416.30 Aligned_cols=456 Identities=20% Similarity=0.214 Sum_probs=360.3
Q ss_pred EEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005410 69 TSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
+.+++++++++. +|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|++.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 479999999995 555554 89999999999999988889999999999999999999998999999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCC-cccccccCcCCCcEeeccCCCCCCCCCcccccCCCCC--CEEEcccCCC--
Q 005410 149 NFTGDIPASFGEFTQLESLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL--EYLWLSGCNL-- 223 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l-- 223 (698)
+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence 999 45655 89999999999999997 467899999999999999999882 457778888 9999999999
Q ss_pred CCcCCccccCCC-CCCEEEccCCCCcccCC-ccccCCCCCceeeccCCc-------ceeccCccccccccccccccCCCc
Q 005410 224 LGEIPESLTRLT-KLKNLDLSFNGLTGSIP-SSITEMKSIEQIELFKNS-------LSGELPVKWVNMTTLLRFDASMNQ 294 (698)
Q Consensus 224 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~~L~~L~l~~n~ 294 (698)
.+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 777887777665 34467888888776554 457789999999999997 665555 67777777777777766
Q ss_pred cccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccc-----cCCCCCCEEEcccCcccee
Q 005410 295 LTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSEL-----GKYSPLTTLDLSYNQFSGE 369 (698)
Q Consensus 295 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~ 369 (698)
+++..+..+. ... ..++|++|++++|++++.+|..+ ..++.|+.+++++|.+ .
T Consensus 232 l~~~~~~~~~-------------------~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 232 TTWNSFIRIL-------------------QLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp EEHHHHHHHH-------------------HHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred cCHHHHHHHH-------------------HHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence 6543222111 011 12456666666666665555555 5666666666666666 3
Q ss_pred cC-cccCCC---CCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccc--ccc
Q 005410 370 IP-EGLCEK---GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG--KIS 443 (698)
Q Consensus 370 ~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 443 (698)
+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..|
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 33 223222 45777777777665332 12567788888888888887778888888888888888888876 456
Q ss_pred hhhhcCCCCCeeeccCccceeecCc-cccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccC
Q 005410 444 KSISGANNLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK 522 (698)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 522 (698)
..+..+++|++|++++|++.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC
Confidence 7788889999999999999874554 478889999999999999887776554 79999999999999 7788888999
Q ss_pred CCCEEeCCCCcCcccCCcc-cCCCCCCcEEeCCCCcCcccCc
Q 005410 523 NINELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 523 ~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+|++|+|++|+++ .+|.. |..+++|++|++++|++++..+
T Consensus 445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999999999 56654 9999999999999999998654
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-48 Score=431.47 Aligned_cols=464 Identities=19% Similarity=0.258 Sum_probs=325.9
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.+... +..++... +...+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKG-----------ISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTTS-----------BCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-Cccccccc-----------cccCchHHH--HHHHH-hhH
Confidence 4678888888888888888888888888888888865311 11111000 000112211 33444 555
Q ss_pred cCcccCCcccccccC-cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcc--cCCCCCcCCccccCCCCCCEEEccCCC
Q 005410 170 FNNLLNGTISSSLGN-ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLS--GCNLLGEIPESLTRLTKLKNLDLSFNG 246 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~l~~n~ 246 (698)
+++.+.+.++..+.. +..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|++++|.
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~ 217 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc
Confidence 555555544444431 2222222322221110 001111211121 234444 44445555555555555555
Q ss_pred Cccc-----------------CCcccc--CCCCCceeeccCCcceeccCccccccccccccccCCCc-ccc-ccCCcccc
Q 005410 247 LTGS-----------------IPSSIT--EMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQ-LTG-TIPNELCE 305 (698)
Q Consensus 247 l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~ 305 (698)
+++. +|..+. ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~ 297 (636)
T 4eco_A 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297 (636)
T ss_dssp CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH
T ss_pred cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh
Confidence 5543 455555 55555555555555555555555555555555555555 554 44544433
Q ss_pred -------ccccEEEccCccccccCCh--hccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCC
Q 005410 306 -------LQLESLNLYENRLEGTLPE--SIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376 (698)
Q Consensus 306 -------~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 376 (698)
.+|++|++++|.++ .+|. .+..+++|+.|++++|++++.+| .+..+++|++|++++|.++ .+|..+..
T Consensus 298 L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 374 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG 374 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE
T ss_pred hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh
Confidence 26777888888887 6777 88888999999999999987788 7888889999999999888 77888888
Q ss_pred CCC-CCEEeccCCcCcccCCccccCCC--CCcEEEccCccCcCccCcccc-------CCCCCCEEEccCCccccccchhh
Q 005410 377 KGS-LEDLVLIYNSFSGKIPQSLGKCR--SLRRVRLRHNLLSGSVPEMFW-------GLPHMYLFELADNSFTGKISKSI 446 (698)
Q Consensus 377 ~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 446 (698)
+++ |++|++++|.+. .+|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+
T Consensus 375 l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH
T ss_pred hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH
Confidence 888 999999999988 6777777654 899999999999988888887 78899999999999996655667
Q ss_pred hcCCCCCeeeccCccceeecCcc-cccc-------CCceEEECCCCcceecccchhc--cCCCCCeEEcccCccccccch
Q 005410 447 SGANNLSSLLVSRNNFSGSIPDE-VGLL-------SNLVEFSGDGNKFAGQIPGSLA--KLSQLGNLDLSENELSGGIPE 516 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~ 516 (698)
..+++|++|++++|+++ .+|.. +... ++|++|++++|.++ .+|..+. .+++|++|+|++|++++ +|.
T Consensus 454 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 454 STGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp HTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred ccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 77899999999999998 55543 3322 39999999999999 6777776 99999999999999997 899
Q ss_pred hhhccCCCCEEeC------CCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccC
Q 005410 517 GIESWKNINELNL------ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGEL 585 (698)
Q Consensus 517 ~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~ 585 (698)
.+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ..|+.|++++|++.+.-
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 9999999999999 56788889999999999999999999999 57777765 24999999999998743
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-45 Score=408.79 Aligned_cols=488 Identities=19% Similarity=0.183 Sum_probs=397.4
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005410 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
.++++|+|++|.|+++.+.+|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 47999999999999999999999999999999999999988889999999999999999999888889999999999999
Q ss_pred CCCcCcc-cCCcCccCCCCccEEEccCcccCCcccccccCcCCCc----EeeccCCCCCCCCCcccccCCCCCCEEEccc
Q 005410 146 QENNFTG-DIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLK----ELRLAYNPFQPGQLPSQLSNLTNLEYLWLSG 220 (698)
Q Consensus 146 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 220 (698)
++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+.+++ .++++.|.+. .++........++.+++.+
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~--~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC--EECTTTTTTCEEEEEEEES
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc--ccCcccccchhhhhhhhhc
Confidence 9999976 4578889999999999999999988888887766554 6888999887 3444444555678888888
Q ss_pred CCCCC-cCCccccCCCCCCEEEccCCCCc------ccCCccccCCCCCceeeccCCcc---eeccCcccccccccccccc
Q 005410 221 CNLLG-EIPESLTRLTKLKNLDLSFNGLT------GSIPSSITEMKSIEQIELFKNSL---SGELPVKWVNMTTLLRFDA 290 (698)
Q Consensus 221 n~l~~-~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~~~~L~~L~l 290 (698)
|.... ..+..+..+..++...+..+... ......+.....+....+..+.. .......+....+++.+++
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence 76542 23345677788877766543322 22233344444555555444322 2233445667788888888
Q ss_pred CCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccce--
Q 005410 291 SMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG-- 368 (698)
Q Consensus 291 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-- 368 (698)
..+.+....+. .....++.|++.+|.+....+ ..+..|+.+++..|.+.... ....+++|+.+++++|.+..
T Consensus 314 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 314 VSVTIERVKDF-SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp ESCEEEECGGG-GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred ccccccccccc-ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence 88877643321 122278999999998875433 34578999999999876433 34578999999999998853
Q ss_pred ecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCcc-CccccCCCCCCEEEccCCccccccchhhh
Q 005410 369 EIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-PEMFWGLPHMYLFELADNSFTGKISKSIS 447 (698)
Q Consensus 369 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 447 (698)
..+..+....+|+.+++..+.... .+..+..+++|+.+++..+...... ...|..+++++.++++.|.+.+..+..+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 456667788899999999998874 4556888999999999988776544 45688999999999999999999999999
Q ss_pred cCCCCCeeeccCccc-eeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCE
Q 005410 448 GANNLSSLLVSRNNF-SGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINE 526 (698)
Q Consensus 448 ~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 526 (698)
.++.++.|++++|++ .+..|..+..+++|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 999999999999975 4467888999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCcccCCC-CCCcEEeCCCCcCcccC
Q 005410 527 LNLANNRLSGEIPSEIGNL-PVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 527 L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 562 (698)
|+|++|++++..|..|..+ ++|++|+|++|++++..
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999999999999998 68999999999998744
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-45 Score=401.66 Aligned_cols=466 Identities=19% Similarity=0.195 Sum_probs=338.1
Q ss_pred CCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005410 89 LPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 89 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
+...+++++++|++++ +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445899999999986 555553 8999999999999988889999999999999999999988899999999999999
Q ss_pred ccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC--CEEEccCCC
Q 005410 169 LFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL--KNLDLSFNG 246 (698)
Q Consensus 169 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~ 246 (698)
+++|.++. +|.. .+++|++|++++|.++...+|..++++++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 99999984 4544 7899999999999998556678899999999999999988764 34445555 899999988
Q ss_pred C--cccCCccccCCC-CCceeeccCCcceeccCc-cccccccccccccCCCccccccCCccccccccEEEccCccccccC
Q 005410 247 L--TGSIPSSITEMK-SIEQIELFKNSLSGELPV-KWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTL 322 (698)
Q Consensus 247 l--~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 322 (698)
+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|..... .+. ..
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------~l~-~~ 241 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ------------------RLM-TF 241 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH------------------HHH-HH
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc------------------hHH-HH
Confidence 8 767777666654 111445566655543332 233444444444444421000 011 11
Q ss_pred ChhccCCCCCCEEEccCCcCCcCC----CccccCCCCCCEEEcccCccceecCccc-----CCCCCCCEEeccCCcCccc
Q 005410 323 PESIARSKNLSELKLFNNKLRGGL----PSELGKYSPLTTLDLSYNQFSGEIPEGL-----CEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 323 ~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~ 393 (698)
...+..++.|+.+++.++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 234455666666666666554321 111 123467777777777776666655 4444455555555554 2
Q ss_pred CC-ccccC---CCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcccee--ecC
Q 005410 394 IP-QSLGK---CRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSG--SIP 467 (698)
Q Consensus 394 ~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~ 467 (698)
+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|
T Consensus 319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 319 FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 33 22221 256888888888775332 12567888888888888887777788888888888888888875 334
Q ss_pred ccccccCCceEEECCCCcceeccc-chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 468 DEVGLLSNLVEFSGDGNKFAGQIP-GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..++
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~ 473 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ 473 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC
Confidence 567888889999999998887444 4578889999999999999877666554 78999999999999 7888778999
Q ss_pred CCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhh
Q 005410 547 VLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYA 590 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~ 590 (698)
+|++|+|++|+++...+..+..++ |+.|++++|++.|.|+..|+
T Consensus 474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 999999999999954444477777 99999999999999998866
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-44 Score=407.06 Aligned_cols=357 Identities=22% Similarity=0.296 Sum_probs=278.5
Q ss_pred CCCCCcCCccccCCCCCCEEEccCCCCcc-----------------cCCcccc--CCCCCceeeccCCcceeccCccccc
Q 005410 221 CNLLGEIPESLTRLTKLKNLDLSFNGLTG-----------------SIPSSIT--EMKSIEQIELFKNSLSGELPVKWVN 281 (698)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (698)
|++++ +|..+.++++|++|++++|.+++ .+|..++ .+++|++|++++|.+.+.+|..+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44444 45555555555555555555554 2555555 6666666666666666666666666
Q ss_pred cccccccccCCCc-ccc-ccCCccccc--------cccEEEccCccccccCCh--hccCCCCCCEEEccCCcCCcCCCcc
Q 005410 282 MTTLLRFDASMNQ-LTG-TIPNELCEL--------QLESLNLYENRLEGTLPE--SIARSKNLSELKLFNNKLRGGLPSE 349 (698)
Q Consensus 282 ~~~L~~L~l~~n~-l~~-~~~~~~~~~--------~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~ 349 (698)
+++|+.|++++|+ +++ .+|..+..+ +|+.|++++|.+. .+|. .+..+++|+.|++++|+++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 555 455444332 5888888888888 7777 8889999999999999998 667 7
Q ss_pred ccCCCCCCEEEcccCccceecCcccCCCCC-CCEEeccCCcCcccCCccccCCCC--CcEEEccCccCcCccCccc---c
Q 005410 350 LGKYSPLTTLDLSYNQFSGEIPEGLCEKGS-LEDLVLIYNSFSGKIPQSLGKCRS--LRRVRLRHNLLSGSVPEMF---W 423 (698)
Q Consensus 350 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~ 423 (698)
++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 888999999999999998 78888888888 999999999988 67777776654 9999999999988665432 2
Q ss_pred --CCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccc--------cCCceEEECCCCcceecccch
Q 005410 424 --GLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGL--------LSNLVEFSGDGNKFAGQIPGS 493 (698)
Q Consensus 424 --~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~ 493 (698)
.+++|+.|++++|.+....+..+..+++|+.|++++|++. .+|..+.. +++|+.|++++|++. .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 4458999999999999554455568899999999999998 55554332 349999999999999 67888
Q ss_pred hc--cCCCCCeEEcccCccccccchhhhccCCCCEEeCCC------CcCcccCCcccCCCCCCcEEeCCCCcCcccCccc
Q 005410 494 LA--KLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN------NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 494 ~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
+. .+++|+.|+|++|.+++ +|..+..+++|++|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 86 99999999999999997 788999999999999977 888889999999999999999999999 678877
Q ss_pred ccccccCeEEcccCcCcccCChh
Q 005410 566 LQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 566 ~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
+.. .|+.|++++|++...-+..
T Consensus 825 l~~-~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 825 LTP-QLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CCS-SSCEEECCSCTTCEEECGG
T ss_pred hcC-CCCEEECCCCCCCccChHH
Confidence 652 5999999999997655443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.9e-44 Score=391.92 Aligned_cols=455 Identities=20% Similarity=0.219 Sum_probs=348.7
Q ss_pred EEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005410 69 TSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
+.++++++++++ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|+.|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999996 444443 89999999999999998899999999999999999999999999999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCCc-ccccccCcCCCcEeeccCCCCCCCCCcccccCCCCC--CEEEcccCCC--
Q 005410 149 NFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL--EYLWLSGCNL-- 223 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l-- 223 (698)
.++ .+|.. .+++|++|++++|.+++. .|..++++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecccccc
Confidence 999 56655 899999999999999974 46889999999999999999883 234555666 9999999999
Q ss_pred CCcCCccccCCC--CCCEEEccCCCCcccCCc-cccCCCCCceeeccCCcc-----eeccCccccccccccccccCCCcc
Q 005410 224 LGEIPESLTRLT--KLKNLDLSFNGLTGSIPS-SITEMKSIEQIELFKNSL-----SGELPVKWVNMTTLLRFDASMNQL 295 (698)
Q Consensus 224 ~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~~~L~~L~l~~n~l 295 (698)
++..|..+..+. .+ .++++.|.+.+..+. .+..+++|+.+++++|.. .+. ...+..++.++.+++..+.+
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEE
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcC
Confidence 888888887765 33 568888888765543 456789999999999852 211 22345556666665554444
Q ss_pred ccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccc-----cCCCCCCEEEcccCccceec
Q 005410 296 TGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSEL-----GKYSPLTTLDLSYNQFSGEI 370 (698)
Q Consensus 296 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~ 370 (698)
.+ +.+.+. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+
T Consensus 262 ~~------------------~~~~~~-~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~ 319 (562)
T 3a79_B 262 TW------------------KCSVKL-FQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF 319 (562)
T ss_dssp CH------------------HHHHHH-HHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS
T ss_pred cH------------------HHHHHH-HHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec
Confidence 32 222211 1111 12366666666666665555554 4444444444544444 22
Q ss_pred C-cccC---CCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccc--cch
Q 005410 371 P-EGLC---EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGK--ISK 444 (698)
Q Consensus 371 ~-~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 444 (698)
| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|++++. .|.
T Consensus 320 p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 320 SKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp CHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred ChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 2 1111 1246777888777765332 125678888888888888888888888888889999988888863 356
Q ss_pred hhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCC
Q 005410 445 SISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN 523 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 523 (698)
.+..+++|++|++++|++++.+| ..+..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 68888999999999999987455 4578899999999999999877776554 79999999999999 67777779999
Q ss_pred CCEEeCCCCcCcccCCcc-cCCCCCCcEEeCCCCcCcccCc
Q 005410 524 INELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 524 L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|++|+|++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 475 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999999999 56655 9999999999999999998655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.3e-41 Score=359.16 Aligned_cols=387 Identities=19% Similarity=0.205 Sum_probs=257.1
Q ss_pred EEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC-CccccCCCCCCEEEccC
Q 005410 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI-PESLTRLTKLKNLDLSF 244 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~ 244 (698)
.++.+++.++. +|. + .++|++|++++|.++ ...|..++++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCccc-CCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45555555542 222 1 145666666666555 233445555556666666655554332 34455555555555555
Q ss_pred CCCcccCCccccCCCCCceeeccCCcceeccCcc--ccccccccccccCCCccccccCCccccccccEEEccCccccccC
Q 005410 245 NGLTGSIPSSITEMKSIEQIELFKNSLSGELPVK--WVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTL 322 (698)
Q Consensus 245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 322 (698)
|.+++..|..+..+++|++|++++|.+++..+.. +..+++ |++|++++|.+.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-----------------------L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-----------------------LEMLVLRDNNIKKIQ 145 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-----------------------CCEEECCSSBCCSCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc-----------------------CCEEECCCCccCccC
Confidence 5555555555555555555555555554432222 333444 444444444444443
Q ss_pred Chh-ccCCCCCCEEEccCCcCCcCCCccccCC--CCCCEEEcccCccceecCcc--------cCCCCCCCEEeccCCcCc
Q 005410 323 PES-IARSKNLSELKLFNNKLRGGLPSELGKY--SPLTTLDLSYNQFSGEIPEG--------LCEKGSLEDLVLIYNSFS 391 (698)
Q Consensus 323 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~ 391 (698)
|.. +..+++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 433 5556666666666666666555555443 45666666666665433322 224456666666666666
Q ss_pred ccCCccccCC---CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhc--CCCCCeeeccCccceeec
Q 005410 392 GKIPQSLGKC---RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISG--ANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 392 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~ 466 (698)
+..|..+... ++|+.|++++|...+... ..+.+....+..+.. .++|+.|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccc
Confidence 5555544433 566666666665543211 111122222222332 368999999999999999
Q ss_pred CccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
|..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+++..|..+.++++|++|+|++|++++..|..|..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 99999999999999999999999899999999999999999999988899999999999999999999988899999999
Q ss_pred CCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhcC
Q 005410 547 VLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEMY 594 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~~ 594 (698)
+|++|++++|++++..+..+..++ |++|++++|+++|.||.. |+..|.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 999999999999988877788887 999999999999999954 555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=358.10 Aligned_cols=364 Identities=18% Similarity=0.166 Sum_probs=268.4
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCccc-CccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGA-IPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888877777888888888888888877643 356778888888888888888877777888888888888
Q ss_pred ccCcccCCccccc--ccCcCCCcEeeccCCCCCCCCCccc-ccCCCCCCEEEcccCCCCCcCCccccCC--CCCCEEEcc
Q 005410 169 LFNNLLNGTISSS--LGNISTLKELRLAYNPFQPGQLPSQ-LSNLTNLEYLWLSGCNLLGEIPESLTRL--TKLKNLDLS 243 (698)
Q Consensus 169 L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~ 243 (698)
+++|.+++..+.. +..+++|++|++++|.++ ...|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 8888887644433 778888888888888877 333444 7778888888888888887777777665 678888888
Q ss_pred CCCCcccCCcc--------ccCCCCCceeeccCCcceeccCcccccc---ccccccccCCCccccccCCccccccccEEE
Q 005410 244 FNGLTGSIPSS--------ITEMKSIEQIELFKNSLSGELPVKWVNM---TTLLRFDASMNQLTGTIPNELCELQLESLN 312 (698)
Q Consensus 244 ~n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 312 (698)
+|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++++.+++++|...+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------ 256 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------ 256 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc------------
Confidence 88877544433 2356788888888888887777766554 777777877776553211
Q ss_pred ccCccccccCChhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcC
Q 005410 313 LYENRLEGTLPESIA--RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSF 390 (698)
Q Consensus 313 l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 390 (698)
..+.+.+..+..+. ..++|+.|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 11111111111222 235778888888888777777777788888888888888777777777788888888888888
Q ss_pred cccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecC
Q 005410 391 SGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77777777788888888888888877777778888888888888888877666667778888888888888876665
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-39 Score=343.86 Aligned_cols=371 Identities=26% Similarity=0.299 Sum_probs=218.1
Q ss_pred CCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEee
Q 005410 113 CRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELR 192 (698)
Q Consensus 113 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 192 (698)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+|+.+++++|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 47788888888888 57788888888888888888888888888888877764444443321 2455666
Q ss_pred ccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcce
Q 005410 193 LAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS 272 (698)
Q Consensus 193 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (698)
+++|.++ .+|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.++
T Consensus 78 l~~~~l~--~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 78 LNNLGLS--SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CTTSCCS--CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred ecCCccc--cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 6666555 23331 2456666666666654 3322 3556666666666553 2211 145666666666665
Q ss_pred eccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccC
Q 005410 273 GELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGK 352 (698)
Q Consensus 273 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 352 (698)
+ +| .+..+++|+.|++++|++++ +|.... +|++|++++|.+.+ +| .+..+++|+.|++++|++++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~--~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPP--SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcc--cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 4 44 36666666666666666653 333221 67777777777774 44 46777778888888877775 3332
Q ss_pred CCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEE
Q 005410 353 YSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 432 (698)
.++|++|++++|.++ .+| .+..+++|++|++++|.+.+ +|.. +++|++|++++|.+++ +|.. .++|+.|+
T Consensus 214 ~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 246778888887777 555 37777778888888777764 3332 3677788888877775 3332 36777788
Q ss_pred ccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCcccc
Q 005410 433 LADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 512 (698)
+++|.+++... ..++|+.|++++|++++. +. ..++|++|++++|++.+ +|.. +++|++|++++|++++
T Consensus 284 ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 284 VSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp CCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 87777765311 125777788888777642 21 12577788888877775 4432 4677888888887773
Q ss_pred ccchhhhccCCCCEEeCCCCcCcc--cCCcccCCC
Q 005410 513 GIPEGIESWKNINELNLANNRLSG--EIPSEIGNL 545 (698)
Q Consensus 513 ~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l 545 (698)
+|. .+++|++|++++|++++ .+|.++..+
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 454 46778888888888876 566665544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.3e-39 Score=340.38 Aligned_cols=422 Identities=25% Similarity=0.285 Sum_probs=203.6
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
+++.+++++|.+ +.+|..++++++|++|++++|.+.+..|..++++++|+.++++.|.. .++++|+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELELN 79 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEECT
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEec
Confidence 444555555555 44455555555555555555555555555555544431111111100 123556666
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+++ +|. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .++.. .++|++|++++|++++
T Consensus 80 ~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~--~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 80 NLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK--ALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS--CCCSC---CTTCCEEECCSSCCSS-
T ss_pred CCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC--cccCC---CCCCCEEECcCCCCCC-
Confidence 555553 222 12455666666665554 3322 245666666666555 22221 1456666666666654
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc
Q 005410 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL 306 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 306 (698)
+| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|... .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~ 215 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--L 215 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--T
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--C
Confidence 34 36666666666666666653 33322 356666666666654 33 45666666666666666653 23221 2
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 386 (698)
+|++|++++|.+. .+|. +..+++|++|++++|++++ +|. ..++|++|++++|++++ +|.. .++|++|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 6777888888777 5553 7778888888888888875 333 23678888888888775 4432 3678888888
Q ss_pred CCcCcccCCccccCCCCCcEEEccCccCcCccCccccCC-CCCCEEEccCCccccccchhhhcCCCCCeeeccCccceee
Q 005410 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGL-PHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGS 465 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (698)
+|.+.+.. . -.++|++|++++|.+++.. .+ ++|+.|++++|++++ +|.. +++|++|++++|+++ .
T Consensus 286 ~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 286 ENIFSGLS-E---LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E 351 (454)
T ss_dssp SSCCSEES-C---CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CCccCccc-C---cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence 88877531 1 1257888888888777421 23 478888888888775 3332 467888888888877 3
Q ss_pred cCccccccCCceEEECCCCccee--cccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc--cCCcc
Q 005410 466 IPDEVGLLSNLVEFSGDGNKFAG--QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG--EIPSE 541 (698)
Q Consensus 466 ~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~ 541 (698)
+|. .+++|++|++++|++.+ .+|..+. +++.|.+.+.+|.. +++|++|++++|++++ .+|.
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~- 416 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE- 416 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC----------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc---cCcCCEEECCCCcCCccccchh-
Confidence 554 46778888888888776 4554433 23446666666653 4789999999999986 5554
Q ss_pred cCCCCCCcEEeCCCCcCcccCcccccc
Q 005410 542 IGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 542 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
+++.|++.+|.+.+..|.....
T Consensus 417 -----sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 417 -----SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ---------------------------
T ss_pred -----hHhheeCcCcccCCccccCHHH
Confidence 4677888999988776655443
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-39 Score=328.85 Aligned_cols=291 Identities=29% Similarity=0.475 Sum_probs=255.1
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc--ccccccCCCC--CcEEEEECCCCCCCc--CCCccccCCCCCC
Q 005410 20 SLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCH--WRGVSCDPLT--QRVTSVNLSQSQLSG--PFPIFFCRLPYLA 93 (698)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~--~~g~~c~~~~--~~v~~L~l~~~~l~~--~~~~~~~~l~~L~ 93 (698)
+.++|++||++||.++.+|. .+.+|+... +||. |.||+|+... ++|++|+++++.+.+ .+|..|.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~--~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTT--DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTS--CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCCC--CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 56789999999999998876 688998754 7898 9999998644 799999999999999 8899999999999
Q ss_pred EEECCC-CCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005410 94 QLSLYN-NYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 94 ~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
+|++++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..|..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccCcC-CCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccC
Q 005410 173 LLNGTISSSLGNIS-TLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSI 251 (698)
Q Consensus 173 ~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (698)
.+++.+|..+..++ +|++|++++|.++ +.+|..+..++ |++|++++|.+.+..|..+..+++|+.|++++|.+++..
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 99988999999988 9999999999987 67788888887 999999999999888888999999999999999998665
Q ss_pred CccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc-cccEEEccCcc
Q 005410 252 PSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENR 317 (698)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 317 (698)
+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.. ..+ +|+.+++++|.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55 778889999999999998888888888888888888888887766654 222 45555555554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=336.83 Aligned_cols=344 Identities=19% Similarity=0.156 Sum_probs=277.0
Q ss_pred CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCcc
Q 005410 238 KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENR 317 (698)
Q Consensus 238 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 317 (698)
+.++.+++.++ .+|..+. +.++.|++++|.+++..+..|..+++|+.|+++ +|.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----------------------~n~ 67 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELN-----------------------ENI 67 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-----------------------TSC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECC-----------------------CCc
Confidence 46777777666 4454432 466777777777766555555555555555554 454
Q ss_pred ccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCcc
Q 005410 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQS 397 (698)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 397 (698)
+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 68 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh
Confidence 55455666777788888888888887666666778888888888888888777778888888888888888888777788
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005410 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 88888888888888888877777788888888888888888887777888888999999998887777777766677999
Q ss_pred EEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCc
Q 005410 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
+|++++|.+....+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999986666788999999999999999998888889999999999999999999889999999999999999999
Q ss_pred CcccCcccccccc-cCeEEcccCcCcccCChhhhhhcC-CcccCCCCCCCCC
Q 005410 558 FSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMY-RGSFLGNPGLCGD 607 (698)
Q Consensus 558 l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~-~~~~~~n~~~c~~ 607 (698)
+++..+..|..++ |++|++++|++.|.|+..|+..+. ...+.++...|..
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 9988888888887 999999999999999988776543 2455677777754
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.4e-37 Score=325.74 Aligned_cols=362 Identities=19% Similarity=0.194 Sum_probs=212.7
Q ss_pred cCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccC
Q 005410 105 SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGN 184 (698)
Q Consensus 105 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 184 (698)
..+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3344566777777777777777754 4 577777777777777777753 3 66777777777777777654 2 666
Q ss_pred cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcee
Q 005410 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQI 264 (698)
Q Consensus 185 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 264 (698)
+++|++|++++|.++ .++ ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++|
T Consensus 105 l~~L~~L~L~~N~l~--~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLT--KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCS--CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCC--eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 677777777777666 233 56666666666666666653 2555666666666666433232 24444444444
Q ss_pred eccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCc
Q 005410 265 ELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRG 344 (698)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 344 (698)
++++|.+++ +| +..+++|+.|++++|++++
T Consensus 176 ~ls~n~l~~------------------------------------------------l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 176 DCSFNKITE------------------------------------------------LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECCSSCCCC------------------------------------------------CC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccce------------------------------------------------ec--cccCCCCCEEECcCCcCCe
Confidence 444444432 11 2233444444444444443
Q ss_pred CCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccC
Q 005410 345 GLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG 424 (698)
Q Consensus 345 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 424 (698)
. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+.. +..+++|+.|+++.|
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------------ 264 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------------ 264 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------------
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------------
Confidence 2 14444455555555555543 22 444455555555555554432 233455555555443
Q ss_pred CCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEE
Q 005410 425 LPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD 504 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 504 (698)
+|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|+
T Consensus 265 --~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~ 324 (457)
T 3bz5_A 265 --DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLY 324 (457)
T ss_dssp --CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEE
T ss_pred --CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEE
Confidence 23445555555554444 34556667777777666555553 2344444444433 5777888
Q ss_pred cccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcc
Q 005410 505 LSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 505 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~ 583 (698)
+++|++++. + +..+++|++|++++|++++ ++.|+.|++++|.++|. + .+. +..+++++|.++|
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~----~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G----QTITMPKETLTNNSLTI 388 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E----EEEECCCBCCBTTBEEE
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c----eeeecCccccccCcEEE
Confidence 888888764 2 7777888888888888874 24566777888888765 1 222 7777888888888
Q ss_pred cCChhhh
Q 005410 584 ELPPLYA 590 (698)
Q Consensus 584 ~~~~~~~ 590 (698)
.+|..++
T Consensus 389 ~ip~~~~ 395 (457)
T 3bz5_A 389 AVSPDLL 395 (457)
T ss_dssp ECCTTCB
T ss_pred EcChhHh
Confidence 8886544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.1e-37 Score=324.56 Aligned_cols=358 Identities=22% Similarity=0.202 Sum_probs=210.4
Q ss_pred CccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCC
Q 005410 83 PIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFT 162 (698)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 162 (698)
+..+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. | +..+++|++|++++|.+++. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 34566677777788877777764 3 577777888888888877764 3 77777888888888877754 2 77778
Q ss_pred CccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEc
Q 005410 163 QLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDL 242 (698)
Q Consensus 163 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 242 (698)
+|++|++++|.+++. + ++.+++|++|++++|.++. ++ ++.+++|++|++++|...+.+ .+..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 888888888877763 2 7777888888888887772 32 677788888888888555444 3677888888888
Q ss_pred cCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccC
Q 005410 243 SFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTL 322 (698)
Q Consensus 243 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 322 (698)
++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++| ++++ +
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N-----------------------~l~~-i 227 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN-----------------------KLTE-I 227 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS-----------------------CCSC-C
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC-----------------------cccc-c
Confidence 8888875 33 67777788887777777643 2334444444433333 3332 2
Q ss_pred ChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCC
Q 005410 323 PESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCR 402 (698)
Q Consensus 323 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 402 (698)
| +..+++|+.|++++|++++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| +..++
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCT
T ss_pred C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccc
Confidence 2 444556666666666665432 334455555555543 23445555555444433 34455
Q ss_pred CCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECC
Q 005410 403 SLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGD 482 (698)
Q Consensus 403 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 482 (698)
+|+.|++++|...+.+|. ..++|+.+++++| ++|++|++++|++++. + +..+++|+.|+++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV 347 (457)
T ss_dssp TCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred cCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence 555555555554444332 2233333333322 3455555555555432 1 4444555555555
Q ss_pred CCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc
Q 005410 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS 540 (698)
Q Consensus 483 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 540 (698)
+|++.+ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|.
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 554442 13344444555544433 2333444444555554444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-36 Score=320.88 Aligned_cols=346 Identities=27% Similarity=0.358 Sum_probs=169.5
Q ss_pred CCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEe
Q 005410 112 TCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKEL 191 (698)
Q Consensus 112 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 191 (698)
.++++++|+++++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35667777777777663 33 26667777777777777664433 6666777777777776665443 6666666666
Q ss_pred eccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc
Q 005410 192 RLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL 271 (698)
Q Consensus 192 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 271 (698)
++++|.++ .++. +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+
T Consensus 118 ~L~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQIT--DIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCC--CCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC--CChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 66666655 2232 55566666666666555532 1 24555555555553 2222111 133333343333333333
Q ss_pred eeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCcccc
Q 005410 272 SGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELG 351 (698)
Q Consensus 272 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 351 (698)
.+. ..+..+++|++|++++|.+.+..+ ++
T Consensus 190 ~~~-------------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 190 SDI-------------------------------------------------SVLAKLTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp CCC-------------------------------------------------GGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred CCC-------------------------------------------------hhhccCCCCCEEEecCCccccccc--cc
Confidence 211 113334444444444444443322 33
Q ss_pred CCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005410 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 352 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
.+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 444444455444444321 123334444444444444433222 3344444444444444443222 3344444444
Q ss_pred EccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccc
Q 005410 432 ELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELS 511 (698)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 511 (698)
++++|++.+..+ +..+++|+.|++++|.+.+..| +..+++|++|++++|.++
T Consensus 293 ~L~~n~l~~~~~--------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 293 ELNENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCSCCGG--------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 444444433222 3344444444444444443333 344555555555555554
Q ss_pred cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcc
Q 005410 512 GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 512 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
+. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 33 244555555555555555554443 4555555555555555554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-35 Score=318.70 Aligned_cols=342 Identities=24% Similarity=0.354 Sum_probs=178.6
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
+++.|++.++.+... + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 466666666666543 2 35666667777777666665543 6666666666666666664443 6666666666666
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+.+..+ +..+++|++|++++|.+++.. .+..+++|++|++++ .+. .++ .+.++++|++|++++|.+.+.
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~--~~~-~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVT--DLK-PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCC--CCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-ccc--Cch-hhccCCCCCEEECcCCcCCCC
Confidence 666664322 666666666666666665432 355666666666642 222 112 255556666666666655433
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccc
Q 005410 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL 306 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 306 (698)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..++
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~----------------------- 243 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT----------------------- 243 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT-----------------------
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCC-----------------------
Confidence 234555555555555555553322 44445555555555544321 1222233
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 386 (698)
+|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 33333333333332221 4445555555555555554322 4455555555555555543322 4445555555555
Q ss_pred CCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce
Q 005410 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
+|.+.+..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555544333 44455555555555555443 234455555555555555544443 444555555555555554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=323.58 Aligned_cols=350 Identities=20% Similarity=0.167 Sum_probs=265.3
Q ss_pred CCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCC
Q 005410 213 LEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM 292 (698)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 292 (698)
-+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357788888877 455544 36899999999999988889999999999999999999988888888888887777777
Q ss_pred CccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCc
Q 005410 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPE 372 (698)
Q Consensus 293 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 372 (698)
|.+++. .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+.
T Consensus 90 n~l~~~-----------------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 90 NRLKLI-----------------------PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp SCCCSC-----------------------CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred CcCCcc-----------------------CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 766632 233455666777777777777766666677777777777777777766666
Q ss_pred ccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCC
Q 005410 373 GLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNL 452 (698)
Q Consensus 373 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 452 (698)
.|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 77777777777777777776655667777777777777777777777777777788888887777766666655556678
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005410 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 532 (698)
++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 88888888887544456778888888888888888777777888888888888888888888888888888888888888
Q ss_pred cCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChh
Q 005410 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
++++..+..|..+++|++|+|++|++.+..+.....-....+++.++...|..|..
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence 88876667788888888888888888764432111101344566777777777754
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.8e-35 Score=305.95 Aligned_cols=333 Identities=19% Similarity=0.132 Sum_probs=243.7
Q ss_pred CCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEc
Q 005410 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNL 313 (698)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 313 (698)
+++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|+.| ++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-----------------------~L 100 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL-----------------------YM 100 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEE-----------------------EC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEE-----------------------EC
Confidence 4666677776666664444445666666666666666665544455555555554 55
Q ss_pred cCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCccc
Q 005410 314 YENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 393 (698)
++|.+.+..|..+..+++|++|++++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 55555544555566667777777777777755444556777777777777777766666677777777777777777654
Q ss_pred CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccccc
Q 005410 394 IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLL 473 (698)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 473 (698)
.+..+++|+.|++++|.+++. ...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCC
Confidence 245567777788877776632 3345788888888887654222 246788888888888753 567888
Q ss_pred CCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeC
Q 005410 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDL 553 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 553 (698)
++|++|++++|.+.+..|..+..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 899999999999988888889999999999999999985 4666678899999999999998 67777888999999999
Q ss_pred CCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCcccCCCCCCCCC
Q 005410 554 SGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRGSFLGNPGLCGD 607 (698)
Q Consensus 554 s~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~n~~~c~~ 607 (698)
++|.++... +..++ |+.|++++|++.|.+...++..+....+.+++..|..
T Consensus 326 ~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCCccceeC---chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 999998653 44455 9999999999999988888888888888888888864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-34 Score=320.08 Aligned_cols=333 Identities=19% Similarity=0.135 Sum_probs=249.5
Q ss_pred CCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEc
Q 005410 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNL 313 (698)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 313 (698)
+++++.+++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++| ++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----------------------~~L~L 106 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI-----------------------QKLYM 106 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTC-----------------------CEEEC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCC-----------------------CEEEC
Confidence 4556666666666664444445556666666666666655555455555544 55555
Q ss_pred cCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCccc
Q 005410 314 YENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 393 (698)
++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 55555555555666777777777777777765555567777777777777777777777777777777777777777654
Q ss_pred CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccccc
Q 005410 394 IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLL 473 (698)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 473 (698)
.+..+++|+.|++++|.+++. ...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+
T Consensus 187 ---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 187 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred ---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccC
Confidence 245567788888888777642 34567888888888876543322 2578899999998875 4678888
Q ss_pred CCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeC
Q 005410 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDL 553 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 553 (698)
++|+.|++++|.+.+..|..+..+++|++|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|++|+|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 999999999999998888899999999999999999985 5667778899999999999999 67888889999999999
Q ss_pred CCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCcccCCCCCCCCC
Q 005410 554 SGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRGSFLGNPGLCGD 607 (698)
Q Consensus 554 s~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~n~~~c~~ 607 (698)
++|.+++.. +..++ |+.|++++|+|.|.|...|+..+....+.+++..|+.
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 999998764 34444 9999999999999998888888888888999999976
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.2e-34 Score=299.94 Aligned_cols=311 Identities=19% Similarity=0.156 Sum_probs=206.8
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEE
Q 005410 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESL 167 (698)
Q Consensus 88 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 167 (698)
.++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45788888888888877766667888888888888888887777788888888888888888887777778888888888
Q ss_pred EccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCC
Q 005410 168 SLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 168 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (698)
++++|.++...+..|.++++|++|++++|.+. ...+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888887655555677777777777777776 33345566677777777777766643 244556666666666655
Q ss_pred cccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhcc
Q 005410 248 TGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+ +...++|++|++++|.+... +... ..+|+.|++++|.+++. ..+.
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-------------------------~~~~-~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-------------------------RGPV-NVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-------------------------ECCC-CSSCCEEECCSSCCCCC--GGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-------------------------cccc-cccccEEECCCCCCccc--HHHc
Confidence 42 22233455555555544422 1100 01456666666666532 4566
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEE
Q 005410 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 677777777777777766677777777777777777777643 444456667777777777666 344455666677777
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCcccc
Q 005410 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG 440 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (698)
++++|.++... +..+++|+.|++++|++..
T Consensus 324 ~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 77777666442 4455666666666666653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-33 Score=308.48 Aligned_cols=311 Identities=19% Similarity=0.137 Sum_probs=207.2
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEE
Q 005410 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESL 167 (698)
Q Consensus 88 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 167 (698)
.+++++.+++++|.+....+..|..+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678888888888877777777788888888888888887777788888888888888888887777777888888888
Q ss_pred EccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCC
Q 005410 168 SLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 168 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (698)
++++|.+++..+..|.++++|++|++++|.++ ...|..++++++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 88888877666666677777777777777776 344556667777777777777766542 44556666666666655
Q ss_pred cccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhcc
Q 005410 248 TGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+ +....+|+.|++++|.+....+ ... .+|+.|++++|.+++ +..+.
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~------------------------~~~--~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG------------------------PVN--VELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC------------------------SCC--SCCCEEECCSSCCCC--CGGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc------------------------ccC--CCCCEEECCCCCCCC--Chhhc
Confidence 52 2233445555555554432211 100 145666666666654 25566
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEE
Q 005410 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. |..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 677777777777777776677777777777777777777643 444555667777777777666 445556666677777
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCcccc
Q 005410 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG 440 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (698)
++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 330 ~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 330 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 77776665442 4455566666666666553
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-33 Score=284.56 Aligned_cols=250 Identities=27% Similarity=0.401 Sum_probs=175.7
Q ss_pred CCCCEEEccCCcCCc--CCCccccCCCCCCEEEccc-CccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcE
Q 005410 330 KNLSELKLFNNKLRG--GLPSELGKYSPLTTLDLSY-NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRR 406 (698)
Q Consensus 330 ~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 406 (698)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888888777 6777777777788888874 7777777777777777777777777777777777777777777
Q ss_pred EEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCC-CCCeeeccCccceeecCccccccCCceEEECCCCc
Q 005410 407 VRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGAN-NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNK 485 (698)
Q Consensus 407 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 485 (698)
|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ .|++|++++|++++..|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777777777777777777777777777766676676666 677777777777766666666665 7777777777
Q ss_pred ceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCccc
Q 005410 486 FAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 486 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
+.+..|..+..+++|++|+|++|.+++.+|. +..+++|++|+|++|++++.+|..|..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 7666666666677777777777776655444 566666777777777776666666666666777777777766666654
Q ss_pred ccccc-cCeEEcccCcCc
Q 005410 566 LQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 566 ~~~~~-L~~L~ls~N~l~ 582 (698)
..++ |+.+++++|+.-
T Consensus 288 -~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -TTGGGSCGGGTCSSSEE
T ss_pred -ccccccChHHhcCCCCc
Confidence 3443 555666555533
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=280.95 Aligned_cols=307 Identities=26% Similarity=0.330 Sum_probs=168.9
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005410 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+++|++|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++. ++ ++..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 34566777777777766543 2 36677777777777777764433 7777777777777777764 22 467777777
Q ss_pred EEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005410 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
+|++++|.+++..+ +..+++|++|++++|... .. +..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCc-cc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 77777777764433 666777777777777544 12 2336666677777777666654433 556666666666666
Q ss_pred CCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChh
Q 005410 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPES 325 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 325 (698)
.+.+..+ +..+++|+.+++++|.+.+..+ +..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~------------------------------------------- 220 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANM------------------------------------------- 220 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGC-------------------------------------------
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcC-------------------------------------------
Confidence 6653222 4455555555555554442211 2222
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCc
Q 005410 326 IARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLR 405 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 405 (698)
++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 221 ----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 221 ----TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp ----TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ----CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 333333333333332211 33334444444444443321 2334444444444444444432 2344555555
Q ss_pred EEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce
Q 005410 406 RVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 406 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
+|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555555555555555666666666666555444 555666666666666553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-32 Score=279.72 Aligned_cols=306 Identities=24% Similarity=0.340 Sum_probs=158.2
Q ss_pred cCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc
Q 005410 183 GNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIE 262 (698)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 262 (698)
..+++|++|+++++.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++. + ..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~--~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA--SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccc--cchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 45566666666666655 2332 5555666666666665554322 5555666666666655553 1 2344444444
Q ss_pred eeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcC
Q 005410 263 QIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKL 342 (698)
Q Consensus 263 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 342 (698)
+|++++|.+.+..+ +..+++|+.|++++|..
T Consensus 114 ~L~l~~n~i~~~~~-------------------------------------------------~~~l~~L~~L~l~~n~~ 144 (347)
T 4fmz_A 114 ELYLNEDNISDISP-------------------------------------------------LANLTKMYSLNLGANHN 144 (347)
T ss_dssp EEECTTSCCCCCGG-------------------------------------------------GTTCTTCCEEECTTCTT
T ss_pred EEECcCCcccCchh-------------------------------------------------hccCCceeEEECCCCCC
Confidence 44444444432111 22333444444444432
Q ss_pred CcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccc
Q 005410 343 RGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMF 422 (698)
Q Consensus 343 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 422 (698)
....+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +
T Consensus 145 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~ 217 (347)
T 4fmz_A 145 LSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V 217 (347)
T ss_dssp CCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred ccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h
Confidence 22211 23444444444444444432211 3344444444444444442221 4445555555555555543332 4
Q ss_pred cCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCe
Q 005410 423 WGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGN 502 (698)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 502 (698)
..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 455555555555555544332 45555666666666655532 3455566666666666666543 24566677777
Q ss_pred EEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 503 LDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 503 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
|++++|.+++..++.+..+++|++|+|++|++++..| +..+++|++|++++|.++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777777766666667777777777777777765444 666677777777777664
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.4e-33 Score=281.83 Aligned_cols=274 Identities=20% Similarity=0.268 Sum_probs=229.9
Q ss_pred cccCCchHHHHHHHHHHhcC-CCCCCCCCCCC---CCCCCCCCcccccccCC--------CCCcEEEEECCCCCCCcCCC
Q 005410 16 LLTQSLNQDGLYLRRVKLGL-SDPTDSLASWD---DTRVDTPCHWRGVSCDP--------LTQRVTSVNLSQSQLSGPFP 83 (698)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~~C~~~g~~c~~--------~~~~v~~L~l~~~~l~~~~~ 83 (698)
...++..+++.||++||..+ .++.+....|. ... .++|.|.|+.|.. ...+|+.|+++++.++ .+|
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhccccccc-ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 34456778899999999877 45555456673 222 4789999999952 3468999999999998 667
Q ss_pred ccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccC---
Q 005410 84 IFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGE--- 160 (698)
Q Consensus 84 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--- 160 (698)
..+.++++|++|+|++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 77888999999999999998 77888999999999999999998 77888999999999999998888888887654
Q ss_pred ------CCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCC
Q 005410 161 ------FTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRL 234 (698)
Q Consensus 161 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 234 (698)
+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 889999999999888 66777888899999999999888 577778888999999999988888888888889
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccc
Q 005410 235 TKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296 (698)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 296 (698)
++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999998888888888888889999999988888888888888888888887766554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.2e-30 Score=266.94 Aligned_cols=266 Identities=23% Similarity=0.271 Sum_probs=146.5
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 386 (698)
.++.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4555566666555544445566666666666666666555556666666666666666655 3333332 456666666
Q ss_pred CCcCcccCCccccCCCCCcEEEccCccCcC--ccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcccee
Q 005410 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSG--SVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSG 464 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (698)
+|.+.+..+..+.++++|++|++++|.+.. ..+..|..+++|+.|++++|.++.. |..+. ++|++|++++|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCc
Confidence 666655555555566666666666665542 4445555566666666666655532 22221 455666666666555
Q ss_pred ecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCC
Q 005410 465 SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGN 544 (698)
Q Consensus 465 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 544 (698)
..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|++++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 55555555566666666666555555555555556666666666555 44555555556666666666665444444432
Q ss_pred ------CCCCcEEeCCCCcCcc--cCcccccccc-cCeEEcccC
Q 005410 545 ------LPVLNYLDLSGNLFSG--KIPLELQNLR-LNVLNLSNN 579 (698)
Q Consensus 545 ------l~~L~~L~Ls~N~l~~--~~p~~~~~~~-L~~L~ls~N 579 (698)
.+.++.|++++|++.. ..|..|..+. ++.+++++|
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2455556666665543 3344444444 555555555
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8.1e-31 Score=268.35 Aligned_cols=286 Identities=22% Similarity=0.266 Sum_probs=162.6
Q ss_pred cccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc
Q 005410 284 TLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 284 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 363 (698)
.++.++++++.++ .+|..+. ..++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3444444444444 2333222 1455666666666555555566666666666666666665566666666666666666
Q ss_pred CccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcC--ccCccccCCCCCCEEEccCCccccc
Q 005410 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSG--SVPEMFWGLPHMYLFELADNSFTGK 441 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (698)
|.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.++. ..+..|..+ +|+.|++++|.+++.
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 6665 3333332 566666666666665555556666666666666666642 445555555 666666666666542
Q ss_pred cchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhcc
Q 005410 442 ISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESW 521 (698)
Q Consensus 442 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 521 (698)
|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 188 -~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 188 -PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp -CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred -Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 22222 45666666666666555555666666666666666666555555666666666666666665 455556666
Q ss_pred CCCCEEeCCCCcCcccCCcccCCC------CCCcEEeCCCCcCc--ccCcccccccc-cCeEEcccC
Q 005410 522 KNINELNLANNRLSGEIPSEIGNL------PVLNYLDLSGNLFS--GKIPLELQNLR-LNVLNLSNN 579 (698)
Q Consensus 522 ~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~~~~~~-L~~L~ls~N 579 (698)
++|++|++++|++++..+..|... +.|+.|++++|++. +..|..+..++ |+.+++++|
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 666666666666665444444432 45566666666665 34555555555 666666655
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.7e-35 Score=312.91 Aligned_cols=382 Identities=20% Similarity=0.181 Sum_probs=209.1
Q ss_pred CCccEEEccCcccCCccccc-ccCcCCCcEeeccCCCCCCC---CCcccccCCCCCCEEEcccCCCCCcCCccc-cCCC-
Q 005410 162 TQLESLSLFNNLLNGTISSS-LGNISTLKELRLAYNPFQPG---QLPSQLSNLTNLEYLWLSGCNLLGEIPESL-TRLT- 235 (698)
Q Consensus 162 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~- 235 (698)
++|++|++++|.++...... +..+++|++|++++|.++.. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777766443322 55666777777777765521 234445556666666666666554332222 1233
Q ss_pred ---CCCEEEccCCCCcc----cCCccccCCCCCceeeccCCcceeccCccccc-----cccccccccCCCccccccCCcc
Q 005410 236 ---KLKNLDLSFNGLTG----SIPSSITEMKSIEQIELFKNSLSGELPVKWVN-----MTTLLRFDASMNQLTGTIPNEL 303 (698)
Q Consensus 236 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~ 303 (698)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-------------------- 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-------------------- 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC--------------------
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC--------------------
Confidence 46666666665552 22444455555555555555443322211111 11
Q ss_pred ccccccEEEccCcccccc----CChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCccc-CCCC
Q 005410 304 CELQLESLNLYENRLEGT----LPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGL-CEKG 378 (698)
Q Consensus 304 ~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~ 378 (698)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+ ...+
T Consensus 143 ---~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~ 199 (461)
T 1z7x_W 143 ---RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPC 199 (461)
T ss_dssp ---CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCC
T ss_pred ---cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCC
Confidence 233344444333321 1223333444444444444443322222211 00 0133
Q ss_pred CCCEEeccCCcCccc----CCccccCCCCCcEEEccCccCcCcc-----CccccCCCCCCEEEccCCccccc----cchh
Q 005410 379 SLEDLVLIYNSFSGK----IPQSLGKCRSLRRVRLRHNLLSGSV-----PEMFWGLPHMYLFELADNSFTGK----ISKS 445 (698)
Q Consensus 379 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 445 (698)
+|++|++++|.+... ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 455555555554432 2344455566666666666554322 22233466666666666666543 3455
Q ss_pred hhcCCCCCeeeccCccceeecCcccc-----ccCCceEEECCCCcceec----ccchhccCCCCCeEEcccCccccccch
Q 005410 446 ISGANNLSSLLVSRNNFSGSIPDEVG-----LLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGGIPE 516 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 516 (698)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 55667777777777766543333222 225777777777777654 455666778888888888888765555
Q ss_pred hhhc-----cCCCCEEeCCCCcCcc----cCCcccCCCCCCcEEeCCCCcCcccCccccc----c-c-ccCeEEcccCcC
Q 005410 517 GIES-----WKNINELNLANNRLSG----EIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ----N-L-RLNVLNLSNNRL 581 (698)
Q Consensus 517 ~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~-~-~L~~L~ls~N~l 581 (698)
.+.. .++|++|+|++|++++ .+|..+..+++|++|++++|++++.....+. . . +|+.|++.++.+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 4433 5688888888888875 6677777788888888888888764222222 1 1 277888888777
Q ss_pred cccCC
Q 005410 582 SGELP 586 (698)
Q Consensus 582 ~~~~~ 586 (698)
....+
T Consensus 440 ~~~~~ 444 (461)
T 1z7x_W 440 SEEME 444 (461)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.1e-30 Score=264.04 Aligned_cols=288 Identities=19% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEcc
Q 005410 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLF 170 (698)
Q Consensus 91 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 170 (698)
++++++++++.+.. +|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 46666666666543 33333 2456666666666655555555666666666666665555555555555555555555
Q ss_pred CcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc-
Q 005410 171 NNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG- 249 (698)
Q Consensus 171 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~- 249 (698)
+|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 111 ~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLVE--------------------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCCS--------------------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred CCcCCc--------------------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 555542 222222 344444444444444433444445555555555554431
Q ss_pred -cCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccC
Q 005410 250 -SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIAR 328 (698)
Q Consensus 250 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (698)
..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++ |.+.+..+..+..
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~-----------------------n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH-----------------------NKIQAIELEDLLR 215 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCS-----------------------SCCCCCCTTSSTT
T ss_pred CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCC-----------------------CcCCccCHHHhcC
Confidence 333333333 44444444444432 222111 2333333333 3333333333444
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccC------CC
Q 005410 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGK------CR 402 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~ 402 (698)
+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..|.. ..
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 444555555555554444444444555555555555544 34444445555555555555555444433332 24
Q ss_pred CCcEEEccCccCc--CccCccccCCCCCCEEEccCCc
Q 005410 403 SLRRVRLRHNLLS--GSVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 403 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 437 (698)
.|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5666666666665 4555666666777777666653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.2e-30 Score=261.19 Aligned_cols=245 Identities=22% Similarity=0.302 Sum_probs=120.6
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEcc
Q 005410 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLF 170 (698)
Q Consensus 91 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 170 (698)
++++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 46666666666543 232222 455566666665555555555555555555555555554445555555555555555
Q ss_pred CcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc-
Q 005410 171 NNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG- 249 (698)
Q Consensus 171 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~- 249 (698)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~--------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 109 KNQLK--------------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp SSCCS--------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCcCC--------------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 55444 2232222 455555555555555545555566666666666665542
Q ss_pred -cCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccC
Q 005410 250 -SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIAR 328 (698)
Q Consensus 250 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (698)
..+..+..+++|++|++++|.++. +|..+. + +|++|++++|.+.+..+..+..
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~-----------------------~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--P-----------------------SLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--T-----------------------TCSEEECTTSCCCEECTGGGTT
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--c-----------------------cCCEEECCCCcCCccCHHHhcC
Confidence 333444444455555444444431 111100 1 3344444444444344444445
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCccc
Q 005410 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 393 (698)
+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 555555555555555444444444555555555555444 3344444444444444444444433
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.9e-34 Score=305.04 Aligned_cols=262 Identities=20% Similarity=0.180 Sum_probs=197.8
Q ss_pred ChhccCCCCCCEEEccCCcCCcCCCcccc-----CCCCCCEEEcccCcccee----cCcccCCCCCCCEEeccCCcCccc
Q 005410 323 PESIARSKNLSELKLFNNKLRGGLPSELG-----KYSPLTTLDLSYNQFSGE----IPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 323 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 393 (698)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 45555666666666666666543333222 244677777777776653 244455667888888888887654
Q ss_pred CCcccc-----CCCCCcEEEccCccCcCc----cCccccCCCCCCEEEccCCccccccc-----hhhhcCCCCCeeeccC
Q 005410 394 IPQSLG-----KCRSLRRVRLRHNLLSGS----VPEMFWGLPHMYLFELADNSFTGKIS-----KSISGANNLSSLLVSR 459 (698)
Q Consensus 394 ~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~ 459 (698)
.+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+.+... ..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 443333 366999999999999874 46777889999999999999876432 2233589999999999
Q ss_pred ccceee----cCccccccCCceEEECCCCcceecccchhcc-----CCCCCeEEcccCccccc----cchhhhccCCCCE
Q 005410 460 NNFSGS----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK-----LSQLGNLDLSENELSGG----IPEGIESWKNINE 526 (698)
Q Consensus 460 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~ 526 (698)
|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 999864 5667778999999999999987655444433 36999999999999876 5667788899999
Q ss_pred EeCCCCcCcccCCcccCC-----CCCCcEEeCCCCcCcc----cCcccccccc-cCeEEcccCcCccc
Q 005410 527 LNLANNRLSGEIPSEIGN-----LPVLNYLDLSGNLFSG----KIPLELQNLR-LNVLNLSNNRLSGE 584 (698)
Q Consensus 527 L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~~~-L~~L~ls~N~l~~~ 584 (698)
|+|++|++++..+..+.. .++|++|++++|.+++ .+|..+...+ |++|++++|++++.
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 999999998755544432 6899999999999996 7788877777 99999999999865
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=269.09 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=231.6
Q ss_pred EEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCc
Q 005410 310 SLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS 389 (698)
Q Consensus 310 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 389 (698)
..+++++.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3566677776 4555443 588999999999887777788889999999999999988888888889999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCC-ccccccchhhhcCCCCCeeeccCccceeecC
Q 005410 390 FSGKIPQSLGKCRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADN-SFTGKISKSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 390 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
+.+..+..+.++++|++|++++|.+++..+ ..|..+++|++|++++| .+....+..+..+++|++|++++|.+.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 986666668889999999999999986555 57889999999999998 4666667788999999999999999998889
Q ss_pred ccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhh---hccCCCCEEeCCCCcCcc----cCCc
Q 005410 468 DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI---ESWKNINELNLANNRLSG----EIPS 540 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~----~~~~ 540 (698)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+ .....++.++|+++.+.+ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 999999999999999999875544456678999999999999987665544 346778899999998886 4678
Q ss_pred ccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhcC
Q 005410 541 EIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEMY 594 (698)
Q Consensus 541 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~~ 594 (698)
.+..+++|++||+++|+++...+..+..++ |++|++++|++.|.||.. |+..|.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 327 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHH
Confidence 889999999999999999955444467777 999999999999999843 554443
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.6e-29 Score=268.53 Aligned_cols=258 Identities=21% Similarity=0.132 Sum_probs=188.3
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCc
Q 005410 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHN 412 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 412 (698)
..++.++..++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 344444444442 333221 35556666666665555555666666666666666666555566666666666666666
Q ss_pred cCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCceEEECCCCcceeccc
Q 005410 413 LLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
.+++..+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..+..+++|++|++++|.+.+. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 666555556666666666666666666555566666777777777763 34433344577788888888888887744 3
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-
Q 005410 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR- 570 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~- 570 (698)
.+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 477889999999999999988899999999999999999999988899999999999999999999988888888887
Q ss_pred cCeEEcccCcCcccCChhhhhhcCC
Q 005410 571 LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 571 L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|+.|++++|+|.|.|...|+..|.+
T Consensus 292 L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp CCEEECCSSCEECSTTTHHHHHHHH
T ss_pred CCEEEccCCCcCCCCCchHHHHHHH
Confidence 9999999999999999887765543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=267.14 Aligned_cols=258 Identities=21% Similarity=0.156 Sum_probs=191.6
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCc
Q 005410 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHN 412 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 412 (698)
..++.++..++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 2333222 45566666666666555555666666666666666666555566666666666666666
Q ss_pred cCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCceEEECCCCcceeccc
Q 005410 413 LLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+.. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 666655556666677777777777766666666777777777777774 3443444567778888888888888773 34
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-
Q 005410 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR- 570 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~- 570 (698)
.+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 378889999999999999988899999999999999999999999999999999999999999999988888888887
Q ss_pred cCeEEcccCcCcccCChhhhhhcCC
Q 005410 571 LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 571 L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|+.|++++|+|.|.|...|+..|..
T Consensus 281 L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CCEEECCSSCEECSSTTHHHHHHHH
T ss_pred CCEEEcCCCCccCCCCchHHHHHHH
Confidence 9999999999999999888766654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-29 Score=256.65 Aligned_cols=259 Identities=24% Similarity=0.244 Sum_probs=180.9
Q ss_pred cEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCC
Q 005410 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYN 388 (698)
Q Consensus 309 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 388 (698)
+.++++++.++ .+|..+. ++|++|++++|+++...+..+..+++|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 45555555555 3333222 4555555555555544333445555555555555554422
Q ss_pred cCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecC
Q 005410 389 SFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
+..+..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+
T Consensus 68 ---~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 68 ---GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp ---EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred ---cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 111333444555555555555555 233445566666666666666655443 456667777777777777777777
Q ss_pred ccccccCCceEEECCCCccee-cccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 468 DEVGLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 777778888888888888876 5677888889999999999999888888889999999999999999877777888999
Q ss_pred CCcEEeCCCCcCcccCccccccc-c-cCeEEcccCcCcccCChhhhhhc
Q 005410 547 VLNYLDLSGNLFSGKIPLELQNL-R-LNVLNLSNNRLSGELPPLYAKEM 593 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~~~~~~ 593 (698)
+|++||+++|++++..|..+..+ + |++|++++|+++|.|+..++..|
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 99999999999999888888877 3 99999999999999986655444
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.4e-32 Score=303.64 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=58.9
Q ss_pred CCCCCEEEccCCccccccchhhhc-CCCCCeeecc----Cccceee-----cCccccccCCceEEECCCCc--ceecccc
Q 005410 425 LPHMYLFELADNSFTGKISKSISG-ANNLSSLLVS----RNNFSGS-----IPDEVGLLSNLVEFSGDGNK--FAGQIPG 492 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~ 492 (698)
+++|+.|++..|.+++.....+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 444555554444444433333332 4455555553 2333321 11123334455555554322 2222222
Q ss_pred hh-ccCCCCCeEEcccCccccc-cchhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCcEEeCCCCcCcc
Q 005410 493 SL-AKLSQLGNLDLSENELSGG-IPEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 493 ~~-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
.+ ..+++|++|++++|.+++. ++..+.++++|++|+|++|.+++. ++..+..+++|++|+|++|+++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 22 2245555555555555432 223334455555555555555432 22222345555555555555544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.4e-29 Score=252.52 Aligned_cols=276 Identities=20% Similarity=0.215 Sum_probs=199.2
Q ss_pred cccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcC--CCccccCCCCCCEEEccc
Q 005410 286 LRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 286 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~l~~ 363 (698)
+.++.+++.++ .+|..+. .++++|++++|.+....+..+..+++|++|++++|+++.. .+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcc-cCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 46778888877 4555443 3799999999999965555689999999999999999843 256667788889999988
Q ss_pred CccceecCcccCCCCCCCEEeccCCcCcccCC-ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005410 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
|.+.. +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ ..
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~ 142 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------------AF 142 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE------------------------CS
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc------------------------cc
Confidence 88873 45556666677777777766664433 345555555555555555544 44
Q ss_pred chhhhcCCCCCeeeccCcccee-ecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhcc
Q 005410 443 SKSISGANNLSSLLVSRNNFSG-SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESW 521 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 521 (698)
+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 4445555555666666665554 456667777777778888887777777778888889999999998887777788889
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCC-CCcEEeCCCCcCcccCcc--cccccc-cCeEEcccCcCcccCChh
Q 005410 522 KNINELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFSGKIPL--ELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 522 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~--~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
++|++|+|++|++++..|..+..++ +|++|++++|++++..+. ...-+. .+.+.+..+.+.|..|..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 9999999999999988888888885 899999999999875331 112222 455566677788777654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.9e-28 Score=245.06 Aligned_cols=215 Identities=22% Similarity=0.222 Sum_probs=141.3
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc-cccccchhhhcCCCCCeeec
Q 005410 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS-FTGKISKSISGANNLSSLLV 457 (698)
Q Consensus 379 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 457 (698)
++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444445555555555555554444455555555555555554 44444455555566666666
Q ss_pred cCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCccc
Q 005410 458 SRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537 (698)
Q Consensus 458 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 537 (698)
++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 66666655555666666677777777766655556677777888888888887766666677788888888888888877
Q ss_pred CCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhc
Q 005410 538 IPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEM 593 (698)
Q Consensus 538 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~ 593 (698)
.|..|..+++|++|++++|.+++..+..+..++ |+.|++++|++.|.|+..++..|
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 788888888888888888888877666677776 88888888888888886644333
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.4e-31 Score=294.38 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=148.3
Q ss_pred CChhccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccC-----------Cc
Q 005410 322 LPESIARSKNLSELKLFNNKLRGGLP-SELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY-----------NS 389 (698)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~ 389 (698)
+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 34445555666666666666543222 2245566666666663222222233334556677777762 34
Q ss_pred Cccc-CCccccCCCCCcEEEccCccCcCccCccccC-CCCCCEEEcc----CCccccc-----cchhhhcCCCCCeeecc
Q 005410 390 FSGK-IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG-LPHMYLFELA----DNSFTGK-----ISKSISGANNLSSLLVS 458 (698)
Q Consensus 390 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~ 458 (698)
+++. ++.....+++|++|++..|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 4432 2222345778888888777777665555544 7788888885 5566643 34446778899999997
Q ss_pred Ccc--ceeecCccc-cccCCceEEECCCCccee-cccchhccCCCCCeEEcccCccccc-cchhhhccCCCCEEeCCCCc
Q 005410 459 RNN--FSGSIPDEV-GLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGG-IPEGIESWKNINELNLANNR 533 (698)
Q Consensus 459 ~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 533 (698)
+|. +++..+..+ ..+++|++|++++|.+++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 543 554444333 347889999999998876 3455567889999999999998755 34455778999999999999
Q ss_pred CcccCCccc-CCCCCCcEEeCCCC
Q 005410 534 LSGEIPSEI-GNLPVLNYLDLSGN 556 (698)
Q Consensus 534 l~~~~~~~~-~~l~~L~~L~Ls~N 556 (698)
+++.-...+ ..+|.+....+..+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCHHHHHHHHHhCCCcEEEEecCc
Confidence 886433333 35666665555544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.7e-28 Score=258.83 Aligned_cols=240 Identities=23% Similarity=0.221 Sum_probs=150.7
Q ss_pred CcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 54 CHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 54 C~~~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
|.+.+++..+ .+.+++.|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+....+
T Consensus 61 c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 61 CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred ECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence 4444444333 23456666666666666666666666667777776666666666666666666677766666666656
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc-ccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN-LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNL 210 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l 210 (698)
..|..+++|++|+|++|.+....+..|..+++|++|++++| .+....+..|.++++|++|++++|.++ .+| .+..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMP-NLTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--SCC-CCTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--ccc-ccccc
Confidence 66666666666666666666555556666666666666663 343333445666666666666666665 333 35566
Q ss_pred CCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccccccc
Q 005410 211 TNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDA 290 (698)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 290 (698)
++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 66666666666666666666666666666666666666666666666666666666666666555555555666666666
Q ss_pred CCCccc
Q 005410 291 SMNQLT 296 (698)
Q Consensus 291 ~~n~l~ 296 (698)
++|.+.
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 666544
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.9e-29 Score=255.53 Aligned_cols=274 Identities=20% Similarity=0.221 Sum_probs=203.5
Q ss_pred ccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcc
Q 005410 287 RFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366 (698)
Q Consensus 287 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 366 (698)
..+.+++.++ .+|..+.. ++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 35 ~c~~~~~~l~-~iP~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLTE-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCS-SCCTTCCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcc-cccccccc-cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3445555555 34443332 677777777777765555777778888888888888777777777788888888888887
Q ss_pred ceecCcccCCCCCCCEEeccCCcCcccCC-ccccCCCCCcEEEccCc-cCcCccCccccCCCCCCEEEccCCccccccch
Q 005410 367 SGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHN-LLSGSVPEMFWGLPHMYLFELADNSFTGKISK 444 (698)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 444 (698)
++..+..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|.+.+..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 75554457777888888888887775443 46777888888888887 46666667778888888888888888877777
Q ss_pred hhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchh---ccCCCCCeEEcccCcccc----ccchh
Q 005410 445 SISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSL---AKLSQLGNLDLSENELSG----GIPEG 517 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~~~~ 517 (698)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ .....++.++++++.+++ .+|+.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 78888888888888888763333334557888888888888776544333 345678888898888876 36788
Q ss_pred hhccCCCCEEeCCCCcCcccCCcc-cCCCCCCcEEeCCCCcCcccCc
Q 005410 518 IESWKNINELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 518 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+..+++|++|+|++|+++ .+|.. |..+++|++|++++|++++..|
T Consensus 273 l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 899999999999999999 55655 6899999999999999998665
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=239.18 Aligned_cols=234 Identities=20% Similarity=0.188 Sum_probs=164.3
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCcc-CcCccCccccCCCCCCEEE
Q 005410 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL-LSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 354 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 432 (698)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|. +....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555444555555555666665555555555556666666666666665 5555555666666666666
Q ss_pred ccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCcccc
Q 005410 433 LADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 512 (698)
+++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666666666666667777777777777765555667777778888888887776666678888888888888888888
Q ss_pred ccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005410 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 513 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
..|..+..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+.. .... ++.+..+.+.+.|..|..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 88888888889999999999998766677888999999999999988654432 1112 566677888888888865
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=252.42 Aligned_cols=249 Identities=20% Similarity=0.238 Sum_probs=213.0
Q ss_pred ccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccC
Q 005410 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY 387 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 387 (698)
...++.++..++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456677777766 5555443 6788889999888888788888888999999999988877778888888999999999
Q ss_pred CcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc-cccccchhhhcCCCCCeeeccCccceeec
Q 005410 388 NSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS-FTGKISKSISGANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (698)
|.+....+..|..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|..+++|++|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 98887777788889999999999999988878888899999999998844 44445557888999999999999987 44
Q ss_pred CccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
| .+..+++|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 478899999999999999998899999999999999999999998899999999999999999999988888889999
Q ss_pred CCcEEeCCCCcCccc
Q 005410 547 VLNYLDLSGNLFSGK 561 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~ 561 (698)
+|+.|+|++|++...
T Consensus 280 ~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 280 HLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEcCCCCccCC
Confidence 999999999998763
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=242.86 Aligned_cols=225 Identities=21% Similarity=0.269 Sum_probs=136.5
Q ss_pred CCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEc
Q 005410 330 KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRL 409 (698)
Q Consensus 330 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 409 (698)
+.++.|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 56667777777666 44555666667777777777666 56666666667777777777666 55666667777777777
Q ss_pred cCccCcCccCcccc---------CCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEE
Q 005410 410 RHNLLSGSVPEMFW---------GLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFS 480 (698)
Q Consensus 410 ~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 480 (698)
++|.+.+.+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 77666666655443 3555666666655555 445555555666666666665552 344455555555555
Q ss_pred CCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 481 GDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 481 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|++|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2e-28 Score=248.49 Aligned_cols=265 Identities=20% Similarity=0.146 Sum_probs=204.2
Q ss_pred ccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccC
Q 005410 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY 387 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 387 (698)
++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555554444455566788888888888887777788888888888888888876554 77888888888888
Q ss_pred CcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecC
Q 005410 388 NSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
|.+.+.. ..++|++|++++|.+++..+. .+++|+.|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8887432 347888888888888866544 35778888888888888777788888889999999998887766
Q ss_pred ccc-cccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 468 DEV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 468 ~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
..+ ..+++|++|++++|.+++..+ ...+++|++|+|++|++++. |..+..+++|++|+|++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 665 468889999999998876522 33588999999999999854 445888899999999999998 5788888899
Q ss_pred CCcEEeCCCCcCc-ccCcccccccc-cCeEEcccC-cCcccCC
Q 005410 547 VLNYLDLSGNLFS-GKIPLELQNLR-LNVLNLSNN-RLSGELP 586 (698)
Q Consensus 547 ~L~~L~Ls~N~l~-~~~p~~~~~~~-L~~L~ls~N-~l~~~~~ 586 (698)
+|+.|++++|+++ +..|..+..++ |+.++++++ .+.+..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9999999999998 67777777776 888888744 4555433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-28 Score=249.43 Aligned_cols=245 Identities=22% Similarity=0.211 Sum_probs=134.5
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCC-cCCCcccc-------CCCCCCEEEcccCccceecCccc--CC
Q 005410 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLR-GGLPSELG-------KYSPLTTLDLSYNQFSGEIPEGL--CE 376 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~--~~ 376 (698)
+|+.+++++|.+ .+|..+... |+.|++++|++. ...|..+. .+++|++|++++|.+++.+|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 455566666665 444444322 555566665553 23333333 45555666666655555555543 45
Q ss_pred CCCCCEEeccCCcCcccCCccccCC-----CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCC
Q 005410 377 KGSLEDLVLIYNSFSGKIPQSLGKC-----RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANN 451 (698)
Q Consensus 377 ~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 451 (698)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+++..+..|..+++|++|++++|++.+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------- 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence 55555555555555544 4444444 555555555555554444455555555555555554433211
Q ss_pred CCeeeccCccceeecCccc--cccCCceEEECCCCccee---cccchhccCCCCCeEEcccCccccccc-hhhhccCCCC
Q 005410 452 LSSLLVSRNNFSGSIPDEV--GLLSNLVEFSGDGNKFAG---QIPGSLAKLSQLGNLDLSENELSGGIP-EGIESWKNIN 525 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 525 (698)
.|..+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..| ..+..+++|+
T Consensus 191 --------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 191 --------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp --------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred --------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 11122 445555566666655552 112334456677777777777766553 3445566777
Q ss_pred EEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcc
Q 005410 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 526 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~ 583 (698)
+|+|++|+++ .+|..+. ++|++||+++|++++. |. +..++ |++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7777777776 5666555 6677777777777755 44 55555 7777777777664
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.1e-27 Score=254.81 Aligned_cols=244 Identities=21% Similarity=0.154 Sum_probs=193.4
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 005410 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVR 408 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 408 (698)
+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888887777788888888888888888876655 778888888888888887543 237888888
Q ss_pred ccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc-ccCCceEEECCCCcce
Q 005410 409 LRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG-LLSNLVEFSGDGNKFA 487 (698)
Q Consensus 409 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 487 (698)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888876554 357888888888888888888888888888999998888887777765 6888899999988888
Q ss_pred ecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc-ccCcccc
Q 005410 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS-GKIPLEL 566 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 566 (698)
+..+ ...+++|++|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 6633 3458889999999999986544 48888999999999999984 7777888899999999999988 5666666
Q ss_pred cccc-cCeEEcc-------cCcCcccCC
Q 005410 567 QNLR-LNVLNLS-------NNRLSGELP 586 (698)
Q Consensus 567 ~~~~-L~~L~ls-------~N~l~~~~~ 586 (698)
..++ ++.++++ .|++.|.++
T Consensus 259 ~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 259 SKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HhCCCCcEEeccccccccCCCcccccCC
Confidence 6665 7777776 666666655
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.6e-26 Score=226.49 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=155.2
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeecc
Q 005410 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVS 458 (698)
Q Consensus 379 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 458 (698)
++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555556666666665555555556666666666666666665555666666677777777
Q ss_pred CccceeecCccccccCCceEEECCCCcceec-ccchhccCCCCCeEEcccCccccccchhhhccCCCC----EEeCCCCc
Q 005410 459 RNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQ-IPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN----ELNLANNR 533 (698)
Q Consensus 459 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~N~ 533 (698)
+|++.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+.+|+ +|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7776655555677777788888888877753 577888889999999999999887777887777777 89999999
Q ss_pred CcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005410 534 LSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 534 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
+++..+..+. ..+|++|++++|.+++..+..+..++ |++|++++|+++|.||.. |...|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 9966555554 45899999999999988777778887 999999999999999844 54444
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.2e-28 Score=244.79 Aligned_cols=250 Identities=22% Similarity=0.272 Sum_probs=188.3
Q ss_pred ccccccccccccCCCccccccCCccccccccEEEccCcccc-ccCChhcc-------CCCCCCEEEccCCcCCcCCCccc
Q 005410 279 WVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLE-GTLPESIA-------RSKNLSELKLFNNKLRGGLPSEL 350 (698)
Q Consensus 279 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~l 350 (698)
+...++|+.+++++|.+ .+|..+... ++.|++++|.+. ..+|..+. .+++|++|++++|++++..|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45678899999999999 667655554 899999999984 45666554 78999999999999998888876
Q ss_pred --cCCCCCCEEEcccCccceecCcccCCC-----CCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCc--cCcc
Q 005410 351 --GKYSPLTTLDLSYNQFSGEIPEGLCEK-----GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS--VPEM 421 (698)
Q Consensus 351 --~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 421 (698)
..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999977 7777665 8999999999999988889999999999999999998764 2333
Q ss_pred c--cCCCCCCEEEccCCccccc---cchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhcc
Q 005410 422 F--WGLPHMYLFELADNSFTGK---ISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK 496 (698)
Q Consensus 422 ~--~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 496 (698)
+ ..+++|++|++++|++++. ....+..+++|++|++++|++++..|. ..+..
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~~ 251 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------------------PSCDW 251 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------SCCCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------------------hhhhh
Confidence 3 7788888888888888732 223334556666666666666544321 22334
Q ss_pred CCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcc
Q 005410 497 LSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 497 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
+++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 556666666666666 4555444 6677777777777744 54 7777777777777777764
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.3e-30 Score=286.61 Aligned_cols=466 Identities=15% Similarity=0.123 Sum_probs=218.1
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCccc---CCcC------------CcCCCCCC
Q 005410 53 PCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSS---LPLD------------ISTCRNLT 117 (698)
Q Consensus 53 ~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~---~~~~------------~~~l~~L~ 117 (698)
|++|.++... ..+.+++...... .....+.++++|++|+++++..... .|.. ...+++|+
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4578777321 2335555544322 2234567788899999988753211 1111 13456666
Q ss_pred EEECCCCCCcccCccccC-CCCCCCEEECCCC-cCccc-CCcCccCCCCccEEEccCcccCCcccccc----cCcCCCcE
Q 005410 118 DLNLGSNLLVGAIPATLS-QLKNLKSLELQEN-NFTGD-IPASFGEFTQLESLSLFNNLLNGTISSSL----GNISTLKE 190 (698)
Q Consensus 118 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~ 190 (698)
+|++++|.+.+..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+..+ ..+++|++
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 666666666555444443 4666666666666 33321 22223356666666666666554333222 24445555
Q ss_pred eeccCCC--CCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccC
Q 005410 191 LRLAYNP--FQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFK 268 (698)
Q Consensus 191 L~l~~n~--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 268 (698)
|++++|. +....++....++++|++|++++|...+.++..+..+++|+.|+++.+... +..
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~ 251 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRP 251 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCH
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------cch
Confidence 5555554 110011111223455555555554221123344444555555554333210 111
Q ss_pred CcceeccCcccccccccccc-ccCCCccccccCCccccc-cccEEEccCcccccc-CChhccCCCCCCEEEccCCcCCcC
Q 005410 269 NSLSGELPVKWVNMTTLLRF-DASMNQLTGTIPNELCEL-QLESLNLYENRLEGT-LPESIARSKNLSELKLFNNKLRGG 345 (698)
Q Consensus 269 n~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~ 345 (698)
+.+.+ ++..+.++++|+.+ .+..... +.++..+... +|++|++++|.+++. +...+..+++|++|++++| +++.
T Consensus 252 ~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 252 DVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp HHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred hhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 12221 22244455555554 2221110 0111111111 344444444443321 1112334455555555544 2211
Q ss_pred -CCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccc-cCCCCCcEEEccCccCcCccCcccc
Q 005410 346 -LPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSL-GKCRSLRRVRLRHNLLSGSVPEMFW 423 (698)
Q Consensus 346 -~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 423 (698)
.+.....+++|++|++.++.-.| ....+.+++.....+ ..+++|++|.+..|.+++.....+.
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 11111234445555542211000 001122222111111 2255566665555555543333332
Q ss_pred -CCCCCCEEEcc--C----Ccccc-----ccchhhhcCCCCCeeeccCccceeecCccccc-cCCceEEECCCCcceecc
Q 005410 424 -GLPHMYLFELA--D----NSFTG-----KISKSISGANNLSSLLVSRNNFSGSIPDEVGL-LSNLVEFSGDGNKFAGQI 490 (698)
Q Consensus 424 -~l~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 490 (698)
.+++|+.|+++ + +.++. .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 35566666665 2 33331 1222355667777777765 444433333333 677777777777765544
Q ss_pred cchh-ccCCCCCeEEcccCccccccch-hhhccCCCCEEeCCCCcCcccCCccc-CCCCCCcEEeCCCCcCc
Q 005410 491 PGSL-AKLSQLGNLDLSENELSGGIPE-GIESWKNINELNLANNRLSGEIPSEI-GNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 491 ~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~ 559 (698)
...+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 4444 5677888888888887544333 33457788888888887754333333 45677766666655443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.8e-29 Score=279.15 Aligned_cols=380 Identities=16% Similarity=0.161 Sum_probs=207.3
Q ss_pred CCCccEEEccCcccCCccccccc-CcCCCcEeeccCC-CCCCCCCcccccCCCCCCEEEcccCCCCCcCCccc----cCC
Q 005410 161 FTQLESLSLFNNLLNGTISSSLG-NISTLKELRLAYN-PFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESL----TRL 234 (698)
Q Consensus 161 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l 234 (698)
+++|++|++++|.+++..+..+. .+++|++|++++| .++...++....++++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34444444444444433333332 3445555555444 22211122223344555555555555443322222 244
Q ss_pred CCCCEEEccCCC--Ccc-cCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEE
Q 005410 235 TKLKNLDLSFNG--LTG-SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESL 311 (698)
Q Consensus 235 ~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 311 (698)
++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|+.|+++.+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---------------- 247 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA---------------- 247 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC----------------
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC----------------
Confidence 566666666554 110 0111123346666666666522222445555566666665543321
Q ss_pred EccCccccccCChhccCCCCCCEE-EccCCcCCcCCCccccCCCCCCEEEcccCccceec-CcccCCCCCCCEEeccCCc
Q 005410 312 NLYENRLEGTLPESIARSKNLSEL-KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI-PEGLCEKGSLEDLVLIYNS 389 (698)
Q Consensus 312 ~l~~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~ 389 (698)
++..+.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus 248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 012222332 33456677777777 3333222 233444446678888888888765432 222456778888888877
Q ss_pred Cccc-CCccccCCCCCcEEEccC---------ccCcCccCccc-cCCCCCCEEEccCCccccccchhhh-cCCCCCeeec
Q 005410 390 FSGK-IPQSLGKCRSLRRVRLRH---------NLLSGSVPEMF-WGLPHMYLFELADNSFTGKISKSIS-GANNLSSLLV 457 (698)
Q Consensus 390 l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l 457 (698)
+... ++.....+++|++|++.+ +.+++.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 3322 222334578888888833 44543332223 3478888888888888766555554 5788888888
Q ss_pred c--C----ccceee-----cCccccccCCceEEECCCCcceecccchhcc-CCCCCeEEcccCccccccchhh-hccCCC
Q 005410 458 S--R----NNFSGS-----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK-LSQLGNLDLSENELSGGIPEGI-ESWKNI 524 (698)
Q Consensus 458 ~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 524 (698)
+ + +.++.. ++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 8 3 344421 112245677888888866 555444444444 7778888888888765544444 567788
Q ss_pred CEEeCCCCcCcccCCc-ccCCCCCCcEEeCCCCcCcc
Q 005410 525 NELNLANNRLSGEIPS-EIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 525 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++|+|++|.+++..+. ....+++|++|++++|+++.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 8888888887543332 33456778888888887753
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=220.71 Aligned_cols=218 Identities=23% Similarity=0.274 Sum_probs=190.0
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.|+.|... ..++.++++++.++. +|..+. +++++|+|++|.+.+..+.+|.++++|++|++++|.+....+
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 6899999988642 356789999999985 444443 689999999999998888899999999999999999998777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ ...+..+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCc
Confidence 88899999999999999999877788899999999999999999888888999999999999999988 33344578899
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceec
Q 005410 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGE 274 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 274 (698)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999988777889999999999999999977677788899999999999987643
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=242.21 Aligned_cols=263 Identities=17% Similarity=0.133 Sum_probs=216.5
Q ss_pred cccCCCccccccCCccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcc
Q 005410 288 FDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366 (698)
Q Consensus 288 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 366 (698)
.+++.+.+.......+... +|++|++++|.+.+..|..+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444443222222222 68888888888887777889999999999999999987654 88999999999999999
Q ss_pred ceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhh
Q 005410 367 SGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSI 446 (698)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 446 (698)
++.. ..++|++|++++|.+.+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 8543 3379999999999998765443 6789999999999999888899999999999999999998877766
Q ss_pred -hcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005410 447 -SGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 447 -~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
..+++|++|++++|.+++. +. ...+++|++|++++|.+.+..+ .+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred hhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 4789999999999999865 32 3358999999999999996544 5889999999999999999 5688899999999
Q ss_pred EEeCCCCcCc-ccCCcccCCCCCCcEEeCC-CCcCcccCcc
Q 005410 526 ELNLANNRLS-GEIPSEIGNLPVLNYLDLS-GNLFSGKIPL 564 (698)
Q Consensus 526 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls-~N~l~~~~p~ 564 (698)
+|+|++|.+. +.+|..+..++.|+.|+++ .+.+++..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999998 7788899999999999998 4456655544
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8e-26 Score=247.08 Aligned_cols=177 Identities=25% Similarity=0.324 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCCCccccccc------CCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCC
Q 005410 42 LASWDDTRVDTPCHWRGVSC------DPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRN 115 (698)
Q Consensus 42 ~~~w~~~~~~~~C~~~g~~c------~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 115 (698)
+..|.... ++|.|+|..| ......++.|+++++.++ .+|..+. ++|++|+|++|.++.+ |. .+++
T Consensus 12 w~~W~~~~--~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~ 82 (622)
T 3g06_A 12 WSAWRRAA--PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPE 82 (622)
T ss_dssp HHHHHHTC--CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTT
T ss_pred HHHHHhcC--CcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCC
Confidence 45576544 6788865432 111235778888888888 4454444 7888888888887743 33 4677
Q ss_pred CCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccC
Q 005410 116 LTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAY 195 (698)
Q Consensus 116 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 195 (698)
|++|+|++|.++. +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++. |.. +++|++|++++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSD 150 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCS
T ss_pred CCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcC
Confidence 8888888888774 343 56778888888877774 333 456777777777777643 322 36677777777
Q ss_pred CCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCc
Q 005410 196 NPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 196 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (698)
|.++ .+|. .+++|+.|++++|.+++. | ..+++|+.|++++|.++
T Consensus 151 N~l~--~l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 151 NQLA--SLPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp SCCS--CCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred CcCC--CcCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCC
Confidence 7665 3333 234566666666666542 2 33455666666666555
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5e-25 Score=217.97 Aligned_cols=205 Identities=23% Similarity=0.263 Sum_probs=153.8
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccC
Q 005410 380 LEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSR 459 (698)
Q Consensus 380 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 459 (698)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555442 333222 4556666666666555555566666666666666666655555556667777777777
Q ss_pred ccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCC
Q 005410 460 NNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIP 539 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 539 (698)
|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77765555666777888888888888877777778889999999999999987777778899999999999999997777
Q ss_pred cccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh
Q 005410 540 SEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP 587 (698)
Q Consensus 540 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~ 587 (698)
..|..+++|++|++++|.+++..+..+..++ |+.|++++|++.|.|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7899999999999999999987777788777 99999999999999983
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.1e-24 Score=235.96 Aligned_cols=147 Identities=24% Similarity=0.339 Sum_probs=91.4
Q ss_pred CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEEC
Q 005410 402 RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSG 481 (698)
Q Consensus 402 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 481 (698)
++|+.|++++|.+++. | ..+++|+.|++++|.+++. |. ..++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 161 ~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~L 228 (622)
T 3g06_A 161 SELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIV 228 (622)
T ss_dssp TTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEc
Confidence 3455555555555432 2 2345555555555555432 11 1245666666666665 2332 2366777777
Q ss_pred CCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCccc
Q 005410 482 DGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 482 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
++|.+++ +| ..+++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|..+.++++|+.|+|++|++++.
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 7777664 33 34567778888888777 3444 5677888888888887 6677788888888888888888877
Q ss_pred Cccccccc
Q 005410 562 IPLELQNL 569 (698)
Q Consensus 562 ~p~~~~~~ 569 (698)
.|..+..+
T Consensus 300 ~~~~l~~L 307 (622)
T 3g06_A 300 TLQALREI 307 (622)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHhc
Confidence 77766544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.1e-24 Score=216.51 Aligned_cols=209 Identities=24% Similarity=0.225 Sum_probs=162.8
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888777778888888888888888888777778888888888888888888777778888888888888
Q ss_pred cCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCC----EEEccCC
Q 005410 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLK----NLDLSFN 245 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 245 (698)
++|.+++..+..+..+++|++|++++|.++...+|..+.++++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 888888777767888888888888888887545778888888888888888888877666666666665 7888888
Q ss_pred CCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCcccccc
Q 005410 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 299 (698)
.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 88755444443 347888888888887665556677777777777777776543
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.2e-26 Score=243.40 Aligned_cols=225 Identities=19% Similarity=0.153 Sum_probs=197.7
Q ss_pred CCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005410 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 352 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
.+++|++|++++|.+++..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34489999999999998888899999999999999999997765 8999999999999999986543 3899999
Q ss_pred EccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhc-cCCCCCeEEcccCcc
Q 005410 432 ELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLA-KLSQLGNLDLSENEL 510 (698)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l 510 (698)
++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999987664 357899999999999988888999999999999999999998888876 799999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhh
Q 005410 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLY 589 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~ 589 (698)
++..+ ...+++|++|+|++|++++ +|..+..+++|+.|+|++|.+++ +|..+..++ |+.|++++|++.|.++..+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 97633 3468999999999999996 55569999999999999999996 666777777 9999999999997655444
Q ss_pred h
Q 005410 590 A 590 (698)
Q Consensus 590 ~ 590 (698)
+
T Consensus 258 ~ 258 (487)
T 3oja_A 258 F 258 (487)
T ss_dssp H
T ss_pred H
Confidence 4
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9e-25 Score=217.81 Aligned_cols=212 Identities=22% Similarity=0.193 Sum_probs=154.8
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCee
Q 005410 376 EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSL 455 (698)
Q Consensus 376 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 455 (698)
.++++++++++++.++. +|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 33444444444444442 222221 4555555555555555555555566666666666665543332 456777777
Q ss_pred eccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCc
Q 005410 456 LVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535 (698)
Q Consensus 456 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 535 (698)
++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777776 56667778888888888888888777788999999999999999999887788889999999999999999
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcC
Q 005410 536 GEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMY 594 (698)
Q Consensus 536 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~ 594 (698)
+..+..|..+++|++|+|++|+++ .+|..+.... |+.+++++|+|.|.|...|+..|.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl 220 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence 766677889999999999999999 4555555555 999999999999999766665553
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.7e-23 Score=204.77 Aligned_cols=203 Identities=21% Similarity=0.198 Sum_probs=142.8
Q ss_pred CCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005410 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 352 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
.++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3444444555444444 2232221 3455555555555554455555555555666655555543332 456666666
Q ss_pred EccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccc
Q 005410 432 ELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELS 511 (698)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 511 (698)
++++|++. .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 66666665 34555666777778888888777666677888888888888888888777777888999999999999999
Q ss_pred cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCccc
Q 005410 512 GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 512 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
+..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++...
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 776777788999999999999999 7888888889999999999999763
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.9e-23 Score=206.73 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=116.8
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005410 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34444455555555544432 2344555555555555555554444455555666666666666555555556666666
Q ss_pred EEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCc
Q 005410 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
+|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666666665555566677777777777777776666666777777777777777777666667777777777777777
Q ss_pred CcccCcccccccccCeEEcccCcCcccCChh
Q 005410 558 FSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 558 l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
+.+..|. ++.+++++|.++|.+|..
T Consensus 217 ~~~~~~~------l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 217 WDCTCPG------IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp BCCCTTT------THHHHHHHHHTGGGBBCT
T ss_pred ccccCcH------HHHHHHHHHhCCCcccCc
Confidence 7765442 666777777777777744
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.6e-23 Score=199.16 Aligned_cols=191 Identities=27% Similarity=0.261 Sum_probs=153.0
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+||.|.|.+|.. ..+.++++++.++.. |..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577999999953 345789999988854 44343 589999999999998888889999999999999999998888
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ ...+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCc
Confidence 88899999999999999998777778888889999999999888777777788888888888888877 23333577777
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc
Q 005410 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 78888887777777666677777777777777777664
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-22 Score=201.25 Aligned_cols=205 Identities=27% Similarity=0.277 Sum_probs=99.3
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEE
Q 005410 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESL 167 (698)
Q Consensus 88 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 167 (698)
.+++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 344444555554444321 1244445555555555544432 234445555555555555554444444455555555
Q ss_pred EccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCC
Q 005410 168 SLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 168 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (698)
++++|.+++..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555444444455555555555555444 22223344455555555555555544444445555555555555555
Q ss_pred cccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccc
Q 005410 248 TGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELC 304 (698)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 304 (698)
++..+..+..+++|+.|++++|.+.+. ++.++.++++.|.++|.+|..++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 544444455555555555555544422 33455555555555555554443
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-22 Score=198.60 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=144.1
Q ss_pred CcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005410 404 LRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 404 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
.++++++++.++. +|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4556666665553 332222 4666666666666666666666777777777777777766666677778888888888
Q ss_pred CcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88877777778888899999999999987777778889999999999999997777788999999999999999998888
Q ss_pred ccccccc-cCeEEcccCcCccc-CChhhhhhcC
Q 005410 564 LELQNLR-LNVLNLSNNRLSGE-LPPLYAKEMY 594 (698)
Q Consensus 564 ~~~~~~~-L~~L~ls~N~l~~~-~~~~~~~~~~ 594 (698)
..+..++ |+.|++++|+++|. |...++..|.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred HHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 7888877 99999999999998 5555555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-24 Score=226.90 Aligned_cols=246 Identities=22% Similarity=0.249 Sum_probs=122.8
Q ss_pred cCChhccCCCCCCEEEccCCcCCcCCCc----cccCCCCCCEEEcccCc---cceecCccc-------CCCCCCCEEecc
Q 005410 321 TLPESIARSKNLSELKLFNNKLRGGLPS----ELGKYSPLTTLDLSYNQ---FSGEIPEGL-------CEKGSLEDLVLI 386 (698)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~l~ 386 (698)
.++..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3445555666666777766666654332 24456666666666642 233333322 344455555555
Q ss_pred CCcCcc----cCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcC---------CCCC
Q 005410 387 YNSFSG----KIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGA---------NNLS 453 (698)
Q Consensus 387 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------~~L~ 453 (698)
+|.+.. .++..+..+++|++|++++|.++...+..+.. .+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCc
Confidence 555443 23334444445555555544443222221111 11122 4555
Q ss_pred eeeccCccce-eecC---ccccccCCceEEECCCCccee-----cccchhccCCCCCeEEcccCccc----cccchhhhc
Q 005410 454 SLLVSRNNFS-GSIP---DEVGLLSNLVEFSGDGNKFAG-----QIPGSLAKLSQLGNLDLSENELS----GGIPEGIES 520 (698)
Q Consensus 454 ~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~ 520 (698)
+|++++|+++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 5555555543 1222 233445555555555555541 22334555566666666666654 345555556
Q ss_pred cCCCCEEeCCCCcCccc----CCcccC--CCCCCcEEeCCCCcCcc----cCcccc-cccc-cCeEEcccCcCcccCC
Q 005410 521 WKNINELNLANNRLSGE----IPSEIG--NLPVLNYLDLSGNLFSG----KIPLEL-QNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 521 l~~L~~L~L~~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~~~-L~~L~ls~N~l~~~~~ 586 (698)
+++|++|+|++|++++. ++..+. .+++|++|+|++|.+++ .+|..+ ..++ |++|++++|++++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 66666666666666543 344442 25666666666666665 344444 3333 6666666666665554
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2e-24 Score=223.33 Aligned_cols=129 Identities=19% Similarity=0.143 Sum_probs=66.3
Q ss_pred EEccCccccccCChhccCCCCCCEEEccCCcCCcCCC----ccccCCC-CCCEEEcccCccceecCcccCCC-----CCC
Q 005410 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLP----SELGKYS-PLTTLDLSYNQFSGEIPEGLCEK-----GSL 380 (698)
Q Consensus 311 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 380 (698)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555555555556666666666665544 4455555 56666666666655444444332 555
Q ss_pred CEEeccCCcCcccCCccc----cCC-CCCcEEEccCccCcCccCccc----cC-CCCCCEEEccCCccc
Q 005410 381 EDLVLIYNSFSGKIPQSL----GKC-RSLRRVRLRHNLLSGSVPEMF----WG-LPHMYLFELADNSFT 439 (698)
Q Consensus 381 ~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~ 439 (698)
++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 555555555554433322 222 455555555555554333222 12 234555555555544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.4e-24 Score=221.63 Aligned_cols=255 Identities=20% Similarity=0.180 Sum_probs=204.6
Q ss_pred EEEccCCcCCcCCCccccCCCCCCEEEcccCccceecC----cccCCCC-CCCEEeccCCcCcccCCccccCC-----CC
Q 005410 334 ELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIP----EGLCEKG-SLEDLVLIYNSFSGKIPQSLGKC-----RS 403 (698)
Q Consensus 334 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 403 (698)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999888877777789999999999987766 6777888 89999999999998877777765 99
Q ss_pred CcEEEccCccCcCccCcc----ccCC-CCCCEEEccCCccccccchhhhc-----CCCCCeeeccCccceeecC----cc
Q 005410 404 LRRVRLRHNLLSGSVPEM----FWGL-PHMYLFELADNSFTGKISKSISG-----ANNLSSLLVSRNNFSGSIP----DE 469 (698)
Q Consensus 404 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~----~~ 469 (698)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998776664 4445 89999999999998776655543 3699999999999985433 33
Q ss_pred ccccC-CceEEECCCCcceecccchh----ccC-CCCCeEEcccCccccc----cchhhhc-cCCCCEEeCCCCcCcccC
Q 005410 470 VGLLS-NLVEFSGDGNKFAGQIPGSL----AKL-SQLGNLDLSENELSGG----IPEGIES-WKNINELNLANNRLSGEI 538 (698)
Q Consensus 470 ~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~ 538 (698)
+..++ +|++|++++|.+.+..+..+ ..+ ++|++|||++|.+++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44555 99999999999987766544 445 6999999999999863 4556655 459999999999998654
Q ss_pred C----cccCCCCCCcEEeCCCCcCcccCcc-------cccccc-cCeEEcccCcCcccCChh
Q 005410 539 P----SEIGNLPVLNYLDLSGNLFSGKIPL-------ELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 539 ~----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
+ ..+..+++|++|++++|.+....+. .+..++ |+.||+++|++....+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 4 4457889999999999996554333 445555 999999999998876644
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2e-24 Score=225.79 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=155.2
Q ss_pred CCccccCCCCCCEEEcccCccceecC----cccCCCCCCCEEeccCCcC---cccCCccccCCCCCcEEEccCccCcCcc
Q 005410 346 LPSELGKYSPLTTLDLSYNQFSGEIP----EGLCEKGSLEDLVLIYNSF---SGKIPQSLGKCRSLRRVRLRHNLLSGSV 418 (698)
Q Consensus 346 ~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 418 (698)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+ .+.+|..+. .+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------HH
Confidence 34445555666666666666654322 2234445555555554322 222222220 00
Q ss_pred CccccCCCCCCEEEccCCcccc----ccchhhhcCCCCCeeeccCccceeecCcc----cccc---------CCceEEEC
Q 005410 419 PEMFWGLPHMYLFELADNSFTG----KISKSISGANNLSSLLVSRNNFSGSIPDE----VGLL---------SNLVEFSG 481 (698)
Q Consensus 419 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l 481 (698)
...+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1123566667777777776665 35566777788888888888775433333 3333 89999999
Q ss_pred CCCcce-eccc---chhccCCCCCeEEcccCcccc-----ccchhhhccCCCCEEeCCCCcCc----ccCCcccCCCCCC
Q 005410 482 DGNKFA-GQIP---GSLAKLSQLGNLDLSENELSG-----GIPEGIESWKNINELNLANNRLS----GEIPSEIGNLPVL 548 (698)
Q Consensus 482 ~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L 548 (698)
++|++. ...+ ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 999997 3444 467789999999999999983 34447889999999999999996 5788889999999
Q ss_pred cEEeCCCCcCccc----Ccccccc--cc-cCeEEcccCcCcc----cCChhh
Q 005410 549 NYLDLSGNLFSGK----IPLELQN--LR-LNVLNLSNNRLSG----ELPPLY 589 (698)
Q Consensus 549 ~~L~Ls~N~l~~~----~p~~~~~--~~-L~~L~ls~N~l~~----~~~~~~ 589 (698)
++|+|++|.+++. +|..+.. .+ |++|++++|+++. .+|...
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 9999999999876 5566533 55 9999999999998 466544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-23 Score=215.81 Aligned_cols=249 Identities=18% Similarity=0.247 Sum_probs=178.6
Q ss_pred CCEEEccCCcCCcCCCccccCC--CCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCccc-CCccccCCCCCcEEE
Q 005410 332 LSELKLFNNKLRGGLPSELGKY--SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK-IPQSLGKCRSLRRVR 408 (698)
Q Consensus 332 L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 408 (698)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666665554 2334444 5666777777766655444 44567777777777776654 566677777788888
Q ss_pred ccCccCcCccCccccCCCCCCEEEccCC-ccccc-cchhhhcCCCCCeeeccCc-cceee-cCccccccC-CceEEECCC
Q 005410 409 LRHNLLSGSVPEMFWGLPHMYLFELADN-SFTGK-ISKSISGANNLSSLLVSRN-NFSGS-IPDEVGLLS-NLVEFSGDG 483 (698)
Q Consensus 409 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~ 483 (698)
+++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8877777667777777888888888887 56542 5566777888888888888 77653 456677788 888888888
Q ss_pred C--cce-ecccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCc-CcccCCcccCCCCCCcEEeCCCCcC
Q 005410 484 N--KFA-GQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNR-LSGEIPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 484 n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 558 (698)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+|++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 4566677888999999999998 777777888899999999999995 33222235788999999999999 3
Q ss_pred cccCccccccc-c-cCeEEcccCcCcccCChh
Q 005410 559 SGKIPLELQNL-R-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 559 ~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~ 588 (698)
+ ...+..+ . ++.|++++|++++..|..
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 3 2234444 2 788889999999877743
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.6e-22 Score=193.64 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=96.3
Q ss_pred CCCEEEcccCccceecCcccCCCCCCCEEeccCCc-CcccCCccccCCCCCcEEEccC-ccCcCccCccccCCCCCCEEE
Q 005410 355 PLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS-FSGKIPQSLGKCRSLRRVRLRH-NLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 432 (698)
++++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444433344444444444444443 4433334444555555555554 455444444455555555555
Q ss_pred ccCCccccccchhhhcCCCCC---eeeccCc-cceeecCccccccCCce-EEECCCCcceecccchhccCCCCCeEEccc
Q 005410 433 LADNSFTGKISKSISGANNLS---SLLVSRN-NFSGSIPDEVGLLSNLV-EFSGDGNKFAGQIPGSLAKLSQLGNLDLSE 507 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 507 (698)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.+....+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555443 222 44444444 5555555 55544444455555555 5555555555333333333 5555555555
Q ss_pred Cc-cccccchhhhcc-CCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCC
Q 005410 508 NE-LSGGIPEGIESW-KNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 508 n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 556 (698)
|+ +++..+..|.++ ++|++|+|++|++++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 53 554444555555 555555665555552 3322 3445555555544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.4e-22 Score=196.45 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=174.3
Q ss_pred ecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCcc-CcCccCccccCCCCCCEEEccC-Cccccccchhh
Q 005410 369 EIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL-LSGSVPEMFWGLPHMYLFELAD-NSFTGKISKSI 446 (698)
Q Consensus 369 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~ 446 (698)
.+|. + .+++++|++++|.+.+..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.++...+..|
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 3 3489999999999998888899999999999999997 8878888999999999999998 99998888889
Q ss_pred hcCCCCCeeeccCccceeecCccccccCCce---EEECCCC-cceecccchhccCCCCC-eEEcccCccccccchhhhcc
Q 005410 447 SGANNLSSLLVSRNNFSGSIPDEVGLLSNLV---EFSGDGN-KFAGQIPGSLAKLSQLG-NLDLSENELSGGIPEGIESW 521 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l 521 (698)
..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|+++...+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 999999999999999985 665 77888887 9999999 99888888899999999 9999999999544445555
Q ss_pred CCCCEEeCCCCc-CcccCCcccCCC-CCCcEEeCCCCcCcccCcccccccccCeEEcccCc
Q 005410 522 KNINELNLANNR-LSGEIPSEIGNL-PVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNR 580 (698)
Q Consensus 522 ~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~ 580 (698)
++|++|+|++|+ +++..+..|.++ ++|++|++++|++++..+..+.. |+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~--L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH--LKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT--CSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc--CceeeccCcc
Confidence 899999999995 997777889999 99999999999999655543332 8899988763
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.4e-23 Score=215.25 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=190.4
Q ss_pred ccEEEccCccccccCChhccCC--CCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee-cCcccCCCCCCCEEe
Q 005410 308 LESLNLYENRLEGTLPESIARS--KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE-IPEGLCEKGSLEDLV 384 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ 384 (698)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567777777665 2344444 6788888888888766555 45678888888888887755 666778888888888
Q ss_pred ccCCcCcccCCccccCCCCCcEEEccCc-cCcCc-cCccccCCCCCCEEEccCC-ccccc-cchhhhcCC-CCCeeeccC
Q 005410 385 LIYNSFSGKIPQSLGKCRSLRRVRLRHN-LLSGS-VPEMFWGLPHMYLFELADN-SFTGK-ISKSISGAN-NLSSLLVSR 459 (698)
Q Consensus 385 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~~ 459 (698)
+++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888888777777888888888888888 56653 5666778888999999888 77754 566678888 999999998
Q ss_pred c--cce-eecCccccccCCceEEECCCCc-ceecccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCcC
Q 005410 460 N--NFS-GSIPDEVGLLSNLVEFSGDGNK-FAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNRL 534 (698)
Q Consensus 460 n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 534 (698)
| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 3456667788999999999998 666777788888999999999985 33222235788899999999998 4
Q ss_pred cccCCcccCCC-CCCcEEeCCCCcCcccCcccccc
Q 005410 535 SGEIPSEIGNL-PVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 535 ~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
.. ..+..+ .+++.|++++|.+++..|..+..
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 32 233333 23667778999999888876654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=205.41 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=89.4
Q ss_pred CCCEEEcccCccceecCccc--CCCCCCCEEeccCCcCcccCC----ccccCCCCCcEEEccCccCcCccCccccCCCCC
Q 005410 355 PLTTLDLSYNQFSGEIPEGL--CEKGSLEDLVLIYNSFSGKIP----QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHM 428 (698)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 428 (698)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34445555444444444444 444445555555554443322 122345555555555555555555555555555
Q ss_pred CEEEccCCccccc--c--chhhhcCCCCCeeeccCccceeecCc----cccccCCceEEECCCCcceecccchhccC---
Q 005410 429 YLFELADNSFTGK--I--SKSISGANNLSSLLVSRNNFSGSIPD----EVGLLSNLVEFSGDGNKFAGQIPGSLAKL--- 497 (698)
Q Consensus 429 ~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--- 497 (698)
++|++++|++.+. . +..+..+++|++|++++|+++. ++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555554431 1 1112344555555555555531 111 12233444444444444443333333333
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 34444444444444 3333332 4445555555554422 22 344444455555554443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=203.59 Aligned_cols=225 Identities=18% Similarity=0.185 Sum_probs=175.5
Q ss_pred cccEEEccCccccccCCh---hccCCCCCCEEEccCCcCCcCCCccc--cCCCCCCEEEcccCccceecC----cccCCC
Q 005410 307 QLESLNLYENRLEGTLPE---SIARSKNLSELKLFNNKLRGGLPSEL--GKYSPLTTLDLSYNQFSGEIP----EGLCEK 377 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~~ 377 (698)
.++.+.+.++.+...... .+..+++|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666666655421100 11234668899999998888888777 788889999999998886544 344568
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCc---c-CccccCCCCCCEEEccCCccccccc--h-hhhcCC
Q 005410 378 GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS---V-PEMFWGLPHMYLFELADNSFTGKIS--K-SISGAN 450 (698)
Q Consensus 378 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~~ 450 (698)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|+++.... . .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888899999999999999987652 2 2334688999999999999974322 2 357889
Q ss_pred CCCeeeccCccceeecCcccccc---CCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEE
Q 005410 451 NLSSLLVSRNNFSGSIPDEVGLL---SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINEL 527 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 527 (698)
+|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 99999999999998878777666 69999999999999 5676654 7999999999999965 33 6888999999
Q ss_pred eCCCCcCcc
Q 005410 528 NLANNRLSG 536 (698)
Q Consensus 528 ~L~~N~l~~ 536 (698)
+|++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999974
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.8e-22 Score=199.56 Aligned_cols=193 Identities=23% Similarity=0.319 Sum_probs=103.7
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEE
Q 005410 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 345666666666666532 2 35556666666666665553322 55555555555555555432 234444555555
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcce
Q 005410 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA 487 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 487 (698)
++++|.+++.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQITDVT--------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCCCCG--------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 55555444321 14444445555555554443222 445555555555555555
Q ss_pred ecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcc
Q 005410 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
+..+ +..+++|++|++++|.+++..+ +..+++|++|+|++|++++.. .+..+++|++|++++|++++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3322 5556666666666666654332 566666666666666666433 25666666666666666654
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3e-21 Score=198.43 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=114.3
Q ss_pred ccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecC-cccCCCCCCCE
Q 005410 304 CELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIP-EGLCEKGSLED 382 (698)
Q Consensus 304 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~ 382 (698)
|.+.-++++.++++++ .+|..+ .+++++|++++|+++.+.+..|.++++|++|++++|++.+.+| ..|.+++++.+
T Consensus 7 C~C~~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp SEEETTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred cEeeCCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 3334456677777776 555544 2567778888887776656667777777777777777755444 34566666554
Q ss_pred -EeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccC-CccccccchhhhcCC-CCCeeeccC
Q 005410 383 -LVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELAD-NSFTGKISKSISGAN-NLSSLLVSR 459 (698)
Q Consensus 383 -L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~ 459 (698)
+.+..|++....|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 44455667666666677777777777777777665555555555555666543 334433333444332 345555555
Q ss_pred ccceeecCccccccCCceEEECCC-CcceecccchhccCCCCCeEEcccCccc
Q 005410 460 NNFSGSIPDEVGLLSNLVEFSGDG-NKFAGQIPGSLAKLSQLGNLDLSENELS 511 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 511 (698)
|+++.. |.......+|+++++.+ |.+....+..|..+++|++|||++|+++
T Consensus 164 N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 555422 22222333445555443 2333222233444445555555555444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.5e-21 Score=183.30 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=140.3
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.++.|.. +.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+.+..+
T Consensus 5 C~C~~~~v~c~~------------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCS------------SCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecC------------CCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 457888888853 22222 22222 3578888888888887777778888888888888888887767
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ ...+..+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCC
Confidence 77788888888888888888666666788888888888888888777777788888888888888877 33344477788
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCC
Q 005410 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKS 260 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 260 (698)
+|++|++++|.+.+ .+++|++|+++.|.+++.+|..++.++.
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888888886653 4567888888888888888887776654
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.5e-20 Score=189.15 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=123.2
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005410 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
+++.|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 566777777776643 2 46667777777777777765544 66777777777777776643 246677777777777
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005410 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+++.
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--DLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC--CChh-hcCCCCCCEEECCCCccCcC
Confidence 7777643 2 26677777777777777765443 666677777777777666 3333 66667777777777766654
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcce
Q 005410 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS 272 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (698)
.+ +..+++|++|++++|++++.. .+..+++|+.|++++|.++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 33 566667777777777666433 2566666666666666665
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.7e-20 Score=178.61 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=135.7
Q ss_pred EEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCc
Q 005410 430 LFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENE 509 (698)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 509 (698)
.++++++.++.. |..+. ++++.|++++|++++..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 444555554432 22222 567888888888887777778888888888888888888888889999999999999999
Q ss_pred cccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005410 510 LSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 510 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..+..++ |+.|++++|+|.|.|+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 9977777789999999999999999988899999999999999999999998888888887 999999999999999988
Q ss_pred hhhhcC
Q 005410 589 YAKEMY 594 (698)
Q Consensus 589 ~~~~~~ 594 (698)
|+..|.
T Consensus 172 ~l~~~l 177 (220)
T 2v9t_B 172 WLADYL 177 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=176.95 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=134.3
Q ss_pred EEEccCCccccccchhhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcceecccchhccCCCCCeEEcccC
Q 005410 430 LFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSEN 508 (698)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 508 (698)
.+++++|.++. +|..+ .+.+++|++++|++++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44555555443 23222 2345677788887776644 45778888888888888888888888999999999999999
Q ss_pred ccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh
Q 005410 509 ELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP 587 (698)
Q Consensus 509 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~ 587 (698)
.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..++ |+.|++++|+|.|.|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99988888899999999999999999988899999999999999999999999899999887 99999999999999998
Q ss_pred hhhhhcC
Q 005410 588 LYAKEMY 594 (698)
Q Consensus 588 ~~~~~~~ 594 (698)
.|+..|.
T Consensus 172 ~~l~~~~ 178 (220)
T 2v70_A 172 AWLGEWL 178 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776655
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.1e-19 Score=186.77 Aligned_cols=242 Identities=17% Similarity=0.110 Sum_probs=190.7
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCC-ccccCCCCCcE-EEcc
Q 005410 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRR-VRLR 410 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~ 410 (698)
++++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|+|++|.+.+.++ ..|.+++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888889998 456655 3689999999999997777789999999999999999866554 67889988776 5667
Q ss_pred CccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccC-ccceeecCccccccC-CceEEECCCCccee
Q 005410 411 HNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSR-NNFSGSIPDEVGLLS-NLVEFSGDGNKFAG 488 (698)
Q Consensus 411 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 488 (698)
.|+++...+..|..+++|++|++++|++....+..+....++..+++.+ +++....+..+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7999988899999999999999999999988777777778888999976 567655566666654 69999999999996
Q ss_pred cccchhccCCCCCeEEccc-CccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCccccc
Q 005410 489 QIPGSLAKLSQLGNLDLSE-NELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 489 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
..+..+ ...+|++|++++ |.++...++.|.++++|++|+|++|+++...+..| .+|+.|.+.++.--..+|. +.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-ch
Confidence 555544 457899999985 66775555678999999999999999995444444 4556666555544446663 66
Q ss_pred ccc-cCeEEcccCcCcc
Q 005410 568 NLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 568 ~~~-L~~L~ls~N~l~~ 583 (698)
.+. |+.++++++ ..|
T Consensus 244 ~l~~L~~l~l~~~-~~c 259 (350)
T 4ay9_X 244 KLVALMEASLTYP-SHC 259 (350)
T ss_dssp TCCSCCEEECSCH-HHH
T ss_pred hCcChhhCcCCCC-ccc
Confidence 676 999999754 444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.2e-20 Score=199.26 Aligned_cols=198 Identities=26% Similarity=0.294 Sum_probs=145.5
Q ss_pred ccccc-ccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccc
Q 005410 55 HWRGV-SCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPAT 133 (698)
Q Consensus 55 ~~~g~-~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 133 (698)
.|.++ .|.. .+++.|++++|.+++ +|..+ +++|++|+|++|.++. +| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 6753 478899999999987 45444 3789999999999874 45 457889999999999886 565
Q ss_pred cCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCC
Q 005410 134 LSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL 213 (698)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 213 (698)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++ .+|. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC-CC--TTC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch-hh--CCC
Confidence 554 89999999998886 555 57888888888888886 443 5678888888888887 3666 54 788
Q ss_pred CEEEcccCCCCCcCCccccCCCCC-------CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccc
Q 005410 214 EYLWLSGCNLLGEIPESLTRLTKL-------KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMT 283 (698)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 283 (698)
++|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 88888888887 4444 443 55 77777777777 4566666677777777777777766666555433
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.8e-20 Score=190.93 Aligned_cols=182 Identities=24% Similarity=0.206 Sum_probs=137.6
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhh-cCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005410 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS-GANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 355555555553 23322 13456666666666666666565 677777777777777766667777788888888888
Q ss_pred CcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCccc---CCCCCCcEEeCCCCcCcc
Q 005410 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI---GNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 560 (698)
|++....+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..| ..+++|+.|||++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877777778888899999999999988888889999999999999999985444445 578999999999999998
Q ss_pred cCcccccccc---cCeEEcccCcCcccCChhh
Q 005410 561 KIPLELQNLR---LNVLNLSNNRLSGELPPLY 589 (698)
Q Consensus 561 ~~p~~~~~~~---L~~L~ls~N~l~~~~~~~~ 589 (698)
..+..+..+. ++.|++++|+|.|.|...|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 7777777765 5889999999999998653
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.6e-19 Score=168.37 Aligned_cols=180 Identities=24% Similarity=0.228 Sum_probs=136.7
Q ss_pred CEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005410 93 AQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 93 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
+.++.+++.++.. |..+ .++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4677777777544 3333 458899999999988777777888899999999999888776667788888999999988
Q ss_pred ccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCC
Q 005410 173 LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIP 252 (698)
Q Consensus 173 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 252 (698)
.+++..+..+.++++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 888777777788888888888888887 3334456778888888888888877666667778888888888886553
Q ss_pred ccccCCCCCceeeccCCcceeccCccccccc
Q 005410 253 SSITEMKSIEQIELFKNSLSGELPVKWVNMT 283 (698)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 283 (698)
.++.|+.|+++.|.++|.+|..++.++
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345677777777777777776665444
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.8e-19 Score=194.32 Aligned_cols=187 Identities=28% Similarity=0.373 Sum_probs=108.7
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEcc
Q 005410 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLR 410 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 410 (698)
+++.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777777665 44333 255666666666665 344 234555555555555554 333 332 55555555
Q ss_pred CccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecc
Q 005410 411 HNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQI 490 (698)
Q Consensus 411 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 490 (698)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 129 ~N~l~~-lp~---------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-CCC---------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 555543 222 34455555555555543 333 34556666666666654 4
Q ss_pred cchhccCCCCCeEEcccCccccccchhhhccCCC-------CEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 491 PGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI-------NELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 491 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|. +. ++|++|+|++|.++ .+|. +.. +| ++|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 43 66777777777766 4444 433 55 77888888877 567777777888888888888877777
Q ss_pred cccccc
Q 005410 564 LELQNL 569 (698)
Q Consensus 564 ~~~~~~ 569 (698)
..+..+
T Consensus 248 ~~l~~l 253 (571)
T 3cvr_A 248 ESLSQQ 253 (571)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.4e-19 Score=170.94 Aligned_cols=143 Identities=25% Similarity=0.276 Sum_probs=119.2
Q ss_pred CCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeC
Q 005410 450 NNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529 (698)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 529 (698)
++|++|++++|++++..|..+..+++|++|++++|.+....+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777777766777777788888888888887666667788899999999999999777777889999999999
Q ss_pred CCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh-hhhhhc
Q 005410 530 ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP-LYAKEM 593 (698)
Q Consensus 530 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~-~~~~~~ 593 (698)
++|+++ .+|..+..+++|++|+|++|++++..+..+..++ |+.|++++|++.|.|+. .+...|
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~ 184 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence 999999 7888899999999999999999987777788887 99999999999999973 344443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5.7e-19 Score=169.37 Aligned_cols=158 Identities=24% Similarity=0.279 Sum_probs=130.9
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.++.|.. +.+. .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+....+
T Consensus 17 ~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 17 CSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 689999998863 2233 2333332 789999999999999888889999999999999999987777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++ ...+..+..++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 159 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCC
Confidence 88899999999999999999777777889999999999999998 56778889999999999999988 33345688899
Q ss_pred CCCEEEcccCCCCCc
Q 005410 212 NLEYLWLSGCNLLGE 226 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~ 226 (698)
+|++|++++|.+...
T Consensus 160 ~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECTTSCBCTT
T ss_pred CCCEEEeeCCCccCC
Confidence 999999999988754
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=164.81 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=126.8
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005410 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 33322 2345677777777766643 4467788888888888888877777888888999999999
Q ss_pred CcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99988888889999999999999999998889999999999999999999998889999999999999999999987554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=172.56 Aligned_cols=172 Identities=33% Similarity=0.422 Sum_probs=111.7
Q ss_pred cCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccE
Q 005410 87 CRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLES 166 (698)
Q Consensus 87 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 166 (698)
..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3456666666766666544 2 36666677777777776665433 6667777777777776664 22 3666677777
Q ss_pred EEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCC
Q 005410 167 LSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNG 246 (698)
Q Consensus 167 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 246 (698)
|++++|.+++. ..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCC--cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777776653 34666777777777777766 22 456667777777777777765544 6677777777777777
Q ss_pred CcccCCccccCCCCCceeeccCCccee
Q 005410 247 LTGSIPSSITEMKSIEQIELFKNSLSG 273 (698)
Q Consensus 247 l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (698)
+++ ++ .+..+++|+.|++++|.+..
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 764 33 36667777777777776653
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2e-18 Score=164.28 Aligned_cols=154 Identities=21% Similarity=0.187 Sum_probs=121.3
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCC
Q 005410 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGN 484 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 484 (698)
+.++++++.++.+ |..+. ++++.|++++|.+.+..+..|..+++|+.|++++|++++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555555532 33222 46677777777776666666777777778888888777777777888888888888888
Q ss_pred cceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCccc
Q 005410 485 KFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 485 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
.++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88866666788899999999999999988888999999999999999999987777899999999999999999763
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=172.71 Aligned_cols=149 Identities=22% Similarity=0.313 Sum_probs=70.1
Q ss_pred CCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEE
Q 005410 400 KCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEF 479 (698)
Q Consensus 400 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 479 (698)
.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|+.|
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 33444444444444433222 33444444444444444321 1234444444444444444421 234444455555
Q ss_pred ECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCc
Q 005410 480 SGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 480 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|+|++|++++ ++ .+..+++|+.|++++|+++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 5555544433 234555555555555555554333 5555555555555555553 22 2555555555555555555
Q ss_pred c
Q 005410 560 G 560 (698)
Q Consensus 560 ~ 560 (698)
.
T Consensus 214 ~ 214 (291)
T 1h6t_A 214 N 214 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.3e-18 Score=185.91 Aligned_cols=174 Identities=32% Similarity=0.409 Sum_probs=120.9
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005410 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 44566777777777776543 2 46777777777777777775544 6777777777777777764 23 577777777
Q ss_pred EEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005410 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
+|+|++|.+++. ..+..+++|+.|+|++|.++ .+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC--CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccC--Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 777777777653 34677777777777777776 22 456777777777777777776555 677777777777777
Q ss_pred CCcccCCccccCCCCCceeeccCCcceec
Q 005410 246 GLTGSIPSSITEMKSIEQIELFKNSLSGE 274 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 274 (698)
.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77743 3467777777777777777643
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=3.1e-18 Score=176.57 Aligned_cols=174 Identities=26% Similarity=0.264 Sum_probs=132.5
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCc-CCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005410 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDIS-TCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
.++++++.++.. |..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567777777753 43332 4589999999999988888887 8999999999999999888888999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccc----cCCCCCCEEEcccCCCC
Q 005410 149 NFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQL----SNLTNLEYLWLSGCNLL 224 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l----~~l~~L~~L~l~~n~l~ 224 (698)
+++...+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.++ .+|..+ ..+++|+.|++++|+++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999877778899999999999999998887888888888888888888887 444433 34666666666666666
Q ss_pred CcCCccccCCCC--CCEEEccCCCCc
Q 005410 225 GEIPESLTRLTK--LKNLDLSFNGLT 248 (698)
Q Consensus 225 ~~~~~~l~~l~~--L~~L~l~~n~l~ 248 (698)
...+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 544445555554 255555555543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.6e-18 Score=161.19 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=125.3
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcceecccc-hhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
+.+++++|+++ .+|..+. .+|++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 5565443 3788888888888866664 488999999999999999988899999999999999999
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC-cccCCCCCCCCCC
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR-GSFLGNPGLCGDL 608 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~-~~~~~n~~~c~~~ 608 (698)
|++++..+..|.++++|++|+|++|++++..|..+..++ |++|++++|+|+|.|+..|+..|.. ..+.++...|..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999988888899999999999999999999999998887 9999999999999999877655432 2334455556543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.2e-18 Score=185.24 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=124.3
Q ss_pred CCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccC
Q 005410 332 LSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRH 411 (698)
Q Consensus 332 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 411 (698)
+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445556666654432 45677788888888877643 3 46777788888888887776544 77778888888888
Q ss_pred ccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceeccc
Q 005410 412 NLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 412 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 877643 2566777777777777777653 3466667777777777776643 455666666666666666665544
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005410 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 536 (698)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 56666666666666666643 245666666666666666654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=155.60 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=94.0
Q ss_pred cCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceE
Q 005410 399 GKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVE 478 (698)
Q Consensus 399 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 478 (698)
..+++|+.|++++|.++. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 445566666666666652 23 45566666666666664432 234556666777777777666555666666666666
Q ss_pred EECCCCcceecccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCc
Q 005410 479 FSGDGNKFAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 479 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666666566666666777777777776 44 333 46666677777777776664 33 56666666777666666
Q ss_pred Cc
Q 005410 558 FS 559 (698)
Q Consensus 558 l~ 559 (698)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=154.14 Aligned_cols=140 Identities=24% Similarity=0.317 Sum_probs=122.0
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005410 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 532 (698)
+.+++++|.++ .+|..+ .++|++|++++|.+. .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777776 455543 368889999999887 66788999999999999999999888889999999999999999
Q ss_pred cCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc
Q 005410 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
++++..|..|.++++|++|+|++|.++...+..|..++ |+.|++++|+|.|.|+..|+..|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 99988888999999999999999999988877888887 99999999999999998888777544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=8.6e-18 Score=164.63 Aligned_cols=167 Identities=26% Similarity=0.290 Sum_probs=117.1
Q ss_pred EEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCC
Q 005410 68 VTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQE 147 (698)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (698)
++.++++.+.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445566666666443 467778888888888887654 3 67778888888888888876544 77888888888888
Q ss_pred CcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC
Q 005410 148 NNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI 227 (698)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 227 (698)
|++++. +. +.. ++|++|++++|.+++. ..+..+++|++|++++|.++ .++ .+..+++|++|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--SIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--BCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--CCh-HHccCCCCCEEECCCCcCcch-
Confidence 887753 32 222 7788888888877753 24777777777777777776 333 566777777777777777655
Q ss_pred CccccCCCCCCEEEccCCCCccc
Q 005410 228 PESLTRLTKLKNLDLSFNGLTGS 250 (698)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~ 250 (698)
..+..+++|+.|++++|.+...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4566777777777777776643
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=156.35 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=99.5
Q ss_pred cCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccE
Q 005410 87 CRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLES 166 (698)
Q Consensus 87 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 166 (698)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 455667777777776653 33 46677777777777775542 235667777777777777777666666777777777
Q ss_pred EEccCcccCCcccccccCcCCCcEeeccCCC-CCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005410 167 LSLFNNLLNGTISSSLGNISTLKELRLAYNP-FQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 167 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++.. .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 7777777776666667777777777777776 44 334 4666667777777776666432 4566666666666666
Q ss_pred CCc
Q 005410 246 GLT 248 (698)
Q Consensus 246 ~l~ 248 (698)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=5.2e-19 Score=198.32 Aligned_cols=218 Identities=20% Similarity=0.165 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCC
Q 005410 23 QDGLYLRRVKLGLS-DPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNY 101 (698)
Q Consensus 23 ~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~ 101 (698)
.++.++++....+. ..+..-..|.... ...+.|.+..+. .++++.|+|..+.+... +..+ |+.++|+.+.
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDS-TPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS 202 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCC-CccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence 34456666654432 1112233464433 234678777665 36789999999888764 2222 3334444443
Q ss_pred Ccc---------cCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005410 102 INS---------SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 102 ~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
+.+ ..+..|..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 322 34667778888888888888887 55555667888888888888888 67777888888888888888
Q ss_pred ccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCC-CCEEEccCCCCcccC
Q 005410 173 LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTK-LKNLDLSFNGLTGSI 251 (698)
Q Consensus 173 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~ 251 (698)
.++ .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 887 55777888888888888888776 66777888888888888888887777766544321 223667777777666
Q ss_pred Ccc
Q 005410 252 PSS 254 (698)
Q Consensus 252 ~~~ 254 (698)
|..
T Consensus 358 p~~ 360 (727)
T 4b8c_D 358 PHE 360 (727)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=9.4e-18 Score=170.78 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=127.4
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCc----CcccCCccccCCCCC
Q 005410 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS----FSGKIPQSLGKCRSL 404 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L 404 (698)
+++|++|++.+ .++.+.+.+|..+++|+++++++|.+....+.+|.++.++..+.+..+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 7776777778888888888888887776777777776666666655422 122233445556666
Q ss_pred c-EEEccCccCc-CccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECC
Q 005410 405 R-RVRLRHNLLS-GSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGD 482 (698)
Q Consensus 405 ~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 482 (698)
+ .+.+....-. ...........+++.+.+.++-...........+++|+.+++++|+++...+.+|..|.+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 3444322110 0000000123344444444332111111111235667777777666665555666666666666666
Q ss_pred CCcceecccchhccCCCCC-eEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEe
Q 005410 483 GNKFAGQIPGSLAKLSQLG-NLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLD 552 (698)
Q Consensus 483 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 552 (698)
+| +....+.+|.+|++|+ .+++.+ .++.+.+..|.++++|+++++++|.++...+.+|.++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 65 5555556666666666 666666 55555556666666666666666666655555666666666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=4.2e-18 Score=173.32 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=92.1
Q ss_pred CCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc----eeccCccccccccc
Q 005410 210 LTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL----SGELPVKWVNMTTL 285 (698)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~~~~L 285 (698)
+++|+.|++.+ .++.+...+|..+++|+.++++.|.+....+.+|..+.++..+....+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 55555555566666666666666666555555555555555544433211 11111223333333
Q ss_pred c-ccccCCCccccccCCcc-----ccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEE
Q 005410 286 L-RFDASMNQLTGTIPNEL-----CELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTL 359 (698)
Q Consensus 286 ~-~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 359 (698)
+ .+.+.... .++..+ ....++.+.+.++-...........+++|+.+++++|+++.+.+..|..+.+|+++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3 11111110 000000 00022333333221110000011124455555555555554444445555555555
Q ss_pred EcccCccceecCcccCCCCCCC-EEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005410 360 DLSYNQFSGEIPEGLCEKGSLE-DLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 360 ~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
++.+| ++...+.+|.++.+|+ .+++.+ .+..+.+.+|.+|++|+.++++.|.++.+.+.+|.++++|+.+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 55544 4434444444444454 444444 3433444444444444444444444444444444444444444
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=163.34 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=95.1
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeecc
Q 005410 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVS 458 (698)
Q Consensus 379 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 458 (698)
.++.++++++.+.+.. .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555555554332 355566666666666666532 2 45556666666666666654433 5556666666666
Q ss_pred CccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccC
Q 005410 459 RNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEI 538 (698)
Q Consensus 459 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 538 (698)
+|++++ +|.. .. ++|++|++++|.+.+. ..+..+++|++|++++|++++. + .+..+++|++|+|++|++++.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 666653 2221 11 5666666666666542 2355666666666666666643 2 456666666666666666643
Q ss_pred CcccCCCCCCcEEeCCCCcCccc
Q 005410 539 PSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 539 ~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
..+..+++|+.|++++|.+++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4556666666666666666543
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=1.2e-15 Score=159.28 Aligned_cols=335 Identities=14% Similarity=0.038 Sum_probs=175.7
Q ss_pred CCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcC
Q 005410 78 LSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPAS 157 (698)
Q Consensus 78 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 157 (698)
++.+-..+|.++.+|+++.|..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34444567778888888888644 66667777888888888887654 55556677777777777766543 34344555
Q ss_pred ccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC
Q 005410 158 FGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL 237 (698)
Q Consensus 158 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 237 (698)
|.++..++...... .......+|.++++|+.+.+..+. ..+...+|..+.+|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~--------------------------~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM--------------------------ETLHNGLFSGCGKL 187 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC--------------------------CEECTTTTTTCTTC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc--------------------------ceeccccccCCCCc
Confidence 65554433332222 122333445555555555554332 11223334444445
Q ss_pred CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCcc
Q 005410 238 KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENR 317 (698)
Q Consensus 238 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 317 (698)
+.+++..+ ++......|.++..|+.+.+..+... +.........|+.+.+....
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~----------------------- 241 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF----------------------- 241 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-----------------------
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-----------------------
Confidence 54444433 33233344555555555554443221 11112222333333222110
Q ss_pred ccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCcc
Q 005410 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQS 397 (698)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 397 (698)
...-...+..+..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+.++ +..+...+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 1011223444555555555544322 3444455555565555544322 2234555666666666543 44444556
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005410 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.....+|.+|.+|+.+++..+ +. .+..+|.+|++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666543 55455666777777777776554 55555566777777777777644 22 2334566777776
Q ss_pred EE
Q 005410 478 EF 479 (698)
Q Consensus 478 ~L 479 (698)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.4e-19 Score=192.60 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=55.4
Q ss_pred ceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCC
Q 005410 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..+.++++|++|+|++|++++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555543 333 555555555555555555 445555555555555555555553 34 455555555555555
Q ss_pred CcCcccC-cccccccc-cCeEEcccCcCcccCC
Q 005410 556 NLFSGKI-PLELQNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 556 N~l~~~~-p~~~~~~~-L~~L~ls~N~l~~~~~ 586 (698)
|.+++.. |..+..++ |+.|++++|++++..|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555544 55555554 5555555555555444
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.2e-16 Score=148.55 Aligned_cols=138 Identities=23% Similarity=0.307 Sum_probs=107.1
Q ss_pred CCCeeeccCccceeecCc-cccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeC
Q 005410 451 NLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 529 (698)
++++|++++|++++..+. .+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 667777777777655543 4677888888888888888888888888999999999999999888888899999999999
Q ss_pred CCCcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChh
Q 005410 530 ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 530 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
++|++++..|..|..+++|++|+|++|++++..+-......++...+..+...|.-|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 99999988899999999999999999999986553211101333355666667766644
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=2.5e-15 Score=156.95 Aligned_cols=335 Identities=12% Similarity=0.049 Sum_probs=226.0
Q ss_pred CcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccccc
Q 005410 102 INSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSS 181 (698)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 181 (698)
++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45556667777777777777643 55555667777777777777543 44344455666666655444322 22122222
Q ss_pred ccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 005410 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSI 261 (698)
Q Consensus 182 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 261 (698)
| .++..++..... ........+|..+++|+.+.+..+- .......|..+.+|
T Consensus 136 F-------------------------~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 F-------------------------KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKL 187 (394)
T ss_dssp T-------------------------TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred e-------------------------ecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCc
Confidence 2 222222111111 1222334568888889998887553 33556678888888
Q ss_pred ceeeccCCcceeccCccccccccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCc
Q 005410 262 EQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNK 341 (698)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 341 (698)
+.+.+..+ +.......+.++..|+.+.+..+... +.+.......|+.+.+...
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-------------------------i~~~~~~~~~l~~i~ip~~- 240 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-------------------------LGDFALSKTGVKNIIIPDS- 240 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-------------------------ECTTTTTTCCCCEEEECTT-
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE-------------------------eehhhcccCCCceEEECCC-
Confidence 88888765 44344556677777776655443221 1122234467888888654
Q ss_pred CCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCcc
Q 005410 342 LRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEM 421 (698)
Q Consensus 342 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 421 (698)
++.+....+..+..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+..+ ++.+...+
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 34455667888999999999887443 6667788999999998876543 3457889999999999765 66677889
Q ss_pred ccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCC
Q 005410 422 FWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLG 501 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 501 (698)
|.+|.+|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.....+|.+|.+|+++++..+ +. ....+|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 999999999999754 77677889999999999999876 66677789999999999999765 32 3356788898888
Q ss_pred eE
Q 005410 502 NL 503 (698)
Q Consensus 502 ~L 503 (698)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.8e-15 Score=156.92 Aligned_cols=240 Identities=10% Similarity=0.091 Sum_probs=126.0
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEcc
Q 005410 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLR 410 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 410 (698)
+|+.+.+.++ ++.+...+|.++ +|+.+.+.+ .+....+.+|.++.+|+.+++.+|.+..+....|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444433 333333344432 344444443 33333444444555555555555444444444444 3455555554
Q ss_pred CccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcce---
Q 005410 411 HNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA--- 487 (698)
Q Consensus 411 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 487 (698)
.+ ++.+...+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 32 44444445555555555555442 33333444444 455555552 3344344455555556666555554433
Q ss_pred --ecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcccCccc
Q 005410 488 --GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 488 --~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
...+.+|.+|++|+.++|. +.++......|.++.+|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 3445566667777777776 3355555566666777777777444 554555667776 7777777777766666666
Q ss_pred ccccc--cCeEEcccCcC
Q 005410 566 LQNLR--LNVLNLSNNRL 581 (698)
Q Consensus 566 ~~~~~--L~~L~ls~N~l 581 (698)
|..+. ++.+.+..+.+
T Consensus 365 F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCCSCTTCCEEEECGGGH
T ss_pred ccCCCCCccEEEeCHHHH
Confidence 66553 66666665544
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.6e-15 Score=157.28 Aligned_cols=265 Identities=14% Similarity=0.094 Sum_probs=182.9
Q ss_pred ccccccccCCCccccccCCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 005410 283 TTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLS 362 (698)
Q Consensus 283 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 362 (698)
..++.+.+.. .++......|...+|+.+.+..+ +...-..+|.++ +|+.+.+.+ .++.+.+.+|..+++|+.++++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 3444444433 23333344454557777777765 554555566664 688888875 6666666778888888888888
Q ss_pred cCccceecCcccCCCCCCCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005410 363 YNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 363 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
+|.++......|. +.+|+.+.+.++ +..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++...
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 8877755555555 577888888744 66666777888888888888764 55566667777 67888888 44566666
Q ss_pred chhhhcCCCCCeeeccCccce-----eecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchh
Q 005410 443 SKSISGANNLSSLLVSRNNFS-----GSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEG 517 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 517 (698)
..+|.+|++|+.+++.+|.+. ...+.+|..|++|+.+++. +.+......+|.+|++|+.++|..+ ++...+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 777888888888888777654 3556677788888888887 3466666777888888888888554 55566677
Q ss_pred hhccCCCCEEeCCCCcCcccCCcccCCCC-CCcEEeCCCCcCc
Q 005410 518 IESWKNINELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFS 559 (698)
Q Consensus 518 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 559 (698)
|.++ +|+++++++|.+....+..|.+++ .++.|.+..+.+.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7777 888888888877766667777774 6777777766654
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=8.9e-19 Score=190.20 Aligned_cols=186 Identities=23% Similarity=0.209 Sum_probs=97.3
Q ss_pred CCCCCEEEccCCCCcccCCccccCCCCCceeeccCCc-------------ceeccCccccccccccccc-cCCCcccccc
Q 005410 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS-------------LSGELPVKWVNMTTLLRFD-ASMNQLTGTI 299 (698)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~n~l~~~~ 299 (698)
+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 444444555544444 344444444444444443332 3344555566666666666 4444332
Q ss_pred CCccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCC
Q 005410 300 PNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379 (698)
Q Consensus 300 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 379 (698)
.++.+.+++|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++
T Consensus 424 -------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred -------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 23344444444442111 235666666666664 343 556666666666666665 45555555556
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEccCccCcCcc-CccccCCCCCCEEEccCCccccc
Q 005410 380 LEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-PEMFWGLPHMYLFELADNSFTGK 441 (698)
Q Consensus 380 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 441 (698)
|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 6666666665554 33 4555555555555555555544 55555555555555555555544
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=3.5e-16 Score=143.50 Aligned_cols=139 Identities=21% Similarity=0.253 Sum_probs=114.3
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
.+.+++++++++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356777777776 344332 36888888888888877777788899999999999999977777789999999999999
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
|++++..+..|..+++|++|++++|.+++..+..+..++ |++|++++|++.|.||.. ++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 999977777789999999999999999987777777777 999999999999999843 44433
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=6.6e-17 Score=181.27 Aligned_cols=187 Identities=22% Similarity=0.200 Sum_probs=83.4
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005410 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
+.++.|+|.+|.+... +. ..|+.++|+.|.+.+ ++++.|.+. ..+..|..+++|++|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 5678888888877653 22 234555555554432 233333333 44455555566666666
Q ss_pred cCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc
Q 005410 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|..+++|++|+|++|.++
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 666655 33444445666666666666665 55666666666666666666666 44666666666666666666665
Q ss_pred cCCccccCCCCCceeeccCCcceeccCcccccccc-ccccccCCCccccccCCc
Q 005410 250 SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTT-LLRFDASMNQLTGTIPNE 302 (698)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 302 (698)
.+|..|..+++|+.|+|++|.+++.+|..+..... ...+++++|.+++.+|..
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 45555666666666666666666666655544321 223566667766666653
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.2e-16 Score=140.53 Aligned_cols=131 Identities=23% Similarity=0.199 Sum_probs=57.3
Q ss_pred CCCEEEccCCccc-cccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEc
Q 005410 427 HMYLFELADNSFT-GKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL 505 (698)
Q Consensus 427 ~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 505 (698)
+|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3344444444433 23333334444444444444444322 33344444444444444444334444444445555555
Q ss_pred ccCcccccc-chhhhccCCCCEEeCCCCcCcccCC---cccCCCCCCcEEeCCCCcCc
Q 005410 506 SENELSGGI-PEGIESWKNINELNLANNRLSGEIP---SEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 506 s~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555544321 1344445555555555555543222 24445555555555555444
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.6e-16 Score=139.95 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=48.5
Q ss_pred cCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCCCCCCcccccCCCCC
Q 005410 134 LSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL 213 (698)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 213 (698)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|++++|.++....+..+..+++|
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence 33344444444444443322 3344444444444444444433333333444444444444444411111334444445
Q ss_pred CEEEcccCCCCCcCC---ccccCCCCCCEEEccCCCCc
Q 005410 214 EYLWLSGCNLLGEIP---ESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 214 ~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 248 (698)
++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555444443333 24445555555555555443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.5e-16 Score=137.27 Aligned_cols=127 Identities=21% Similarity=0.223 Sum_probs=73.5
Q ss_pred CcEEEEECCCCCCC-cCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEE
Q 005410 66 QRVTSVNLSQSQLS-GPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLE 144 (698)
Q Consensus 66 ~~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 144 (698)
.+++.|++++|.++ +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34556666666665 45555566666666666666666554 4556666666666666666655555555566666666
Q ss_pred CCCCcCccc-CCcCccCCCCccEEEccCcccCCccc---ccccCcCCCcEeecc
Q 005410 145 LQENNFTGD-IPASFGEFTQLESLSLFNNLLNGTIS---SSLGNISTLKELRLA 194 (698)
Q Consensus 145 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 194 (698)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 22445556666666666665554433 345555555555543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=7.8e-16 Score=136.76 Aligned_cols=84 Identities=26% Similarity=0.258 Sum_probs=40.5
Q ss_pred CCCCEEECCCCCCc-ccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005410 90 PYLAQLSLYNNYIN-SSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 90 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444455555555555555555433 3444444444444444444433343333344444444
Q ss_pred ccCcccC
Q 005410 169 LFNNLLN 175 (698)
Q Consensus 169 L~~n~l~ 175 (698)
+++|.++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 4444443
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=134.98 Aligned_cols=126 Identities=24% Similarity=0.293 Sum_probs=100.1
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005410 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.++++++.++.. |..+ .++|++|+|++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|.
T Consensus 14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 466677777743 3333 257889999999886 455788888889999998888888888888888888888888888
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCC
Q 005410 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 199 (698)
+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88877778888888888888888888776667777888888888888765
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.3e-14 Score=131.37 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=101.3
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005410 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~~~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.++.|. +++++.. |..+ .++|++|++++|++.+..+..|..+++|++|++++|.+.+..+
T Consensus 5 C~C~~~~l~~~------------~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCN------------SKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECC------------SSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEec------------CCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 34677766664 3444433 2222 3688899999998888777778888889999998888887777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCCCCC
Q 005410 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 199 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77888888888888888888776677788888888888888888666666677778888888877766
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=9.9e-15 Score=132.38 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=95.2
Q ss_pred ceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCC
Q 005410 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
.+.+++++|.+.. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777763 45444 37889999999999988888899999999999999999977777789999999999999
Q ss_pred CcCcccCcccccccc-cCeEEcccCcCcccCCh-hhhhhc
Q 005410 556 NLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP-LYAKEM 593 (698)
Q Consensus 556 N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~-~~~~~~ 593 (698)
|++++..+..|..++ |++|++++|+|+|.|+. .|+..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~ 127 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW 127 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence 999988887888887 99999999999999983 355444
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=5.3e-13 Score=139.18 Aligned_cols=112 Identities=11% Similarity=0.183 Sum_probs=64.3
Q ss_pred CCccccCCC-CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCC---CcccCccccCCCCCCCEEECCCCcCcccCCcC
Q 005410 82 FPIFFCRLP-YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNL---LVGAIPATLSQLKNLKSLELQENNFTGDIPAS 157 (698)
Q Consensus 82 ~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 157 (698)
...+|.+++ .|+.+.+..+ ++.+...+|.+|.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.....+
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345666664 4777777654 666666677777777777766543 44445566666666666665543 33344455
Q ss_pred ccCCCCccEEEccCcccCCcccccccCcCCCcEeeccCC
Q 005410 158 FGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYN 196 (698)
Q Consensus 158 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 196 (698)
|..+.+|+.+.+..+ +..+....|.++.+|+.+.+..+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce
Confidence 666666666666532 23344444555555555555433
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=132.42 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=38.4
Q ss_pred hccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc--ccCCCCCCcEEeCCCCcCcccCccc----cc
Q 005410 494 LAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS--EIGNLPVLNYLDLSGNLFSGKIPLE----LQ 567 (698)
Q Consensus 494 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~ 567 (698)
+..+++|++|++++|.+++..+..+..+++|++|+|++|+++ .+|. .+..+++|++|++++|+++. .|.. +.
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~ 137 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIY 137 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHH
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHH
Confidence 344444444444444444333333344444444444444443 2332 44444455555555555442 2221 33
Q ss_pred ccc-cCeEEcccCcCc
Q 005410 568 NLR-LNVLNLSNNRLS 582 (698)
Q Consensus 568 ~~~-L~~L~ls~N~l~ 582 (698)
.++ |+.||+++|...
T Consensus 138 ~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCSEETTEECCHH
T ss_pred HCCccceeCCCcCCHH
Confidence 333 555555555443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.5e-14 Score=132.39 Aligned_cols=135 Identities=17% Similarity=0.159 Sum_probs=116.2
Q ss_pred cccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCC
Q 005410 421 MFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQL 500 (698)
Q Consensus 421 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 500 (698)
.+..+++|+.|++++|.+... +......++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 467889999999999999854 44333344999999999999865 678899999999999999997766777999999
Q ss_pred CeEEcccCccccccch--hhhccCCCCEEeCCCCcCcccCCcc----cCCCCCCcEEeCCCCcCcc
Q 005410 501 GNLDLSENELSGGIPE--GIESWKNINELNLANNRLSGEIPSE----IGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 501 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~ 560 (698)
++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++||+++|.+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999997 4555 7899999999999999998 56664 8899999999999998864
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.7e-14 Score=128.97 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=91.2
Q ss_pred eEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCC
Q 005410 477 VEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 477 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 556 (698)
+.+++++|.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777765 4554443 68888999999998888888889999999999999998766666788999999999999
Q ss_pred cCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005410 557 LFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 557 ~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
+|++..+..+..++ |++|++++|+|.|.|+.. ++..|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 99977777788887 999999999999998733 44444
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=1.4e-12 Score=136.12 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred CcccCCcCCcCCC-CCCEEECCCCCCcccCccccCCCCCCCEEECCCCc---CcccCCcCccCCCCccEEEccCcccCCc
Q 005410 102 INSSLPLDISTCR-NLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN---FTGDIPASFGEFTQLESLSLFNNLLNGT 177 (698)
Q Consensus 102 ~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 177 (698)
++.+...+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4556667888874 5888888754 666777888888888888887653 55455566777777777766543 4445
Q ss_pred ccccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccC
Q 005410 178 ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITE 257 (698)
Q Consensus 178 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 257 (698)
....|..+.+|+.+.+..+... --...+..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+- ......++..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~--I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTS--VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSE 203 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTT
T ss_pred hhhhhhhhcccccccccceeee--ecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhh
Confidence 5556667777777776544221 11234555666666666443 33233333432 445555554332 2133334444
Q ss_pred CCCCceeec
Q 005410 258 MKSIEQIEL 266 (698)
Q Consensus 258 l~~L~~L~l 266 (698)
+..+.....
T Consensus 204 c~~l~~~~~ 212 (394)
T 4gt6_A 204 CFALSTITS 212 (394)
T ss_dssp CTTCCEEEE
T ss_pred ccccceecc
Confidence 444444433
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=3.4e-16 Score=146.40 Aligned_cols=115 Identities=25% Similarity=0.269 Sum_probs=63.2
Q ss_pred hhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCC
Q 005410 445 SISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44445555555555555543 33 4445555555555555554 344445555666666666666654 23 45566666
Q ss_pred CEEeCCCCcCcccCC-cccCCCCCCcEEeCCCCcCcccCcc
Q 005410 525 NELNLANNRLSGEIP-SEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 525 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
++|+|++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 666666666653221 3456666666666666666655443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.5e-16 Score=145.56 Aligned_cols=155 Identities=25% Similarity=0.304 Sum_probs=99.7
Q ss_pred ccCCCCCcEEEccCccCcCccCc------cccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc
Q 005410 398 LGKCRSLRRVRLRHNLLSGSVPE------MFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG 471 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 471 (698)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666666666666665554 66677777777777777765 34 6666777777777777776 4565566
Q ss_pred ccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccc-hhhhccCCCCEEeCCCCcCcccCCcc---------
Q 005410 472 LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIP-EGIESWKNINELNLANNRLSGEIPSE--------- 541 (698)
Q Consensus 472 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~--------- 541 (698)
.+++|++|++++|.+.+. | .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 667777777777777652 3 46666777777777777764322 35666777777777777776554432
Q ss_pred -cCCCCCCcEEeCCCCcCc
Q 005410 542 -IGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 542 -~~~l~~L~~L~Ls~N~l~ 559 (698)
+..+++|+.|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 55666666665 55554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.5e-13 Score=123.14 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=94.9
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
.+.+++++|.++ .+|..+ .++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 456544 37889999999999988888999999999999999999988888889999999999999
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCcccCc
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|++++..+..|..+++|++|+|++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99997777789999999999999999987654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=2.4e-13 Score=139.46 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=101.5
Q ss_pred EEECCCC-cceecccchhccCCCCCeEEccc-CccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCC
Q 005410 478 EFSGDGN-KFAGQIPGSLAKLSQLGNLDLSE-NELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 478 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|++|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4666 88888899999986 888888778888999999999999999988888889999999999999
Q ss_pred CcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCCc---ccCCCCCCCCC
Q 005410 556 NLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYRG---SFLGNPGLCGD 607 (698)
Q Consensus 556 N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~---~~~~n~~~c~~ 607 (698)
|+|++..+..+..+.|+.|++++|+|.|.|+..|+..|... .+..+...|..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 99998777777777799999999999999988777665432 22334455543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.6e-13 Score=121.17 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=92.6
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005410 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 532 (698)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888876 5665443 78999999999999888889999999999999999999877777899999999999999
Q ss_pred cCcccCCcccCCCCCCcEEeCCCCcCcccC
Q 005410 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
++++..+..|..+++|++|+|++|++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999766667999999999999999998644
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=8.8e-14 Score=142.81 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCCcEEEccCccCcCccCcccc-----CCCCCCEEEccCCccccccchhh-hcCCCCCeeeccCccceeecCccc-----
Q 005410 402 RSLRRVRLRHNLLSGSVPEMFW-----GLPHMYLFELADNSFTGKISKSI-SGANNLSSLLVSRNNFSGSIPDEV----- 470 (698)
Q Consensus 402 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~----- 470 (698)
+.|+.|++++|.++......+. ..++|+.|++++|.+.......+ ..+.+|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555432222211 12455555555555543222221 223455666666665543322222
Q ss_pred cccCCceEEECCCCcceec----ccchhccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCccc----C
Q 005410 471 GLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGE----I 538 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~ 538 (698)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. +++.+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666665432 233345566666677766666542 234445556667777777666542 2
Q ss_pred CcccCCCCCCcEEeCCCCcCcccCcccc
Q 005410 539 PSEIGNLPVLNYLDLSGNLFSGKIPLEL 566 (698)
Q Consensus 539 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 566 (698)
+..+...++|++|||++|.|+......+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 2334445666777777776665433333
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=6.7e-13 Score=136.24 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=122.9
Q ss_pred CCCCCEEEccCCccccccchhhhcC-----CCCCeeeccCccceeecCccc-cccCCceEEECCCCcceecccchh----
Q 005410 425 LPHMYLFELADNSFTGKISKSISGA-----NNLSSLLVSRNNFSGSIPDEV-GLLSNLVEFSGDGNKFAGQIPGSL---- 494 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~---- 494 (698)
.+.|+.|++++|.++......+... ++|++|+|++|.++......+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999986544444433 799999999999875433333 346789999999999976544443
Q ss_pred -ccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCccc----CCcccCCCCCCcEEeCCCCcCcccCccc
Q 005410 495 -AKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGE----IPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 495 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.++......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999999753 445557789999999999999853 3566778889999999999998643333
Q ss_pred ----ccccc-cCeEEcccCcCccc
Q 005410 566 ----LQNLR-LNVLNLSNNRLSGE 584 (698)
Q Consensus 566 ----~~~~~-L~~L~ls~N~l~~~ 584 (698)
+...+ |++|++++|+++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 33334 99999999998754
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=9.2e-10 Score=114.09 Aligned_cols=83 Identities=10% Similarity=0.123 Sum_probs=51.9
Q ss_pred CCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcccccccCcCCC
Q 005410 109 DISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTL 188 (698)
Q Consensus 109 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 188 (698)
.+....+|+.+.+... ++.+...+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 4556677888887643 55566777888888888888653 555556667776 5666666543 443444445443 56
Q ss_pred cEeeccCC
Q 005410 189 KELRLAYN 196 (698)
Q Consensus 189 ~~L~l~~n 196 (698)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 66666543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=9.3e-10 Score=114.07 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=82.7
Q ss_pred ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCC
Q 005410 396 QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSN 475 (698)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 475 (698)
..+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++......|.++..|+.+.+..+ +.......|..|.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 44445555555555433 33344455556666666666543 44444455666666666666533 33344455666666
Q ss_pred ceEEECCCCcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005410 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 546 (698)
|+.+.+.++.++.....+|.+|.+|+.++|..+ ++.+-...|.++.+|+++.+..+ ++..-..+|.++.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 666666666666555666667777777777543 44444556677777777766544 4434445565543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.1e-11 Score=126.90 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=73.6
Q ss_pred eeeccCc-cceeecCccccccCCceEEECCC-CcceecccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005410 454 SLLVSRN-NFSGSIPDEVGLLSNLVEFSGDG-NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 454 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 531 (698)
.++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4556665 555 3555 66677777777775 777766667777777777777777777777777777777777777777
Q ss_pred CcCcccCCcccCCCCCCcEEeCCCCcCccc
Q 005410 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
|+|++..+..|..++ |+.|+|++|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 777755555555555 77777777777653
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=7.3e-10 Score=112.53 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=54.5
Q ss_pred cCCCCCeEEcccCccccccchhhh---ccCCCCEEeCCCCcCccc----CCcccCCCCCCcEEeCCCCcCcccCcccccc
Q 005410 496 KLSQLGNLDLSENELSGGIPEGIE---SWKNINELNLANNRLSGE----IPSEIGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 496 ~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
.+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888877654433332 467888888888888753 3333455678888888888877543333332
Q ss_pred cccCeEEcccCc
Q 005410 569 LRLNVLNLSNNR 580 (698)
Q Consensus 569 ~~L~~L~ls~N~ 580 (698)
.-...+++++|+
T Consensus 330 alg~~~~~~~~~ 341 (362)
T 2ra8_A 330 SLPMKIDVSDSQ 341 (362)
T ss_dssp HCCSEEECCSBC
T ss_pred HcCCEEEecCCc
Confidence 113457777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=2e-09 Score=109.28 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=90.1
Q ss_pred cccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhh--cCCCCCeeeccC--ccceee-----cC
Q 005410 397 SLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS--GANNLSSLLVSR--NNFSGS-----IP 467 (698)
Q Consensus 397 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~ 467 (698)
.+..+++|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666655211 1121 2 256677777766666543333333 567777777642 111111 00
Q ss_pred ccc--cccCCceEEECCCCcceecccchhc---cCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCcccC
Q 005410 468 DEV--GLLSNLVEFSGDGNKFAGQIPGSLA---KLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGEI 538 (698)
Q Consensus 468 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~ 538 (698)
..+ ..+++|+.|++.+|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 2467888888888877643333332 467888888888888764 3444466788899999888887543
Q ss_pred CcccCC-CCCCcEEeCCCCc
Q 005410 539 PSEIGN-LPVLNYLDLSGNL 557 (698)
Q Consensus 539 ~~~~~~-l~~L~~L~Ls~N~ 557 (698)
-..+.. + ...++++.++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 3568888877
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=2.3e-08 Score=91.42 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=28.9
Q ss_pred hccCCCCCeEEcccCccccc----cchhhhccCCCCEEeC--CCCcCccc----CCcccCCCCCCcEEeCCCCcC
Q 005410 494 LAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNL--ANNRLSGE----IPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 494 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l 558 (698)
+...++|++|+|++|.+... +.+.+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33344555555555555432 2233344444555555 44554431 122233334455555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=7.4e-09 Score=94.76 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred CccccCCCCCCEEECCCC-CCccc----CCcCCcCCCCCCEEECCCCCCccc----CccccCCCCCCCEEECCCCcCccc
Q 005410 83 PIFFCRLPYLAQLSLYNN-YINSS----LPLDISTCRNLTDLNLGSNLLVGA----IPATLSQLKNLKSLELQENNFTGD 153 (698)
Q Consensus 83 ~~~~~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 153 (698)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345566677777777777 66542 233445556677777777666532 233344455666666666666532
Q ss_pred ----CCcCccCCCCccEEEc--cCcccCCcc----cccccCcCCCcEeeccCCCC
Q 005410 154 ----IPASFGEFTQLESLSL--FNNLLNGTI----SSSLGNISTLKELRLAYNPF 198 (698)
Q Consensus 154 ----~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~ 198 (698)
+..++...++|++|++ ++|.++... ...+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444555566665 555554321 12223334455555554443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=9.3e-08 Score=91.71 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=19.7
Q ss_pred cCCCCCeEEcccCcccc--ccchhhhccCCCCEEeCCCCcCc
Q 005410 496 KLSQLGNLDLSENELSG--GIPEGIESWKNINELNLANNRLS 535 (698)
Q Consensus 496 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~ 535 (698)
++++|++|+|++|++++ .+|..+..+++|+.|+|++|+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34455555555555554 22334444555555555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=8.6e-08 Score=91.95 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=52.4
Q ss_pred cccCCceEEECCCCccee--cccchhccCCCCCeEEcccCccccccchhhhccC--CCCEEeCCCCcCcccCCc------
Q 005410 471 GLLSNLVEFSGDGNKFAG--QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK--NINELNLANNRLSGEIPS------ 540 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~------ 540 (698)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|++++. +.+..+. +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345666666666666665 3345566777888888888887754 2344444 778888888887765552
Q ss_pred -ccCCCCCCcEEe
Q 005410 541 -EIGNLPVLNYLD 552 (698)
Q Consensus 541 -~~~~l~~L~~L~ 552 (698)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 355677777775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.5e-06 Score=76.97 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCceEEECCCCcceecccchhccCCCCCeEEcccCc-cccccchhhhcc----CCCCEEeCCCCc-CcccCCcccCCCCC
Q 005410 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESW----KNINELNLANNR-LSGEIPSEIGNLPV 547 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~ 547 (698)
..|++||+++|.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666665554444445666677777777764 554333334432 357777777763 55433344556677
Q ss_pred CcEEeCCCCc
Q 005410 548 LNYLDLSGNL 557 (698)
Q Consensus 548 L~~L~Ls~N~ 557 (698)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.99 E-value=1.1e-05 Score=68.39 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=54.8
Q ss_pred CEEeCCCCcCc-ccCCcccCCCCCCcEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC
Q 005410 525 NELNLANNRLS-GEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 525 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+. |+.|+|++|+|.|.|...|+..|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 36777888776 34554432 3689999999999988888888887 9999999999999999887776654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=1.6e-06 Score=76.78 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=13.9
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCC
Q 005410 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSN 124 (698)
Q Consensus 91 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n 124 (698)
.|++||++++.++..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444443333333334444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00017 Score=65.12 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=34.2
Q ss_pred hhccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCcc----cCCcccCCCCCCcEEeCCCC
Q 005410 493 SLAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSG----EIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 493 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N 556 (698)
.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+ .+-+.+..-+.|++|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344455566666666665532 22333444566666666666653 22234445556666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00011 Score=66.23 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=66.9
Q ss_pred cCCCCCeeeccCc-ccee----ecCccccccCCceEEECCCCcceec----ccchhccCCCCCeEEcccCccccc----c
Q 005410 448 GANNLSSLLVSRN-NFSG----SIPDEVGLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGG----I 514 (698)
Q Consensus 448 ~~~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~ 514 (698)
.-+.|++|+|++| ++.. .+.+.+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 4432 1223344456677777777766532 234455667888888888888754 3
Q ss_pred chhhhccCCCCEEeCCCCcC---cc----cCCcccCCCCCCcEEeCCCCcCc
Q 005410 515 PEGIESWKNINELNLANNRL---SG----EIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 515 ~~~~~~l~~L~~L~L~~N~l---~~----~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
.+.+..-+.|++|+|++|.. .. .+...+..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34445556788888886533 32 23344556677888888777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0015 Score=54.99 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=38.8
Q ss_pred eEEcccCccc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCcEEeCCCCcCcc
Q 005410 502 NLDLSENELS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 502 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 23444332 457788888888876666667778888888888887764
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.02 E-value=0.098 Score=33.44 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeee
Q 005410 625 WIFGLIFLLAGVVFVVGVIWFYVKY 649 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (698)
+..+++++++++++++..++++.++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhh
Confidence 4444444444444443333333333
No 166
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=87.05 E-value=0.053 Score=56.37 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=24.9
Q ss_pred ccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 670 IGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 670 ~~~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.++++ .++++|....+||+|+||+||+|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~ 93 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVV 93 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEE
Confidence 456666 77899999999999999999985
No 167
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=85.98 E-value=0.15 Score=50.56 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=13.1
Q ss_pred CCeEecCCCceEEeC
Q 005410 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
...||+|+||+||||
T Consensus 46 ~~~LG~G~fG~Vy~a 60 (329)
T 4aoj_A 46 KWELGEGAFGKVFLA 60 (329)
T ss_dssp EEEEEECSSEEEEEE
T ss_pred EEEEccCCCcEEEEE
Confidence 456999999999986
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.98 E-value=0.44 Score=30.35 Aligned_cols=22 Identities=27% Similarity=0.037 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhe
Q 005410 625 WIFGLIFLLAGVVFVVGVIWFY 646 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~ 646 (698)
+..+++++++++++++...+++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHHH
Confidence 3333444344333333333333
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.88 E-value=2.9 Score=32.66 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCC
Q 005410 78 LSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGS 123 (698)
Q Consensus 78 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~ 123 (698)
++.+-..+|.++..|+.+.|..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444556666666666666554 4455555666666666666554
No 170
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=81.95 E-value=0.28 Score=49.08 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=15.9
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||+||||
T Consensus 64 ~~~~l~~~LG~G~fG~Vy~a 83 (353)
T 4ase_A 64 DRLKLGKPLGRGAFGQVIEA 83 (353)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred HHeEEeeEEecCCCeEEEEE
Confidence 34555667999999999986
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.73 E-value=5.5 Score=31.04 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=32.9
Q ss_pred CCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005410 101 YINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 101 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
.++.+...+|.+|.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455666677888888888887765 44456677777777777777653
No 172
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=77.24 E-value=0.39 Score=47.50 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.0
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a 77 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRM 77 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEE
T ss_pred hheEeCcEeccCCCeEEEEE
Confidence 44555667999999999985
No 173
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=76.11 E-value=1 Score=45.50 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=17.4
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~ 64 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSG 64 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC
T ss_pred hhceeeeEEeeCCCeEEEEE
Confidence 45777889999999999986
No 174
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=76.06 E-value=0.39 Score=49.40 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=19.8
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|...++||+||||+||+|
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a 97 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEA 97 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEE
T ss_pred CCceeEEEecccccCCCEEEEEE
Confidence 56667888889999999999986
No 175
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=75.50 E-value=0.65 Score=46.10 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.3
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|..-..||+|+||+||+|
T Consensus 76 y~~~~~iG~G~fG~V~~a 93 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIA 93 (346)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred cEEeEEeecCcCeEEEEE
Confidence 444456999999999985
No 176
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=72.77 E-value=0.79 Score=46.67 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||+||+|
T Consensus 56 Y~~~~~lG~G~fG~V~~a 73 (398)
T 4b99_A 56 YEIIETIGNGAYGVVSSA 73 (398)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred eEEEEEEecccCeEEEEE
Confidence 444567999999999985
No 177
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=72.44 E-value=0.85 Score=46.61 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|..-..||+|+||+||+|
T Consensus 152 ~y~~~~~iG~G~fG~V~~a 170 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIA 170 (423)
T ss_dssp TEEEEEEEEECSSCEEEEE
T ss_pred hcEeeeEeccCcCcEEEEE
Confidence 3555667999999999985
No 178
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=72.23 E-value=0.59 Score=45.83 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.1
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.++|.....||+|+||+||+|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~ 76 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKV 76 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEE
T ss_pred hhheeeeheeccCCCeEEEEE
Confidence 356888889999999999985
No 179
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=71.90 E-value=0.68 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|.....||+|+||+||+|
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~ 84 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEA 84 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEE
T ss_pred ECCEEEEEEEEeeccCCEEEEEE
Confidence 34566777788999999999986
No 180
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=71.90 E-value=0.57 Score=48.06 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.3
Q ss_pred ccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 670 IGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 670 ~~~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.+++. ..+++|.....||+|+||.||+|
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~ 80 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVV 80 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEE
Confidence 455666 67888999999999999999974
No 181
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=69.57 E-value=0.74 Score=47.18 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.1
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005410 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~l-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.++ .+++.|.....||+|+||+||+|
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~ 88 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLV 88 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEE
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEE
Confidence 3445 56788888899999999999975
No 182
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=66.56 E-value=1.2 Score=48.31 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.-..+||+|+||.||+|
T Consensus 189 ddf~i~k~LG~G~fG~V~la 208 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGC 208 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEE
Confidence 34676788999999999974
No 183
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=65.38 E-value=1.3 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.|.....||+|+||.||+|
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~ 72 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRC 72 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEE
Confidence 3455666778999999999985
No 184
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=65.08 E-value=1.4 Score=43.50 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=14.8
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 51 y~i~~~lG~G~~g~V~~~ 68 (325)
T 3kul_A 51 IHIEKIIGSGDSGEVCYG 68 (325)
T ss_dssp EEEEEEEEETTTEEEEEE
T ss_pred eEEeeEEEeCCCcEEEEE
Confidence 444577999999999985
No 185
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=64.34 E-value=1.5 Score=44.20 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 82 ~~~~~~~LG~G~fg~Vy~a 100 (370)
T 2psq_A 82 KLTLGKPLGEGCFGQVVMA 100 (370)
T ss_dssp GEEEEEEESCCSSSEEEEE
T ss_pred HCEeeeEEeeCCCeeEEEE
Confidence 3455667999999999975
No 186
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=63.45 E-value=1.4 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.9
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
++.|.....||+|+||+||+|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a 73 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFA 73 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEE
Confidence 344666778999999999985
No 187
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=63.14 E-value=1.7 Score=43.03 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.1
Q ss_pred CcCCeEecCCCceEEeC
Q 005410 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||+|
T Consensus 47 ~~~~~lG~G~~g~Vy~~ 63 (333)
T 1mqb_A 47 TRQKVIGAGEFGEVYKG 63 (333)
T ss_dssp EEEEEEEECSSSEEEEE
T ss_pred hcccEEecCCCeEEEEE
Confidence 34567999999999985
No 188
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=63.04 E-value=1.4 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.0
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~ 90 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEG 90 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEE
T ss_pred hHeEEeeEeeeCCCEEEEEE
Confidence 34555677999999999985
No 189
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=62.34 E-value=1.7 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.2
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++|.....||+|+||.||+|
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~ 65 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEA 65 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEE
T ss_pred CHHHceeeeEeccCCCcceEEE
Confidence 4466777788999999999985
No 190
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=62.26 E-value=1.7 Score=43.73 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.0
Q ss_pred CcCCeEecCCCceEEeC
Q 005410 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||+|
T Consensus 92 ~~~~~LG~G~fg~Vy~~ 108 (373)
T 3c1x_A 92 HFNEVIGRGHFGCVYHG 108 (373)
T ss_dssp EEEEEEECCSSSEEEEE
T ss_pred ecCcEeeeCCCeEEEEE
Confidence 33467999999999985
No 191
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=62.22 E-value=1.9 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++|.....||+|+||.||+|
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~ 66 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQA 66 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEE
T ss_pred cHHHCeeeeeeeecCCeeEEEE
Confidence 3456666778999999999985
No 192
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=62.07 E-value=2.1 Score=44.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
...+.|.-...||+|+||+||+|
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a 154 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLA 154 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEE
T ss_pred hhhccEEEEeEEeeCCCeEEEEE
Confidence 44567777788999999999985
No 193
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=61.97 E-value=1.4 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|.....||+|+||+||+|
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~ 73 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKA 73 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEE
T ss_pred EeeeeEEEEEEEeecCCEEEEEE
Confidence 45677887889999999999985
No 194
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=61.67 E-value=1.7 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~ 73 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLV 73 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEE
Confidence 34666778999999999974
No 195
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=59.02 E-value=2.1 Score=43.33 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 70 ~y~i~~~LG~G~~g~Vy~a 88 (382)
T 3tt0_A 70 RLVLGKPLGEGAFGQVVLA 88 (382)
T ss_dssp GEEEEEEEEECSSEEEEEE
T ss_pred heEeeeEEecCCCeEEEEE
Confidence 3445567999999999975
No 196
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=59.00 E-value=2 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=15.9
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~ 70 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKM 70 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEE
T ss_pred hheeEeeEecccCCEEEEEE
Confidence 34555667999999999985
No 197
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=57.84 E-value=2 Score=43.59 Aligned_cols=19 Identities=32% Similarity=0.234 Sum_probs=16.0
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||+|
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~ 75 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQV 75 (390)
T ss_dssp EEEEEEEEECCSSEEEEEE
T ss_pred ceEEEEEEccCCCeEEEEE
Confidence 3666778999999999985
No 198
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=57.84 E-value=2.2 Score=42.23 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=16.9
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.++|.-...||+|+||.||+|
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~ 64 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNA 64 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEE
T ss_pred HHHceeeeeecCCCCceeEEe
Confidence 345666778999999999985
No 199
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=57.83 E-value=2.2 Score=43.40 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~ 71 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLV 71 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEE
Confidence 34666678999999999974
No 200
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=57.50 E-value=2.1 Score=42.01 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 45 y~~~~~lg~G~~g~Vy~~ 62 (320)
T 3a99_A 45 YQVGPLLGSGGFGSVYSG 62 (320)
T ss_dssp EEEEEECSSSSSCEEEEE
T ss_pred eEEEEEEeeCCCeEEEEE
Confidence 444567999999999985
No 201
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=57.37 E-value=2.2 Score=43.98 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||+||+|
T Consensus 98 ry~~~~~LG~G~fg~V~~a 116 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKA 116 (429)
T ss_dssp TEEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcccCccEEEEEE
Confidence 4556678999999999985
No 202
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=57.27 E-value=2.4 Score=44.06 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=15.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 189 ~~~~~~~lG~G~fg~V~~~ 207 (454)
T 1qcf_A 189 SLKLEKKLGAGQFGEVWMA 207 (454)
T ss_dssp GEEEEEEEECCSSEEEEEE
T ss_pred HeEEEEEcccCCceEEEEE
Confidence 3444567999999999986
No 203
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=57.19 E-value=2.2 Score=43.83 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 56 y~~~~~lG~G~fg~Vy~~ 73 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQA 73 (420)
T ss_dssp EEEEEEEEECSSEEEEEE
T ss_pred EEeeeEEeeCCCEEEEEE
Confidence 344577999999999985
No 204
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=55.53 E-value=2.5 Score=42.44 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 44 y~~~~~lG~G~~g~Vy~~ 61 (371)
T 4exu_A 44 YVSPTHVGSGAYGSVCSA 61 (371)
T ss_dssp EEEEEEEEECSSEEEEEE
T ss_pred EEEEeEEecCCCeEEEEE
Confidence 444567999999999985
No 205
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=55.13 E-value=1.8 Score=43.62 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.2
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
++.|.....||+|+||.||+|
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a 92 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEA 92 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEcceeecCCCEEEEEE
Confidence 455666788999999999985
No 206
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=54.83 E-value=2.2 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 47 ~~~~~~lg~G~~g~V~~a 64 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLA 64 (321)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred hhccEEeccCCCeEEEEE
Confidence 333457999999999985
No 207
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=54.45 E-value=2.1 Score=42.97 Aligned_cols=21 Identities=14% Similarity=-0.094 Sum_probs=16.9
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005410 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
...|.....||+|+||.||+|
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~ 81 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLV 81 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEE
T ss_pred ceeeeeeeeccCCCCEEEEEE
Confidence 344666788999999999985
No 208
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=53.64 E-value=2.4 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 115 ~~~~~~~lG~G~~g~V~~~ 133 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSG 133 (377)
T ss_dssp GEEEEEEEEEETTEEEEEE
T ss_pred HeEEeeEeccCCCCeEEEE
Confidence 3445567999999999986
No 209
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=53.10 E-value=3 Score=41.46 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 43 y~~~~~lG~G~~g~V~~~ 60 (350)
T 1rdq_E 43 FDRIKTLGTGSFGRVMLV 60 (350)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred CEEEEEeecCcCcEEEEE
Confidence 444567999999999974
No 210
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=52.25 E-value=3 Score=43.32 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=9.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||+||+|
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~ 72 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEA 72 (458)
T ss_dssp TTEEECCC-------CEEEE
T ss_pred CCeEEeeEeeecCCeEEEEE
Confidence 45666778999999999985
No 211
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=52.13 E-value=2.7 Score=43.56 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.5
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~ 167 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILV 167 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEE
Confidence 45666788999999999974
No 212
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=51.91 E-value=2.3 Score=42.75 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=9.1
Q ss_pred CcCCeEecCCCceEEeC
Q 005410 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||+|
T Consensus 92 ~~~~~lG~G~~g~Vy~a 108 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKC 108 (373)
T ss_dssp EEEEECC-----CEEEE
T ss_pred ecceEEecCcCEEEEEE
Confidence 34567999999999985
No 213
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=51.84 E-value=2.9 Score=42.37 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.0
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~ 70 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRC 70 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEE
Confidence 34555677999999999985
No 214
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=51.78 E-value=3.3 Score=42.96 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 186 ~~~~~~lG~G~fg~Vy~~ 203 (452)
T 1fmk_A 186 LRLEVKLGQGCFGEVWMG 203 (452)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred ceeeeeecCCCCeEEEEE
Confidence 344567999999999986
No 215
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=51.50 E-value=4.5 Score=38.10 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.7
Q ss_pred cCCeEecCCCceEEeC
Q 005410 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
-...||+|+||.||+|
T Consensus 51 i~~~ig~G~~g~Vy~a 66 (258)
T 1zth_A 51 MGGVISTGKEANVFYA 66 (258)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred hCCEEeecceEEEEEE
Confidence 4567999999999985
No 216
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=51.32 E-value=3.4 Score=43.93 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a 204 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFAC 204 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEE
Confidence 45666778999999999974
No 217
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=51.15 E-value=2.5 Score=42.01 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=14.4
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 44 y~~~~~lg~G~~g~Vy~~ 61 (352)
T 2jii_A 44 WKLKSFQTRDNQGILYEA 61 (352)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCCeEEEEE
Confidence 344567999999999985
No 218
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=51.06 E-value=2.5 Score=41.73 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.9
Q ss_pred CcCCeEecCCCceEEeC
Q 005410 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||++
T Consensus 44 ~~~~~lg~G~~g~Vy~~ 60 (335)
T 2owb_A 44 VRGRFLGKGGFAKCFEI 60 (335)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeeCCCeEEEEE
Confidence 34567999999999984
No 219
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=51.01 E-value=2.9 Score=44.82 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 158 ~Y~i~~~lG~G~fg~V~~~ 176 (573)
T 3uto_A 158 HYDIHEELGTGAFGVVHRV 176 (573)
T ss_dssp TEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEEEeeccCeEEEEE
Confidence 4555567999999999985
No 220
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=50.58 E-value=6.5 Score=41.77 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=7.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
...-..+.||+|+||.||||
T Consensus 336 ~~~~~~~~LG~G~fg~Vy~~ 355 (540)
T 3en9_A 336 KRKIPEHLIGKGAEADIKRD 355 (540)
T ss_dssp ------------CCEEEEEE
T ss_pred ccCCCCCEEeeCCCEEEEEE
Confidence 33345678999999999975
No 221
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=50.51 E-value=3 Score=44.62 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=16.8
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a 203 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCAC 203 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEE
Confidence 45677788999999999975
No 222
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=50.39 E-value=3.8 Score=44.61 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=12.9
Q ss_pred CCeEecCCCceEEeC
Q 005410 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
++.||+|+||.||+|
T Consensus 374 ~~~LG~G~fG~Vy~~ 388 (635)
T 4fl3_A 374 DKELGSGNFGTVKKG 388 (635)
T ss_dssp EEEEEECSSEEEEEE
T ss_pred CCEeccCCCEEEEEE
Confidence 347999999999985
No 223
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=50.30 E-value=3.6 Score=42.79 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.3
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||+||+|
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a 81 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAA 81 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEE
T ss_pred CCeEEEEEeecCCCeEEEEE
Confidence 45566678999999999975
No 224
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=50.12 E-value=3.5 Score=39.50 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
....+.-...||+|+||.||+|
T Consensus 88 ~~~~~~~~~~iG~G~~g~Vy~~ 109 (282)
T 1zar_A 88 SGKVDAIGKLMGEGKESAVFNC 109 (282)
T ss_dssp TTSCSEEEEEEEECSSEEEEEE
T ss_pred CCeEEEecCEeccCCCceEEEE
Confidence 3344555688999999999985
No 225
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=49.95 E-value=3.8 Score=41.03 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005410 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
...+.|.....||+|+||.||+|
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a 113 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRC 113 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEE
Confidence 45667888889999999999985
No 226
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=49.55 E-value=3.5 Score=42.67 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||+|
T Consensus 194 ~~~~~~~lG~G~fg~V~~~ 212 (450)
T 1k9a_A 194 ELKLLQTIGKGEFGDVMLG 212 (450)
T ss_dssp GEEEEEEEEECSSEEEEEE
T ss_pred HeEEEeeecCcCCeeEEEE
Confidence 3444567999999999986
No 227
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=48.32 E-value=3.7 Score=40.51 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=17.5
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005410 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..+.|.....||+|+||.||+|
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~ 61 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRG 61 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEE
T ss_pred ccccEEEEeeecCCCCcEEEEE
Confidence 3445666778999999999985
No 228
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=46.85 E-value=3.3 Score=43.58 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 222 ~~~~~~lG~G~fg~Vy~~ 239 (495)
T 1opk_A 222 ITMKHKLGGGQYGEVYEG 239 (495)
T ss_dssp EEEEEESGGGTTSSEEEE
T ss_pred ceeeeEecCCCCeEEEEE
Confidence 444567999999999986
No 229
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=45.69 E-value=4.7 Score=44.09 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.1
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a 409 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQG 409 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEE
T ss_pred ccEEEeeEEeeCCCEEEEEE
Confidence 34555678999999999985
No 230
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=45.59 E-value=4.4 Score=43.04 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.4
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 269 ~~~~~~lG~G~fg~Vy~~ 286 (535)
T 2h8h_A 269 LRLEVKLGQGCFGEVWMG 286 (535)
T ss_dssp EEEEEEEEECSSEEEEEE
T ss_pred hhhheecccCCCeEEEEE
Confidence 334567999999999986
No 231
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=45.16 E-value=4.1 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005410 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~ 360 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLS 360 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEE
T ss_pred cceEEEEEEccCCCEEEEEE
Confidence 45666778999999999975
No 232
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=44.28 E-value=5 Score=39.27 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.2
Q ss_pred cCCeEecCCCceEEeC
Q 005410 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
-...||+|+||.||+|
T Consensus 45 ~~~~lg~G~~g~V~~~ 60 (326)
T 2w1i_A 45 FLQQLGKGNFGSVEMC 60 (326)
T ss_dssp EEEEEECCSSEEEEEE
T ss_pred eeeeeccCCCeEEEEE
Confidence 3456999999999975
No 233
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=44.23 E-value=7 Score=42.34 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=11.9
Q ss_pred eEecCCCceEEeC
Q 005410 686 LIGSGASGKSQEG 698 (698)
Q Consensus 686 ~iG~gg~g~VYkg 698 (698)
.||+|+||.||+|
T Consensus 343 ~LG~G~fG~Vy~~ 355 (613)
T 2ozo_A 343 ELGCGNFGSVRQG 355 (613)
T ss_dssp EEEECSSSEEEEE
T ss_pred EEecCCCcEEEEE
Confidence 6999999999985
No 234
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=43.74 E-value=6 Score=40.15 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=12.5
Q ss_pred CeEecCCCceEEeC
Q 005410 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|+||+||+|
T Consensus 68 ~~LG~G~~g~V~~~ 81 (400)
T 1nxk_A 68 QVLGLGINGKVLQI 81 (400)
T ss_dssp EEEEEETTEEEEEE
T ss_pred ceeeeccCeEEEEE
Confidence 57999999999975
No 235
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=36.67 E-value=11 Score=37.99 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=15.1
Q ss_pred CCcCCeEecCCCceEEeC
Q 005410 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
+.-...||+|+||.||+|
T Consensus 97 Y~I~~~IG~Gk~a~VY~a 114 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIV 114 (397)
T ss_dssp SEEEEEEEECSSEEEEEE
T ss_pred EEecCEeeeCCceEEEEE
Confidence 445678999999999985
No 236
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=35.64 E-value=7 Score=42.97 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.5
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005410 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+||||.||+|
T Consensus 81 ~y~i~~~lg~G~~g~Vy~a 99 (681)
T 2pzi_A 81 QYEVKGCIAHGGLGWIYLA 99 (681)
T ss_dssp TEEEEEEEEEETTEEEEEE
T ss_pred ceEEEEEEeeCCCeEEEEE
Confidence 4555667999999999985
No 237
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=33.24 E-value=29 Score=24.27 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=3.1
Q ss_pred HHHhhhee
Q 005410 640 VGVIWFYV 647 (698)
Q Consensus 640 ~~~~~~~~ 647 (698)
++..|+|.
T Consensus 31 i~gcwcyl 38 (90)
T 1zza_A 31 ILGCWCYL 38 (90)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 33344443
Done!