Query 005411
Match_columns 698
No_of_seqs 423 out of 2685
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00653 GlnA glutamine synth 100.0 4.5E-68 9.8E-73 588.8 30.7 285 402-698 6-313 (460)
2 COG0174 GlnA Glutamine synthet 100.0 2.4E-67 5.2E-72 572.5 29.6 285 399-698 6-297 (443)
3 PRK09469 glnA glutamine synthe 100.0 4.5E-66 9.8E-71 573.4 31.1 284 401-698 8-321 (469)
4 TIGR03105 gln_synth_III glutam 100.0 5.5E-66 1.2E-70 569.1 31.1 281 403-698 5-291 (435)
5 PRK02925 glucuronate isomerase 100.0 6.9E-55 1.5E-59 469.1 27.5 361 5-381 18-466 (466)
6 PLN02284 glutamine synthetase 100.0 1.3E-54 2.8E-59 466.8 24.6 260 408-698 21-290 (354)
7 COG1904 UxaC Glucuronate isome 100.0 2.2E-51 4.8E-56 428.7 22.7 359 5-379 17-462 (463)
8 PF00120 Gln-synt_C: Glutamine 100.0 2.9E-51 6.4E-56 426.0 15.4 193 503-698 1-201 (259)
9 PLN03036 glutamine synthetase; 100.0 4.9E-50 1.1E-54 436.3 24.9 258 410-698 80-350 (432)
10 PF02614 UxaC: Glucuronate iso 100.0 7.8E-49 1.7E-53 430.2 18.0 359 4-378 16-462 (462)
11 KOG0683 Glutamine synthetase [ 99.9 9.7E-25 2.1E-29 224.8 12.8 232 403-650 24-266 (380)
12 COG2159 Predicted metal-depend 99.9 3.6E-22 7.8E-27 210.6 19.2 154 205-382 135-292 (293)
13 PF04909 Amidohydro_2: Amidohy 99.7 1.1E-18 2.5E-23 181.7 5.8 178 186-380 82-273 (273)
14 COG3968 Uncharacterized protei 99.6 1.4E-14 3E-19 152.2 14.6 137 524-661 215-366 (724)
15 PF03951 Gln-synt_N: Glutamine 99.4 2.4E-13 5.2E-18 116.5 7.6 80 407-497 1-84 (84)
16 cd01311 PDC_hydrolase 2-pyrone 99.4 2.4E-12 5.3E-17 134.5 12.5 139 213-377 109-263 (263)
17 COG3618 Predicted metal-depend 99.2 2.2E-10 4.8E-15 117.4 13.9 140 216-380 126-278 (279)
18 cd01310 TatD_DNAse TatD like p 99.0 1.5E-09 3.2E-14 112.1 11.6 147 210-379 104-251 (251)
19 TIGR00010 hydrolase, TatD fami 98.6 2.5E-07 5.5E-12 95.5 11.2 142 213-380 107-252 (252)
20 COG0418 PyrC Dihydroorotase [N 97.9 0.00056 1.2E-08 70.7 16.8 215 145-383 47-306 (344)
21 KOG4245 Predicted metal-depend 97.9 1.8E-05 3.8E-10 76.5 5.6 186 177-383 68-290 (297)
22 cd00530 PTE Phosphotriesterase 97.9 0.0002 4.4E-09 75.9 14.3 146 218-378 140-293 (293)
23 PRK10812 putative DNAse; Provi 97.8 0.00017 3.7E-09 75.5 12.1 141 216-381 113-257 (265)
24 PRK11449 putative deoxyribonuc 97.7 0.0003 6.6E-09 73.4 12.1 138 216-380 116-258 (258)
25 TIGR02050 gshA_cyan_rel unchar 97.7 0.00023 5.1E-09 75.4 11.1 129 526-694 1-157 (287)
26 PRK13517 carboxylate-amine lig 97.7 0.00025 5.5E-09 78.0 11.6 132 524-694 10-168 (373)
27 PF01026 TatD_DNase: TatD rela 97.5 0.00032 6.9E-09 73.1 9.0 138 214-379 111-255 (255)
28 PRK13516 gamma-glutamyl:cystei 97.4 0.00082 1.8E-08 73.7 11.2 132 524-694 11-169 (373)
29 PRK09875 putative hydrolase; P 97.4 0.0039 8.4E-08 66.1 15.9 146 220-379 145-292 (292)
30 COG0084 TatD Mg-dependent DNas 97.4 0.0017 3.8E-08 67.3 11.8 138 216-380 114-256 (256)
31 cd01294 DHOase Dihydroorotase 97.3 0.0056 1.2E-07 66.4 15.0 156 214-381 113-298 (335)
32 PLN02611 glutamate--cysteine l 97.2 0.0014 3E-08 73.6 9.6 93 584-694 123-247 (482)
33 PRK13515 carboxylate-amine lig 97.2 0.0022 4.8E-08 70.6 10.9 131 524-694 5-162 (371)
34 PRK13518 carboxylate-amine lig 97.0 0.0034 7.3E-08 68.2 10.3 130 526-694 14-170 (357)
35 PRK10425 DNase TatD; Provision 97.0 0.0063 1.4E-07 63.5 11.4 140 216-380 110-258 (258)
36 COG1099 Predicted metal-depend 96.8 0.015 3.2E-07 58.0 11.4 135 220-381 120-254 (254)
37 TIGR02048 gshA_cyano glutamate 96.5 0.011 2.5E-07 64.8 9.7 123 526-694 2-151 (376)
38 PF02126 PTE: Phosphotriestera 96.5 0.016 3.4E-07 62.0 10.3 147 220-378 148-307 (308)
39 cd01292 metallo-dependent_hydr 96.3 0.022 4.7E-07 58.4 10.1 104 213-328 132-237 (275)
40 PRK05451 dihydroorotase; Provi 96.3 0.065 1.4E-06 58.5 14.0 80 212-296 116-200 (345)
41 PLN02599 dihydroorotase 96.1 0.08 1.7E-06 58.1 13.4 158 213-381 135-323 (364)
42 PF04107 GCS2: Glutamate-cyste 95.8 0.0081 1.7E-07 63.8 4.1 97 582-694 34-160 (288)
43 TIGR01436 glu_cys_lig_pln glut 95.7 0.097 2.1E-06 58.8 12.0 44 584-628 80-124 (446)
44 TIGR00856 pyrC_dimer dihydroor 95.5 0.2 4.2E-06 54.6 13.4 80 212-295 113-196 (341)
45 COG1831 Predicted metal-depend 95.4 0.09 1.9E-06 54.0 9.4 133 218-382 149-284 (285)
46 COG2355 Zn-dependent dipeptida 94.3 0.84 1.8E-05 48.7 13.6 139 218-379 153-308 (313)
47 cd01302 Cyclic_amidohydrolases 93.7 1.2 2.7E-05 48.3 14.2 143 215-381 116-287 (337)
48 COG2170 Uncharacterized conser 93.6 0.094 2E-06 55.8 4.9 91 587-694 43-160 (369)
49 cd01297 D-aminoacylase D-amino 93.3 1.3 2.8E-05 49.5 14.0 150 210-381 195-355 (415)
50 KOG3020 TatD-related DNase [Re 93.3 0.52 1.1E-05 49.7 9.8 90 220-328 141-231 (296)
51 KOG2902 Dihydroorotase [Nucleo 93.1 0.3 6.6E-06 49.3 7.4 112 216-331 119-251 (344)
52 cd01314 D-HYD D-hydantoinases 92.9 1.8 3.9E-05 48.7 14.4 115 259-383 227-378 (447)
53 TIGR01975 isoAsp_dipep isoaspa 92.0 1.3 2.8E-05 49.2 11.4 141 227-381 188-344 (389)
54 PF01244 Peptidase_M19: Membra 91.6 0.9 2E-05 49.0 9.5 70 300-379 247-319 (320)
55 cd01301 rDP_like renal dipepti 90.1 4.1 8.9E-05 43.7 12.7 69 300-377 239-309 (309)
56 PRK09357 pyrC dihydroorotase; 89.5 3.6 7.9E-05 46.0 12.4 161 215-382 160-365 (423)
57 COG1735 Php Predicted metal-de 87.7 4.1 8.9E-05 43.0 10.2 148 220-381 158-315 (316)
58 cd01307 Met_dep_hydrolase_B Me 87.5 7.6 0.00016 42.0 12.9 134 218-381 153-297 (338)
59 cd01309 Met_dep_hydrolase_C Me 87.3 6 0.00013 43.3 12.0 141 212-383 178-322 (359)
60 PLN02795 allantoinase 87.2 13 0.00027 42.9 15.0 157 214-381 212-428 (505)
61 PLN02942 dihydropyrimidinase 86.9 13 0.00029 42.4 15.0 162 215-382 168-383 (486)
62 TIGR03444 gshA_related glutama 85.1 4.4 9.6E-05 44.6 9.3 41 587-628 66-107 (390)
63 PTZ00124 adenosine deaminase; 83.8 4.8 0.0001 44.2 9.0 84 147-236 139-228 (362)
64 TIGR00857 pyrC_multi dihydroor 83.8 17 0.00038 40.5 13.7 162 213-381 146-351 (411)
65 cd01315 L-HYD_ALN L-Hydantoina 82.8 14 0.0003 41.6 12.6 163 213-381 161-373 (447)
66 PRK07369 dihydroorotase; Provi 82.4 14 0.00031 41.3 12.3 161 215-381 163-367 (418)
67 cd01317 DHOase_IIa Dihydroorot 78.7 27 0.00058 38.4 12.8 34 344-381 292-325 (374)
68 cd01299 Met_dep_hydrolase_A Me 77.2 98 0.0021 33.2 16.5 25 212-236 158-182 (342)
69 TIGR02967 guan_deamin guanine 77.1 29 0.00062 38.4 12.5 153 215-382 187-344 (401)
70 PRK08323 phenylhydantoinase; V 75.1 30 0.00065 39.0 12.2 34 344-381 343-376 (459)
71 PRK09059 dihydroorotase; Valid 74.5 32 0.00069 38.7 12.1 162 213-381 165-370 (429)
72 PRK08044 allantoinase; Provisi 73.7 43 0.00093 37.9 12.9 119 259-381 232-375 (449)
73 PF04273 DUF442: Putative phos 73.0 4.9 0.00011 36.3 4.1 70 167-237 26-96 (110)
74 PRK09228 guanine deaminase; Pr 72.8 51 0.0011 37.1 13.2 108 214-327 211-323 (433)
75 PRK10657 isoaspartyl dipeptida 72.2 42 0.0009 36.9 12.2 140 229-382 192-344 (388)
76 PRK07213 chlorohydrolase; Prov 71.4 1.1E+02 0.0024 33.6 15.2 146 212-381 177-326 (375)
77 cd01303 GDEase Guanine deamina 69.6 73 0.0016 35.7 13.6 105 215-327 209-320 (429)
78 TIGR02033 D-hydantoinase D-hyd 69.3 84 0.0018 35.3 14.1 35 344-382 345-379 (454)
79 TIGR03121 one_C_dehyd_A formyl 68.3 41 0.00089 39.0 11.1 62 316-381 374-450 (556)
80 cd04869 ACT_GcvR_2 ACT domains 68.3 11 0.00023 31.3 5.0 66 565-632 10-81 (81)
81 PRK06189 allantoinase; Provisi 67.9 46 0.001 37.6 11.6 117 259-381 229-373 (451)
82 PRK07583 cytosine deaminase-li 67.9 61 0.0013 36.5 12.5 56 213-272 211-266 (438)
83 TIGR03178 allantoinase allanto 67.3 52 0.0011 37.1 11.8 33 344-380 337-369 (443)
84 PRK08417 dihydroorotase; Provi 66.6 98 0.0021 34.2 13.6 163 215-381 131-335 (386)
85 PRK09061 D-glutamate deacylase 66.4 1.2E+02 0.0026 34.9 14.7 33 343-379 401-434 (509)
86 cd01295 AdeC Adenine deaminase 66.0 90 0.002 34.9 13.3 127 218-380 125-254 (422)
87 cd01300 YtcJ_like YtcJ_like me 65.6 26 0.00057 39.8 9.1 113 210-330 291-415 (479)
88 cd01308 Isoaspartyl-dipeptidas 63.9 99 0.0021 33.9 13.0 72 305-381 263-342 (387)
89 PRK02382 dihydroorotase; Provi 63.8 68 0.0015 36.1 11.9 155 216-381 163-361 (443)
90 PRK08204 hypothetical protein; 62.6 1.2E+02 0.0026 34.0 13.7 101 216-327 203-303 (449)
91 COG3453 Uncharacterized protei 61.7 18 0.00038 33.1 5.2 71 167-237 27-97 (130)
92 PF06877 RraB: Regulator of ri 61.3 65 0.0014 28.3 9.0 95 506-627 2-98 (104)
93 PRK09045 N-ethylammeline chlor 60.9 63 0.0014 36.4 10.9 107 215-327 203-311 (443)
94 PRK12394 putative metallo-depe 60.6 2.3E+02 0.005 31.1 15.1 138 215-381 174-321 (379)
95 PF13740 ACT_6: ACT domain; PD 60.3 26 0.00056 29.0 5.8 62 566-630 14-75 (76)
96 KOG0558 Dihydrolipoamide trans 59.8 7.9 0.00017 41.3 3.1 54 564-633 248-302 (474)
97 cd01316 CAD_DHOase The eukaryo 59.3 78 0.0017 34.5 10.9 113 260-381 146-281 (344)
98 cd01318 DHOase_IIb Dihydroorot 57.8 1.3E+02 0.0029 32.9 12.5 115 259-382 168-308 (361)
99 PRK15493 5-methylthioadenosine 57.6 50 0.0011 37.2 9.3 105 215-327 198-306 (435)
100 PRK09237 dihydroorotase; Provi 57.1 1.9E+02 0.0041 31.7 13.7 18 364-381 299-316 (380)
101 PRK13404 dihydropyrimidinase; 56.5 1.3E+02 0.0029 34.3 12.6 34 344-381 352-385 (477)
102 cd01298 ATZ_TRZ_like TRZ/ATZ f 54.9 62 0.0013 35.5 9.5 107 214-328 194-304 (411)
103 PRK08203 hydroxydechloroatrazi 51.4 75 0.0016 35.8 9.6 105 215-327 215-323 (451)
104 PRK06151 N-ethylammeline chlor 50.8 94 0.002 35.5 10.3 110 211-326 218-338 (488)
105 smart00874 B5 tRNA synthetase 50.8 28 0.0006 28.3 4.4 50 569-626 22-71 (71)
106 PRK06361 hypothetical protein; 50.6 1.1E+02 0.0025 30.4 9.8 96 265-380 115-210 (212)
107 PRK08418 chlorohydrolase; Prov 50.5 1.6E+02 0.0036 32.7 11.9 102 216-327 192-313 (408)
108 cd04872 ACT_1ZPV ACT domain pr 50.4 24 0.00052 30.0 4.1 68 565-633 12-79 (88)
109 PRK00194 hypothetical protein; 50.2 22 0.00048 30.3 3.9 67 565-632 14-80 (90)
110 cd01306 PhnM PhnM is believed 49.6 3.7E+02 0.008 29.1 15.6 151 185-381 141-293 (325)
111 PF03102 NeuB: NeuB family; I 49.4 23 0.00049 36.6 4.5 76 205-295 94-180 (241)
112 cd01304 FMDH_A Formylmethanofu 47.8 3.3E+02 0.0072 31.7 13.8 18 364-381 430-447 (541)
113 cd01305 archeal_chlorohydrolas 46.9 1.3E+02 0.0028 31.0 9.9 98 216-328 127-224 (263)
114 cd04870 ACT_PSP_1 CT domains f 46.1 41 0.00089 27.6 4.8 65 566-632 11-75 (75)
115 COG3964 Predicted amidohydrola 44.0 4.3E+02 0.0094 28.4 12.6 134 220-382 178-321 (386)
116 PRK08393 N-ethylammeline chlor 42.7 2E+02 0.0044 32.1 11.2 106 214-327 189-298 (424)
117 TIGR01244 conserved hypothetic 42.6 51 0.0011 30.6 5.4 19 168-186 27-45 (135)
118 cd01312 Met_dep_hydrolase_D Me 41.5 1.8E+02 0.0039 32.1 10.4 105 216-328 165-291 (381)
119 PRK07627 dihydroorotase; Provi 41.3 2.4E+02 0.0052 31.7 11.4 81 215-295 162-260 (425)
120 PRK06038 N-ethylammeline chlor 40.8 1.7E+02 0.0036 32.9 10.1 107 213-327 189-299 (430)
121 PRK06687 chlorohydrolase; Vali 38.9 1.9E+02 0.0041 32.2 10.2 105 215-327 197-305 (419)
122 cd01313 Met_dep_hydrolase_E Me 38.1 2.7E+02 0.0058 31.0 11.3 105 214-327 207-315 (418)
123 cd00443 ADA_AMPD Adenosine/AMP 37.8 5.2E+02 0.011 27.4 14.1 100 214-330 153-258 (305)
124 PRK07228 N-ethylammeline chlor 36.9 2.5E+02 0.0054 31.4 10.9 105 215-327 200-308 (445)
125 TIGR03583 EF_0837 probable ami 36.5 4.2E+02 0.009 28.8 12.2 22 356-381 292-313 (365)
126 cd01296 Imidazolone-5PH Imidaz 36.3 4.1E+02 0.0089 28.7 12.2 24 213-236 192-215 (371)
127 PRK06886 hypothetical protein; 36.3 3.3E+02 0.0072 29.5 11.1 50 214-271 162-215 (329)
128 PRK12393 amidohydrolase; Provi 34.8 4E+02 0.0087 30.1 12.1 107 213-327 217-327 (457)
129 PF03484 B5: tRNA synthetase B 34.6 66 0.0014 26.2 4.2 48 568-626 21-70 (70)
130 PRK09236 dihydroorotase; Revie 34.3 6.1E+02 0.013 28.5 13.4 28 350-381 341-368 (444)
131 cd04893 ACT_GcvR_1 ACT domains 33.5 1.2E+02 0.0025 25.2 5.6 64 565-631 12-75 (77)
132 TIGR01224 hutI imidazoloneprop 33.4 4.6E+02 0.01 28.4 12.0 22 215-236 198-219 (377)
133 PRK14085 imidazolonepropionase 33.3 5E+02 0.011 28.4 12.3 140 211-381 204-344 (382)
134 COG0402 SsnA Cytosine deaminas 33.2 4E+02 0.0087 29.7 11.7 99 216-330 200-310 (421)
135 PTZ00372 endonuclease 4-like p 33.2 6.3E+02 0.014 28.4 12.8 109 217-327 221-350 (413)
136 cd01320 ADA Adenosine deaminas 33.1 6.2E+02 0.013 26.9 17.0 24 213-236 172-195 (325)
137 COG3572 GshA Gamma-glutamylcys 32.2 72 0.0016 35.1 5.0 44 586-630 92-136 (456)
138 COG3364 Zn-ribbon containing p 31.5 32 0.0007 30.3 1.9 27 573-600 52-78 (112)
139 PRK07203 putative chlorohydrol 30.7 79 0.0017 35.5 5.5 106 214-327 205-314 (442)
140 PF06972 DUF1296: Protein of u 30.7 1.5E+02 0.0032 23.7 5.2 38 53-91 5-44 (60)
141 PRK06380 metal-dependent hydro 29.7 5.8E+02 0.013 28.2 12.2 106 215-327 187-296 (418)
142 cd01321 ADGF Adenosine deamina 28.9 1.5E+02 0.0033 32.2 7.1 85 147-237 105-204 (345)
143 PRK09356 imidazolonepropionase 28.4 6.1E+02 0.013 27.8 12.0 24 213-236 221-244 (406)
144 cd02646 R3H_G-patch R3H domain 27.4 55 0.0012 25.7 2.5 41 594-650 17-57 (58)
145 COG3937 Uncharacterized conser 27.3 1.1E+02 0.0023 27.4 4.4 33 340-372 22-54 (108)
146 cd04875 ACT_F4HF-DF N-terminal 26.6 1.4E+02 0.003 24.2 4.9 61 565-627 10-73 (74)
147 cd04882 ACT_Bt0572_2 C-termina 26.6 1.6E+02 0.0036 22.6 5.2 51 566-627 11-63 (65)
148 PRK09060 dihydroorotase; Valid 25.8 7.4E+02 0.016 27.8 12.2 30 348-381 335-364 (444)
149 PF04468 PSP1: PSP1 C-terminal 25.4 82 0.0018 27.1 3.4 60 565-629 25-84 (88)
150 PRK11589 gcvR glycine cleavage 24.7 1.9E+02 0.004 28.8 6.2 64 565-634 106-179 (190)
151 KOG4127 Renal dipeptidase [Pos 24.2 4.6E+02 0.01 28.8 9.2 123 248-380 255-390 (419)
152 COG0044 PyrC Dihydroorotase an 24.1 9E+02 0.02 27.3 12.3 162 211-382 155-363 (430)
153 PF14395 COOH-NH2_lig: Phage p 23.4 1.1E+02 0.0024 31.7 4.3 100 524-650 2-107 (261)
154 COG2089 SpsE Sialic acid synth 21.8 1.5E+02 0.0033 31.9 5.1 78 206-295 129-214 (347)
155 PRK09230 cytosine deaminase; P 21.7 7.4E+02 0.016 27.7 11.1 106 213-327 194-315 (426)
156 TIGR01178 ade adenine deaminas 21.6 6.2E+02 0.013 29.6 10.7 129 220-381 168-296 (552)
157 PRK05985 cytosine deaminase; P 21.0 9.9E+02 0.021 26.1 11.9 24 214-237 191-214 (391)
158 PRK09229 N-formimino-L-glutama 20.6 9.4E+02 0.02 27.0 11.8 105 214-327 216-324 (456)
No 1
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=4.5e-68 Score=588.80 Aligned_cols=285 Identities=30% Similarity=0.451 Sum_probs=253.2
Q ss_pred hhccCCeeEEEEEEecCCCCceeEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEeecCCceec
Q 005411 402 DAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRI 481 (698)
Q Consensus 402 ~~~~~~i~~v~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~~ 481 (698)
.+++++|+||+++|+|++|++|+|.||+++|.+.+.++|++++.+++. + ....+.+|++|+||++|++++
T Consensus 6 ~l~~~~i~~v~~~~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~------~----~~~~~~~D~~l~PD~~Tl~~~ 75 (460)
T TIGR00653 6 LIKEENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIR------G----FQGIEESDMLLKPDPSTAVID 75 (460)
T ss_pred HHHhCCCcEEEEEEECCCCCEeeEEEeHHHhhHHHhcCCeeccccccc------c----cccCCCCcEEEeccCCcceec
Confidence 345688999999999999999999999999975345789988766541 1 111346799999999999999
Q ss_pred cCCC-CccEEEEEeecC-CCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccC-----------------
Q 005411 482 PWQK-QEEMIMADMHLK-PGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLRE----------------- 542 (698)
Q Consensus 482 Pw~~-~~a~V~~d~~~~-dg~p~~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~----------------- 542 (698)
||.+ ++++|+||+++. ||+|++.|||++|||++++++++.|+++++|+|+|||||+.....
T Consensus 76 pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (460)
T TIGR00653 76 PWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRW 155 (460)
T ss_pred cCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccccc
Confidence 9964 589999999998 999999999999999999998678999999999999999853211
Q ss_pred ----CCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHH
Q 005411 543 ----GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLR 618 (698)
Q Consensus 543 ----g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik 618 (698)
+...+.|.+.++||+..+++...+++++|++.|+++||+|+++|+|+|||||||++.|.++|+|||+++++|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik 235 (460)
T TIGR00653 156 NEESGNRGYKPRDKGGYFPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVK 235 (460)
T ss_pred cccCCcCCCcccCCccccCCCCcccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHH
Confidence 1123456666668888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeeeccccCCCCCCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 005411 619 AVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 619 ~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~ 698 (698)
+||++||++|||||||+.+.+|||+|+|+|||++|+|+|. |++++.+||+++++||||||+|+++++||++||+|||+
T Consensus 236 ~vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~--d~~~~~~lS~~~~~fiaGiL~h~~~l~a~~~PtvNSYk 313 (460)
T TIGR00653 236 NVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFA--GEEGYAGLSETALYYIGGILKHAKALAAFTNPTVNSYK 313 (460)
T ss_pred HHHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccC--CCCCCcccCHHHHHHHHHHHHHHHHhhhHhcCCCcchh
Confidence 9999999999999999999999999999999999999998 45566789999999999999999999999999999995
No 2
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-67 Score=572.50 Aligned_cols=285 Identities=32% Similarity=0.491 Sum_probs=253.9
Q ss_pred hhhhhccCCeeEEEEEEecCCCCceeEEEechh----hhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEee
Q 005411 399 KKSDAFESDVSLIRVIWVDASGQHRCRVVPVKR----FNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPD 474 (698)
Q Consensus 399 ~~~~~~~~~i~~v~~~~~D~~G~~R~k~vp~~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD 474 (698)
+..++++++|++|+++|+|+.|++|+|++|+++ +... .+.|+.|++++..-.. ..+.+|++|+||
T Consensus 6 ~~~~~~~~~V~~v~~~f~D~~G~~r~k~ip~~~~~~~~~~~-~~~g~~fdgss~~g~~----------~i~~sDm~l~Pd 74 (443)
T COG0174 6 VLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQL-FEGGVVFDGSSIAGFE----------GIGESDMVLKPD 74 (443)
T ss_pred HHHHHHhCCceEEEEEEECCCCCeeeEEEecccchhHHHhh-hccCcCcCCccccccC----------CCCCCCEEEeec
Confidence 446788999999999999999999999999993 4333 4567777665432100 014689999999
Q ss_pred cCCceeccCCCC-ccEEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCce-eeeeeeeEEEEEeecccCCCCCceeCCC
Q 005411 475 LSTRWRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLV-LNAGFEIEFYLLKSVLREGKEEWVPIDF 552 (698)
Q Consensus 475 ~sT~~~~Pw~~~-~a~V~~d~~~~dg~p~~~cPR~~L~r~~~~l~~~~G~~-~~~g~E~EF~l~~~~~~~g~~~~~p~~~ 552 (698)
++|++++||.++ +|+|+||+++++|+|++.|||++|||++++++ +.|+. +.+|+|+|||||++... +.....+.++
T Consensus 75 ~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~-~~G~~~~~~g~E~EFfLfd~~~~-~~~~~~~~~~ 152 (443)
T COG0174 75 LSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLK-DEGLAPAVVGPELEFFLFDRDGR-DPDGGRPADK 152 (443)
T ss_pred cCceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHH-hcCCccceeecceeEEEeecccC-CcccCccCCC
Confidence 999999999987 89999999999999999999999999999998 57997 59999999999997322 2212567788
Q ss_pred CCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 005411 553 TPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmp 632 (698)
++||+..+++...+++++|+..|+++||+||++|||+|||||||++++.++|++||+++++|++||+||++||++|||||
T Consensus 153 ~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMp 232 (443)
T COG0174 153 GGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMP 232 (443)
T ss_pred CcccCccccccHHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccccccc-CCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 005411 633 KFALDDIGSGSHVHLSLWQ-NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 633 KP~~~~~GsG~H~H~Sl~~-~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~ 698 (698)
||+.+.+|||||+|+|||+ +|+|+|+ |+++..+||+++++||||||+|+++++||+|||+|||+
T Consensus 233 KP~~g~~GSGMH~H~Sl~~~dg~nlF~--d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYk 297 (443)
T COG0174 233 KPFFGDNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYK 297 (443)
T ss_pred CCCCCCCCCceeEEEEEecCCCCcccc--CCCCcccHHHHHHHHHHHHHHHHHHHHhHhCCCcchhh
Confidence 9999999999999999995 6569999 56678899999999999999999999999999999996
No 3
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=4.5e-66 Score=573.43 Aligned_cols=284 Identities=25% Similarity=0.360 Sum_probs=249.8
Q ss_pred hhhccCCeeEEEEEEecCCCCceeEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEeecCCcee
Q 005411 401 SDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWR 480 (698)
Q Consensus 401 ~~~~~~~i~~v~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~ 480 (698)
..+++++|++|+++|+|++|++|+|.||+++|.+...++|++|+.+++. +....+.+|++|+||++|+++
T Consensus 8 ~~l~~~~i~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~----------g~~~~~~~D~~l~PD~~Tl~~ 77 (469)
T PRK09469 8 TMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIG----------GWKGINESDMVLMPDASTAVL 77 (469)
T ss_pred HHHHhCCCCEEEEEEECCCCCEeEEEEEHHHhhHHHhcCCceecccccc----------ccCcCCCCCEEEEEcCCccEE
Confidence 3456678999999999999999999999999985335789888876642 111136789999999999999
Q ss_pred ccCC-CCccEEEEEeecCC-CCcCCCChHHHHHHHHHHHHHhcCc--eeeeeeeeEEEEEeecc---c------------
Q 005411 481 IPWQ-KQEEMIMADMHLKP-GEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVL---R------------ 541 (698)
Q Consensus 481 ~Pw~-~~~a~V~~d~~~~d-g~p~~~cPR~~L~r~~~~l~~~~G~--~~~~g~E~EF~l~~~~~---~------------ 541 (698)
+||. +++++|+||+++.+ |+|++.|||++|||++++++ +.|+ ++++|+|+|||||+... .
T Consensus 78 ~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~ 156 (469)
T PRK09469 78 DPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-STGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIE 156 (469)
T ss_pred CCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-HcCCCcceeEecceEEEEEeccccccCccccccccccch
Confidence 9995 56899999999985 89999999999999999998 6799 99999999999998522 0
Q ss_pred ----------CCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCC-CCceEEecCcCchHHHHHHH
Q 005411 542 ----------EGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAG-KGQFEIALGHTVAAKAADNL 610 (698)
Q Consensus 542 ----------~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~g-pgQ~Ei~l~p~~~l~aaD~l 610 (698)
.+..+..|.+.+.||+..+++...+++++|++.|+++||+|+++|+|+| ||||||++.|.++|+|||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~ 236 (469)
T PRK09469 157 AAWNSGTKYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEI 236 (469)
T ss_pred hcccccccccCCCCCCccCCCccccCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHH
Confidence 0111234445555788888999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeeeccccCCCCCCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhh
Q 005411 611 IFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFT 690 (698)
Q Consensus 611 ~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~ 690 (698)
+++|++||+||++||+.|||||||+.+.+|||||+|+|||++|+|+|.+ + +..+||+++++||||||+|+++++||+
T Consensus 237 ~~~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~--~-~~~~ls~~~~~fiaGlL~h~~~l~a~~ 313 (469)
T PRK09469 237 QIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAG--D-KYAGLSEQALYYIGGIIKHAKAINALA 313 (469)
T ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCC--C-CcCCcCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999984 2 236799999999999999999999999
Q ss_pred cCCCCCCC
Q 005411 691 APVPNRLL 698 (698)
Q Consensus 691 ~Pt~nSY~ 698 (698)
+||+|||+
T Consensus 314 ~PtvNSYk 321 (469)
T PRK09469 314 NPTTNSYK 321 (469)
T ss_pred cCCCchHh
Confidence 99999995
No 4
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=5.5e-66 Score=569.12 Aligned_cols=281 Identities=29% Similarity=0.480 Sum_probs=245.7
Q ss_pred hccCCeeEEEEEEecCCCCceeEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEeecCCceecc
Q 005411 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIP 482 (698)
Q Consensus 403 ~~~~~i~~v~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~~P 482 (698)
+++++|++|+++|+|++|++|+|.||+++|++. .++|++|+.+++.+.. ...+.+|++|+||++|++++|
T Consensus 5 l~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~-~~~G~~~~~~~~~~~~---------~~~~~~D~~l~PD~~Tl~~~p 74 (435)
T TIGR03105 5 ARDKGIKYFLASFVDLHGVQKAKLVPAEAIDHM-ATGGAGFAGFAAWGLG---------QSPADPDLMAIPDLDSLTQLP 74 (435)
T ss_pred HhhCCCCEEEEEEECCCCCeeEEEEeHHHHHHH-HcCCCcccchhhhccC---------CCCCCCCEEEEeccccceeCC
Confidence 456689999999999999999999999999985 5789998876654311 012458999999999999999
Q ss_pred CCCCccEEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCC---CceeCCCCCcccCc
Q 005411 483 WQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE---EWVPIDFTPYCSTA 559 (698)
Q Consensus 483 w~~~~a~V~~d~~~~dg~p~~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~g~~---~~~p~~~~~~~~~~ 559 (698)
|.+++++|+||++. +|+|++.|||++|+|++++++ +.|+++++|+|+|||||+... ++.. ...+....++|+..
T Consensus 75 w~~~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~-~~G~~~~~g~E~EF~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (435)
T TIGR03105 75 WQPGVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAA-ELGLTLNTGVECEFFLLRRDE-DGSLSIADRADTLAKPCYDQR 151 (435)
T ss_pred CCCCeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCC-CCCcccCCCCCCCCccCCCCc
Confidence 99999999999976 899999999999999999998 689999999999999998632 2110 11111123356677
Q ss_pred cccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCCC
Q 005411 560 AYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDI 639 (698)
Q Consensus 560 ~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~ 639 (698)
+.+...+|+++|++.|+++||+||++|+|+|||||||++.|.++|+|||+++++|++||+||++||++|||||||+.+.+
T Consensus 152 ~~~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~~ 231 (435)
T TIGR03105 152 GLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADLT 231 (435)
T ss_pred chhhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCCC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccccccc-CCccccccCCCCCC--CCCcHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 005411 640 GSGSHVHLSLWQ-NGENVFMASDSSSK--HGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 640 GsG~H~H~Sl~~-~g~n~f~~~d~~~~--~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~ 698 (698)
|||+|+|+|||+ +|+|+|.+ ++++ .+||+++++||||||+|+|+++||++||+|||+
T Consensus 232 GsG~H~H~Sl~d~~g~n~f~d--~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYk 291 (435)
T TIGR03105 232 GNGCHFHLSLWDEDGRNLFAD--DSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYK 291 (435)
T ss_pred ccceEEEEeeecCCCcccccC--CCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCCcccc
Confidence 999999999995 79999994 3333 459999999999999999999999999999995
No 5
>PRK02925 glucuronate isomerase; Reviewed
Probab=100.00 E-value=6.9e-55 Score=469.06 Aligned_cols=361 Identities=16% Similarity=0.199 Sum_probs=305.4
Q ss_pred HHHHHhccCCccccCCCCccc---CC-----------------------CCcchhhcccccCCCC----C-CCCCcchh-
Q 005411 5 ELREVVENIELVDGHAHNIVS---LD-----------------------SSFPFIQSFSEATGPA----L-SYAPYSLS- 52 (698)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~---~~-----------------------~~~~~~~~~~ea~~~~----~-~~~~~~l~- 52 (698)
+|++..+++||||-|||---. ++ .+.|.+.|+.+|++.. . +.+|..+|
T Consensus 18 ~LY~~a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as~~ekf~~~a~t~p~~~Gn 97 (466)
T PRK02925 18 RLYHDAKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDASDREKFRAWAKTVPLFIGN 97 (466)
T ss_pred HHHHHHhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCCHHHHHHHHHHhhhhhcCC
Confidence 588789999999999998333 11 2357777777776532 1 24454444
Q ss_pred --HHHHHHHHHhhhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcc---
Q 005411 53 --FKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (698)
Q Consensus 53 --~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (698)
|.|+|+||+++|||++ ||++||+++|+ | ++++++|.|++++||++||| ||||+|+|+||++++.
T Consensus 98 PlyhW~hlELkr~FGi~~~l~~~nA~~Iwd~~n~~L~~p~f~~r~Ll~~~nVe~icT----TDDP~DdL~~H~~l~~d~~ 173 (466)
T PRK02925 98 PLYHWTHLELRRVFGITELLSPETADEIWDEINELLATPEFRPRALIERFNVEVICT----TDDPLDDLEYHKAIAEDGS 173 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHCCCCCCHHHHHHHCCceEEEe----cCCCCccHHHHHHHHhcCC
Confidence 7899999999999996 99999999998 5 89999999999999999999 9999999999998863
Q ss_pred ---------CCCeEEecchHHH-HHHHhhC--CCCCcccHHHHHHHHHHHHHhhcccccceeeeecc--ccCCCCCCC--
Q 005411 121 ---------FVGRILRIERLAE-EILDQAS--PDGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH-- 184 (698)
Q Consensus 121 ---------~~~~i~rie~~~~-~~~~~~~--~~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~-- 184 (698)
|||+++.|+...+ +++++|. +|.+|.+|++|++||++|+++ |++.||. +||++..++
T Consensus 174 f~~~VlPtfRPD~a~~i~~~~f~~~~~kL~~~~g~~i~~~~~ll~AL~~R~~~-------F~~~Gc~~sDHgl~~~~~~~ 246 (466)
T PRK02925 174 FDGRVLPTFRPDKAFNIEHEGFADYVEKLGEVTGTDITTFDGLLEALRKRRDY-------FAAHGCRSSDHGLDTVVTAE 246 (466)
T ss_pred CCceEecCcCCccccCCCchhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHcCCEEhhcCCCccCCCC
Confidence 8999999999876 7999884 788899999999999999985 5555555 799986655
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCCC----CCC
Q 005411 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLR----LSN 247 (698)
Q Consensus 185 ~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~------------G-~~~~~~~----~~~ 247 (698)
++.+||+++|+|+++++.....+...+..++++.+.+++.|.||+||+|.|+ | |+|.|.. .+.
T Consensus 247 ~~~~e~~~if~k~~~g~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~lG~DtG~Dsi~d~~~a~ 326 (466)
T PRK02925 247 LSEAEADAIFAKALAGGTLTEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKLGPDTGFDSIGDTPIAE 326 (466)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHhCCCCCcCCCCchhHHH
Confidence 7899999999999986544555667778888888999999999999999998 4 4565543 333
Q ss_pred cc--chHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCe------eeeecccccCcccHHHHHHHHHHHHhhCCCCc
Q 005411 248 PL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ------VYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319 (698)
Q Consensus 248 p~--~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pn------Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~k 319 (698)
++ +|+.+-+.+++|+++++.+++.+ ..+.+.|+++||+ ||++.+|||++. ++||++++..+.+.+++++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~--n~~lat~~g~F~~~~~~gkvq~Ga~WWFnD~-~~GM~~ql~~la~~glls~ 403 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTD--NEELATMAGNFQGLGIPGKMQFGAGWWFNDQ-KDGMERQMEQLAETGLLSN 403 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCccc--HHHHHHHHcccCCCCCCCccccccchhhccC-HHHHHHHHHHHHhccchhh
Confidence 43 57777777899999999999976 3478999999975 599999999875 8999999999999999999
Q ss_pred EE-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhH--HHHHHHHHHHHHHHHHhcCC
Q 005411 320 VM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE--AIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 320 il-fgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~e--a~~~~~~Il~~NA~rly~l~ 381 (698)
++ |.||||+|.+ |++|++|||+||++|++||++|++|.++ +++++++|||+||+++|++.
T Consensus 404 fvGmltDSRsflS--y~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na~~yF~~~ 466 (466)
T PRK02925 404 FVGMLTDSRSFLS--YARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNAKRYFKLE 466 (466)
T ss_pred cccccccHHHHHh--hhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhHHHhcCCC
Confidence 99 9999999995 6999999999999999999999998555 69999999999999999863
No 6
>PLN02284 glutamine synthetase
Probab=100.00 E-value=1.3e-54 Score=466.81 Aligned_cols=260 Identities=21% Similarity=0.223 Sum_probs=218.7
Q ss_pred eeEE--EEEEecCCCCceeEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEeecCCceeccCCC
Q 005411 408 VSLI--RVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (698)
Q Consensus 408 i~~v--~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~~Pw~~ 485 (698)
++|| +++|+|+.|.+|+..+|.+.+++. .|++|++++.++. . .+.+|++|+|| |++++||.+
T Consensus 21 ~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~---~~~~fdGssi~~~-------~----~~~sD~~l~PD--t~~~~Pw~~ 84 (354)
T PLN02284 21 AEYIWIGGSGMDLRSKARTLPGPVTDPSKL---PKWNYDGSSTGQA-------P----GEDSEVILYPQ--AIFKDPFRG 84 (354)
T ss_pred EEEEEEEEEecCCCCceEEecccccccccC---CceeecCCCCCCc-------c----CCCceEEEEcc--EEEECCCCC
Confidence 4555 778999999999999999988763 7999988876431 1 24679999999 999999975
Q ss_pred -CccEEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeeccc--CCCC-CceeCCCCCcccCccc
Q 005411 486 -QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAY 561 (698)
Q Consensus 486 -~~a~V~~d~~~~dg~p~~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~--~g~~-~~~p~~~~~~~~~~~~ 561 (698)
++++|+||++++||+|++.|||++|||++++++ +.|+++++|+|+|||||+.... .|.+ +..|.++++||...+.
T Consensus 85 ~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~-~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~ 163 (354)
T PLN02284 85 GNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPD-VAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGA 163 (354)
T ss_pred CCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcch
Confidence 578999999999999999999999999999998 4899999999999999985211 1111 1145566777765543
Q ss_pred --cCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC-C
Q 005411 562 --DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALD-D 638 (698)
Q Consensus 562 --~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~-~ 638 (698)
....++++++.+.|+++||+|+++|||+|||||||++.|.++|+|||+++++|++||+||++||++|||||||+.+ .
T Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~ 243 (354)
T PLN02284 164 DKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDW 243 (354)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCC
Confidence 3347899999999999999999999999999999999999999999999999999999999999999999999886 5
Q ss_pred CCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHH-HHHHHHhhhhhcCCCCCCC
Q 005411 639 IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGV-LHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 639 ~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGl-L~h~~al~a~~~Pt~nSY~ 698 (698)
+|||||+|+|||+..++ +.+...+++++|+ |+|+++|+||++ |||+
T Consensus 244 ~GSGmH~H~SL~~~~~~-----------gg~~~~~~~l~~~~l~h~~~l~a~~~---NSYk 290 (354)
T PLN02284 244 NGAGAHTNYSTKSMRED-----------GGYEVIKKAIEKLGLRHKEHIAAYGE---GNER 290 (354)
T ss_pred ccCcceeecChhhcccC-----------CcHHHHHHHHHHHHHHHHHHhhhhhc---CcHh
Confidence 99999999999962110 0123457889999 999999999997 9995
No 7
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-51 Score=428.69 Aligned_cols=359 Identities=17% Similarity=0.217 Sum_probs=302.1
Q ss_pred HHHHHhccCCccccCCCCcccC---C-----------------------CCcchhhcccccCCCC----C-CCCCcchh-
Q 005411 5 ELREVVENIELVDGHAHNIVSL---D-----------------------SSFPFIQSFSEATGPA----L-SYAPYSLS- 52 (698)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~~---~-----------------------~~~~~~~~~~ea~~~~----~-~~~~~~l~- 52 (698)
.|...+.++||||.|||--=.+ + .+.+-+.++.++++.. . +.++.+.|
T Consensus 17 ~l~~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itgd~sdrEkw~afa~~~~~~~Gn 96 (463)
T COG1904 17 RLHAYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITGDTSDREKWRAFAKTVPLFIGN 96 (463)
T ss_pred HHHHhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCCCCChHHHHHHHHHhhhhhcCC
Confidence 5677899999999999954321 0 1234444555444421 1 24454444
Q ss_pred --HHHHHHHHHhhhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcc---
Q 005411 53 --FKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (698)
Q Consensus 53 --~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (698)
|.|+|++|+++|||++ |+++||+++|+ | ++++++|.|++++||++||| ||||+++|+||+++++
T Consensus 97 P~y~W~hlel~r~FgI~e~ls~~tad~iwd~~n~~La~~~frpRaL~~~~NVevv~T----TDdP~dsL~~H~~l~~d~~ 172 (463)
T COG1904 97 PLYHWTHLELERVFGITELLSEETADEIWDEINDLLAQPDFRPRALIEQFNVEVVCT----TDDPIDSLEYHKELAEDGF 172 (463)
T ss_pred cchhhhHHHHhhhcCcccccCcccHHHHHHHHHHHhCCCCCCHHHHHHHcCeeEEec----CCCCcccHHHHHHHHhcCC
Confidence 7889999999999997 99999999999 5 88999999999999999999 9999999999999976
Q ss_pred --------CCCeEEecchHHH-HHHHhhC--CCCCcccHHHHHHHHHHHHHhhcccccceeeeecc--ccCCCCCCC--C
Q 005411 121 --------FVGRILRIERLAE-EILDQAS--PDGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH--V 185 (698)
Q Consensus 121 --------~~~~i~rie~~~~-~~~~~~~--~~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~--~ 185 (698)
|||+++.||...+ ++++++. +|.++.+|++|++|+++|+++ ||+.||. +||++..+. .
T Consensus 173 ~~~VlPa~RPD~~~~i~~~gf~~~~~kL~~~ag~~~~~~~~~l~Al~~R~~~-------F~~~G~~sSDH~l~t~~~a~~ 245 (463)
T COG1904 173 HGRVLPAWRPDAAVDIERAGFADYVEKLGEVAGTDISTWDGYLDALRKRREY-------FKSHGATSSDHGLDTADTAEL 245 (463)
T ss_pred CceeccCcCCccccCCCccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-------HHHcCCcccccCCCccccccC
Confidence 8999999999876 8888884 777899999999999999984 7777777 699987766 7
Q ss_pred CHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCC----CCCCc
Q 005411 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDL----RLSNP 248 (698)
Q Consensus 186 ~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~------------G-~~~~~~----~~~~p 248 (698)
+.++|+++|.|.+++......+...+..+++..+.++.++.||+||+|+|. | |.|+|. .++++
T Consensus 246 ~~~~a~~if~k~l~G~~lt~~E~~~f~a~~l~~l~km~~~~gwVmQiH~ga~RN~n~~~~~k~G~D~GfDi~~~~~~a~~ 325 (463)
T COG1904 246 SEADADAIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPDTGFDIPNDTEIAEG 325 (463)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhcCeeEEecccccccCCHHHHHHhCCCCCCCCCCcchhHHH
Confidence 899999999999997655555666677777777778889999999999998 4 456554 34555
Q ss_pred c--chHHHHhhcCCCCcEEEEecCCCcchHHHHHHHH------hCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcE
Q 005411 249 L--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV 320 (698)
Q Consensus 249 ~--~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~------~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~ki 320 (698)
+ +|+.+-.++++|++.++++++.+ .++.+.|++ .+|+++++.+|||++. ++||+++++.+.++++++++
T Consensus 326 L~~LLd~~~~~~~L~k~ily~lnp~~--~~~latm~g~fq~~~~~~~~q~G~~WWFnD~-~dGM~r~~e~la~~gl~~nf 402 (463)
T COG1904 326 LKPLLDAFGEDNDLPKTILYLLNPND--NEVLATMAGNFQGEGVSPKLQFGPAWWFNDS-KDGMERQREQLASLGLLSNF 402 (463)
T ss_pred HHHHHHhhcccCCCceEEEEecCCch--hHHHHHHHhhccccccCcccccCcchhhcCC-hHHHHHHHHHHHHHHHHHhh
Confidence 5 67777777899999999999987 456889998 7899999999999864 89999999999999999999
Q ss_pred E-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHH--HHHHHHHHHHHHHHHhc
Q 005411 321 M-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA--IEVAKDIFALNAAQFYK 379 (698)
Q Consensus 321 l-fgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea--~~~~~~Il~~NA~rly~ 379 (698)
+ |.||+|+|++ |++|++|||++|+++++||++|+++.++| ..+...|+|+|++.+|.
T Consensus 403 vGmltDsRsflS--y~Rhe~fRRilC~~igr~veeg~~p~dea~~~~~~~~i~y~n~~~~f~ 462 (463)
T COG1904 403 VGMLTDSRSFLS--YTRHEYFRRILCALIGRWVEEGEIPRDEALLGVIVKNICYNNAVDYFA 462 (463)
T ss_pred hcccccchhhhc--ccHHHHHHHHHHHHHHHHHHcCCCCcchHHhhhhhhhcccccHHHHhc
Confidence 9 9999999996 67999999999999999999999999997 77788899999999885
No 8
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=2.9e-51 Score=425.98 Aligned_cols=193 Identities=42% Similarity=0.719 Sum_probs=168.0
Q ss_pred CCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCC--Ccee----CCCCCcccCccccCchHHHHHHHHHHH
Q 005411 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE--EWVP----IDFTPYCSTAAYDAVSPVFQEVLADLH 576 (698)
Q Consensus 503 ~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~g~~--~~~p----~~~~~~~~~~~~~~~~~~~~~i~~~l~ 576 (698)
+.|||++|||++++++ +.|+++++|+|+|||||++....+.+ ...+ ...+++|+....+...+++++|++.|+
T Consensus 1 ~~~PR~~Lkr~~~~~~-~~g~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 79 (259)
T PF00120_consen 1 EACPRSILKRVLERLE-EMGLSFKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSPLDAGEDFLEEIVDALE 79 (259)
T ss_dssp -T-HHHHHHHHHHHHH-HTCCEEEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhCCceEEEEeEEEEEeccCcccccccccccccccccccCCcCCCchhhHHHHHHHHHHHHHH
Confidence 4799999999999998 58999999999999999984332222 1122 135678888888899999999999999
Q ss_pred hCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCCCCccccccccccc--CCc
Q 005411 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQ--NGE 654 (698)
Q Consensus 577 ~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~--~g~ 654 (698)
++||+||++|+|+|||||||++.|.++|+|||+++++|++||+||++||++|||||||+.+.+|||+|+|+|||+ +|+
T Consensus 80 ~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~~g~ 159 (259)
T PF00120_consen 80 QAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAKDGK 159 (259)
T ss_dssp HCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHHTTE
T ss_pred HhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 005411 655 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 655 n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~ 698 (698)
|+|. |++++.+||+++++||||||+|+++|+||++||+|||+
T Consensus 160 n~f~--~~~~~~~ls~~~~~flaGll~h~~~l~a~~~pt~nsyk 201 (259)
T PF00120_consen 160 NLFY--DPDGPAGLSELARHFLAGLLKHAPALTAFTAPTVNSYK 201 (259)
T ss_dssp ETTB--STTSHGHHHHHHHHHHHHHHCHHHHHHHCHSTSTTHHH
T ss_pred cccc--cccccccccHHHHHHHHHHHHHHHHHHhhhCccCcchh
Confidence 9999 45555789999999999999999999999999999994
No 9
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=4.9e-50 Score=436.30 Aligned_cols=258 Identities=22% Similarity=0.291 Sum_probs=211.4
Q ss_pred EEEEEEecCCC-CceeEEE----echhhhhHHhhcccccccccccccccCCCCCCCCCCCCCccEEEEeecCCceeccCC
Q 005411 410 LIRVIWVDASG-QHRCRVV----PVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQ 484 (698)
Q Consensus 410 ~v~~~~~D~~G-~~R~k~v----p~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~~Pw~ 484 (698)
.+.+.|+|.+| -+|||+- |.+.+++. .|++|++++.++. + .+.+|++|+|| |++++||.
T Consensus 80 ~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~---~~w~fDGSs~g~a-------~----~~~sD~~l~PD--Tl~~~Pw~ 143 (432)
T PLN03036 80 IAEYIWIGGSGIDLRSKSRTISKPVEHPSEL---PKWNYDGSSTGQA-------P----GEDSEVILYPQ--AIFKDPFR 143 (432)
T ss_pred EEEEEEeCCCCCCCCCCeEEeCccccccccC---CceeeecCccCCC-------c----CCCCCEEEEcc--EEEECCcC
Confidence 56666778777 4666655 44555442 6888888765421 1 25689999999 99999996
Q ss_pred C-CccEEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeeccc--CCCC-CceeCCCCCcccCcc
Q 005411 485 K-QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAA 560 (698)
Q Consensus 485 ~-~~a~V~~d~~~~dg~p~~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~--~g~~-~~~p~~~~~~~~~~~ 560 (698)
+ ++++|+||++++||+|++.|||++|++++++++ ..|+++++|+|+|||||+.... .|.+ ...|.++++||...+
T Consensus 144 ~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~-~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~ 222 (432)
T PLN03036 144 GGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKK-VVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAG 222 (432)
T ss_pred CCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhc-ccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCch
Confidence 4 578999999999999999999999999999987 4699999999999999985211 1211 234556777776665
Q ss_pred ccC--chHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCC-
Q 005411 561 YDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALD- 637 (698)
Q Consensus 561 ~~~--~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~- 637 (698)
.+. ..+++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.|||||||+.+
T Consensus 223 ~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd 302 (432)
T PLN03036 223 ADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGD 302 (432)
T ss_pred hhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCC
Confidence 554 58999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHH-HHHHHHHhhhhhcCCCCCCC
Q 005411 638 DIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAG-VLHHLSSILAFTAPVPNRLL 698 (698)
Q Consensus 638 ~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaG-lL~h~~al~a~~~Pt~nSY~ 698 (698)
.+|||||+|+|||+..++ +++ ...+++++| +|+|+++|+|+++ |||+
T Consensus 303 ~~GSGmHiH~Sl~d~r~~----------gg~-~~~~~~i~gl~l~H~~~i~A~~~---Nsyk 350 (432)
T PLN03036 303 WNGAGCHTNYSTKSMREE----------GGF-EVIKKAILNLSLRHKEHISAYGE---GNER 350 (432)
T ss_pred cCCCCceeEechhhcccc----------chH-HHHHHHHhhHHHHHHHHHHhhhc---Chhh
Confidence 599999999999962211 011 346688888 9999999999999 9995
No 10
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=100.00 E-value=7.8e-49 Score=430.21 Aligned_cols=359 Identities=17% Similarity=0.185 Sum_probs=267.2
Q ss_pred HHHHHH-hccCCccccCCCCcccC---C-----------------------CCcchhhcccccCCCC----CC-CCC---
Q 005411 4 EELREV-VENIELVDGHAHNIVSL---D-----------------------SSFPFIQSFSEATGPA----LS-YAP--- 48 (698)
Q Consensus 4 ~~l~~~-i~~~p~iD~H~H~~~~~---~-----------------------~~~~~~~~~~ea~~~~----~~-~~~--- 48 (698)
.+|++- ++++||||-|||-.-.. + .+.|.+-++++++... .+ ..|
T Consensus 16 ~~Ly~~~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg~a~~~ekF~a~a~~~~~~~ 95 (462)
T PF02614_consen 16 RRLYHEYAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITGDASPREKFRAWAETVPRFI 95 (462)
T ss_dssp HHHHHHCCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTCSSSHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhhhhc
Confidence 456664 89999999999966441 1 1235444555433221 11 222
Q ss_pred cchhHHHHHHHHHhhhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcc-
Q 005411 49 YSLSFKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP- 120 (698)
Q Consensus 49 ~~l~~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~- 120 (698)
-+--|.|+|++|+++|||++ |+++||+++|+ + ++++++|.|++++||++||| ||||+|+++||+.++.
T Consensus 96 gnp~~~W~hleL~r~FGid~~L~~~~a~~I~d~~n~~l~~~~~~~r~l~~~~nV~~v~T----TDDP~D~L~~H~~l~~~ 171 (462)
T PF02614_consen 96 GNPLYHWTHLELKRYFGIDEPLSEENADEIWDACNEKLATPEFSPRALLRRSNVEVVCT----TDDPLDDLEYHRWLAED 171 (462)
T ss_dssp TSHHHHHHHHHHHHCTT--C-GSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEE------B-TTSHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHhcccCcCHHHHHHHCCceEEEe----CCCCCCchHHHHHHhcc
Confidence 23347889999999999996 99999999998 4 99999999999999999999 9999999999999973
Q ss_pred -----------CCCeEEecchHHH-HHHHhhC--CCCCcccHHHHHHHHHHHHHhhcccccceeeeecc--ccCCCCCCC
Q 005411 121 -----------FVGRILRIERLAE-EILDQAS--PDGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH 184 (698)
Q Consensus 121 -----------~~~~i~rie~~~~-~~~~~~~--~~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~ 184 (698)
|||+++.|+...+ ++++++. +|.+|.++++|++|+++|+++ |++.+|. +||++..++
T Consensus 172 ~~~~~~v~PtfRpD~~l~i~~~~~~~~l~~L~~~~g~~i~~~~~l~~Al~~r~~~-------F~~~G~~~sDh~l~~~~~ 244 (462)
T PF02614_consen 172 ENFDPRVLPTFRPDKALNIDWPGFADYLEKLGEAAGIEISTFEDLLEALRKRRDY-------FKEMGCRASDHGLPDFPF 244 (462)
T ss_dssp CCT-TEEE-EBEGHHHHHTTSTTHHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-------HHHTT-SEEEEEESS--S
T ss_pred CCCCceEecccCcccccCCChhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHhCCeEeecCCCcccC
Confidence 7899999988766 8888884 778899999999999999995 5555665 699985555
Q ss_pred --CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCCCCC---
Q 005411 185 --VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRLS--- 246 (698)
Q Consensus 185 --~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~------------G-~~~~~~~~~--- 246 (698)
++.+|++++|.|+++++.....+...+..++++.+.++|+|+|||||+|.|+ | |+|.|....
T Consensus 245 ~~~~~~e~~~if~k~~~g~~ls~~e~~~~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~ 324 (462)
T PF02614_consen 245 PPPSEEEAERIFKKALAGESLSAEEIDKFRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPD 324 (462)
T ss_dssp S---HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--H
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHH
Confidence 6889999999999987666666777888889999999999999999999998 3 344443222
Q ss_pred -Ccc--chHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCC-----eeeeecccccCcccHHHHHHHHHHHHhhCCCC
Q 005411 247 -NPL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-----QVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318 (698)
Q Consensus 247 -~p~--~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~p-----nVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~ 318 (698)
.++ +|+.+-+.+++|++.++++++. +..+++.+|++|| |||++.+|||++. ++||+++++.+.+.++.+
T Consensus 325 ~~~L~~ll~~~~~~~~lpk~ily~Ln~~--~~~~la~lag~F~~~~~~~vq~G~~WWF~D~-~~gm~~q~~~~~~~~ll~ 401 (462)
T PF02614_consen 325 AEALSRLLDRFDNNGKLPKTILYSLNPT--DNHELATLAGNFQDGGIPKVQLGGAWWFNDT-PDGMERQMTALAEMGLLS 401 (462)
T ss_dssp HHHHHHHHHHHTTTTT-SEEEEEESSGG--GHHHHHHHHHHST-TTSTTEEEB---GGG-S-HHHHHHHHHHHHHHCHGC
T ss_pred HHHHHHHHHhccccCCCceeEEEecChh--hHHHHHHHHhhcCCcCcceeeecCcccccCC-HHHHHHHHHHHHHHhCcc
Confidence 221 3444444557778888888886 5678999999999 9999999999876 889999999999999999
Q ss_pred cEE-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHH--HHHHHHHHHHHHHHHh
Q 005411 319 KVM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA--IEVAKDIFALNAAQFY 378 (698)
Q Consensus 319 kil-fgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea--~~~~~~Il~~NA~rly 378 (698)
|++ |.||||+|.+ |++|++|||+||++|++||++|++|.+++ ++++++|||+||+++|
T Consensus 402 ~fvGmltDsRsflS--~~RheyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 402 NFVGMLTDSRSFLS--YPRHEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp GCB------SCTTH--HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred ceeceecchHHHhh--hhHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 999 9999999996 58999999999999999999999999997 4999999999999986
No 11
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=99.92 E-value=9.7e-25 Score=224.80 Aligned_cols=232 Identities=22% Similarity=0.334 Sum_probs=180.2
Q ss_pred hccCCeeEEEEEEecCCC-CceeEEEechhhhhHHhhc-ccccccccccccccCCCCCCCCCCCCCccEEEEeecCCcee
Q 005411 403 AFESDVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKY-GVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWR 480 (698)
Q Consensus 403 ~~~~~i~~v~~~~~D~~G-~~R~k~vp~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~ 480 (698)
-..++-..+.+.|+|-+| .+|+|+-..+.-.+.+.+. -..++.++ ++.+. +..+|.+|+|. .+.+
T Consensus 24 ~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgss-------t~QA~----g~nSd~~l~Pv--a~~~ 90 (380)
T KOG0683|consen 24 RAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSS-------TGQAP----GENSDVYLRPV--AIYP 90 (380)
T ss_pred cccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcc-------ccccc----CCCCceEEeeh--hhcC
Confidence 344455678889999999 8888887665443322211 11222221 11111 24589999999 7889
Q ss_pred ccCCCC-ccEEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCC-Cc----eeCCCCC
Q 005411 481 IPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE-EW----VPIDFTP 554 (698)
Q Consensus 481 ~Pw~~~-~a~V~~d~~~~dg~p~~~cPR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~g~~-~~----~p~~~~~ 554 (698)
.|+..+ ..+|+|+.++.+|+|.+..-|....+++.... -..-++++|.|.|+.+++.. .+.+ +| -|..++.
T Consensus 91 dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~-~~~~~PWfg~Eqeyt~l~~~--~~~p~gwp~~GFp~Pqgp 167 (380)
T KOG0683|consen 91 DPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLS-TKDTEPWFGMEQEYTLLDAL--DGHPFGWPKGGFPGPQGP 167 (380)
T ss_pred CcccCCCCEEEEeeccCCCCCcccccchhhHHHHhcccc-ccccCCchhhhHHHhhhccc--cCCcccCCccCCCCCCCC
Confidence 999765 47899999999999999999999999999875 24568999999999999872 2211 12 2445666
Q ss_pred cccCccccC--chHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 005411 555 YCSTAAYDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (698)
Q Consensus 555 ~~~~~~~~~--~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmp 632 (698)
|+...+.++ ..++.+.-..++--.||.+...+.|+.||||||++.|+.++.++|+++++|+++++||+++|+.|||.|
T Consensus 168 yyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~p 247 (380)
T KOG0683|consen 168 YYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDP 247 (380)
T ss_pred ceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecC
Confidence 665444443 467888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCcccccccccc
Q 005411 633 KFALDD-IGSGSHVHLSLW 650 (698)
Q Consensus 633 KP~~~~-~GsG~H~H~Sl~ 650 (698)
||..+. +|+|+|.++|..
T Consensus 248 Kp~~g~WngaG~Htn~ST~ 266 (380)
T KOG0683|consen 248 KPILGDWNGAGCHTNFSTK 266 (380)
T ss_pred CCCCCcccCcccccccchh
Confidence 997764 899999999883
No 12
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.89 E-value=3.6e-22 Score=210.64 Aligned_cols=154 Identities=31% Similarity=0.403 Sum_probs=126.1
Q ss_pred ccCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCC--CCccchHHHHhhcCCCCcEEEEecCC--CcchHHHHH
Q 005411 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHAS--YPFSKEASY 280 (698)
Q Consensus 205 ~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~--~~p~~L~~l~~~~~~P~~~~vllH~g--~p~~~e~~~ 280 (698)
.......++..++|+++.|+++|+||++|+|.++.+..... ++|++++++++ +||+++||++|+| +||..++.+
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~--~fP~l~IVl~H~G~~~p~~~~a~~ 212 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVAR--KFPELKIVLGHMGEDYPWELEAIE 212 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHH--HCCCCcEEEEecCCCCchhHHHHH
Confidence 33445566777999999999999999999999876666655 89999999999 7999999999999 999999999
Q ss_pred HHHhCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChh
Q 005411 281 LAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVG 360 (698)
Q Consensus 281 la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ 360 (698)
+|..+||||+|+|.+.+.+..+ ..++.+.+ .+.+||||||| ||...+ ..+.+... .++.+
T Consensus 213 ~a~~~~nvy~d~s~~~~~~~~~---~~~~~~~~-~~~dkilFGSD---~P~~~~--~~~l~~~~-----------~l~l~ 272 (293)
T COG2159 213 LAYAHPNVYLDTSGVRPKYFAP---PLLEFLKE-LGPDKILFGSD---YPAIHP--EVWLAELD-----------ELGLS 272 (293)
T ss_pred HHHhCCCceeeeeccccccCCh---HHHHHHHh-cccCeEEecCC---CCCcCH--HHHHHHHH-----------hcCCC
Confidence 9999999999999997755322 57888888 88899999999 886432 22332221 34445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 005411 361 EAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 361 ea~~~~~~Il~~NA~rly~l~~ 382 (698)
+ +.+++|+++||+|||+|+.
T Consensus 273 ~--e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 273 E--EVKEKILGENAARLLGLDP 292 (293)
T ss_pred H--HHHHHHHHHhHHHHhCcCC
Confidence 5 8899999999999999864
No 13
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.74 E-value=1.1e-18 Score=181.71 Aligned_cols=178 Identities=28% Similarity=0.338 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcC--CCC----ccCchhhhhHHHH-HHHHHHhhCCCcEEEecC-CCCCCCCCCCCCccchHHHHhh
Q 005411 186 TKKDAEEGLAEDLRSG--KPV----RITNKSLIDYIFI-SSLEVAQFLDLPLQIHTG-FGDKDLDLRLSNPLHLRAILED 257 (698)
Q Consensus 186 ~~~ea~~~~~~~l~~~--~~~----~~~~~~l~d~~~~-~~~e~a~e~glpvq~H~G-~G~~~~~~~~~~p~~L~~l~~~ 257 (698)
..+++.+.+.+++... .+. ........+..+. ++|+.|+|+|+||.+|+| .+..+......+|..+..+++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~- 160 (273)
T PF04909_consen 82 DPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLE- 160 (273)
T ss_dssp SHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH-
T ss_pred CchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHH-
Confidence 3555566666666321 111 1122233444444 899999999999999988 221111233456778888998
Q ss_pred cCCCCcEEEEecCCCc--chHHHHHHHHhCCeeeeecccccCc---ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc
Q 005411 258 KRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPK---LSVQGMISSIKELLELAPTKKVMFSTDAYASPET 332 (698)
Q Consensus 258 ~~~P~~~~vllH~g~p--~~~e~~~la~~~pnVy~d~s~~~~~---~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~ 332 (698)
+||+++||+.|+|.+ +..++..++.++||||+|+|+..+. .........+..+++..+.+||||||| ||..
T Consensus 161 -~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD---~P~~ 236 (273)
T PF04909_consen 161 -RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSD---YPHP 236 (273)
T ss_dssp -HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE-----TTSS
T ss_pred -HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCC---CCCC
Confidence 899999999999999 8889999999999999999996421 112233457888888888999999999 6643
Q ss_pred hhhhH-HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005411 333 YFLGA-KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 333 ~~~~~-~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (698)
..... ..+.. . .... .++ + +..++|+++||+|+|+|
T Consensus 237 ~~~~~~~~~~~-~--~~~~-----~l~--~--~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 237 DGASPYEYIWE-A--YFLD-----DLS--E--EEREKILYDNARRLYGL 273 (273)
T ss_dssp THHHHHHHHHH-H--HHHH-----HSS--H--HHHHHHHTHHHHHHHTC
T ss_pred CccccHHHHHH-h--hhcc-----CCC--H--HHHHHHHhHhHHHHcCc
Confidence 22111 11111 1 1100 033 3 78999999999999986
No 14
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=152.21 Aligned_cols=137 Identities=29% Similarity=0.381 Sum_probs=115.2
Q ss_pred eeeeeeeeEEEEEeecccCCCCCc---------eeCCC-----CCcccCccccCchHHHHHHHHHHHhCCCceeeeecCC
Q 005411 524 VLNAGFEIEFYLLKSVLREGKEEW---------VPIDF-----TPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEA 589 (698)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~g~~~~---------~p~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~ 589 (698)
-..+|.|+|+||+++...+..++. .|..+ -||+...+ +.++.|+.++-..|.++||++..-|.|+
T Consensus 215 ~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip-eRV~~FM~Dve~~LyaLGIpaKTrHNEV 293 (724)
T COG3968 215 FSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP-ERVSAFMKDVEKELYALGIPAKTRHNEV 293 (724)
T ss_pred ccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH-HHHHHHHHHHHHHHHHcCCccccccccc
Confidence 467999999999987322222211 11112 25666444 5678999999999999999999999999
Q ss_pred CCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCCCCcccccccccc-cCCccccccCC
Q 005411 590 GKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW-QNGENVFMASD 661 (698)
Q Consensus 590 gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~-~~g~n~f~~~d 661 (698)
+||||||.--+.++--|+|.-.+..+++|.+|++||+..-++-|||.+.+|||-|.|+|+- ++|.|+..++|
T Consensus 294 APgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD 366 (724)
T COG3968 294 APGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGD 366 (724)
T ss_pred CCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCcCCCCCccccccccCCCcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 58899987644
No 15
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.44 E-value=2.4e-13 Score=116.52 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=64.9
Q ss_pred CeeEEEEEEecCCCCceeEEEechhhhhHHhhcccccccccc-cccccCCCCCCCCCCCCCccEEEEeecCCceeccCCC
Q 005411 407 DVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (698)
Q Consensus 407 ~i~~v~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~gd~~L~PD~sT~~~~Pw~~ 485 (698)
+|+||+++|+|+.|.+|++++|++++.+.+.+.|++|+++++ ++.. ...+|++|+||++|++++||.+
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~-----------~~~SDm~l~Pd~~t~~~~P~~~ 69 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFAT-----------IEESDMYLKPDPSTFFIDPWRP 69 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSB-----------SCCEEEEEEEEGGEEEESTTTS
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCccc-----------CCCCCEEEecCcccEEECccCC
Confidence 589999999999999999999999994334678999998886 4321 1357999999999999999996
Q ss_pred C---ccEEEEEeecC
Q 005411 486 Q---EEMIMADMHLK 497 (698)
Q Consensus 486 ~---~a~V~~d~~~~ 497 (698)
+ +++|+||+|++
T Consensus 70 ~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 70 DPGKTARVICDVYDP 84 (84)
T ss_dssp TT-TEEEEEEEEEST
T ss_pred CCceEEEEEEEeECc
Confidence 5 69999999974
No 16
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.38 E-value=2.4e-12 Score=134.54 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcc---------hHHHHHHHH
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF---------SKEASYLAY 283 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~---------~~e~~~la~ 283 (698)
+..+.++++.|+++|+|+++|+|... -..+..+++ +| +++||+.|+|.|+ ..+...++
T Consensus 109 ~~~~~~~~~~~~~~gl~v~~~~~~~~---------l~~l~~l~~--~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l- 175 (263)
T cd01311 109 KDELDEIAKRAAELGWHVQVYFDAVD---------LPALLPFLQ--KL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLI- 175 (263)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCHhh---------HHHHHHHHH--HC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHH-
Confidence 34456789999999999999997531 124677888 78 9999999999765 23445556
Q ss_pred hCCeeeeecccccCc----ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhh---hHHHHHHHHHHHHHhhhhcCC
Q 005411 284 VYPQVYLDFGLAIPK----LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL---GAKRAREVVFSVLRDTCIDED 356 (698)
Q Consensus 284 ~~pnVy~d~s~~~~~----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~---~~~~~R~~l~~vl~~~v~~g~ 356 (698)
.+||||+|+|++... .....+...++.+++. +.+|+||||| ||.+... ........+. .+.+ .
T Consensus 176 ~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD---~P~~~~~~~~~~~~~~~~~~-~~~~-----~ 245 (263)
T cd01311 176 EEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTD---WPHPRLREPDPMPDDGALLR-LIPS-----W 245 (263)
T ss_pred hcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCC---CCCCCccccCCCCCHHHHHH-HHHH-----H
Confidence 899999999986421 1234566788888877 7899999999 7754211 1011112221 1112 2
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 005411 357 LSVGEAIEVAKDIFALNAAQF 377 (698)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rl 377 (698)
++ ++ +.+++|+++||+||
T Consensus 246 ~~-~~--~~~~~~~~~n~~~~ 263 (263)
T cd01311 246 AP-DA--QLQRKNLVDNPARL 263 (263)
T ss_pred cC-CH--HHHHHHHHhChhhC
Confidence 23 22 67999999999985
No 17
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=117.37 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=97.2
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCc---------chHHHHHHHHhCC
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP---------FSKEASYLAYVYP 286 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p---------~~~e~~~la~~~p 286 (698)
+...++....+||++.+++-.- ..|. +-.++. ..|+++||+-|+|.| |...+..|+ ..|
T Consensus 126 ~r~~~~rL~~~gl~fdl~~~~~--------ql~~-~i~l~~--~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-~~p 193 (279)
T COG3618 126 WRANVERLAKLGLHFDLQVDPH--------QLPD-LIPLAL--KAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-RRP 193 (279)
T ss_pred HHHHHHHHHhcCCeEEEEeChh--------hhHH-HHHHHh--hCCCCCEEeccCCCCCccccccCHHHHHHHHHH-hCC
Confidence 3444677789999999998421 1222 333444 699999999999976 334444454 789
Q ss_pred eeeeecccccCcc----cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHH
Q 005411 287 QVYLDFGLAIPKL----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA 362 (698)
Q Consensus 287 nVy~d~s~~~~~~----~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea 362 (698)
|||+.+|+..-+. .+...+.+.+.+++.+|.+|+||||| ||-+.+.+. + ..+.....++|.. +.
T Consensus 194 Nv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSd---wPv~~l~~~--~-~~~~~~~~~~v~~-----~~- 261 (279)
T COG3618 194 NVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSD---WPVTSLESD--F-ASWVAATRELVPG-----DA- 261 (279)
T ss_pred CeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCC---CCcccccCC--h-HHHHHHHHHHcCC-----CH-
Confidence 9999999864322 24456778999999999999999999 887654441 1 1122333444321 23
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 005411 363 IEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 363 ~~~~~~Il~~NA~rly~l 380 (698)
+...+||++||+|+|++
T Consensus 262 -~er~~i~~~NA~rly~~ 278 (279)
T COG3618 262 -AERARILVDNARRLYRL 278 (279)
T ss_pred -HHHHHHHhhCHHHHhCC
Confidence 67999999999999987
No 18
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.02 E-value=1.5e-09 Score=112.13 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCC-CcEEEEecCCCcchHHHHHHHHhCCee
Q 005411 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFS-KCRFVLLHASYPFSKEASYLAYVYPQV 288 (698)
Q Consensus 210 ~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P-~~~~vllH~g~p~~~e~~~la~~~pnV 288 (698)
..++..+.+++++|+++|+||++|++.+ +..+.++++ +|| ..++|+ |++......+..++. +|+
T Consensus 104 ~~q~~~~~~~~~~a~e~~~pv~iH~~~~----------~~~~~~l~~--~~~~~~~~i~-H~~~~~~~~~~~~~~--~g~ 168 (251)
T cd01310 104 EVQKEVFRAQLELAKELNLPVVIHSRDA----------HEDVLEILK--EYGPPKRGVF-HCFSGSAEEAKELLD--LGF 168 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCc----------hHHHHHHHH--hcCCCCCEEE-EccCCCHHHHHHHHH--cCC
Confidence 3445667788999999999999999842 445777888 687 555555 653333334444443 899
Q ss_pred eeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 005411 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (698)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~ 368 (698)
|++++.+..... ...++++++.++.+|+||+||++..+...+-+.......+.+++..+.+...++. +.+.+
T Consensus 169 ~~~~~~~~~~~~----~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~----e~~~~ 240 (251)
T cd01310 169 YISISGIVTFKN----ANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISV----EEVAE 240 (251)
T ss_pred EEEeeeeeccCC----CHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCH----HHHHH
Confidence 999998763221 1256777888999999999996443211000000000112222222222234543 66999
Q ss_pred HHHHHHHHHhc
Q 005411 369 IFALNAAQFYK 379 (698)
Q Consensus 369 Il~~NA~rly~ 379 (698)
|+++||+|+|+
T Consensus 241 ~~~~N~~~ll~ 251 (251)
T cd01310 241 VTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
No 19
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.60 E-value=2.5e-07 Score=95.55 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeec
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~ 292 (698)
...+...++.|.++|+||.+|++.. +..+.++++ ++|....++.|+.......+..+.. .|+|+++
T Consensus 107 ~~~~~~~~~~a~~~~~pv~iH~~~~----------~~~~~~~l~--~~~~~~~~i~H~~~~~~~~~~~~~~--~g~~~~~ 172 (252)
T TIGR00010 107 EEVFRAQLQLAEELNLPVIIHARDA----------EEDVLDILR--EEKPKVGGVLHCFTGDAELAKKLLD--LGFYISI 172 (252)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCc----------cHHHHHHHH--hcCCCCCEEEEccCCCHHHHHHHHH--CCCeEee
Confidence 3456667899999999999999742 233456666 4643445555873111122223322 4999999
Q ss_pred ccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhh----hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 005411 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (698)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~----~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~ 368 (698)
+.+..... ...+++++...+.+|+||+||++..+-..+. .....++.+ +.+... ..++. +.+.+
T Consensus 173 ~~~~~~~~----~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~-~~~a~~---~g~~~----~~~~~ 240 (252)
T TIGR00010 173 SGIVTFKN----AKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTV-EAIAEI---KGMDV----EELAQ 240 (252)
T ss_pred ceeEecCC----cHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHH-HHHHHH---hCcCH----HHHHH
Confidence 98643221 1346666777889999999996532200000 001122211 111111 13443 56999
Q ss_pred HHHHHHHHHhcC
Q 005411 369 IFALNAAQFYKI 380 (698)
Q Consensus 369 Il~~NA~rly~l 380 (698)
++++|++|+|+|
T Consensus 241 ~~~~N~~~~~~~ 252 (252)
T TIGR00010 241 ITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHhCc
Confidence 999999999985
No 20
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00056 Score=70.72 Aligned_cols=215 Identities=18% Similarity=0.232 Sum_probs=124.6
Q ss_pred cccHHHHHHHHHHHHHhhccccccee-eeeccccCCCCCCCCCHHHHHHHHHHH-Hhc------CCCCcc--CchhhhhH
Q 005411 145 IWTLDVFIETFLKQLRSAANKIVGLK-SIAAYRSGLEINPHVTKKDAEEGLAED-LRS------GKPVRI--TNKSLIDY 214 (698)
Q Consensus 145 ~~~~~~~~~al~~~l~~~~~~~vgfk-si~~y~~gl~~~~~~~~~ea~~~~~~~-l~~------~~~~~~--~~~~l~d~ 214 (698)
+.+.++ .-++++||-.+.+.---|+ -+.||-+. ..+++|+++++.+. +.+ +....- .-..+.
T Consensus 47 vtt~~~-a~aYr~rIl~a~p~~~~F~PLMtlYLtd-----~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~-- 118 (344)
T COG0418 47 VTTVAD-ALAYRERILKAVPAGHRFTPLMTLYLTD-----STTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIE-- 118 (344)
T ss_pred cccHHH-HHHHHHHHHHhCcCCCCCceeEEEEecC-----CCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHH--
Confidence 344444 4577888876543322344 35677432 24688999988873 221 110110 111232
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCcc----chHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCC-eee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~----~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~p-nVy 289 (698)
.++|++|..++.|+|+.+|--..+...|..-.... .|+.+.+ +||++|||+-|.. +.+++.+..... ||+
T Consensus 119 ~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~--~fP~LKIV~EHiT---T~dav~~v~~~~~nla 193 (344)
T COG0418 119 KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQ--RFPKLKIVLEHIT---TKDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHh--hCCcceEEEEEec---cHHHHHHHHhcCccee
Confidence 35789999999999999998776555553323333 4556666 8999999999994 345556665555 477
Q ss_pred eeccccc--------------Ccc---c---HHHHHHHHHHHHhhCCCCcEEEecCCCCCccch----------hhhHHH
Q 005411 290 LDFGLAI--------------PKL---S---VQGMISSIKELLELAPTKKVMFSTDAYASPETY----------FLGAKR 339 (698)
Q Consensus 290 ~d~s~~~--------------~~~---~---~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~----------~~~~~~ 339 (698)
.-+..-. |.. + +..-+..|+++. ..|-.|+.|||||-++|-.. |.. -.
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa-~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsa-p~ 271 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAA-TSGHPKFFLGTDSAPHARSRKESACGCAGIFSA-PF 271 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHH-hcCCCcEEecCCCCCCccccccccccccccccc-Hh
Confidence 6654311 111 0 011122444443 35567999999997666321 100 11
Q ss_pred HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Q 005411 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLG 383 (698)
Q Consensus 340 ~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~~ 383 (698)
.-..++.++.+. + |.+-.+..+..|..++|+|+..
T Consensus 272 al~~~AevFE~~---n------aL~~LeaF~S~nGp~fY~lp~n 306 (344)
T COG0418 272 ALPLYAEVFEEE---N------ALDNLEAFASDNGPKFYGLPRN 306 (344)
T ss_pred HHHHHHHHHHHh---c------HHHHHHHHHhhcCcceecccCC
Confidence 122334444321 1 3477999999999999999743
No 21
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=76.47 Aligned_cols=186 Identities=21% Similarity=0.250 Sum_probs=116.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcC------CCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCC---CCCC-----C
Q 005411 177 SGLEINPHVTKKDAEEGLAEDLRSG------KPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG---DKDL-----D 242 (698)
Q Consensus 177 ~gl~~~~~~~~~ea~~~~~~~l~~~------~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G---~~~~-----~ 242 (698)
.||...|.-.++-|....+|+...- -++.+..+.|+..-+||+|.+|+++...+.+|.-.- |... .
T Consensus 68 v~lgtlpmn~~e~avee~~rcvk~lg~~g~eigshv~e~~ld~~d~~ply~~~e~l~~~lfvhpwdmhmwdgrl~kywlp 147 (297)
T KOG4245|consen 68 VGLGTLPMNAPELAVEEMERCVKELGFKGFEIGSHVAEKDLDAQDFFPLYAAAEELKCSLFVHPWDMHMWDGRLAKYWLP 147 (297)
T ss_pred cccCccCCcCHHHHHHHHHHHHHHcCCCceeeccccccccCchHHHhHHHHHHHhheeeEEecchhhcccccchHhhhhH
Confidence 5666666545666677777777521 256788899999999999999999999999988541 1100 0
Q ss_pred CCCCCcc---------chHHHHhhcCCCCcEEEEecCC--CcchHHHHH--------H-H---HhCCeeeeecccccCcc
Q 005411 243 LRLSNPL---------HLRAILEDKRFSKCRFVLLHAS--YPFSKEASY--------L-A---YVYPQVYLDFGLAIPKL 299 (698)
Q Consensus 243 ~~~~~p~---------~L~~l~~~~~~P~~~~vllH~g--~p~~~e~~~--------l-a---~~~pnVy~d~s~~~~~~ 299 (698)
.-...|. .+..+++ .||++|+.++|.| +|+.+.... | | ..-||-|.++-|.-...
T Consensus 148 wlvgmpaeta~aics~img~i~~--~fpklklcfahggga~p~~~grishg~n~rpdlca~~~~~~p~k~~g~~~tdalv 225 (297)
T KOG4245|consen 148 WLVGMPAETAIAICSMIMGGIFE--KFPKLKLCFAHGGGAFPFIRGRISHGFNMRPDLCAGDCKMAPKKLDGLFWTDALV 225 (297)
T ss_pred HHhCCchHHHHHHHHHHHhhHHH--hCchheeeeecCCcccceeeeeeccCccCCcchhcCcCCCChhhhccchhhhhhh
Confidence 0112232 3456677 7999999999986 677643111 1 1 11245554443321100
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhc
Q 005411 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (698)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~ 379 (698)
.-...++-+++..|-++|+.||| |+||- +... ..+++.++ .+++ + +.++++.++||..+++
T Consensus 226 ---hdp~alell~~tigkd~iilgtd-ypfpl----gele----~gkliee~---~~f~--a--~~ke~l~~~nal~~l~ 286 (297)
T KOG4245|consen 226 ---HDPKALELLIDTIGKDHIILGTD-YPFPL----GELE----PGKLIEEM---EEFD--A--EDKEDLKAGNALAFLD 286 (297)
T ss_pred ---cCcHHHHHHHHhhccceEEeccC-CCCcC----cccc----cchHHHhh---cccc--h--hhHHHhhhccchhhcc
Confidence 11236777889999999999999 44552 2211 11222222 2233 3 6799999999999999
Q ss_pred CCCC
Q 005411 380 INLG 383 (698)
Q Consensus 380 l~~~ 383 (698)
|+..
T Consensus 287 id~n 290 (297)
T KOG4245|consen 287 IDEN 290 (297)
T ss_pred cchh
Confidence 9753
No 22
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.88 E-value=0.0002 Score=75.90 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCC-CcchHHHHHHHHhCCeeeeeccccc
Q 005411 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFGLAI 296 (698)
Q Consensus 218 ~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g-~p~~~e~~~la~~~pnVy~d~s~~~ 296 (698)
..+++|.++|+||.+|++.+.. +....+. ++++..++..++++.|+. ..-...+..++. . ++|++++...
T Consensus 140 ~~~~lA~~~~~Pv~iH~~~~~~------~~~~~l~-~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~-~-G~~i~~~~~~ 210 (293)
T cd00530 140 AAARAQKETGVPISTHTQAGLT------MGLEQLR-ILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA-L-GAYLEFDGIG 210 (293)
T ss_pred HHHHHHHHHCCeEEEcCCCCcc------ccHHHHH-HHHHcCCChhheEEeCCCCCCCHHHHHHHHh-C-CCEEEeCCCC
Confidence 3478889999999999975410 1111233 333224566679999994 222233334443 2 6887777543
Q ss_pred Cc-----ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc--hhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005411 297 PK-----LSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (698)
Q Consensus 297 ~~-----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~I 369 (698)
.. .+.....+.++++++.++.+|||++||++..+.. .+.+.. ...+-..+....+...++. +.++++
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~----e~i~~~ 284 (293)
T cd00530 211 KDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHG--YDYILTRFIPRLRERGVTE----EQLDTI 284 (293)
T ss_pred cccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCC--hHHHHHHHHHHHHHcCCCH----HHHHHH
Confidence 21 1111234578999999999999999997643210 001110 0011111222222334554 569999
Q ss_pred HHHHHHHHh
Q 005411 370 FALNAAQFY 378 (698)
Q Consensus 370 l~~NA~rly 378 (698)
+.+|++|+|
T Consensus 285 ~~~N~~~lf 293 (293)
T cd00530 285 LVENPARFL 293 (293)
T ss_pred HHHCHHHhC
Confidence 999999987
No 23
>PRK10812 putative DNAse; Provisional
Probab=97.81 E-value=0.00017 Score=75.52 Aligned_cols=141 Identities=20% Similarity=0.264 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~ 295 (698)
|...+++|.++++||.+|+-.+. . .+-+++++...+..++| .|+-..-...+..+.. -+.|+++++.
T Consensus 113 f~~ql~lA~e~~~Pv~iH~r~a~---------~-~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~--~G~~is~~g~ 179 (265)
T PRK10812 113 FRHHIQIGRELNKPVIVHTRDAR---------A-DTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD--LGFYISFSGI 179 (265)
T ss_pred HHHHHHHHHHhCCCeEEEeeCch---------H-HHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH--CCCEEEECee
Confidence 33447889999999999985321 1 22334442122333555 6872111222333332 3789998876
Q ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHH
Q 005411 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (698)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~---~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~ 371 (698)
..+-. .+.+++++..+|.+|+|..||+++. |..+.. ...+...+ .+.+++. ..++. +.+.++++
T Consensus 180 ~t~~~----~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v-~~~ia~l---~g~~~----eei~~~~~ 247 (265)
T PRK10812 180 VTFRN----AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDV-AEYMAVL---KGVSV----EELAQVTT 247 (265)
T ss_pred eecCc----cHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHH-HHHHHHH---hCCCH----HHHHHHHH
Confidence 53211 2367888899999999999998654 211100 01122222 1233332 23554 56889999
Q ss_pred HHHHHHhcCC
Q 005411 372 LNAAQFYKIN 381 (698)
Q Consensus 372 ~NA~rly~l~ 381 (698)
+|++|+|+++
T Consensus 248 ~N~~~lf~~~ 257 (265)
T PRK10812 248 DNFARLFHID 257 (265)
T ss_pred HHHHHHHCCC
Confidence 9999999984
No 24
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.72 E-value=0.0003 Score=73.40 Aligned_cols=138 Identities=19% Similarity=0.260 Sum_probs=78.4
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecC-CCcchHHHHHHHHhCCeeeeeccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFGL 294 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~-g~p~~~e~~~la~~~pnVy~d~s~ 294 (698)
|...+++|.++++||++|+=-. .- .+-.++++-..+ .+. ++|+ +.+ ...+..+.. -+.|+.++.
T Consensus 116 f~~ql~lA~~~~~Pv~iH~r~a---------~~-~~~~il~~~~~~-~~~-i~H~fsG~-~~~a~~~l~--~G~~iS~~g 180 (258)
T PRK11449 116 LDEQLKLAKRYDLPVILHSRRT---------HD-KLAMHLKRHDLP-RTG-VVHGFSGS-LQQAERFVQ--LGYKIGVGG 180 (258)
T ss_pred HHHHHHHHHHhCCCEEEEecCc---------cH-HHHHHHHhcCCC-CCe-EEEcCCCC-HHHHHHHHH--CCCEEEeCc
Confidence 3444789999999999999321 11 233345521112 233 5676 222 223333333 268888888
Q ss_pred ccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhh----HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005411 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (698)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il 370 (698)
++.+-. .+.+++++...|.+|||+.||++..|...+-+ ..+..+++ +.+++. ..++. +.+.++.
T Consensus 181 ~it~~~----~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~-~~ia~l---~~~~~----~el~~~~ 248 (258)
T PRK11449 181 TITYPR----ASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVF-DVLCEL---RPEPA----DEIAEVL 248 (258)
T ss_pred cccccC----cHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHH-HHHHHH---HCcCH----HHHHHHH
Confidence 764321 13578888899999999999976544210100 11222222 112221 23333 4588899
Q ss_pred HHHHHHHhcC
Q 005411 371 ALNAAQFYKI 380 (698)
Q Consensus 371 ~~NA~rly~l 380 (698)
++|+.++|++
T Consensus 249 ~~N~~~lf~~ 258 (258)
T PRK11449 249 LNNTYTLFNV 258 (258)
T ss_pred HHHHHHHhCc
Confidence 9999999985
No 25
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=97.70 E-value=0.00023 Score=75.37 Aligned_cols=129 Identities=22% Similarity=0.241 Sum_probs=87.9
Q ss_pred eeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCch-HHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCc-h
Q 005411 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTV-A 603 (698)
Q Consensus 526 ~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~-~ 603 (698)
.+|+|.||++.++. . ..+. .... .++.++... .+ ..+++|...+|.||+..|.. .
T Consensus 1 t~GvE~E~~lvD~~--t----~~~~-----------~~~~~~~l~~~~~~---~~---~~~~~El~~~qiEi~t~p~~~~ 57 (287)
T TIGR02050 1 TLGVEEELLLVDPH--T----YDLA-----------ASASAVLIGACREK---IG---AGFKHELFESQVELATPVCTTL 57 (287)
T ss_pred CceeeeeeeeEcCC--c----cCcC-----------ccChHHHHHhhhhh---cc---cccChhhhccEEEecCCCcCCH
Confidence 47999999999871 1 1111 1112 444444432 22 34899999999999999965 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCeee---eccccCC-----------------------CCCCcccccccccccCCcccc
Q 005411 604 AKAADNLIFTREVLRAVARKHGLLAT---FVPKFAL-----------------------DDIGSGSHVHLSLWQNGENVF 657 (698)
Q Consensus 604 l~aaD~l~~~r~~ik~vA~~~Gl~AT---FmpKP~~-----------------------~~~GsG~H~H~Sl~~~g~n~f 657 (698)
-++.+.+...+..++++|+++|+... .+|.... ...-+|+|+|+++-+.
T Consensus 58 ~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~----- 132 (287)
T TIGR02050 58 AEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSP----- 132 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCH-----
Confidence 67899999999999999999998654 3333211 1135889999999531
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 658 MASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 658 ~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
+..-..+-.+...+|-+.|+++.++
T Consensus 133 ------------~~~i~~~n~l~~~lP~llALsANSP 157 (287)
T TIGR02050 133 ------------DDAVAVLNRLLPWLPHLLALSASSP 157 (287)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1234455567778888888887664
No 26
>PRK13517 carboxylate-amine ligase; Provisional
Probab=97.69 E-value=0.00025 Score=77.97 Aligned_cols=132 Identities=25% Similarity=0.253 Sum_probs=93.2
Q ss_pred eeeeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCc-
Q 005411 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTV- 602 (698)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~- 602 (698)
.+.+|.|.||+++++. .+ .+ .+..+++++.+.... .-..+..|..-+|.||+.+|..
T Consensus 10 ~~tiGvE~E~~lVD~~--t~----~~---------------~~~~~~vl~~~~~~~-~~~~i~~El~~~qiEi~t~p~~~ 67 (373)
T PRK13517 10 RPTLGVEWELLLVDPE--TG----EL---------------SPRAAEVLAAAGEDD-EGPHLQKELLRNTVEVVTGVCDT 67 (373)
T ss_pred CCeeEeeeeEeeECCC--cC----Cc---------------CccHHHHHHhccccc-CCCcccccccCCEEEECCCCCCC
Confidence 4599999999999861 11 11 122444555444211 1246788999999999999975
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCeee---eccccCCC-----------------------CCCcccccccccccCCccc
Q 005411 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFALD-----------------------DIGSGSHVHLSLWQNGENV 656 (698)
Q Consensus 603 ~l~aaD~l~~~r~~ik~vA~~~Gl~AT---FmpKP~~~-----------------------~~GsG~H~H~Sl~~~g~n~ 656 (698)
.-++.+++...+..++++|+++|+..- .+|..... ..-+|+|+|+++-+.+
T Consensus 68 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~~~--- 144 (373)
T PRK13517 68 VAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPSRE--- 144 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCCHH---
Confidence 667899999999999999999997654 34442111 1368999999994311
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
.+-.++..+...+|-+.|+++.++
T Consensus 145 --------------~~i~~~n~l~~~lP~llALsAnSP 168 (373)
T PRK13517 145 --------------KVVPVINRLRPWLPHLLALSANSP 168 (373)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 245677788889999999998775
No 27
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.53 E-value=0.00032 Score=73.09 Aligned_cols=138 Identities=25% Similarity=0.316 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecC-CCcchHHHHHHHHhCCeeeeec
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDF 292 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~-g~p~~~e~~~la~~~pnVy~d~ 292 (698)
..|...+++|.++++||++|+--. .. .+-+++++-..|+. -++.|+ +.+. .++..+.. .++|+.+
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~a---------~~-~~l~il~~~~~~~~-~~i~H~f~g~~-~~~~~~~~--~g~~~S~ 176 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRKA---------HE-ELLEILKEYGPPNL-RVIFHCFSGSP-EEAKKFLD--LGCYFSF 176 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEESH---------HH-HHHHHHHHTTGGTS-EEEETT--S-H-HHHHHHHH--TTEEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEecCCc---------HH-HHHHHHHhccccce-eEEEecCCCCH-HHHHHHHh--cCceEEe
Confidence 344445788999999999999431 12 23345553223344 556676 2222 22222222 2899999
Q ss_pred ccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-c----c-chhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHH
Q 005411 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-P----E-TYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (698)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P----~-~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~ 366 (698)
+.....-. .+..++++...|.+|||.-||++.. | . ...+. ...+++ +.+++ -..++. +.+
T Consensus 177 ~~~~~~~~----~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~--~i~~~~-~~la~---~~~~~~----e~~ 242 (255)
T PF01026_consen 177 SGAITFKN----SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPS--NIPKVA-QALAE---IKGISL----EEL 242 (255)
T ss_dssp EGGGGSTT----SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GG--GHHHHH-HHHHH---HHTSTH----HHH
T ss_pred cccccccc----cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChH--HHHHHH-HHHHH---HcCCCH----HHH
Confidence 98754321 2347777889999999999997531 1 0 00111 112221 12222 123554 569
Q ss_pred HHHHHHHHHHHhc
Q 005411 367 KDIFALNAAQFYK 379 (698)
Q Consensus 367 ~~Il~~NA~rly~ 379 (698)
..+.++|++|+|+
T Consensus 243 ~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 243 AQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999996
No 28
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.44 E-value=0.00082 Score=73.71 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=88.9
Q ss_pred eeeeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCc-
Q 005411 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTV- 602 (698)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~- 602 (698)
.+.+|+|.||+|.++. .+ .+ .+..+++++.+..-. --+.+.+|..-+|.|++.+|..
T Consensus 11 ~~t~GvE~E~~LVD~~--t~----~~---------------~~~~~~vl~~~~~~~-~~~~v~~El~~~qIEi~T~p~~~ 68 (373)
T PRK13516 11 PFTLGVELELQLVNPH--DY----DL---------------TQDSSDLLRAVKNQP-TAGEIKPEITESMIEIATGVCRD 68 (373)
T ss_pred CCeeEEEEEEEeEcCC--Cc----Cc---------------CccHHHHHHhccccc-cccccChhhhCceEEEcCCCCCC
Confidence 3599999999999871 11 11 122333444443211 1235789999999999999974
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCeee---ecc-----------cc----------CCC--CCCcccccccccccCCccc
Q 005411 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVP-----------KF----------ALD--DIGSGSHVHLSLWQNGENV 656 (698)
Q Consensus 603 ~l~aaD~l~~~r~~ik~vA~~~Gl~AT---Fmp-----------KP----------~~~--~~GsG~H~H~Sl~~~g~n~ 656 (698)
.-++.+++...|..+++.|+++|+... .+| || ... ..-+|+|||+.+-+.
T Consensus 69 ~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d~---- 144 (373)
T PRK13516 69 IDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPSG---- 144 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCCH----
Confidence 566899999999999999999998643 222 11 000 024689999976321
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
+.+-.-+-.+..++|.++|+++.++
T Consensus 145 -------------~~av~~~~~l~~~lP~llALsAsSP 169 (373)
T PRK13516 145 -------------DDALYLLHGLSRYVPHFIALSASSP 169 (373)
T ss_pred -------------HHHHHHHHHHHhHhHHHHHHHhCCc
Confidence 1355666677888899999988775
No 29
>PRK09875 putative hydrolase; Provisional
Probab=97.44 E-value=0.0039 Score=66.12 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=83.7
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcch-HHHHHHHHhCCeeeeecccccCc
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFGLAIPK 298 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~-~e~~~la~~~pnVy~d~s~~~~~ 298 (698)
.+...+.|.||.+|++.+.. -...++ ++++...+--++|+.|+..+.. .....++..=-.|-+|+-..-..
T Consensus 145 a~a~~~TG~pi~~Ht~~~~~-------g~e~l~-il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~ 216 (292)
T PRK09875 145 ALAHNQTGRPISTHTSFSTM-------GLEQLA-LLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSY 216 (292)
T ss_pred HHHHHHHCCcEEEcCCCccc-------hHHHHH-HHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCccc
Confidence 34467899999999987531 112344 5554355556999999964432 22334443322344443222111
Q ss_pred ccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005411 299 LSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (698)
Q Consensus 299 ~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rl 377 (698)
++.....+.++.+++.+=.+|||.|+|...- +-..|.+ .-+..++.+++..+.+.| ++ + +.+++|+.+|++|+
T Consensus 217 ~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg-~G~~~i~~~~ip~L~~~G-vs--e--~~I~~m~~~NP~r~ 290 (292)
T PRK09875 217 YPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGG-YGYDYLLTTFIPQLRQSG-FS--Q--ADVDVMLRENPSQF 290 (292)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCC-CChhHHHHHHHHHHHHcC-CC--H--HHHHHHHHHCHHHH
Confidence 2222334577777777757999999995211 1101111 112234445555555555 44 4 78999999999999
Q ss_pred hc
Q 005411 378 YK 379 (698)
Q Consensus 378 y~ 379 (698)
|.
T Consensus 291 ~~ 292 (292)
T PRK09875 291 FQ 292 (292)
T ss_pred hC
Confidence 84
No 30
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0017 Score=67.28 Aligned_cols=138 Identities=24% Similarity=0.277 Sum_probs=85.7
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHH-HHHHHHhCCeeeeeccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKE-ASYLAYVYPQVYLDFGL 294 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e-~~~la~~~pnVy~d~s~ 294 (698)
|..-+++|.++++||.+|+=-.. ..+-++++ +++...=.++|| |.-..+ +..+. .. ..|+.+|+
T Consensus 114 F~~ql~lA~~~~lPviIH~R~A~----------~d~~~iL~--~~~~~~~gi~Hc-FsGs~e~a~~~~-d~-G~yisisG 178 (256)
T COG0084 114 FEAQLELAKELNLPVIIHTRDAH----------EDTLEILK--EEGAPVGGVLHC-FSGSAEEARKLL-DL-GFYISISG 178 (256)
T ss_pred HHHHHHHHHHcCCCEEEEccccH----------HHHHHHHH--hcCCCCCEEEEc-cCCCHHHHHHHH-Hc-CeEEEECc
Confidence 33347889999999999994321 12445666 454334456687 221122 22222 22 39999999
Q ss_pred ccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhh----HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005411 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (698)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il 370 (698)
+..+-. ..-+++++...|.+|+|.-||++..+-..+-+ ..+.+. ....++++ ..++. +.+..+.
T Consensus 179 ~itfk~----a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~-v~~~iAel---k~~~~----eeva~~t 246 (256)
T COG0084 179 IVTFKN----AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRH-VAEKLAEL---KGISA----EEVAEIT 246 (256)
T ss_pred eeecCC----cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHH-HHHHHHHH---hCCCH----HHHHHHH
Confidence 986531 23688889999999999999987543211212 123333 33455554 24454 5688999
Q ss_pred HHHHHHHhcC
Q 005411 371 ALNAAQFYKI 380 (698)
Q Consensus 371 ~~NA~rly~l 380 (698)
++|+++||++
T Consensus 247 ~~N~~~lf~~ 256 (256)
T COG0084 247 TENAKRLFGL 256 (256)
T ss_pred HHHHHHHhcC
Confidence 9999999985
No 31
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.25 E-value=0.0056 Score=66.43 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCC---CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCC-eee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~~---~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~p-nVy 289 (698)
..++++++.|+++|+||.+|.+...-..+. .......+..+++ +||++++++.|.|. .+...++..++ ||+
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~--~~p~~~v~i~Hvst---~~~~~~i~~ak~~vt 187 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ--RFPKLKIVLEHITT---ADAVEYVKSCNENVA 187 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH--HcCCCeEEEecccH---HHHHHHHHhCCCCcE
Confidence 467888999999999999999864210000 0000124666777 79999999999984 45556666666 899
Q ss_pred eecccccCccc----------------H----HHHHHHHHHHHhhCCCCcEEEecCCCCCccc-----hh-hhHHHHHHH
Q 005411 290 LDFGLAIPKLS----------------V----QGMISSIKELLELAPTKKVMFSTDAYASPET-----YF-LGAKRAREV 343 (698)
Q Consensus 290 ~d~s~~~~~~~----------------~----~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~~-~~~~~~R~~ 343 (698)
.+++...-.++ | ..-+..|-+.+. -|.=.++++||--++... ++ .+.......
T Consensus 188 ~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~-~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~ 266 (335)
T cd01294 188 ATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT-SGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIA 266 (335)
T ss_pred EEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHH-cCCCCeEEECCCCCCCCccccCCCCCccccCHHHH
Confidence 88764321111 1 111122333332 233444679994333110 00 111111112
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+--++ +.+. +.++++ .+-.++..|++|+|||.
T Consensus 267 l~~~~-~~~~-~~l~l~----~~v~~~s~nPA~i~gl~ 298 (335)
T cd01294 267 LPYLA-EVFE-EHNALD----KLEAFASDNGPNFYGLP 298 (335)
T ss_pred HHHHH-HHHh-ccCCHH----HHHHHHHhHHHHHhCCC
Confidence 32233 3344 578874 47788999999999984
No 32
>PLN02611 glutamate--cysteine ligase
Probab=97.19 E-value=0.0014 Score=73.58 Aligned_cols=93 Identities=20% Similarity=0.174 Sum_probs=66.8
Q ss_pred eeecCCCCCceEEecCcCc-hHHHHHHHHHHHHHHHHHHHHcCCeee---eccccCCC----------------------
Q 005411 584 QLHAEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFALD---------------------- 637 (698)
Q Consensus 584 ~~h~E~gpgQ~Ei~l~p~~-~l~aaD~l~~~r~~ik~vA~~~Gl~AT---FmpKP~~~---------------------- 637 (698)
.+-=|-| ||+|++..|.. .-++++.+...+..++++|+++|+... +.|+....
T Consensus 123 ~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~pk~RY~~M~~y~~~~g~ 201 (482)
T PLN02611 123 SVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGS 201 (482)
T ss_pred ceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCCChHHHHHHHHHHHhhh
Confidence 3445766 99999999975 778999999999999999999999532 34442211
Q ss_pred ----C--CCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 638 ----D--IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 638 ----~--~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
. .-+|+|||+.+-+. +.+-.-+--++...|-++|+++.++
T Consensus 202 ~g~~MM~~t~g~QVhvd~~se-----------------ed~v~~~~~~~~l~Pvl~ALfANSP 247 (482)
T PLN02611 202 LGLDMMFRTCTVQVNLDFSSE-----------------QDMVRKFRVGLALQPIATALFANSP 247 (482)
T ss_pred hhhhhccceEEEEEEecCCCH-----------------HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1 35678888877321 1234445567888899999988765
No 33
>PRK13515 carboxylate-amine ligase; Provisional
Probab=97.17 E-value=0.0022 Score=70.55 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=90.1
Q ss_pred eeeeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCc-
Q 005411 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTV- 602 (698)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~- 602 (698)
.+.+|+|.||++.++. ++ .+. +.-++++..+... .-.++.+|..-+|.||+..|..
T Consensus 5 ~~t~GvE~E~~lVD~~--t~----~l~---------------~~~~~~l~~~~~~--~~~~i~~El~~~qiEi~T~p~~~ 61 (371)
T PRK13515 5 EFTLGIEEEYLLVDPE--TR----DLR---------------SYPDALVEACRDT--LGEQVKPEMHQSQVEVGTPVCAT 61 (371)
T ss_pred CCcceEeEeEEEecCC--cc----ccc---------------ccHHHHHHhchhh--cCCccCcchhccEEEECCcccCC
Confidence 4689999999999871 11 110 1113444443332 1237889999999999999975
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCeee---eccccCC-----------------------CCCCcccccccccccCCccc
Q 005411 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFAL-----------------------DDIGSGSHVHLSLWQNGENV 656 (698)
Q Consensus 603 ~l~aaD~l~~~r~~ik~vA~~~Gl~AT---FmpKP~~-----------------------~~~GsG~H~H~Sl~~~g~n~ 656 (698)
.-++.+.+...+..+.++|+++|+... .+|.... ...-+|+|||+++-+.
T Consensus 62 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d~---- 137 (371)
T PRK13515 62 IAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPDR---- 137 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCCH----
Confidence 556789999999999999999999873 3443110 1134699999998431
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
+..-.++..+.-.+|-+.|+++.++
T Consensus 138 -------------e~~~~~~n~~~~~lP~llALsanSP 162 (371)
T PRK13515 138 -------------EDRIDLMNQVRYFLPHLLALSTSSP 162 (371)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1356667788888888888887664
No 34
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.02 E-value=0.0034 Score=68.24 Aligned_cols=130 Identities=23% Similarity=0.235 Sum_probs=87.1
Q ss_pred eeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcC-chH
Q 005411 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VAA 604 (698)
Q Consensus 526 ~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~-~~l 604 (698)
.+|.|.||.|.++. +. +. ....++++..+..... -+.+++|...+|.||+.+++ +.-
T Consensus 14 TlGvEeE~~lvD~~---~~----~~--------------~~~~~~vl~~~~~~~~-~~~~~~El~~~qvEi~T~~~~~~~ 71 (357)
T PRK13518 14 TLGIEEEFFVVDEY---GR----PT--------------SGTDELVYEHEPPEIL-AGRLDHELFKFVIETQTPLIEDPS 71 (357)
T ss_pred ceEEEEEEEEECCC---CC----cc--------------cchhHHHHHhcccccC-CCcccccccCceEEEcCcCcCCHH
Confidence 79999999999871 11 10 1112444444443211 24689999999999999997 677
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCee--------------eeccccCC-------C-----CCCcccccccccccCCccccc
Q 005411 605 KAADNLIFTREVLRAVARKHGLLA--------------TFVPKFAL-------D-----DIGSGSHVHLSLWQNGENVFM 658 (698)
Q Consensus 605 ~aaD~l~~~r~~ik~vA~~~Gl~A--------------TFmpKP~~-------~-----~~GsG~H~H~Sl~~~g~n~f~ 658 (698)
++.+++...|..+..+|+++|+.. ..+|||-. + ..-+|+|||+.+-+.+
T Consensus 72 el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d~d----- 146 (357)
T PRK13518 72 EAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDDAD----- 146 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchhcceeeEEEEEeCCCCHH-----
Confidence 799999999999999999999953 33344411 1 1246899999772211
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 659 ASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 659 ~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
.+-..+-.+.-.+|-++|+++.++
T Consensus 147 ------------~av~v~n~lr~~LP~LlALsAnSP 170 (357)
T PRK13518 147 ------------KAVWIANELRWHLPILLALSANSP 170 (357)
T ss_pred ------------HHHHHHHHHHhHHHHHHHHHcCCc
Confidence 122233455566699999988764
No 35
>PRK10425 DNase TatD; Provisional
Probab=96.96 E-value=0.0063 Score=63.51 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecC-CCcchHHHHHHHHhCCeeeeeccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFGL 294 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~-g~p~~~e~~~la~~~pnVy~d~s~ 294 (698)
|...+++|.++++||.+|+=-. . ..+-++++. ..|+.+=++.|+ +.+ ...+..+.. .+.|+.++.
T Consensus 110 F~~ql~lA~~~~~Pv~iH~r~a---------~-~~~l~iL~~-~~~~~~~~i~H~fsG~-~~~~~~~l~--~G~~~si~g 175 (258)
T PRK10425 110 FVAQLAIAAELNMPVFMHCRDA---------H-ERFMALLEP-WLDKLPGAVLHCFTGT-REEMQACLA--RGLYIGITG 175 (258)
T ss_pred HHHHHHHHHHhCCCeEEEEeCc---------h-HHHHHHHHH-hccCCCCeEEEecCCC-HHHHHHHHH--CCCEEEECc
Confidence 3334788999999999999421 1 123344552 123332134598 111 223333332 389999888
Q ss_pred ccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchh-------hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHH
Q 005411 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYF-------LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (698)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~-------~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~ 366 (698)
.+... +. ...++++++..|.+|+|.-||+++. |..+. ....+...++ ..+++. ..++. +.+
T Consensus 176 ~i~~~-~~--~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~-~~iA~l---~~~~~----~~v 244 (258)
T PRK10425 176 WVCDE-RR--GLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHIL-QRIAHW---RGEDA----AWL 244 (258)
T ss_pred eeecc-cc--cHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHH-HHHHHH---HCcCH----HHH
Confidence 65322 11 1267888899999999999998753 31110 0011222222 222222 23444 558
Q ss_pred HHHHHHHHHHHhcC
Q 005411 367 KDIFALNAAQFYKI 380 (698)
Q Consensus 367 ~~Il~~NA~rly~l 380 (698)
..+.++|+.++|++
T Consensus 245 ~~~~~~N~~~lf~~ 258 (258)
T PRK10425 245 AATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHhCc
Confidence 88999999999985
No 36
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=96.77 E-value=0.015 Score=58.00 Aligned_cols=135 Identities=21% Similarity=0.328 Sum_probs=79.2
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccccCcc
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKL 299 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~~~ 299 (698)
+++|.++++|+.+||-.+.. ....+..|+ ++.+..++.-.+|+-|...-...+ +.. ...|+++.-.....
T Consensus 120 L~LA~e~dvPviVHTPr~nK----~e~t~~ild-i~~~~~l~~~lvvIDH~N~etv~~---vld--~e~~vGlTvqPgKl 189 (254)
T COG1099 120 LELARELDVPVIVHTPRRNK----KEATSKILD-ILIESGLKPSLVVIDHVNEETVDE---VLD--EEFYVGLTVQPGKL 189 (254)
T ss_pred HHHHHHcCCcEEEeCCCCcc----hhHHHHHHH-HHHHcCCChhheehhcccHHHHHH---HHh--ccceEEEEecCCcC
Confidence 67899999999999965421 111222344 444446777888899985433222 221 24566665432233
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhc
Q 005411 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (698)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~ 379 (698)
.+..+..++ ...+.+|||..||.-+-++..+.-. |.++ ++ +...+ ++ +.+++++++||.++|+
T Consensus 190 t~~eAveIV----~ey~~~r~ilnSD~~s~~sd~lavp---rtal-----~m-~~~gv--~~--~~i~kV~~~NA~~~~~ 252 (254)
T COG1099 190 TVEEAVEIV----REYGAERIILNSDAGSAASDPLAVP---RTAL-----EM-EERGV--GE--EEIEKVVRENALSFYG 252 (254)
T ss_pred CHHHHHHHH----HHhCcceEEEecccccccccchhhh---HHHH-----HH-HHhcC--CH--HHHHHHHHHHHHHHhC
Confidence 333333333 3455899999999776665422111 2222 11 11123 33 6799999999999999
Q ss_pred CC
Q 005411 380 IN 381 (698)
Q Consensus 380 l~ 381 (698)
+.
T Consensus 253 l~ 254 (254)
T COG1099 253 LS 254 (254)
T ss_pred cC
Confidence 74
No 37
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=96.51 E-value=0.011 Score=64.81 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=86.3
Q ss_pred eeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCc-hH
Q 005411 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTV-AA 604 (698)
Q Consensus 526 ~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~-~l 604 (698)
..|+|.||.+.++ .+ ...+.-++++..+. .+.+|.-..|.|++.+|.. .-
T Consensus 2 ~~GvEeE~~l~d~---t~-------------------~l~~~a~~vl~~~~-------~~~~El~~~~IE~~T~~~~~~~ 52 (376)
T TIGR02048 2 TKGFEVEIYTGKP---TG-------------------EIVGLSDRIVRDLS-------GFVREPDSRNVEYTTPPLNSYD 52 (376)
T ss_pred CccEEEEEEEECC---Cc-------------------CccccHHHHHHhcc-------CCccchhhcEEEecCCCcCCHH
Confidence 5799999999654 11 11133444554444 3556888999999999964 66
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-e-ee-----eccc-cC---CC---------------CCCcccccccccccCCccccc
Q 005411 605 KAADNLIFTREVLRAVARKHGL-L-AT-----FVPK-FA---LD---------------DIGSGSHVHLSLWQNGENVFM 658 (698)
Q Consensus 605 ~aaD~l~~~r~~ik~vA~~~Gl-~-AT-----FmpK-P~---~~---------------~~GsG~H~H~Sl~~~g~n~f~ 658 (698)
++.+++...|..+..+|.++|. . +. |+.- ++ .+ ..=+|+|||+.+-+.
T Consensus 53 el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~~~~i~G~HVHVgv~d~------ 126 (376)
T TIGR02048 53 RLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGTQVVTASVHINIGIPDP------ 126 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhhhheeeEEEEEcCCCCH------
Confidence 7899999999999999999997 3 11 1111 11 01 124689999988432
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 659 ASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 659 ~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
+.+-..+..|.-++|-|.|+++.++
T Consensus 127 -----------d~av~v~n~lr~~LP~LlALSAsSP 151 (376)
T TIGR02048 127 -----------EELMRACRLVRMEAPLFLALSASSP 151 (376)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2366778899999999999998876
No 38
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.48 E-value=0.016 Score=62.03 Aligned_cols=147 Identities=21% Similarity=0.138 Sum_probs=82.5
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCC-cchHHHHHHHHhCCeeeeecc-----
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY-PFSKEASYLAYVYPQVYLDFG----- 293 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~-p~~~e~~~la~~~pnVy~d~s----- 293 (698)
.....+.|.||.+|++.|. ..++..-+++.+..-+--+||+.|+.. +.......++..=-+|-+|.-
T Consensus 148 a~A~~~TG~pI~~H~~~g~-------~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~ 220 (308)
T PF02126_consen 148 ARAHKETGAPISTHTGRGT-------RMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFS 220 (308)
T ss_dssp HHHHHHHT-EEEEEESTTG-------TCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-T
T ss_pred HHHHHHhCCeEEEcCCCCC-------cCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCccccc
Confidence 4555688999999999762 134433444554466778999999952 222334456654335555554
Q ss_pred cccC----cccHHH-HHHHHHHHHhhCCCCcEEEecCCCC-CccchhhhHHHHH-HHHHHHHHhhhhcCCCChhHHHHHH
Q 005411 294 LAIP----KLSVQG-MISSIKELLELAPTKKVMFSTDAYA-SPETYFLGAKRAR-EVVFSVLRDTCIDEDLSVGEAIEVA 366 (698)
Q Consensus 294 ~~~~----~~~~~g-~~~~l~~~le~~~~~kilfgSD~~~-~P~~~~~~~~~~R-~~l~~vl~~~v~~g~l~~~ea~~~~ 366 (698)
.+.. .+.++. -.+.+.++++.+=.+|||.|.|... .....+.+.-+.. -++.+++..+.+.| ++ + +.+
T Consensus 221 g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~G-v~--~--~~i 295 (308)
T PF02126_consen 221 GKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKERG-VS--E--EDI 295 (308)
T ss_dssp TTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHTT-S---H--HHH
T ss_pred CcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHcC-CC--H--HHH
Confidence 2110 012222 2347888899888899999999654 1221122222211 12344555554544 44 4 678
Q ss_pred HHHHHHHHHHHh
Q 005411 367 KDIFALNAAQFY 378 (698)
Q Consensus 367 ~~Il~~NA~rly 378 (698)
++|+-+|.+|+|
T Consensus 296 ~~ilv~NP~r~l 307 (308)
T PF02126_consen 296 DKILVENPARIL 307 (308)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHCHHHHc
Confidence 999999999997
No 39
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=96.31 E-value=0.022 Score=58.43 Aligned_cols=104 Identities=26% Similarity=0.171 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeec
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~ 292 (698)
+..+..+++.|.++|+||.+|++.+... ...+..+++.... +.++++.|++...... ...+... ++++++
T Consensus 132 ~~~~~~~~~~a~~~~~~i~~H~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~-~~~~~~~-g~~~~~ 201 (275)
T cd01292 132 DESLRRVLEEARKLGLPVVIHAGELPDP-------TRALEDLVALLRL-GGRVVIGHVSHLDPEL-LELLKEA-GVSLEV 201 (275)
T ss_pred cHHHHHHHHHHHHcCCeEEEeeCCcccC-------ccCHHHHHHHHhc-CCCEEEECCccCCHHH-HHHHHHc-CCeEEE
Confidence 4455667888999999999999865311 1123445442122 7899999997653333 3333333 899888
Q ss_pred ccccCccc--HHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 293 GLAIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 293 s~~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
+...+... .......++++++.+ .++++|||+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~ 237 (275)
T cd01292 202 CPLSNYLLGRDGEGAEALRRLLELG--IRVTLGTDGPP 237 (275)
T ss_pred CCcccccccCCcCCcccHHHHHHCC--CcEEEecCCCC
Confidence 76553221 011123466666655 79999999654
No 40
>PRK05451 dihydroorotase; Provisional
Probab=96.29 E-value=0.065 Score=58.47 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCC
Q 005411 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (698)
Q Consensus 212 ~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~p 286 (698)
+|..++++++.|+++|+||.+|.+..+...+. ...+. .+..+++ ++|+++++++|.+.+..-+++ .....
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~-~~~e~~~~~~~l~~lA~--~~pg~~lhI~Hlst~~~~e~i--~~a~~ 190 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI-FDREAVFIDRVLEPLRR--RFPKLKIVFEHITTKDAVDYV--REAND 190 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCccccc-ccchHHHHHHHHHHHHH--hcCCCcEEEEecCcHHHHHHH--HhcCC
Confidence 45678888999999999999999863211111 11122 3466777 799999999999865443332 22256
Q ss_pred eeeeeccccc
Q 005411 287 QVYLDFGLAI 296 (698)
Q Consensus 287 nVy~d~s~~~ 296 (698)
||+++++...
T Consensus 191 ~it~Et~ph~ 200 (345)
T PRK05451 191 NLAATITPHH 200 (345)
T ss_pred CEEEEecHHH
Confidence 9999887654
No 41
>PLN02599 dihydroorotase
Probab=96.09 E-value=0.08 Score=58.05 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccch----HHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCee
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHL----RAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L----~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnV 288 (698)
+..++++++.+++.|+|+.+|....+...+.......++ .+++. ++|++++++.|.+.+..-++..-++. .||
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la--~~~g~kI~i~HiSt~~~ve~v~~ak~-~~v 211 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQ--KLPQLKIVMEHITTMDAVEFVESCGD-GNV 211 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHH--hccCCeEEEEecChHHHHHHHHhccC-CCE
Confidence 467889999999999999999986321111111111223 22344 79999999999975443332222221 178
Q ss_pred eeecccccCcccHH--------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccchhh------hHHHHHH
Q 005411 289 YLDFGLAIPKLSVQ--------------------GMISSIKELLELAPTKKVMFSTDAYASPETYFL------GAKRARE 342 (698)
Q Consensus 289 y~d~s~~~~~~~~~--------------------g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~------~~~~~R~ 342 (698)
+.+++...-.+..+ .-+..|.+.+. -|.-+.++|||.-+++.-... +-...--
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~-~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~~ 290 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAAT-SGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAPV 290 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHH-cCCCCEEEecCCCCCChHHhcCCCCCCCcccHHH
Confidence 88876532111110 11122333222 121245799997555432110 1110000
Q ss_pred HHHHHHHhhhhc-CCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 343 VVFSVLRDTCID-EDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 343 ~l~~vl~~~v~~-g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.+. ++...+.+ | ++ +...+++..|++++|||+
T Consensus 291 ~l~-~l~~~~~~~g--~l----~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 291 ALS-LYAKAFEEAG--AL----DKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HHH-HHHHHHHhcC--CH----HHHHHHHhHHHHHHhCCC
Confidence 122 23333333 4 44 458889999999999994
No 42
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=95.83 E-value=0.0081 Score=63.81 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=66.5
Q ss_pred eeeeecCCCCCceEEecCcCc-hHHHHHHHHHHHHHHHHHHHHcCCeee---ecc-----------cc------------
Q 005411 582 VEQLHAEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLAT---FVP-----------KF------------ 634 (698)
Q Consensus 582 ve~~h~E~gpgQ~Ei~l~p~~-~l~aaD~l~~~r~~ik~vA~~~Gl~AT---Fmp-----------KP------------ 634 (698)
-..+++|...+|.||+..|.. .-++.+.+...+..+.++|+++|+... ++| ||
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 458899999999999999965 666899999999999999999998743 334 21
Q ss_pred --CC-CCCCcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 635 --AL-DDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 635 --~~-~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
+. ...-+|+|+|+++-.. ++..-..+..+...+|.+.|+++.++
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~----------------~e~~v~~~n~~~~~~P~llALsANSP 160 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG----------------DEAAVRVMNALRPWLPVLLALSANSP 160 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS----------------HHHHHHHHHHHHTTHHHHHHHH--B-
T ss_pred hhhhhhhhhcccceEEeCCCc----------------cHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence 00 1123589999999331 11223566777788888899887664
No 43
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=95.67 E-value=0.097 Score=58.75 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=37.7
Q ss_pred eeecCCCCCceEEecCcCc-hHHHHHHHHHHHHHHHHHHHHcCCee
Q 005411 584 QLHAEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLA 628 (698)
Q Consensus 584 ~~h~E~gpgQ~Ei~l~p~~-~l~aaD~l~~~r~~ik~vA~~~Gl~A 628 (698)
.+-=|-| ||+|++..|.. .-++++.+...+..++.+|+++|+..
T Consensus 80 ~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l 124 (446)
T TIGR01436 80 SISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGF 124 (446)
T ss_pred eEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3444666 99999999975 77789999999999999999999864
No 44
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=95.51 E-value=0.2 Score=54.63 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCe
Q 005411 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (698)
Q Consensus 212 ~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pn 287 (698)
++..++++++.|+++|+||.+|.+......+. ..+.|..+..+++ ++|++++++.|.+.+-.-++..-+ ..+
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~--~~~~~~~~i~H~st~~~~~~i~~a--~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQ--RFPALKVVLEHITTKDAIDYVEDG--NNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHH--HccCCeEEEEecCcHHHHHHHHHc--CCC
Confidence 34678889999999999999999864111111 1234445666666 799999999999865443333222 234
Q ss_pred eeeecccc
Q 005411 288 VYLDFGLA 295 (698)
Q Consensus 288 Vy~d~s~~ 295 (698)
|+.+++..
T Consensus 189 vt~E~~ph 196 (341)
T TIGR00856 189 LAATITPQ 196 (341)
T ss_pred EEEEEcHH
Confidence 88777653
No 45
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=95.38 E-value=0.09 Score=53.96 Aligned_cols=133 Identities=24% Similarity=0.313 Sum_probs=77.3
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccccC
Q 005411 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIP 297 (698)
Q Consensus 218 ~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~ 297 (698)
.++++|.+.|.|||+||-..+ ...-..+..++++--....++|--|+ -|....+. | .+ .||
T Consensus 149 ~a~elA~dvdc~vqLHtes~~------~~~~~~i~~~ak~~G~~~~~VVkHha-~p~v~~~~-------~--~G---i~p 209 (285)
T COG1831 149 YAMELAKDVDCAVQLHTESLD------EETYEEIAEMAKEAGIKPYRVVKHHA-PPLVLKCE-------E--VG---IFP 209 (285)
T ss_pred HHHHHhhcCCCcEEEecCCCC------hHHHHHHHHHHHHhCCCcceeEeecC-Cccchhhh-------h--cC---cCC
Confidence 357899999999999996432 01112455666653444678888887 44432211 2 22 222
Q ss_pred cccHHHHHHHHHHHHhhCCCCcEEEecCCCC---CccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q 005411 298 KLSVQGMISSIKELLELAPTKKVMFSTDAYA---SPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNA 374 (698)
Q Consensus 298 ~~~~~g~~~~l~~~le~~~~~kilfgSD~~~---~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA 374 (698)
.. ..-++.++++++.+ .++|+-||.-- -|.-. ++-+ .+-+-..+.+++|.++. +.+.+|+-+|.
T Consensus 210 SV--~asr~~v~~a~~~g--~~FmmETDyIDDp~Rpgav-L~Pk----tVPrr~~~i~~~g~~~e----e~vy~i~~E~p 276 (285)
T COG1831 210 SV--PASRKNVEDAAELG--PRFMMETDYIDDPRRPGAV-LGPK----TVPRRTREILEKGDLTE----EDVYRIHVENP 276 (285)
T ss_pred cc--cccHHHHHHHHhcC--CceEeecccccCcccCCCc-CCcc----chhHHHHHHHHhcCCcH----HHHHHHHHhCH
Confidence 22 12244677777766 69999999321 12111 1111 11112234455666654 67999999999
Q ss_pred HHHhcCCC
Q 005411 375 AQFYKINL 382 (698)
Q Consensus 375 ~rly~l~~ 382 (698)
.++|+++.
T Consensus 277 e~VYg~~~ 284 (285)
T COG1831 277 ERVYGIEL 284 (285)
T ss_pred HHHhCccC
Confidence 99999864
No 46
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=94.28 E-value=0.84 Score=48.65 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=84.2
Q ss_pred HHHHHHhhCCCcEE-EecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCC----cc----h-HHHHHHHHhCCe
Q 005411 218 SSLEVAQFLDLPLQ-IHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY----PF----S-KEASYLAYVYPQ 287 (698)
Q Consensus 218 ~~~e~a~e~glpvq-~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~----p~----~-~e~~~la~~~pn 287 (698)
.+++.|.|+|++|- -|++. .-+.+++. +++.++|.-|+.. +. . +++-.++..=.=
T Consensus 153 ~lV~~~N~LgIiiDlSH~s~------------kt~~Dvl~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 153 ELVREMNELGIIIDLSHLSD------------KTFWDVLD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHhcCCEEEecccCC------------ccHHHHHh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 34788999999884 46653 22555665 7888999989841 11 1 233334432221
Q ss_pred e-------eeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChh
Q 005411 288 V-------YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVG 360 (698)
Q Consensus 288 V-------y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ 360 (698)
| |+.. +--+..+.+.+.+.+..+.+.+|++.|-+|||..+.+.. ..+-+- -..+-+++.++.+.| ++
T Consensus 218 Igv~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~-p~gled-~~~l~~l~~~L~~~G-~~-- 291 (313)
T COG2355 218 IGVNFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGP-PDGLED-VGKLPNLTAALIERG-YS-- 291 (313)
T ss_pred EEEEeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCC-chhhcC-hhHHHHHHHHHHHcC-CC--
Confidence 1 1111 101123456778889999999999999999996554431 001110 112345555666666 54
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 005411 361 EAIEVAKDIFALNAAQFYK 379 (698)
Q Consensus 361 ea~~~~~~Il~~NA~rly~ 379 (698)
+ +.+++|+++|..|+++
T Consensus 292 e--~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 292 E--EEIEKIAGENWLRVLK 308 (313)
T ss_pred H--HHHHHHHHHhHHHHHH
Confidence 3 6799999999999985
No 47
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=93.68 E-value=1.2 Score=48.26 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhC-Ceeeeecc
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFG 293 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~-pnVy~d~s 293 (698)
.+..+++.+.+.|+||.+|.. ....+++ .+++++++.|.+.+-..++...++.. -+|+.+++
T Consensus 116 ~l~~~~~~~~~~g~~v~~H~E--------------r~~~la~---~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ 178 (337)
T cd01302 116 TLMRTFLEIASRGGPVMVHAE--------------RAAQLAE---EAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVC 178 (337)
T ss_pred HHHHHHHHHHhcCCeEEEeHH--------------HHHHHHH---HhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcC
Confidence 445556777888999999997 2344555 47899999999866554544444433 26766665
Q ss_pred cccCcccH------------------HHHHHHHHHHHhhCCCCcEEEecCCCCCccc-------hh---hhHHHHHHHHH
Q 005411 294 LAIPKLSV------------------QGMISSIKELLELAPTKKVMFSTDAYASPET-------YF---LGAKRAREVVF 345 (698)
Q Consensus 294 ~~~~~~~~------------------~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-------~~---~~~~~~R~~l~ 345 (698)
...-.++. ...+..|.+.+..+-.+ +.+||.-++... +| .+.--....+.
T Consensus 179 ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id--~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~ 256 (337)
T cd01302 179 PHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLP 256 (337)
T ss_pred hhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCC--EEecCCCCCCHHHhccCCCcccCCCCcccHHHHHH
Confidence 43211110 11223444444433333 689996544310 00 01001111233
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 346 ~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.++...++ +.+++. .+-+++..|++++|++.
T Consensus 257 ~~~~~~~~-~~i~~~----~~~~~~s~~pA~~~gl~ 287 (337)
T cd01302 257 ILLTEGVK-RGLSLE----TLVEILSENPARIFGLY 287 (337)
T ss_pred HHHHHHHh-cCCCHH----HHHHHHHHHHHHHcCCC
Confidence 33334443 457754 36677889999999984
No 48
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.094 Score=55.75 Aligned_cols=91 Identities=24% Similarity=0.252 Sum_probs=64.0
Q ss_pred cCCCCCceEEecCcCchH-HHHHHHHHHHHHHHHHHHHcCCeee--------------ecccc-C----------CC-CC
Q 005411 587 AEAGKGQFEIALGHTVAA-KAADNLIFTREVLRAVARKHGLLAT--------------FVPKF-A----------LD-DI 639 (698)
Q Consensus 587 ~E~gpgQ~Ei~l~p~~~l-~aaD~l~~~r~~ik~vA~~~Gl~AT--------------FmpKP-~----------~~-~~ 639 (698)
+|.=-.+-|+..+.+..+ +|+-.+--.|..+++.|..|||+.. --+|| + .. ..
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 555556777777776654 4777788899999999999999852 12233 0 00 01
Q ss_pred CcccccccccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhhhhhcCCC
Q 005411 640 GSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (698)
Q Consensus 640 GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (698)
=-|.|||+.+-+ ++..-+.+-+|+.++|-++|+.+.++
T Consensus 123 v~G~HVHVGi~~-----------------~d~~~~~l~~l~~~~PhlLALSASSP 160 (369)
T COG2170 123 VAGQHVHVGIPS-----------------PDDAMYLLHRLLRYVPHLLALSASSP 160 (369)
T ss_pred eeeEEEEecCCC-----------------HHHHHHHHHHHHhhhhHHHhhhcCCc
Confidence 246788877733 22467888899999999999999875
No 49
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=93.32 E-value=1.3 Score=49.52 Aligned_cols=150 Identities=16% Similarity=-0.031 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcch---------HHHHH
Q 005411 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASY 280 (698)
Q Consensus 210 ~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~---------~e~~~ 280 (698)
...+..+..+++.+.++|.++++|.-... .+.-..+..+++-.+..+.++.+.|.+.... .+...
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~ 268 (415)
T cd01297 195 YAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIE 268 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHH
Confidence 45666777788999999999999995432 1111123333332123478999999864332 12222
Q ss_pred HHHh-CCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcC-CCC
Q 005411 281 LAYV-YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE-DLS 358 (698)
Q Consensus 281 la~~-~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g-~l~ 358 (698)
-++. -.+|+.++....... ...++++++. ...+.+||..+++.. +.... ..+..++..++.++ .++
T Consensus 269 ~a~~~G~~v~~e~~p~~~~~-----~~~~~~l~~~---~~~~i~SDh~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~ 336 (415)
T cd01297 269 AARAEGLQVTADVYPYGAGS-----EDDVRRIMAH---PVVMGGSDGGALGKP-HPRSY---GDFTRVLGHYVRERKLLS 336 (415)
T ss_pred HHHHhCCcEEEEeCCCCCCc-----HHHHHHHHcC---CCceeeeCCCcCCCC-Ccchh---CCHHHHHHHHhcccCCCC
Confidence 2222 248988877633211 2345555554 466799996553310 11110 11444555555443 477
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC
Q 005411 359 VGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 359 ~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+.+ +-+.+..|++++|++.
T Consensus 337 ~~~----~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 337 LEE----AVRKMTGLPARVFGLA 355 (415)
T ss_pred HHH----HHHHHHHHHHHHhCCC
Confidence 653 4555667888999985
No 50
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=93.26 E-value=0.52 Score=49.74 Aligned_cols=90 Identities=28% Similarity=0.366 Sum_probs=57.6
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcE-EEEecCCCcchHHHHHHHHhCCeeeeecccccCc
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR-FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPK 298 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~-~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~~ 298 (698)
+++|.+..+|+.+|.=.. .- .+-++++. ..|... =+.+|+=.....++..++... +|+++++++..
T Consensus 141 l~LA~~~~~Pl~iH~r~a---------~~-d~~eIl~~-~~~~~~~~vvvHsFtGs~e~~~~~lk~~--~yig~~g~~~k 207 (296)
T KOG3020|consen 141 LDLAKRLKLPLFIHCRSA---------HE-DLLEILKR-FLPECHKKVVVHSFTGSAEEAQKLLKLG--LYIGFTGCSLK 207 (296)
T ss_pred HHHHHHccCCeeeechhh---------hH-HHHHHHHH-hccccCCceEEEeccCCHHHHHHHHHcc--EEecccceeee
Confidence 677888999999999431 11 12233331 123333 466787333445666677555 99999999864
Q ss_pred ccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 299 LSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 299 ~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
.. .-.+++...|.+|+|--||+++
T Consensus 208 ~~------e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 208 TE------ENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred ch------hhHHHHhhCCHhHeeeccCCcc
Confidence 41 2234455899999999999764
No 51
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.3 Score=49.29 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=64.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCC--CCCCCccchHH---HHhhcCCCCcEEEEecCCCcchHHHHHHHHh------
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRA---ILEDKRFSKCRFVLLHASYPFSKEASYLAYV------ 284 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~--~~~~~p~~L~~---l~~~~~~P~~~~vllH~g~p~~~e~~~la~~------ 284 (698)
++|+++..+|.++|+.+|--. ++..| ...+.+.+|.. +.. |||++|||+-||-.-..-++..-|..
T Consensus 119 fyPvf~aMqe~nm~LnvHGEv-pps~D~~Vf~aE~~Flptll~Lhq--rfP~LKivlEHcTt~dAv~~ve~a~~~sVaaT 195 (344)
T KOG2902|consen 119 FYPVFEAMQEQNMPLNVHGEV-PPSIDGHVFDAEKIFLPTLLQLHQ--RFPQLKIVLEHCTTMDAVNFVESAKEGSVAAT 195 (344)
T ss_pred hhHHHHHHHHcCceEEecCCC-CCccCCceecchhhhHHHHHHHHH--hCccceeHHHhcccHHHHHHHHhhcCCceeeE
Confidence 589999999999999999866 33333 22344444433 555 89999999999942111111111100
Q ss_pred --CCeeeeecccccCc----ccH----HHHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005411 285 --YPQVYLDFGLAIPK----LSV----QGMISSIKELLELAPTKKVMFSTDAYASPE 331 (698)
Q Consensus 285 --~pnVy~d~s~~~~~----~~~----~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (698)
-.++|+..--|... .-+ +--++.|-++. ..+--|+.|||||-++|.
T Consensus 196 vTahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~AlvkAa-tSg~pkFFfGsDSAPHpr 251 (344)
T KOG2902|consen 196 VTAHHLLLTRNDWQGQPHNFCKPVAKREIDREALVKAA-TSGSPKFFFGSDSAPHPR 251 (344)
T ss_pred eehheeEEehhhhcCCCcccccccccCcccHHHHHHHH-hcCCCceeecCCCCCCcc
Confidence 02566655555321 100 01122222221 345678999999988775
No 52
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=92.87 E-value=1.8 Score=48.75 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=63.8
Q ss_pred CCCCcEEEEecCCCcchHHHHHHHHhC-CeeeeecccccCcccHHHH---------------------HHHHHHHHhhCC
Q 005411 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQGM---------------------ISSIKELLELAP 316 (698)
Q Consensus 259 ~~P~~~~vllH~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~g~---------------------~~~l~~~le~~~ 316 (698)
++.+.++++.|.+.+...+....++.. .+|.++++......+...+ +..+.++++.+.
T Consensus 227 ~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~ 306 (447)
T cd01314 227 ELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGT 306 (447)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCC
Confidence 467899999999876544444444433 3566666554321111111 123334444221
Q ss_pred CCcEEEecCCCCCccchhhhHHHH---------------HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 317 TKKVMFSTDAYASPETYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 317 ~~kilfgSD~~~~P~~~~~~~~~~---------------R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
....|||..++.. ..+.+ .-.+.-++.+.+..+.++..+ +-+++..|++++|+|.
T Consensus 307 --i~~igsDh~~~~~----~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~----~~~~~t~~pA~~~gl~ 376 (447)
T cd01314 307 --LQTVGSDHCPFNF----AQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEK----FVELTSTNPAKIFGLY 376 (447)
T ss_pred --eeEEECCCCCCCH----HHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHH----HHHHHhhHHHHHhCCC
Confidence 2348999654321 11211 122444566667777888754 6677889999999985
Q ss_pred CC
Q 005411 382 LG 383 (698)
Q Consensus 382 ~~ 383 (698)
..
T Consensus 377 ~~ 378 (447)
T cd01314 377 PR 378 (447)
T ss_pred CC
Confidence 43
No 53
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=92.01 E-value=1.3 Score=49.21 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCc--EEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCc--chHHHHHHHHhCCeeeeecccccCcccH-
Q 005411 227 DLP--LQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPKLSV- 301 (698)
Q Consensus 227 glp--vq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p--~~~e~~~la~~~pnVy~d~s~~~~~~~~- 301 (698)
|+| |.+|+|.++..+ ..|.++++.+..|--.|.--|..-. -..+....+++ ..++|+..-+.....
T Consensus 188 ~~~g~~~vH~g~~~~~l-------~~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~~--gg~iDv~~~~~~~~l~ 258 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRAL-------QPIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAKK--GGTIDLTSSIDPQFRK 258 (389)
T ss_pred CCCcEEEEEeCCchhhH-------HHHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHHh--CCcEEEeCCCCccchh
Confidence 488 999999764321 1344556544555555555565321 11233333333 567777643221100
Q ss_pred ---HHHHHHHHHHHhhC-CCCcEEEecCCCC-CccchhhhH------HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005411 302 ---QGMISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (698)
Q Consensus 302 ---~g~~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~------~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il 370 (698)
....+.++.+++.+ +.+|+.+|||+.. .|....-+. -.+ ..+...+..++..+.++..+ +=+..
T Consensus 259 ~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~-~sl~~~~~~lv~~g~ls~~e----al~~~ 333 (389)
T TIGR01975 259 EGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSF-ETLFEEVREAVKDGDVPLEK----ALRVI 333 (389)
T ss_pred ccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcH-HHHHHHHHHHHHhCCCCHHH----HHHHH
Confidence 01123667777765 5789999999753 343100000 000 01223445566667788754 45566
Q ss_pred HHHHHHHhcCC
Q 005411 371 ALNAAQFYKIN 381 (698)
Q Consensus 371 ~~NA~rly~l~ 381 (698)
-.|++++++++
T Consensus 334 T~npA~~Lgl~ 344 (389)
T TIGR01975 334 TSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHhCCC
Confidence 78999999986
No 54
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=91.61 E-value=0.9 Score=49.00 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCc---cchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHH
Q 005411 300 SVQGMISSIKELLELAPTKKVMFSTDAYASP---ETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (698)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P---~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (698)
+.+.+.+.+..+.+++|.+.|-+|||.-..+ .. +.....+ -++..++.+.| ++. +.+++|+++|+.|
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~g-l~~~~~~----~~l~~~L~~rG-~s~----~~i~kI~g~N~lR 316 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEG-LEDPSDL----PNLTEELLKRG-YSE----EDIEKILGGNFLR 316 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBT-BSSGGGH----HHHHHHHHHTT-S-H----HHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCc-cCCHHHH----HHHHHHHHHCC-CCH----HHHHHHHhHhHHH
Confidence 3556777888999999999999999943322 11 1111222 23334444444 443 6799999999999
Q ss_pred Hhc
Q 005411 377 FYK 379 (698)
Q Consensus 377 ly~ 379 (698)
+++
T Consensus 317 v~~ 319 (320)
T PF01244_consen 317 VLR 319 (320)
T ss_dssp HHH
T ss_pred Hhc
Confidence 984
No 55
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=90.06 E-value=4.1 Score=43.74 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccch--hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005411 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETY--FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (698)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~--~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rl 377 (698)
+.+.+.+.+..+.+++|.+.|-+|||.-..+... +-.... +-++..++++.| ++. +.+++|+++|+.|+
T Consensus 239 ~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~----~~~l~~~L~~rG-~s~----~~i~~i~g~N~lRv 309 (309)
T cd01301 239 TLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSD----LPNLTAELLERG-YSE----EEIEKIAGGNFLRV 309 (309)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHH----HHHHHHHHHHcC-CCH----HHHHHHHhhchhcC
Confidence 3456777899999999999999999954332210 111222 334444555544 443 56999999999874
No 56
>PRK09357 pyrC dihydroorotase; Validated
Probab=89.52 E-value=3.6 Score=45.96 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--C-------CCCC---CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHH
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGD--K-------DLDL---RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~--~-------~~~~---~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e 277 (698)
.+..+++.|+++|+|+.+|..-.. . +... ....|. .+..++.--+.-++++.+.|.+.+...+
T Consensus 160 ~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~ 239 (423)
T PRK09357 160 LMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVE 239 (423)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 345567889999999999997521 0 0000 011122 1222221112336999999998766555
Q ss_pred HHHHHHhC-CeeeeecccccCcc---------------c----HHHHHHHHHHHHhhCCCCcEEEecCCCCCccc-----
Q 005411 278 ASYLAYVY-PQVYLDFGLAIPKL---------------S----VQGMISSIKELLELAPTKKVMFSTDAYASPET----- 332 (698)
Q Consensus 278 ~~~la~~~-pnVy~d~s~~~~~~---------------~----~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~----- 332 (698)
+...++.. -+|+.+++..+-.. + +.+ +..|.++++.+ ....+|||..++...
T Consensus 240 ~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~l~~~l~~G--~~~~i~sDh~p~~~~~k~~~ 316 (423)
T PRK09357 240 LIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEED-REALIEGLKDG--TIDAIATDHAPHAREEKECE 316 (423)
T ss_pred HHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHH-HHHHHHHHHcC--CCeEEecCCCCCChHHccCC
Confidence 55555543 36776665522111 0 111 23455555533 233699996543321
Q ss_pred hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005411 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 333 ~~---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (698)
+| .+---+...+..++...+.++.+++++ +-+++..|++++++++.
T Consensus 317 ~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~----~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 317 FEAAPFGITGLETALSLLYTTLVKTGLLDLEQ----LLEKMTINPARILGLPA 365 (423)
T ss_pred HhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCCC
Confidence 00 000001222334455566677788754 56667799999999853
No 57
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=87.66 E-value=4.1 Score=43.02 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=76.1
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCC---CcchHHHHHHHHhCCeeeeeccccc
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS---YPFSKEASYLAYVYPQVYLDFGLAI 296 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g---~p~~~e~~~la~~~pnVy~d~s~~~ 296 (698)
.+...+.|.|+..||-.|-. -...++-|.+. .-+=-++++.|++ .|+... -.|+..=--+-+|.=+..
T Consensus 158 A~A~~~Tg~Pi~tHt~~gt~-------g~eq~~il~~e-gvdl~~v~igH~d~n~dd~~y~-~~l~~~Ga~l~fD~iG~d 228 (316)
T COG1735 158 ARAHKETGAPISTHTPAGTM-------GLEQLRILAEE-GVDLRKVSIGHMDPNTDDVYYQ-KKLADRGAFLEFDRIGKD 228 (316)
T ss_pred HHHhhhcCCCeEEeccchhh-------hHHHHHHHHHc-CCChhHeeEeccCCCCChHHHH-HHHHhcCceEEecccCcc
Confidence 45556889999999976621 12234444444 4555689999995 222111 122221112444443333
Q ss_pred CcccHHHHHHHHHHHHhhCCCCcEEEe-cCCCC---Ccc-chhhhHHH--HHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005411 297 PKLSVQGMISSIKELLELAPTKKVMFS-TDAYA---SPE-TYFLGAKR--AREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (698)
Q Consensus 297 ~~~~~~g~~~~l~~~le~~~~~kilfg-SD~~~---~P~-~~~~~~~~--~R~~l~~vl~~~v~~g~l~~~ea~~~~~~I 369 (698)
.+.+...-...+.++++.+-.++|+.| .|... .+. ..+.+... .--++.+++.++-+.| + +| +.++++
T Consensus 229 ~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~~~~~~~~g~~~I~~~fIP~Lk~~G-v--de--~~i~~m 303 (316)
T COG1735 229 KYYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVFLKSMLKANGGWGYGYILNDFIPRLKRHG-V--DE--ETIDTM 303 (316)
T ss_pred ccCcHHHhhhhHHHHHHhhHhhheecccchhhhhhhHHHHhhhhhcCCcccchhhHhhHHHHHHcC-C--CH--HHHHHH
Confidence 222222223456667777777888888 22100 111 01111110 0112334444444444 3 34 789999
Q ss_pred HHHHHHHHhcCC
Q 005411 370 FALNAAQFYKIN 381 (698)
Q Consensus 370 l~~NA~rly~l~ 381 (698)
|-+|.+|+|...
T Consensus 304 lvdNP~r~f~~~ 315 (316)
T COG1735 304 LVDNPARLFTAK 315 (316)
T ss_pred HhhCHHHHhccC
Confidence 999999999753
No 58
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=87.55 E-value=7.6 Score=42.03 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=66.3
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcc----hH------HHHHHHHhCCe
Q 005411 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF----SK------EASYLAYVYPQ 287 (698)
Q Consensus 218 ~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~----~~------e~~~la~~~pn 287 (698)
...+++.++|+|+.+|++.+.. ....+..+++ ++ .++.|+-... .+ +.. ....-.+
T Consensus 153 ~~~~~a~~~~~pi~vH~~~~~~-------~~~~~~~~l~----~g--~~~~H~~~g~~~~~~~~~~~~~~~~-~~~~~~G 218 (338)
T cd01307 153 LAKKIAKEADLPLMVHIGSPPP-------ILDEVVPLLR----RG--DVLTHCFNGKPNGIVDEEGEVLPLV-RRARERG 218 (338)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-------CHHHHHHHhc----CC--CEEEeccCCCCCCCCCCCCcHHHHH-HHHHhCC
Confidence 3467788999999999986532 1222333333 12 3566762211 11 111 1112348
Q ss_pred eeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc-hhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHH
Q 005411 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET-YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (698)
Q Consensus 288 Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~ 366 (698)
+|+|++.-....+ .+..+++++.+.... +.+||... ... ..+.. .+..++..+. ...++. +.+
T Consensus 219 ~~~d~~~G~~~~~----~~~~~~l~~~G~~~~-~lstD~~~-~~~~~~p~~-----~l~~~l~~l~-~~gi~~----ee~ 282 (338)
T cd01307 219 VIFDVGHGTASFS----FRVARAAIAAGLLPD-TISSDIHG-RNRTNGPVY-----ALATTLSKLL-ALGMPL----EEV 282 (338)
T ss_pred EEEEeCCCCCchh----HHHHHHHHHCCCCCe-eecCCccc-cCCCCCccc-----cHHHHHHHHH-HcCCCH----HHH
Confidence 9999773211111 123344555433233 36999632 100 00111 0112222221 224554 568
Q ss_pred HHHHHHHHHHHhcCC
Q 005411 367 KDIFALNAAQFYKIN 381 (698)
Q Consensus 367 ~~Il~~NA~rly~l~ 381 (698)
.++...|++++|+++
T Consensus 283 ~~~~T~NpA~~lgl~ 297 (338)
T cd01307 283 IEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHcCCC
Confidence 899999999999984
No 59
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=87.30 E-value=6 Score=43.31 Aligned_cols=141 Identities=20% Similarity=0.142 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeee
Q 005411 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (698)
Q Consensus 212 ~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d 291 (698)
.|..+..+++.+... +||.+|+...+ +...+-.+++ +| ++++++.|+..- ...+..|+. .|+++.
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~~--------~i~~~l~~~~--e~-g~~~~i~H~~~~-~~~~~~la~--~gv~v~ 242 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRAD--------DILTAIRIAK--EF-GIKITIEHGAEG-YKLADELAK--HGIPVI 242 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCHH--------HHHHHHHHHH--Hc-CCCEEEECchhH-HHHHHHHHH--cCCCEE
Confidence 445566667666644 99999986311 1223344555 45 678999999654 334444443 366665
Q ss_pred cccccCcccH-HH---HHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 005411 292 FGLAIPKLSV-QG---MISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (698)
Q Consensus 292 ~s~~~~~~~~-~g---~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~ 367 (698)
++..++.... +. ....+.++.+.++ =++.++||...+|. ..+...+ ...+.. .++. +.+-
T Consensus 243 ~~P~~~~~~~~~~~~~~~~~~~~l~~aGG-v~valgsD~~~~~~------~~l~~~~----~~a~~~-gl~~----~~al 306 (359)
T cd01309 243 YGPTLTLPKKVEEVNDAIDTNAYLLKKGG-VAFAISSDHPVLNI------RNLNLEA----AKAVKY-GLSY----EEAL 306 (359)
T ss_pred ECccccccccHHHhhcchhhHHHHHHcCC-ceEEEECCCCCccc------hhHHHHH----HHHHHc-CCCH----HHHH
Confidence 4433221111 01 1123445555443 46889999543332 1111111 112222 3554 3355
Q ss_pred HHHHHHHHHHhcCCCC
Q 005411 368 DIFALNAAQFYKINLG 383 (698)
Q Consensus 368 ~Il~~NA~rly~l~~~ 383 (698)
+.+-.|++++++++..
T Consensus 307 ~~~T~n~A~~lg~~~~ 322 (359)
T cd01309 307 KAITINPAKILGIEDR 322 (359)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 5667999999998654
No 60
>PLN02795 allantoinase
Probab=87.22 E-value=13 Score=42.92 Aligned_cols=157 Identities=17% Similarity=0.066 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCC---------CC-C---CCCCCcc-----c---hHHHHhh----cCCCCcEEEEe
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDK---------DL-D---LRLSNPL-----H---LRAILED----KRFSKCRFVLL 268 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~---------~~-~---~~~~~p~-----~---L~~l~~~----~~~P~~~~vll 268 (698)
..+..+++.++++|+||.+|.-..+- +. + ...+.|. . +-.+++. ++-|+.++.+.
T Consensus 212 ~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~ 291 (505)
T PLN02795 212 THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIV 291 (505)
T ss_pred HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEE
Confidence 44566678889999999999965320 00 0 0112232 1 2233331 24479999999
Q ss_pred cCCCc-chHHHHHHHHhCC-eeeeecccccCccc--------------H----HHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 269 HASYP-FSKEASYLAYVYP-QVYLDFGLAIPKLS--------------V----QGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 269 H~g~p-~~~e~~~la~~~p-nVy~d~s~~~~~~~--------------~----~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
|.+.+ ...+++..++.-. +|+++++...-.++ | ..-+..|-+.+.-+-++ +.+||--+
T Consensus 292 HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id--~i~sDHap 369 (505)
T PLN02795 292 HLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDID--MLSSDHSP 369 (505)
T ss_pred ECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCce--EEecCCCC
Confidence 99876 5555555554443 68888765321110 0 11233455555545455 58999654
Q ss_pred CccchhhhHHH-----HH----------HHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 329 SPETYFLGAKR-----AR----------EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 329 ~P~~~~~~~~~-----~R----------~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+.. ..+. |. ..+--++...++ +.+++.+ +-+++..|++++|+++
T Consensus 370 ~~~----~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~-~~l~l~~----~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 370 SPP----DLKLLEEGNFLRAWGGISSLQFVLPATWTAGRA-YGLTLEQ----LARWWSERPAKLAGLD 428 (505)
T ss_pred CCh----HHhccCcCCHhhCCCCceeHHHHHHHHHHHHHH-cCCCHHH----HHHHHHHHHHHHhCCC
Confidence 431 1111 11 223334444454 4477754 6778889999999993
No 61
>PLN02942 dihydropyrimidinase
Probab=86.93 E-value=13 Score=42.45 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--------------CCCC-CCCCCccc-----hHHHHhhcCCCCcEEEEecCCCcc
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGD--------------KDLD-LRLSNPLH-----LRAILEDKRFSKCRFVLLHASYPF 274 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~--------------~~~~-~~~~~p~~-----L~~l~~~~~~P~~~~vllH~g~p~ 274 (698)
.+..+++.++++|+++.+|.-..+ .+.. ...+.|.. +..++.--++-+.++++.|++..-
T Consensus 168 ~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~ 247 (486)
T PLN02942 168 LLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSID 247 (486)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 344556778888999999953210 0100 01123421 222221112457899999998766
Q ss_pred hHHHHHHHHhC-Ceeeeeccccc----------------------CcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005411 275 SKEASYLAYVY-PQVYLDFGLAI----------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPE 331 (698)
Q Consensus 275 ~~e~~~la~~~-pnVy~d~s~~~----------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (698)
.-+....++.. -+|..+++... |-+-....+..|.+.++.+ -...+|||.-++..
T Consensus 248 ~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G--~i~~igTDh~p~~~ 325 (486)
T PLN02942 248 AMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSG--ILQLVGTDHCPFNS 325 (486)
T ss_pred HHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCC--ceEEEECCCCCCCh
Confidence 53444444443 36666665311 1110112233444444432 35669999544331
Q ss_pred ch--------h---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005411 332 TY--------F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 332 ~~--------~---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (698)
.. + .+.-.....+..++...+..+.++..+ +-+++..|.++++++..
T Consensus 326 ~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~----~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 326 TQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTD----YVRVTSTECAKIFNIYP 383 (486)
T ss_pred HHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCCC
Confidence 10 0 000000111333444556667788754 66677889999999853
No 62
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=85.10 E-value=4.4 Score=44.61 Aligned_cols=41 Identities=32% Similarity=0.341 Sum_probs=35.5
Q ss_pred cCCCCCceEEecCcC-chHHHHHHHHHHHHHHHHHHHHcCCee
Q 005411 587 AEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (698)
Q Consensus 587 ~E~gpgQ~Ei~l~p~-~~l~aaD~l~~~r~~ik~vA~~~Gl~A 628 (698)
=|=| ||+|++..|. +.-++++.+...+..++++|+++|+..
T Consensus 66 lEPG-gQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~l 107 (390)
T TIGR03444 66 VEPG-GQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLAL 107 (390)
T ss_pred eCCC-CEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 3533 9999999997 567789999999999999999999953
No 63
>PTZ00124 adenosine deaminase; Provisional
Probab=83.84 E-value=4.8 Score=44.18 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHhhcc---cccceeeeeccccCCCCCCCCCHHHHHHHHHHHHhcC---CCCccCchhhhhHHHHHHH
Q 005411 147 TLDVFIETFLKQLRSAAN---KIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG---KPVRITNKSLIDYIFISSL 220 (698)
Q Consensus 147 ~~~~~~~al~~~l~~~~~---~~vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~~~---~~~~~~~~~l~d~~~~~~~ 220 (698)
+++++++++.+.++.+.. .-+..+-|.|-.+.. +.+.+.+.++-+.+-. -+..+...+.....+.+++
T Consensus 139 ~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~------~~e~a~e~~~~a~~~~~~vvGiDLaG~E~~~~~f~~~f 212 (362)
T PTZ00124 139 DIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGH------DAAPIKESADFCLKHKADFVGFDHAGHEVDLKPFKDIF 212 (362)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCC------CHHHHHHHHHHHHhccCCeEEEeccCCCCCcHHHHHHH
Confidence 467788888877766532 223556666654433 2344444444433311 1111211111123467889
Q ss_pred HHHhhCCCcEEEecCC
Q 005411 221 EVAQFLDLPLQIHTGF 236 (698)
Q Consensus 221 e~a~e~glpvq~H~G~ 236 (698)
+.|.+.|+++.+|.|-
T Consensus 213 ~~Ar~~Gl~~t~HaGE 228 (362)
T PTZ00124 213 DYVREAGVNLTVHAGE 228 (362)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 9999999999999996
No 64
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=83.75 E-value=17 Score=40.49 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC-----------CCCC-CCCCCcc-----chHHHHhhcCCCCcEEEEecCCCcch
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLD-LRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~-----------~~~~-~~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~ 275 (698)
+..+..+++.|+++|+|+.+|.-... .+.. ...+.|. .+..++.--+.-++++++.|.+.+..
T Consensus 146 ~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~ 225 (411)
T TIGR00857 146 ILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKES 225 (411)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHH
Confidence 34556667888899999999974321 1111 0122333 22222221134589999999987655
Q ss_pred HHHHHHHHhCC-eeeeecccccCcccH----------------HH--HHHHHHHHHhhCCCCcEEEecCCCCCccch---
Q 005411 276 KEASYLAYVYP-QVYLDFGLAIPKLSV----------------QG--MISSIKELLELAPTKKVMFSTDAYASPETY--- 333 (698)
Q Consensus 276 ~e~~~la~~~p-nVy~d~s~~~~~~~~----------------~g--~~~~l~~~le~~~~~kilfgSD~~~~P~~~--- 333 (698)
-++...++... +|+++++...-.++. .. -+..|-+.+..+-.+ +.+||-.++....
T Consensus 226 l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~--~i~sDh~p~~~~~k~~ 303 (411)
T TIGR00857 226 LELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIID--IIATDHAPHTLEEKTK 303 (411)
T ss_pred HHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCc--EEEcCCCCCChHHccC
Confidence 55555554432 688887663311111 01 112344444433333 5899955442100
Q ss_pred -----hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 334 -----FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 334 -----~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+.+.......+..++ ..+.++.++..+ +-+.+..|++++++++
T Consensus 304 ~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~~~~----~~~~~t~~pa~~~g~~ 351 (411)
T TIGR00857 304 EFAAAPPGIPGLETALPLLL-QLLVKGLISLKD----LIRMLSINPARIFGLP 351 (411)
T ss_pred CHhhCCCCceeHHHHHHHHH-HHHHhCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 011111111232333 334455677643 4555668889999985
No 65
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=82.75 E-value=14 Score=41.58 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC--------------CCCCC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASY 272 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~--------------~~~~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~ 272 (698)
+..+..+++.|+++|+||.+|.+..+ .+... ....|. .+..+++-.+.-++++.+.|.+.
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s~ 240 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLSS 240 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 33456678889999999999987521 00100 011221 22222221123469999999976
Q ss_pred cchHHHHHHHHh-CCeeeeecccccCccc---------------H---HHHHHHHHHHHhhCCCCcEEEecCCCCCcc--
Q 005411 273 PFSKEASYLAYV-YPQVYLDFGLAIPKLS---------------V---QGMISSIKELLELAPTKKVMFSTDAYASPE-- 331 (698)
Q Consensus 273 p~~~e~~~la~~-~pnVy~d~s~~~~~~~---------------~---~g~~~~l~~~le~~~~~kilfgSD~~~~P~-- 331 (698)
+...++...++. -++|+++++....... + ..-+..+-+.+..+ ...+.|||..++..
T Consensus 241 ~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g--~i~~i~SDh~p~~~~~ 318 (447)
T cd01315 241 AEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENG--DIDMVVSDHSPCTPEL 318 (447)
T ss_pred HHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCC--ceeEEeCCCCCCCHHH
Confidence 554444443333 3467766554221110 0 00112222333211 23459999543321
Q ss_pred ------chhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 332 ------TYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 332 ------~~~~---~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.++. +.-.....+-.++...++++.+++.+ +-+.+..|++++++++
T Consensus 319 k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 319 KLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLED----IARLMCENPAKLFGLS 373 (447)
T ss_pred hccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 0000 00001112334445566677888754 5566778999999986
No 66
>PRK07369 dihydroorotase; Provisional
Probab=82.39 E-value=14 Score=41.34 Aligned_cols=161 Identities=16% Similarity=0.040 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--------CC---CCC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHH
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGD--------KD---LDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~--------~~---~~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e 277 (698)
.+..+++.+++.|.++.+|.--.. .+ ... ..+.|. .+..++.--+.-++++++.|.+-+..-+
T Consensus 163 ~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 242 (418)
T PRK07369 163 LLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVE 242 (418)
T ss_pred HHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 344556777788999999984311 00 000 112233 2222222112448999999998766555
Q ss_pred HHHHHHhCC-eeeeecccccCcccHH------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccc-----h
Q 005411 278 ASYLAYVYP-QVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKKVMFSTDAYASPET-----Y 333 (698)
Q Consensus 278 ~~~la~~~p-nVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~ 333 (698)
+..-++... +|+++++.+.-.++.. .-+..|-+.+.-+-++ +.+||--++... +
T Consensus 243 ~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~K~~~~ 320 (418)
T PRK07369 243 LIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVID--AIAIDHAPYTYEEKTVAF 320 (418)
T ss_pred HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHHccCCH
Confidence 555554433 7888887654222111 1123444555544455 689995444210 0
Q ss_pred h---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 334 F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 334 ~---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
| .+.--.--.|-.++...+..+.+++.+ +-+++..|++|+|+++
T Consensus 321 ~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~----~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 321 AEAPPGAIGLELALPLLWQNLVETGELSALQ----LWQALSTNPARCLGQE 367 (418)
T ss_pred hHCCCCceeHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 0 000001122444556677778888754 6677889999999995
No 67
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=78.69 E-value=27 Score=38.39 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+..++...++.+.++..+ +-+++..|+++++++.
T Consensus 292 l~~~~~~~~~~~~~~~~~----~~~~~t~npA~~lgl~ 325 (374)
T cd01317 292 LPLLWTLLVKGGLLTLPD----LIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 334455566677788754 6677889999999985
No 68
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=77.17 E-value=98 Score=33.17 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCC
Q 005411 212 IDYIFISSLEVAQFLDLPLQIHTGF 236 (698)
Q Consensus 212 ~d~~~~~~~e~a~e~glpvq~H~G~ 236 (698)
.+-.+..+++.|.++|+++.+|...
T Consensus 158 ~~e~l~~~~~~A~~~g~~v~~H~~~ 182 (342)
T cd01299 158 SEEELRAIVDEAHKAGLYVAAHAYG 182 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3444566789999999999999963
No 69
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=77.13 E-value=29 Score=38.45 Aligned_cols=153 Identities=18% Similarity=0.055 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhC-CCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 215 IFISSLEVAQFL-DLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 215 ~~~~~~e~a~e~-glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
.+..+.+.|.++ |+|+.+|...+....+ .....|..++.+.+. .+-+.++++.|+.+--..++..++.. +++
T Consensus 187 ~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~-g~lg~~~~~~H~~~~~~~~~~~l~~~--g~~ 263 (401)
T TIGR02967 187 QLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY-GLLGRRSVFAHCIHLSDEECQRLAET--GAA 263 (401)
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC-CCCCCCeEEEecccCCHHHHHHHHHc--CCe
Confidence 344557888998 9999999975432111 001112123333332 34467889999965434444445543 333
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~I 369 (698)
+...-..+.....| ...++++++.+ -++.+|||+...+... -.+..|... .+.... ...++.. +..++
T Consensus 264 v~~~P~~~~~~~~g-~~~~~~~~~~G--v~v~lGtD~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~---~~l~~- 331 (401)
T TIGR02967 264 IAHCPTSNLFLGSG-LFNLKKALEHG--VRVGLGTDVGGGTSFS--MLQTLREAY--KVSQLQ-GARLSPF---EAFYL- 331 (401)
T ss_pred EEEChHHHHHhccC-CCCHHHHHHCC--CeEEEecCCCCCCCcC--HHHHHHHHH--HHhhhc-CCCCCHH---HHHHH-
Confidence 32221110000001 11345555543 3899999964322111 111222211 111111 2235543 34443
Q ss_pred HHHHHHHHhcCCC
Q 005411 370 FALNAAQFYKINL 382 (698)
Q Consensus 370 l~~NA~rly~l~~ 382 (698)
.-.|+++.++++.
T Consensus 332 aT~~~A~~lg~~~ 344 (401)
T TIGR02967 332 ATLGGARALDLDD 344 (401)
T ss_pred HHHHHHHHhCCcC
Confidence 4567777888864
No 70
>PRK08323 phenylhydantoinase; Validated
Probab=75.08 E-value=30 Score=39.04 Aligned_cols=34 Identities=6% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+..++...+..+.+++.+ +-+++..|+++++++.
T Consensus 343 ~~~l~~~~~~~~~~~~~~----~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 343 MPLLFSEGVMTGRITLNR----FVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHhhHHHHHhCCC
Confidence 334444556667788754 5666789999999984
No 71
>PRK09059 dihydroorotase; Validated
Probab=74.52 E-value=32 Score=38.74 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC---CCC--------CC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcch
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~---~~~--------~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~ 275 (698)
+..+..+++.+++.|.++.+|.--.. .+. .+ ..+.|. .+..++.-.+..+.++.+.|.+.+-.
T Consensus 165 ~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~ 244 (429)
T PRK09059 165 TQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAES 244 (429)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHH
Confidence 33455667888899999999974321 000 00 122233 22222221246689999999987665
Q ss_pred HHHHHHHHhC-CeeeeecccccCcccHH------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccc----
Q 005411 276 KEASYLAYVY-PQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKKVMFSTDAYASPET---- 332 (698)
Q Consensus 276 ~e~~~la~~~-pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~kilfgSD~~~~P~~---- 332 (698)
-+++..++.- -+|+++++...-.+..+ .-+..|-+.+..+.++ +++||--++...
T Consensus 245 ~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id--~i~sDh~p~~~~~K~~ 322 (429)
T PRK09059 245 AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTID--IIVSSHDPQDVDTKRL 322 (429)
T ss_pred HHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCc--EEEeCCCCCCHHHCcC
Confidence 5555555443 37888887643221110 0112333333333322 256774443210
Q ss_pred -hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 333 -~~---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+| .+.--....+--++ ..+.++.+++.+ +-+++..|++|+|+|+
T Consensus 323 ~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~~----~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 323 PFSEAAAGAIGLETLLAAAL-RLYHNGEVPLLR----LIEALSTRPAEIFGLP 370 (429)
T ss_pred ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 01 00000111122222 457778888754 6667777999999994
No 72
>PRK08044 allantoinase; Provisional
Probab=73.72 E-value=43 Score=37.91 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCCcEEEEecCCCcchHHHHHHHHhC-CeeeeecccccCcccHHHH---------------HHHHHHHHhhCCCCcEE-
Q 005411 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQGM---------------ISSIKELLELAPTKKVM- 321 (698)
Q Consensus 259 ~~P~~~~vllH~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~g~---------------~~~l~~~le~~~~~kil- 321 (698)
+.-++++.+.|.+.+..-+.+.-+... .+++++++.....++.... ......+.+..--+.|-
T Consensus 232 ~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~ 311 (449)
T PRK08044 232 KVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDC 311 (449)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceE
Confidence 345789999998754333333323222 4677776654322211110 11123333332223333
Q ss_pred EecCCCCCccc-----hhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 322 FSTDAYASPET-----YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 322 fgSD~~~~P~~-----~~~---~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.+||--++... +|. +---....+-.++...|.++.+++.+ +-+.+..|++|+|+++
T Consensus 312 i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~----~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 312 LVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPM----FGKLMATNAADIFGLQ 375 (449)
T ss_pred EEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 89995444210 000 00000122444566777788898754 5556779999999994
No 73
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=73.00 E-value=4.9 Score=36.28 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=25.6
Q ss_pred cceeeeeccccCCCCCCCCCHHHHHHHHHH-HHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 005411 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAE-DLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (698)
Q Consensus 167 vgfksi~~y~~gl~~~~~~~~~ea~~~~~~-~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G 237 (698)
-|||+|+|-|..-+-+..++.++.+++.++ .|.- -...+....+..-.+..+.+...+...||.+|+..|
T Consensus 26 ~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 26 QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 399999999854433222333322222211 1110 001122222333333333455556666777777665
No 74
>PRK09228 guanine deaminase; Provisional
Probab=72.84 E-value=51 Score=37.07 Aligned_cols=108 Identities=15% Similarity=-0.015 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhC-CCcEEEecCCCCCCCCC---CCC-CccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCee
Q 005411 214 YIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RLS-NPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (698)
Q Consensus 214 ~~~~~~~e~a~e~-glpvq~H~G~G~~~~~~---~~~-~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnV 288 (698)
-.+..+.+.|.++ |+|+++|...+..+... .+. .|..++.+.+- .+-+-++++.|+.+--..++..|+..--+|
T Consensus 211 ~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~-G~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (433)
T PRK09228 211 EQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERY-GLLGPRAVFAHCIHLEDRERRRLAETGAAI 289 (433)
T ss_pred HHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHc-CCCCCCeEEEeccCCCHHHHHHHHHcCCeE
Confidence 3455668889997 99999999875322110 011 12123333332 233568999999665455555666543233
Q ss_pred eeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
-..... +..-..| ..-+.++++.+ -++.+|||+.
T Consensus 290 ~~~P~s--n~~lg~g-~~~~~~~~~~G--v~v~lGtD~~ 323 (433)
T PRK09228 290 AFCPTS--NLFLGSG-LFDLKRADAAG--VRVGLGTDVG 323 (433)
T ss_pred EECCcc--HHhhcCC-CcCHHHHHHCC--CeEEEecCCC
Confidence 222211 1100001 11345555544 4788999964
No 75
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=72.24 E-value=42 Score=36.89 Aligned_cols=140 Identities=24% Similarity=0.234 Sum_probs=67.8
Q ss_pred cEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcc--hHHHHHHHHhCCeeeeec-ccccCcccHHH--
Q 005411 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF--SKEASYLAYVYPQVYLDF-GLAIPKLSVQG-- 303 (698)
Q Consensus 229 pvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~--~~e~~~la~~~pnVy~d~-s~~~~~~~~~g-- 303 (698)
|+.+|++.+..+ ...+.++++..-.+...++..|+.... ..+...++..-..+.++. +... ..+..
T Consensus 192 ~i~vH~~~~~~~-------l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~--~~~~~~~ 262 (388)
T PRK10657 192 IVHVHMGDGKKG-------LQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDF--LGEGEVA 262 (388)
T ss_pred EEEEEeCCchHH-------HHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcc--cccCccC
Confidence 899999743111 112222332223344467788875421 123334443322333342 2111 00111
Q ss_pred HHHHHHHHHhhCC-CCcEEEecCCCC-Cccch------hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHH
Q 005411 304 MISSIKELLELAP-TKKVMFSTDAYA-SPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAA 375 (698)
Q Consensus 304 ~~~~l~~~le~~~-~~kilfgSD~~~-~P~~~------~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~ 375 (698)
-...+.++++.+. .+|++++||... .|... +.+.-.. ..+...+...+....++.. .+-+++-.|++
T Consensus 263 ~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~-~~l~~~~~~~~~~~gis~~----~~l~~aT~npA 337 (388)
T PRK10657 263 PAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSV-ESLLEEVRELVKDEGLPLE----DALKPLTSNVA 337 (388)
T ss_pred HHHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCch-hhHHHHHHHHHHhcCCCHH----HHHHHHHHHHH
Confidence 1245667777774 789999999522 12100 0000000 1122233344434456664 47788899999
Q ss_pred HHhcCCC
Q 005411 376 QFYKINL 382 (698)
Q Consensus 376 rly~l~~ 382 (698)
++|++..
T Consensus 338 ~~lg~~~ 344 (388)
T PRK10657 338 RFLKLNG 344 (388)
T ss_pred HHhCCCC
Confidence 9999864
No 76
>PRK07213 chlorohydrolase; Provisional
Probab=71.37 E-value=1.1e+02 Score=33.58 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCe
Q 005411 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (698)
Q Consensus 212 ~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pn 287 (698)
.+-.+..+++.|+++|+|+++|.+-...... ..-..| ++.+.+.+-.|+ ++.|+-+--..++..|+..--.
T Consensus 177 s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~--v~~~~~~G~~~~---~i~H~~~~~~~~i~~la~~g~~ 251 (375)
T PRK07213 177 SDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE--IERLINLGFKPD---FIVHATHPSNDDLELLKENNIP 251 (375)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh--HHHHHhcCCCCC---EEEECCCCCHHHHHHHHHcCCc
Confidence 3445667789999999999999975421100 001122 344444322344 3699865444566666655434
Q ss_pred eeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 005411 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (698)
Q Consensus 288 Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~ 367 (698)
|......-.. . ..| ..-++++++.+ =++.+|||+..+. ....+++.- ... ....++.. + +-
T Consensus 252 v~~~P~sn~~-l-~~g-~~~v~~l~~~G--v~v~lGTD~~~~~-----~~~~~~e~~-~~~----~~~~~~~~---~-~l 312 (375)
T PRK07213 252 VVVCPRANAS-F-NVG-LPPLNEMLEKG--ILLGIGTDNFMAN-----SPSIFREME-FIY----KLYHIEPK---E-IL 312 (375)
T ss_pred EEECCcchhh-h-ccC-CccHHHHHHCC--CEEEEeeCCCCCc-----hHhHHHHHH-HHH----HHhCcCHH---H-HH
Confidence 4443322110 0 001 12355666654 3889999974321 112232221 111 11135533 2 44
Q ss_pred HHHHHHHHHHhcCC
Q 005411 368 DIFALNAAQFYKIN 381 (698)
Q Consensus 368 ~Il~~NA~rly~l~ 381 (698)
+..-.|+++.++++
T Consensus 313 ~~aT~~gA~~lg~~ 326 (375)
T PRK07213 313 KMATINGAKILGLI 326 (375)
T ss_pred HHHHHHHHHHhCCC
Confidence 44557888888885
No 77
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=69.64 E-value=73 Score=35.71 Aligned_cols=105 Identities=17% Similarity=0.065 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCC-CcEEEecCCCCCCCCC---CC---CCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCe
Q 005411 215 IFISSLEVAQFLD-LPLQIHTGFGDKDLDL---RL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (698)
Q Consensus 215 ~~~~~~e~a~e~g-lpvq~H~G~G~~~~~~---~~---~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pn 287 (698)
.+..+.+.|.++| +++++|...+...... .+ ..| ++.+.+- .+-+.++++.|+.+--..++..++..--+
T Consensus 209 ~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p--~~~l~~~-G~l~~~~~l~H~~~l~~~~~~~l~~~g~~ 285 (429)
T cd01303 209 LLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDY--LDVYDKY-GLLTEKTVLAHCVHLSEEEFNLLKERGAS 285 (429)
T ss_pred HHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCH--HHHHHHC-CCCCCCcEEEeCCCCCHHHHHHHHHcCCE
Confidence 3455678889999 9999999754211100 00 112 2222221 23356899999976444455555544333
Q ss_pred eeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 288 Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
|...... +.....| ..-++++++.+ =++.+|||+.
T Consensus 286 v~~~P~s--n~~l~~g-~~~~~~~~~~G--v~v~lGtD~~ 320 (429)
T cd01303 286 VAHCPTS--NLFLGSG-LFDVRKLLDAG--IKVGLGTDVG 320 (429)
T ss_pred EEECccc--hhhhccC-CCCHHHHHHCC--CeEEEeccCC
Confidence 3322211 1000001 11345555544 3578999964
No 78
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=69.33 E-value=84 Score=35.26 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (698)
+..++...+.++.+++.+ +-+++..|++++|++..
T Consensus 345 l~~l~~~~v~~~~~~~~~----~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 345 MTLLFDEGVATGRITLEK----FVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHhhHHHHHcCCCC
Confidence 444556667677788754 66778899999999853
No 79
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=68.28 E-value=41 Score=39.03 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=37.0
Q ss_pred CCCcEEEecCCCC------Cccc-hhhhHHHHHHHHHHHHHhhhh--------cCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005411 316 PTKKVMFSTDAYA------SPET-YFLGAKRAREVVFSVLRDTCI--------DEDLSVGEAIEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 316 ~~~kilfgSD~~~------~P~~-~~~~~~~~R~~l~~vl~~~v~--------~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (698)
-+.|+++.||.+. ||.. .|+-++.+|+..-.-+-.++. +.++++ +.+-++...|+++.+|+
T Consensus 374 dp~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL----~EI~~mtTanPAkaLGL 449 (556)
T TIGR03121 374 DPWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSL----YEIAIMTRAGPAKLLGL 449 (556)
T ss_pred CcceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCH----HHHHHHHHHHHHHHhCC
Confidence 3479999999653 4443 244455566543211223332 234554 34667788999999999
Q ss_pred C
Q 005411 381 N 381 (698)
Q Consensus 381 ~ 381 (698)
.
T Consensus 450 ~ 450 (556)
T TIGR03121 450 T 450 (556)
T ss_pred C
Confidence 5
No 80
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=68.25 E-value=11 Score=31.34 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCC------CceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGK------GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gp------gQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmp 632 (698)
..++.+|.+.|.+.|+.|..+..+.-+ ++|.+.+.-.-| ... +.-.++.-++.+|++.|+..+|-|
T Consensus 10 ~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~-~~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 10 PGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGT-DLDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCC-CHHHHHHHHHHHHHHhcceEEecC
Confidence 357888999999999999999776654 777554433322 111 245788889999999999988754
No 81
>PRK06189 allantoinase; Provisional
Probab=67.92 E-value=46 Score=37.61 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=60.6
Q ss_pred CCCCcEEEEecCCCcchHHHHHHHHhC-CeeeeecccccCcccHH------------------HHHHHHHHHHhhCCCCc
Q 005411 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKK 319 (698)
Q Consensus 259 ~~P~~~~vllH~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~k 319 (698)
+..++++.+.|.+.+..-++..-++.. .+|+++++.....++.+ .-+..|.+++..+- -
T Consensus 229 ~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~--i 306 (451)
T PRK06189 229 QETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGE--I 306 (451)
T ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCC--c
Confidence 356788999998765443333333322 36777776543211111 11223444444332 2
Q ss_pred EEEecCCCCCccc------hhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 320 VMFSTDAYASPET------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 320 ilfgSD~~~~P~~------~~~---~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
...|||.-++... +|. +.--....+--++...+.++.+++.+ +-+++..|++++|+++
T Consensus 307 ~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~----~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 307 DMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLET----IARLLATNPAKRFGLP 373 (451)
T ss_pred eEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHH----HHHHHhhhHHHHhCCC
Confidence 3589996443210 000 00000112334455555677788754 5667779999999994
No 82
>PRK07583 cytosine deaminase-like protein; Validated
Probab=67.87 E-value=61 Score=36.47 Aligned_cols=56 Identities=11% Similarity=-0.042 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY 272 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~ 272 (698)
+..+..+++.|.++|+|+.+|++..+... ... +..+.+.+.+ ..++-++++.|+..
T Consensus 211 d~~l~~i~~lA~~~G~~v~vH~~E~~~~~--~~~-l~~~~~~~~~-~G~~~~v~i~H~~~ 266 (438)
T PRK07583 211 DAQLDRLFRLARERGLDLDLHVDETGDPA--SRT-LKAVAEAALR-NGFEGKVTCGHCCS 266 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeECCCCCch--HHH-HHHHHHHHHH-hCCCCCEEEEeccc
Confidence 45677889999999999999997532100 001 2223333322 34556799999853
No 83
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=67.28 E-value=52 Score=37.06 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (698)
+-.++...+.++.++..+ +-+.+..|++++|++
T Consensus 337 l~~~~~~~~~~~~l~~~~----~~~~~t~~pA~~~g~ 369 (443)
T TIGR03178 337 LDVMFDEAVQKRGLPLED----IARLMATNPAKRFGL 369 (443)
T ss_pred HHHHHHHHHHhcCCCHHH----HHHHHhHHHHHHcCC
Confidence 334455566677888754 666778899999998
No 84
>PRK08417 dihydroorotase; Provisional
Probab=66.63 E-value=98 Score=34.20 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCCC-----------CCCCCC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHH
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFG-----------DKDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G-----------~~~~~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e 277 (698)
.+..+++.++++|.||.+|.--. ..+... ..+.|. .+..+++--+.-+.++.+.|.+.+-.-+
T Consensus 131 ~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~ 210 (386)
T PRK08417 131 LLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLE 210 (386)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHH
Confidence 34445667778888888887331 000100 112232 1222222113457899999998765444
Q ss_pred HHHHHHhCC-eeeeecccccCcccHHHH---------------HHHHHHHHhhCCCCcE-EEecCCCCCccc-----hh-
Q 005411 278 ASYLAYVYP-QVYLDFGLAIPKLSVQGM---------------ISSIKELLELAPTKKV-MFSTDAYASPET-----YF- 334 (698)
Q Consensus 278 ~~~la~~~p-nVy~d~s~~~~~~~~~g~---------------~~~l~~~le~~~~~ki-lfgSD~~~~P~~-----~~- 334 (698)
+..-++... +|..++++..-.++.... ++-...+.+..--+.| +.+||--+++.- +|
T Consensus 211 ~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~~~~~ 290 (386)
T PRK08417 211 LLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDLAFDE 290 (386)
T ss_pred HHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhH
Confidence 444344332 677777765422211100 0112223332222334 489995444210 11
Q ss_pred --hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 335 --LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 335 --~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.+.--....+--++...|.++.+++.+ +-..+..|++++|+++
T Consensus 291 a~~G~~g~e~~~~~~~~~~v~~~~~~~~~----~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 291 AAFGIDSICEYFSLCYTYLVKEGIITWSE----LSRFTSYNPAQFLGLN 335 (386)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 111112223434455667778888754 6667889999999985
No 85
>PRK09061 D-glutamate deacylase; Validated
Probab=66.40 E-value=1.2e+02 Score=34.91 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHHHHhc
Q 005411 343 VVFSVLRDTCIDE-DLSVGEAIEVAKDIFALNAAQFYK 379 (698)
Q Consensus 343 ~l~~vl~~~v~~g-~l~~~ea~~~~~~Il~~NA~rly~ 379 (698)
.+.+.+..+|.++ .+++.+ +-+.+-.|++++++
T Consensus 401 ~~~~~l~~~v~~~~~isl~~----ai~~~T~~pA~~lg 434 (509)
T PRK09061 401 TFARFLREYVRERKALSLLE----AIRKCTLMPAQILE 434 (509)
T ss_pred chHHHHHHHHhhcccCCHHH----HHHHHHHHHHHHhc
Confidence 4566777787764 588754 44556677788888
No 86
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=65.96 E-value=90 Score=34.93 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=65.3
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccccC
Q 005411 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIP 297 (698)
Q Consensus 218 ~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~ 297 (698)
..++.+.++|+||..|.- |+. ...|...++. -+.. .|.+.. ..++..... .++|+.+...+.
T Consensus 125 ~~i~~A~~~g~~v~~Ha~-g~~--------~~~L~a~l~a--Gi~~----dH~~~~-~eea~e~l~--~G~~i~i~~g~~ 186 (422)
T cd01295 125 AKIQAAKKAGKPVDGHAP-GLS--------GEELNAYMAA--GIST----DHEAMT-GEEALEKLR--LGMYVMLREGSI 186 (422)
T ss_pred HHHHHHHhCCCEEEEeCC-CCC--------HHHHHHHHHc--CCCC----CcCCCc-HHHHHHHHH--CCCEEEEECccc
Confidence 345778899999999992 211 1234444442 2211 376432 234444332 477877653221
Q ss_pred cccHHHHHHHHHHHHhhCC---CCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q 005411 298 KLSVQGMISSIKELLELAP---TKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNA 374 (698)
Q Consensus 298 ~~~~~g~~~~l~~~le~~~---~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA 374 (698)
...++.+++..+ ..+++++||++ .|.. +.. + -.+..++...++. .++.. .+-+....|+
T Consensus 187 -------~~~~~~~~~~l~~~~~~~i~l~TD~~-~~~~-~~~-~---g~~~~v~r~a~~~-g~s~~----eal~~aT~n~ 248 (422)
T cd01295 187 -------AKNLEALLPAITEKNFRRFMFCTDDV-HPDD-LLS-E---GHLDYIVRRAIEA-GIPPE----DAIQMATINP 248 (422)
T ss_pred -------HhhHHHHHHhhhhccCCeEEEEcCCC-Cchh-hhh-c---chHHHHHHHHHHc-CCCHH----HHHHHHhHHH
Confidence 111222323222 48999999974 3431 110 0 0111222222233 35653 4667778899
Q ss_pred HHHhcC
Q 005411 375 AQFYKI 380 (698)
Q Consensus 375 ~rly~l 380 (698)
+++|++
T Consensus 249 A~~~gl 254 (422)
T cd01295 249 AECYGL 254 (422)
T ss_pred HHHcCC
Confidence 999998
No 87
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=65.57 E-value=26 Score=39.79 Aligned_cols=113 Identities=20% Similarity=0.156 Sum_probs=57.3
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 210 ~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
.+.+-.+..+++.|.++|++|.+|.. |+...+. .-..+..+....-+++.+.++.|+...-..++..++ .. +|.
T Consensus 291 ~~~~e~l~~~~~~a~~~g~~v~~Ha~-gd~~i~~---~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~-~~-gv~ 364 (479)
T cd01300 291 LISPEELEELVRAADEAGLQVAIHAI-GDRAVDT---VLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFA-KL-GVI 364 (479)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEe-cHHHHHH---HHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHH-Hc-CCc
Confidence 34455677778999999999999995 3321110 000122222211123678999999765433333333 22 344
Q ss_pred eecccccCcccH-------HHH-----HHHHHHHHhhCCCCcEEEecCCCCCc
Q 005411 290 LDFGLAIPKLSV-------QGM-----ISSIKELLELAPTKKVMFSTDAYASP 330 (698)
Q Consensus 290 ~d~s~~~~~~~~-------~g~-----~~~l~~~le~~~~~kilfgSD~~~~P 330 (698)
+.+.-.+..... -|. ..-++.+++.+ -++.+|||+...|
T Consensus 365 ~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~G--v~v~lGSD~~~~~ 415 (479)
T cd01300 365 ASVQPNHLYSDGDAAEDRRLGEERAKRSYPFRSLLDAG--VPVALGSDAPVAP 415 (479)
T ss_pred eEeCcccccCchHHHHHhcccHHHHhcCchHHHHHHCC--CeeeccCCCCCCC
Confidence 433221110000 010 11355666644 3788999965443
No 88
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=63.89 E-value=99 Score=33.93 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=42.2
Q ss_pred HHHHHHHHhhC-CCCcEEEecCCCC-CccchhhhH------HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHH
Q 005411 305 ISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (698)
Q Consensus 305 ~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~------~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (698)
...++.+++.+ +.+|++++||... .|.....+. --.. .+-..+...++.+.++.. .+-+++-.|+++
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~-~~~~~~~~~v~~~~i~~~----~al~~~T~npA~ 337 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVD-TLLREVREAVKCGDIPLE----VALRVITSNVAR 337 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHH-HHHHHHHHHHHhCCCCHH----HHHHHHHHHHHH
Confidence 35677777775 5689999999521 121100000 0011 122333455666778864 467788899999
Q ss_pred HhcCC
Q 005411 377 FYKIN 381 (698)
Q Consensus 377 ly~l~ 381 (698)
+|+++
T Consensus 338 ~lg~~ 342 (387)
T cd01308 338 ILKLR 342 (387)
T ss_pred HhCCC
Confidence 99986
No 89
>PRK02382 dihydroorotase; Provisional
Probab=63.83 E-value=68 Score=36.13 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCcEEEecCCCC------------CCCCC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHH
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGD------------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~------------~~~~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e 277 (698)
+..+++.++++|+|+.+|....+ .+... ..+.|. .+...+...+..++++.+.|.+.+..-+
T Consensus 163 l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~ss~~~~~ 242 (443)
T PRK02382 163 FEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHISTPEGVD 242 (443)
T ss_pred HHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 44456677788888888876421 00000 111232 1222222224678999999998655433
Q ss_pred HHHHHHhCCeeeeecccccCcccHH------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccc-----hh
Q 005411 278 ASYLAYVYPQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKKVMFSTDAYASPET-----YF 334 (698)
Q Consensus 278 ~~~la~~~pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~~ 334 (698)
++...+ |..+++...-.++.+ .-+..|-+.+.-+-++ +.+||-.++... +|
T Consensus 243 ---~i~~~~-vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~--~i~sDh~P~~~~~K~~~~~ 316 (443)
T PRK02382 243 ---AARREG-ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTID--VVASDHAPHTREEKDADIW 316 (443)
T ss_pred ---HHHHCC-cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCC--EEEcCCCCCCHHHhcCChh
Confidence 333333 666555432111100 1112233333322212 289996544210 00
Q ss_pred ---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 335 ---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 335 ---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.+.--....+ .++-..|.++.+++.+ +-+.+..|++++|+++
T Consensus 317 ~~~~G~~g~e~~~-~~~~~~~~~~~~~l~~----~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 317 DAPSGVPGVETML-PLLLAAVRKNRLPLER----VRDVTAANPARIFGLD 361 (443)
T ss_pred hCCCCcccHHHHH-HHHHHHHHcCCCCHHH----HHHHHhHHHHHHcCCC
Confidence 0000011112 2233567778888754 6667779999999995
No 90
>PRK08204 hypothetical protein; Provisional
Probab=62.62 E-value=1.2e+02 Score=34.04 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=53.7
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~ 295 (698)
+..+++.|.++|+++++|...+..+ .....++.+.+. .+.+.++++.|+.+--..++..|+.. ++++-....
T Consensus 203 l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~l~~~-g~~~~~~~i~H~~~~~~~~~~~la~~--g~~v~~~P~ 274 (449)
T PRK08204 203 ARADFRLARELGLPISMHQGFGPWG-----ATPRGVEQLHDA-GLLGPDLNLVHGNDLSDDELKLLADS--GGSFSVTPE 274 (449)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCcc-----cCCCHHHHHHHC-CCCCCCeEEEecCCCCHHHHHHHHHc--CCCEEEChH
Confidence 3445778899999999999754321 111234444442 34567888999976544455555533 222221111
Q ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.+.....+ ..-++++++.+ =++.+|||+.
T Consensus 275 ~~~~~g~~-~~~~~~~~~~G--v~v~lGtD~~ 303 (449)
T PRK08204 275 IEMMMGHG-YPVTGRLLAHG--VRPSLGVDVV 303 (449)
T ss_pred HHhhhcCC-CCcHHHHHhcC--CceeeccccC
Confidence 10000001 11245555554 4788999964
No 91
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.71 E-value=18 Score=33.09 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=35.2
Q ss_pred cceeeeeccccCCCCCCCCCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 005411 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (698)
Q Consensus 167 vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G 237 (698)
.|||||+|-|-.-+-+..|+-++.+++.+++--.-....+....+...-+.-+-+...|.+-||.-|+-.|
T Consensus 27 ~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 27 LGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred hccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 49999999995554433365544444433321000011111112222222222455567888888887655
No 92
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=61.31 E-value=65 Score=28.27 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeee
Q 005411 506 PREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQL 585 (698)
Q Consensus 506 PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~ 585 (698)
|...-+++++.|+ +.|..+..-.++||++.-+. ..-++.+...+.+.|..|+..
T Consensus 2 ~~~~n~~vl~~L~-~~Gddl~~~r~ieh~~~f~~-------------------------~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 2 QIIENREVLEALE-EDGDDLSKPRPIEHWFYFED-------------------------EEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp HHHHHHHHHHHHH-HHT--TTS-EEEEEEEEES--------------------------HHHHHHHHHHHHHHS---B--
T ss_pred cHHHHHHHHHHHH-hcCCCCCCCeEEEEEEEeCC-------------------------HHHHHHHHHHHHHCCCEEEEe
Confidence 3445578888888 57999999999999887541 356778899999999999987
Q ss_pred ec--CCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCe
Q 005411 586 HA--EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (698)
Q Consensus 586 h~--E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ 627 (698)
.. |-+.+.|.+.+.....+...+ +...-.-+-.+|+++|-.
T Consensus 56 ~~~~~d~~~~~~~~~~~~~~~~~~~-I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 56 EEDEEDGDGPYCLDISREMVLDYED-INAITQELEDLAKEFGGE 98 (104)
T ss_dssp --B-SS-SSBEEEEEEEEE-S-HHH-HHHHHHHHHHHHHHHT-E
T ss_pred ecccCCCCceEEEEEEEecCCCHHH-HHHHHHHHHHHHHHhCcE
Confidence 75 667888999998876655433 333444566778777754
No 93
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=60.86 E-value=63 Score=36.36 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC--CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeec
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~--~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~ 292 (698)
.+..+++.|.++|+++++|.+.+..... +....+..++.+.+. .+-+-++++.|+.+--..++..++.. ++.+-.
T Consensus 203 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~~i~~ 279 (443)
T PRK09045 203 NLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARL-GLLGPRLIAVHMTQLTDAEIALLAET--GCSVVH 279 (443)
T ss_pred HHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--CCeEEE
Confidence 4445578889999999999975321100 000011113333332 24455788899965434444555543 333321
Q ss_pred ccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
....+.. ......-++++++.+ -++.+|||+.
T Consensus 280 ~P~~~~~-~~~~~~~~~~l~~~G--v~v~lGtD~~ 311 (443)
T PRK09045 280 CPESNLK-LASGFCPVAKLLQAG--VNVALGTDGA 311 (443)
T ss_pred CHHHHhh-hccCCCcHHHHHHCC--CeEEEecCCC
Confidence 1110000 000011355666633 3678999965
No 94
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=60.56 E-value=2.3e+02 Score=31.06 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcc-----h-----HHHHHHHHh
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-----S-----KEASYLAYV 284 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~-----~-----~e~~~la~~ 284 (698)
.+....+.|+++|+|+.+|.+-... ...++++. .-++ .++.|+.+.. . .+....+ .
T Consensus 174 ~l~~~~~~A~~~g~~v~iH~~e~~~----------~~~~~~~~-l~~g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (379)
T PRK12394 174 PLTETLRIANDLRCPVAVHSTHPVL----------PMKELVSL-LRRG--DIIAHAFHGKGSTILTEEGAVLAEVRQA-R 239 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCc----------cHHHHHHh-cCCC--CEEEecCCCCCCCcCCCCCCChHHHHHH-H
Confidence 3444578888999999999975321 12223321 1122 3567774311 1 1222222 3
Q ss_pred CCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q 005411 285 YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364 (698)
Q Consensus 285 ~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~ 364 (698)
-.++++|...-- +...+ ..+.++++.+ .-..++|||.......... .. .+..++...++. .++..+
T Consensus 240 ~~G~~~~~~~g~---s~~~~-~~~~~~l~~G-~~~~~lgTD~~~~~~~~~~-~~----~l~~~~~~~~~~-~~~~~~--- 305 (379)
T PRK12394 240 ERGVIFDAANGR---SHFDM-NVARRAIANG-FLPDIISSDLSTITKLAWP-VY----SLPWVLSKYLAL-GMALED--- 305 (379)
T ss_pred hCCeEEEecCCc---cccch-HHHHHHHHCC-CCceEEECCCCCCCcccCc-cc----hHHHHHHHHHHc-CCCHHH---
Confidence 346777654421 11111 2334555443 2244789997653322111 01 122344444433 366644
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005411 365 VAKDIFALNAAQFYKIN 381 (698)
Q Consensus 365 ~~~~Il~~NA~rly~l~ 381 (698)
+=+..-.|++++++++
T Consensus 306 -~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 306 -VINACTHTPAVLMGMA 321 (379)
T ss_pred -HHHHHHHHHHHHhCCC
Confidence 4556678899999985
No 95
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=60.26 E-value=26 Score=29.00 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 005411 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (698)
Q Consensus 566 ~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATF 630 (698)
-++.++...|.+.|+.|+..+.-.-.|+|-..+.-.-+ .|+.-..+..+++++++.|+...+
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 57889999999999999999999999999877766555 557778999999999999998865
No 96
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=59.78 E-value=7.9 Score=41.30 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHh-CCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 005411 564 VSPVFQEVLADLHS-LNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (698)
Q Consensus 564 ~~~~~~~i~~~l~~-~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpK 633 (698)
..-|.+.++..|.+ .-|+=-.+..|. -+|.++.+|+-+|++|...|+.-||||-
T Consensus 248 lrGf~rAMvKtMt~alkiPHF~y~dEI----------------n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 248 LRGFSRAMVKTMTEALKIPHFGYVDEI----------------NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred chhHHHHHHHHHHHHhcCCcccccccc----------------ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 45677888888876 445544433332 3799999999999999999999999995
No 97
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=59.29 E-value=78 Score=34.51 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=62.4
Q ss_pred CCCcEEEEecCCCcchHHHHHHHHhC-CeeeeecccccCcccHH----------------HHHHHHHHHHhhCCCCcEEE
Q 005411 260 FSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQ----------------GMISSIKELLELAPTKKVMF 322 (698)
Q Consensus 260 ~P~~~~vllH~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~----------------g~~~~l~~~le~~~~~kilf 322 (698)
.-+.++++.|.+.+..-+++.-|+.. .+|+.+++...-.++.+ .-+..|-+.+.. ++ +.
T Consensus 146 ~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~dr~aL~~~l~~--id--~i 221 (344)
T cd01316 146 LHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTREDQEALWENLDY--ID--CF 221 (344)
T ss_pred HHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHHHHHHHHHHhc--CC--EE
Confidence 44788999998765544444444433 36888877654222111 112233333321 22 58
Q ss_pred ecCCCCCccch------hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 323 STDAYASPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 323 gSD~~~~P~~~------~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+||--++.... +.+.--+...+--++ ..|.+|.+++++ .-+++..|.+++|||.
T Consensus 222 ~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-~~v~~~~i~l~~----l~~~~s~nPAk~~gl~ 281 (344)
T cd01316 222 ATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-TAVHEGRLTIED----IVDRLHTNPKRIFNLP 281 (344)
T ss_pred EcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-HHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 99965443210 111111212232233 468888898854 7778899999999985
No 98
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=57.79 E-value=1.3e+02 Score=32.85 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccccCcccHH------------------HHHHHHHHHHhhCCCCcE
Q 005411 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKKV 320 (698)
Q Consensus 259 ~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~ki 320 (698)
+..+.++.+.|.+.+-.-+...-++ .+|+.+++...-.++.+ .-+..|.+.++.+- ..
T Consensus 168 ~~~~~~~hi~Hvs~~~~~~~i~~~k--~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~--id 243 (361)
T cd01318 168 RRHGARLHICHVSTPEELKLIKKAK--PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGR--ID 243 (361)
T ss_pred HHHCCCEEEEeCCCHHHHHHHHHhC--CCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCC--CC
Confidence 4678999999998765434333332 57888887653221111 11223444444332 23
Q ss_pred EEecCCCCCccc-----hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005411 321 MFSTDAYASPET-----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 321 lfgSD~~~~P~~-----~~---~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (698)
+++||.-++... +| .+.- ..+.+..++-.++.++.+++.+ +-+.+..|++++|+++.
T Consensus 244 ~i~SDh~P~~~~~k~~~~~~a~~G~~-g~e~~l~~~~~~v~~~~l~l~~----a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 244 VIASDHAPHTLEEKRKGYPAAPSGIP-GVETALPLMLTLVNKGILSLSR----VVRLTSHNPARIFGIKN 308 (361)
T ss_pred EEeeCCCCCCHHHccCChhhCCCCCc-cHHHHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCCC
Confidence 589994333210 00 0000 0111122333566777888754 56677788899999853
No 99
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=57.59 E-value=50 Score=37.16 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~ 290 (698)
.+..+.+.|.++|+++++|...+....+. ....| ++.+.+. .+-+-++++.|+.+--..+...|+..--+|-.
T Consensus 198 ~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~ 274 (435)
T PRK15493 198 LLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRP--VEYAASC-GLFKRPTVIAHGVVLNDNERAFLAEHDVRVAH 274 (435)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCcEEEEeecCCHHHHHHHHHcCCeEEE
Confidence 45556788999999999999864321100 01122 2323332 24456789999976555566566644333322
Q ss_pred ecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.... +..-..| ..-++++++.+ -++.+|||+.
T Consensus 275 ~P~s--n~~l~~g-~~p~~~~~~~G--v~v~lGtD~~ 306 (435)
T PRK15493 275 NPNS--NLKLGSG-IANVKAMLEAG--IKVGIATDSV 306 (435)
T ss_pred ChHH--HHHHhcC-cccHHHHHHCC--CeEEEccCcc
Confidence 2111 0000001 11345555544 4788999963
No 100
>PRK09237 dihydroorotase; Provisional
Probab=57.11 E-value=1.9e+02 Score=31.67 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005411 364 EVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 364 ~~~~~Il~~NA~rly~l~ 381 (698)
+.+-++...|++++|+++
T Consensus 299 ~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 299 EEVIAAVTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 447778889999999984
No 101
>PRK13404 dihydropyrimidinase; Provisional
Probab=56.53 E-value=1.3e+02 Score=34.29 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 344 l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+.-++...+..+.+++.+ +-+++..|++|++++.
T Consensus 352 l~~ll~~~v~~~~ls~~~----~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 352 LPLLFSEGVVKGRISLNR----FVALTSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 444555566667788754 6677889999999984
No 102
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=54.85 E-value=62 Score=35.54 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCC--C--CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD--L--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~--~--~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
-.+..+++.|.++|+++.+|.+-...... . ....+ ++.+.+. ...+.++.+.|+.+--..++..++ .. ++.
T Consensus 194 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~H~~~l~~~~~~~l~-~~-gi~ 268 (411)
T cd01298 194 ELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRP--VEYLEEL-GLLGPDVVLAHCVWLTDEEIELLA-ET-GTG 268 (411)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHH-Hc-CCe
Confidence 34555678889999999999853211000 0 00111 2222222 344678899998654333333333 32 344
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
+-+....+.....+ ..-++++++.+. ++.+|||+..
T Consensus 269 ~~~~p~~~~~~~~~-~~~~~~~~~~Gv--~~~~GsD~~~ 304 (411)
T cd01298 269 VAHNPASNMKLASG-IAPVPEMLEAGV--NVGLGTDGAA 304 (411)
T ss_pred EEEChHHhhhhhhC-CCCHHHHHHCCC--cEEEeCCCCc
Confidence 43322111100001 123566666443 5779999653
No 103
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=51.42 E-value=75 Score=35.78 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~ 290 (698)
.+..+.+.|.++|+++++|...+...... ....| ++.+.+. .+.+-++++.|+.+--..++..|+.. ++.+
T Consensus 215 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~--g~~v 289 (451)
T PRK08203 215 LMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRP--VDYLEDL-GWLGPDVWLAHCVHLDDAEIARLART--GTGV 289 (451)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEeCCCHHHHHHHHhc--CCeE
Confidence 34455788899999999999654211100 00112 2222222 34467889999966544555555544 2222
Q ss_pred ecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
-.....+..-..+ ..-++++++.+. ++.+|||+.
T Consensus 290 ~~~P~~~~~l~~~-~~~~~~~~~~Gv--~v~lGtD~~ 323 (451)
T PRK08203 290 AHCPCSNMRLASG-IAPVRELRAAGV--PVGLGVDGS 323 (451)
T ss_pred EECcHHhhhhccC-CCCHHHHHHCCC--eEEEecCCC
Confidence 1111100000000 113556666543 788999964
No 104
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=50.83 E-value=94 Score=35.54 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCC--CCCCccchHHHHhhcCCCCcEEEEecCCCcch---------HHHH
Q 005411 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEAS 279 (698)
Q Consensus 211 l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~--~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~---------~e~~ 279 (698)
..+-.+..+.+.|.++|+|+++|+.-|+...+. .......++.+.+ ..+.+-++++.|+.+--. .++.
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~-~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~ 296 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLAD-VGLLGPRLLIPHATYISGSPRLNYSGGDDLA 296 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHH-cCCCCCCcEEEEEEEcCCccccccCCHHHHH
Confidence 344456667889999999999999655321110 0001111332333 234567899999864333 4555
Q ss_pred HHHHhCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCC
Q 005411 280 YLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (698)
Q Consensus 280 ~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (698)
.++.. ++++......+.....+ ...++++++.+ =++.+|||+
T Consensus 297 ~la~~--g~~v~~~P~~~~~~g~~-~~p~~~l~~~G--v~v~lGtD~ 338 (488)
T PRK06151 297 LLAEH--GVSIVHCPLVSARHGSA-LNSFDRYREAG--INLALGTDT 338 (488)
T ss_pred HHHhc--CCEEEECchhhhhhccc-cccHHHHHHCC--CcEEEECCC
Confidence 55543 34443221111000001 12355666544 368899997
No 105
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=50.82 E-value=28 Score=28.29 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCC
Q 005411 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGL 626 (698)
Q Consensus 569 ~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl 626 (698)
+++.+.|..+|+.++. .+ ..+++++..++-.. ++...-.+|-+||+-+|+
T Consensus 22 ~ei~~~L~~lg~~~~~--~~-~~~~~~v~~P~~R~-----Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--SG-DDDTLEVTVPSYRF-----DILIEADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--cC-CCCeEEEECCCCcc-----ccCcccHHHHHHHHHhCC
Confidence 6799999999999964 11 14678888887543 444445578999999986
No 106
>PRK06361 hypothetical protein; Provisional
Probab=50.61 E-value=1.1e+02 Score=30.41 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=53.7
Q ss_pred EEEecCCCcchHHHHHHHHhCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHH
Q 005411 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344 (698)
Q Consensus 265 ~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l 344 (698)
-|++|+++.. .+.+..+ .-.++|+++...-. . .......++.+.+. + -+++.|||++ -|+... ..+.
T Consensus 115 dvlaHpd~~~-~~~~~~~-~~~~~~lEin~~~~-~-~~~~~~~l~~a~~~-g-i~vv~~SDaH-~~~d~~-~~~~----- 181 (212)
T PRK06361 115 DILAHPGLIT-EEEAELA-AENGVFLEITARKG-H-SLTNGHVARIAREA-G-APLVINTDTH-APSDLI-TYEF----- 181 (212)
T ss_pred cEecCcchhh-HHHHHHH-HHcCeEEEEECCCC-c-ccchHHHHHHHHHh-C-CcEEEECCCC-CHHHHH-HHHH-----
Confidence 7889997643 3444444 33478888764211 1 11112344444444 4 3489999998 565321 1111
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005411 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 345 ~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (698)
+....++..++. +.+..++-.|.+++++.
T Consensus 182 ---~~~i~~~~gl~~----~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 182 ---ARKVALGAGLTE----KELEEALENNPKLLLKR 210 (212)
T ss_pred ---HHHHHcCCCCCH----HHHHHHHHHhHHHHHHh
Confidence 122223344543 66999999999999864
No 107
>PRK08418 chlorohydrolase; Provisional
Probab=50.46 E-value=1.6e+02 Score=32.71 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCC--------------------CCCCCccchHHHHhhcCCCCcEEEEecCCCcch
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLD--------------------LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS 275 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~--------------------~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~ 275 (698)
+..+.+.|.++|+|+++|..-+..... .+...|. +.+.. +-..+.++.|+.+--.
T Consensus 192 l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv--~~l~~---~g~~~~~~~H~~~~~~ 266 (408)
T PRK08418 192 AKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPK--EFLEL---FKGLRTLFTHCVYASE 266 (408)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHH--HHHHH---hCCCCeEEEecccCCH
Confidence 444578889999999999986321100 0011232 11222 2234679999977666
Q ss_pred HHHHHHHHhCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 276 KEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 276 ~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.++..|+..--+|-.-... +..-..| ..-++++++.+ =++-+|||+.
T Consensus 267 ~di~~la~~g~~v~~cP~s--n~~lg~g-~~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 267 EELEKIKSKNASITHCPFS--NRLLSNK-ALDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred HHHHHHHHcCCcEEECHhH--HHHhcCC-CccHHHHHhCC--CeEEEeCCCC
Confidence 6777777553333221110 0000001 11345555544 4788999964
No 108
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.36 E-value=24 Score=30.02 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpK 633 (698)
.-++.++.+.|.+.|+.|...+.-+-.|+|-+.+.-.-+ ...+++-.++.-++.+|.+.|+..++-+.
T Consensus 12 pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 12 VGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 358899999999999999999998888888766544433 11334667889999999999999988654
No 109
>PRK00194 hypothetical protein; Validated
Probab=50.19 E-value=22 Score=30.29 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmp 632 (698)
--++.++...|.+.|+.|..++...-.|.|.+.+.-.-+ ...++.-.+++-+++++.+.|+..+|.+
T Consensus 14 pGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 80 (90)
T PRK00194 14 VGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQH 80 (90)
T ss_pred CCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 368899999999999999999999888888774332211 1112245677889999999999998854
No 110
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=49.63 E-value=3.7e+02 Score=29.09 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcE
Q 005411 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR 264 (698)
Q Consensus 185 ~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~ 264 (698)
.|++|..+.+.+..... ....+..+..+++.|.++|+|+..|.... +.......+ . ++.
T Consensus 141 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~A~~~gl~vasH~d~~----------~~~v~~a~~---~-Gv~ 199 (325)
T cd01306 141 LSDEEVEEAILERKARA-------AAYAPANRSELAALARARGIPLASHDDDT----------PEHVAEAHE---L-GVV 199 (325)
T ss_pred CCHHHHHHHHHHHHHHh-------hhcCHHHHHHHHHHHHHCCCcEEEecCCC----------hHHHHHHHH---C-CCe
Confidence 36788888777766532 12223345667899999999999999642 122333333 1 344
Q ss_pred EEEecCCCcchHHHHHHHHhCCeeeeeccc--ccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHH
Q 005411 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGL--AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRARE 342 (698)
Q Consensus 265 ~vllH~g~p~~~e~~~la~~~pnVy~d~s~--~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~ 342 (698)
++ - +|-..+.+..+... ++++..+. ....-+..|.. .++++++.+. .+.++||.. |.. ....
T Consensus 200 ~~-E---~p~t~e~a~~a~~~-G~~vv~gapn~lrg~s~~g~~-~~~~ll~~Gv--~~al~SD~~--p~s------ll~~ 263 (325)
T cd01306 200 IS-E---FPTTLEAAKAAREL-GLQTLMGAPNVVRGGSHSGNV-SARELAAHGL--LDILSSDYV--PAS------LLHA 263 (325)
T ss_pred ec-c---CCCCHHHHHHHHHC-CCEEEecCcccccCccccccH-hHHHHHHCCC--eEEEEcCCC--cHh------HHHH
Confidence 33 1 23344444444322 33333221 00000001211 2455555443 467999942 211 1111
Q ss_pred HHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 343 ~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.+ .++....++..+ +=+..-.|++++++++
T Consensus 264 ~~-----~la~~~gl~l~e----Al~~aT~nPA~~lGl~ 293 (325)
T cd01306 264 AF-----RLADLGGWSLPE----AVALVSANPARAVGLT 293 (325)
T ss_pred HH-----HHHHHcCCCHHH----HHHHHhHHHHHHcCCC
Confidence 11 122234577654 4455667899999986
No 111
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.38 E-value=23 Score=36.65 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=41.8
Q ss_pred ccCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHH---HHhhcCCCCcEEEEecC--CCcch----
Q 005411 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRA---ILEDKRFSKCRFVLLHA--SYPFS---- 275 (698)
Q Consensus 205 ~~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~---l~~~~~~P~~~~vllH~--g~p~~---- 275 (698)
.+....+.. +|+++.+++.|+||.+=||... -..++. +++ +-.+-+++++|| +||--
T Consensus 94 KIaS~dl~n---~~lL~~~A~tgkPvIlSTG~st---------l~EI~~Av~~~~--~~~~~~l~llHC~s~YP~~~e~~ 159 (241)
T PF03102_consen 94 KIASGDLTN---LPLLEYIAKTGKPVILSTGMST---------LEEIERAVEVLR--EAGNEDLVLLHCVSSYPTPPEDV 159 (241)
T ss_dssp EE-GGGTT----HHHHHHHHTT-S-EEEE-TT-----------HHHHHHHHHHHH--HHCT--EEEEEE-SSSS--GGG-
T ss_pred EeccccccC---HHHHHHHHHhCCcEEEECCCCC---------HHHHHHHHHHHH--hcCCCCEEEEecCCCCCCChHHc
Confidence 334444443 4678889999999999999752 111222 232 235789999998 67743
Q ss_pred --HHHHHHHHhCCeeeeecccc
Q 005411 276 --KEASYLAYVYPQVYLDFGLA 295 (698)
Q Consensus 276 --~e~~~la~~~pnVy~d~s~~ 295 (698)
+.+..|...|+ +-++.|--
T Consensus 160 NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 160 NLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp -TTHHHHHHHHST-SEEEEEE-
T ss_pred ChHHHHHHHHhcC-CCEEeCCC
Confidence 23557778898 66666653
No 112
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=47.81 E-value=3.3e+02 Score=31.67 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005411 364 EVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 364 ~~~~~Il~~NA~rly~l~ 381 (698)
+.+-.++..|.+++++|+
T Consensus 430 eei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 430 YEIAIMTRAGPAKLLGLS 447 (541)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 347778889999999995
No 113
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=46.91 E-value=1.3e+02 Score=31.02 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~ 295 (698)
+..+++.|.++|+|+++|.+...... ....++.+++ ..|+ + +.|+.+--.++...++.. ++.+-..-.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-----g~~~i~~~~~--~~~~--~-i~H~~~l~~~~~~~la~~--g~~v~~~P~ 194 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-----GMTDIERALD--LEPD--L-LVHGTHLTDEDLELVREN--GVPVVLCPR 194 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-----CchhHHHHHh--CCCC--E-EEEcCCCCHHHHHHHHHc--CCcEEEChh
Confidence 67789999999999999998542211 1112555555 3343 3 479865544555555543 233222211
Q ss_pred cCcccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
.+.....|. ..++++++.+ =++.+|||+..
T Consensus 195 sn~~l~~g~-~p~~~l~~~G--v~v~lGtD~~~ 224 (263)
T cd01305 195 SNLYFGVGI-PPVAELLKLG--IKVLLGTDNVM 224 (263)
T ss_pred hHHHhCCCC-CCHHHHHHCC--CcEEEECCCCc
Confidence 110000011 1355666654 58889999643
No 114
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.13 E-value=41 Score=27.63 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 005411 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (698)
Q Consensus 566 ~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmp 632 (698)
-++.++.+.|.+.|+.|+.++.-.-.|+|-+.+.-.-| ...++-.++..+..+|++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 57899999999999999999777767777665433222 111355678899999999999987643
No 115
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=43.95 E-value=4.3e+02 Score=28.38 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=72.1
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecC--CCcch--------HHHHHHHHhCCeee
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFS--------KEASYLAYVYPQVY 289 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~--g~p~~--------~e~~~la~~~pnVy 289 (698)
.+++...++|+.+|+|-. |...+++++ ++..-.| +.|| |.|.. +.-...| .-..|-
T Consensus 178 ~~ia~~~klPlmvHigeP----------p~~~dEvle--rL~~GDI-itHcfngkpn~~l~~dg~vr~~vrra-~erGV~ 243 (386)
T COG3964 178 LRIANDLKLPLMVHIGEP----------PVLMDEVLE--RLRRGDI-ITHCFNGKPNTILTDDGVVRAEVRRA-RERGVI 243 (386)
T ss_pred HHHHhhcCCceEEecCCC----------CccHHHHHH--hccCCce-eeeeccCCCCCccccchhHHHHHHHH-HhcceE
Confidence 577889999999999952 345677777 4543333 3455 33321 1111222 235799
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~I 369 (698)
+|.+--....|-. .-+.++..+. =-.+.+||-+.+-...|+... |..++..+..- .+++.+ +-.-
T Consensus 244 fD~ghG~asfsf~----vAr~aia~Gl-lP~~ISSDlh~~~~~n~Pv~d-----la~~mSKllal-gmpl~~----Vi~a 308 (386)
T COG3964 244 FDAGHGRASFSFN----VARRAIANGL-LPDIISSDLHTITKLNGPVYD-----LAWIMSKLLAL-GMPLTD----VINA 308 (386)
T ss_pred EEccCCcceeeHH----HHHHHHhcCC-CcceeeccceeeeecCchHHH-----HHHHHHHHHHc-CCcHHH----HHHH
Confidence 9987543222221 3334443333 233458996654433343332 23333333332 355543 4445
Q ss_pred HHHHHHHHhcCCC
Q 005411 370 FALNAAQFYKINL 382 (698)
Q Consensus 370 l~~NA~rly~l~~ 382 (698)
+-.|++++.+++.
T Consensus 309 vT~npA~~i~l~~ 321 (386)
T COG3964 309 VTHNPAVLIGLAE 321 (386)
T ss_pred HhcCHHHHhCccc
Confidence 5689999999873
No 116
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=42.66 E-value=2e+02 Score=32.09 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
-.+..+++.+.++|+|+++|.+.+..... .....| .. ++.+-.+-+-++++.|+.+--..++..++.. +++
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~-~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~--g~~ 263 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSP--VV-LLDEIGFLNEDVIAAHGVWLSSRDIRILASA--GVT 263 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCH--HH-HHHHcCCCCCCcEEEEeecCCHHHHHHHHhc--CCE
Confidence 44555678889999999999976421100 001122 22 2221123356788999864433444444432 344
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
+......+.....|. .-++++++.+ -++.+|||+.
T Consensus 264 v~~~P~sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 298 (424)
T PRK08393 264 VAHNPASNMKLGSGV-MPLRKLLNAG--VNVALGTDGA 298 (424)
T ss_pred EEECHHHHHhhccCC-CCHHHHHHCC--CcEEEecCCC
Confidence 433221110000011 1245555544 5888999964
No 117
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=42.63 E-value=51 Score=30.63 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=13.4
Q ss_pred ceeeeeccccCCCCCCCCC
Q 005411 168 GLKSIAAYRSGLEINPHVT 186 (698)
Q Consensus 168 gfksi~~y~~gl~~~~~~~ 186 (698)
|||+|++.|..-+....++
T Consensus 27 GiktVIdlR~~~E~~~~p~ 45 (135)
T TIGR01244 27 GFKTVINNRPDREEESQPD 45 (135)
T ss_pred CCcEEEECCCCCCCCCCCC
Confidence 8999999997655443344
No 118
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=41.48 E-value=1.8e+02 Score=32.06 Aligned_cols=105 Identities=20% Similarity=0.178 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCC----------------------CCCCccchHHHHhhcCCCCcEEEEecCCCc
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLDL----------------------RLSNPLHLRAILEDKRFSKCRFVLLHASYP 273 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~~----------------------~~~~p~~L~~l~~~~~~P~~~~vllH~g~p 273 (698)
+..+.+.|+++|+|+++|..-+..+... ....| ++.+.+. .+-+-++++.|+.+-
T Consensus 165 l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~p--v~~l~~~-g~L~~~~~~~H~~~l 241 (381)
T cd01312 165 AQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATA--IDFLDML-GGLGTRVSFVHCVYA 241 (381)
T ss_pred HHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCH--HHHHHHc-CCCCCCcEEEECCcC
Confidence 4445788899999999999854211000 01123 2323221 233558899999765
Q ss_pred chHHHHHHHHhCCeeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005411 274 FSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (698)
Q Consensus 274 ~~~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (698)
-.+++..++..- +.+-.....+..-..| ..-++++++.+ -++-+|||+..
T Consensus 242 ~~~~~~~l~~~g--~~v~~~P~sn~~lg~g-~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 242 NLEEAEILASRG--ASIALCPRSNRLLNGG-KLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred CHHHHHHHHHcC--CeEEECcchhhhhcCC-CcCHHHHHHCC--CcEEEeCCCCc
Confidence 555666666543 2221111111000001 11345555544 47889999753
No 119
>PRK07627 dihydroorotase; Provisional
Probab=41.34 E-value=2.4e+02 Score=31.67 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC---CCC--------CC-CCCCcc-----chHHHHhhcCCCCcEEEEecCCCcchHH
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~---~~~--------~~-~~~~p~-----~L~~l~~~~~~P~~~~vllH~g~p~~~e 277 (698)
.+..+++.+++.|.++.+|.--.. .+. .. ..+.|. .+..++.--+.-+.++.+.|.+-+..-+
T Consensus 162 ~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 241 (425)
T PRK07627 162 VLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVA 241 (425)
T ss_pred HHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 345556778888999999985311 000 00 112232 2222222113557999999998765555
Q ss_pred HHHHHHhC-Ceeeeecccc
Q 005411 278 ASYLAYVY-PQVYLDFGLA 295 (698)
Q Consensus 278 ~~~la~~~-pnVy~d~s~~ 295 (698)
++.-++.. -+|+++++..
T Consensus 242 ~i~~ak~~g~~vt~Ev~ph 260 (425)
T PRK07627 242 LVRAAKAEGLPVTCDVGVN 260 (425)
T ss_pred HHHHHHHCCCCeEEEeccc
Confidence 55444433 2677777653
No 120
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=40.76 E-value=1.7e+02 Score=32.86 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCee
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnV 288 (698)
+..+..+++.|.++|+|+++|..-+....+. .-..| ++.+.+- .+-+-++++.|+.+--..+...++.. ++
T Consensus 189 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~--i~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~ 263 (430)
T PRK06038 189 EEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCS--VNYLDDI-GFLGPDVLAAHCVWLSDGDIEILRER--GV 263 (430)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEecCCHHHHHHHHhc--CC
Confidence 3445566788999999999999764211100 00112 2222221 34467889999976555555555543 22
Q ss_pred eeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.+-..-..+.....+. .-++++++.+ =++-+|||+.
T Consensus 264 ~v~~~P~~n~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 299 (430)
T PRK06038 264 NVSHNPVSNMKLASGI-APVPKLLERG--VNVSLGTDGC 299 (430)
T ss_pred EEEEChHHhhhhccCC-CCHHHHHHCC--CeEEEeCCCC
Confidence 2221111111000011 1355666654 3678999964
No 121
>PRK06687 chlorohydrolase; Validated
Probab=38.94 E-value=1.9e+02 Score=32.17 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~ 290 (698)
.+..+++.|.++|+++++|.+-...... .....| ++.+.+. .+-+-++++.|+.+.-..+...++..--+|-.
T Consensus 197 ~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~ 273 (419)
T PRK06687 197 LLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRP--LAFLEEL-GYLDHPSVFAHGVELNEREIERLASSQVAIAH 273 (419)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCH--HHHHHHc-CCCCCCeEEEEEecCCHHHHHHHHHcCCeEEE
Confidence 3455678888999999999976421100 001112 2222221 23455788999976655566666543212211
Q ss_pred ecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
... .+.....|+ .-++++++.+ =++-+|||+.
T Consensus 274 ~P~--sn~~l~~g~-~p~~~~~~~G--v~v~lGtD~~ 305 (419)
T PRK06687 274 NPI--SNLKLASGI-APIIQLQKAG--VAVGIATDSV 305 (419)
T ss_pred CcH--HhhhhccCC-CcHHHHHHCC--CeEEEeCCCC
Confidence 110 000000011 1245555543 3677999963
No 122
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=38.10 E-value=2.7e+02 Score=31.04 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
-.+..+.+.|.+ |+++++|.+-+...... ....| ++.+.+. .+-+-++++.|+.+--..++..|+..--+|-
T Consensus 207 e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~--i~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~ 282 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRP--VELLLDH-GHLDARWCLVHATHLTDNETLLLGRSGAVVG 282 (418)
T ss_pred HHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 344556788889 99999999754211100 01123 3333332 2335678999997654456556654433332
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.-...-.. + ..|+ .-++++++.+ =++-+|||+.
T Consensus 283 ~~P~sn~~-l-g~g~-~p~~~l~~~G--v~v~lGtD~~ 315 (418)
T cd01313 283 LCPTTEAN-L-GDGI-FPAAALLAAG--GRIGIGSDSN 315 (418)
T ss_pred ECCCchhh-c-cCCC-CCHHHHHHCC--CcEEEecCCC
Confidence 22211000 0 0011 1244555544 3788999964
No 123
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=37.78 E-value=5.2e+02 Score=27.42 Aligned_cols=100 Identities=18% Similarity=0.059 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhCC-CcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCc-chHHHH-HHHHhCCeeee
Q 005411 214 YIFISSLEVAQFLD-LPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FSKEAS-YLAYVYPQVYL 290 (698)
Q Consensus 214 ~~~~~~~e~a~e~g-lpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p-~~~e~~-~la~~~pnVy~ 290 (698)
..+.+.++.+.+.| +++.+|.|-. ..|..+.+.+. -. .--+.|+-+- ...+.. .++.. ++-+
T Consensus 153 ~~f~~~~~~ar~~g~l~~t~HaGE~--------~~~~~v~~~~~--~~---~~RIgHg~~~~~~p~~~~~l~~~--~i~i 217 (305)
T cd00443 153 RDFYSYYEYARRLGLLGLTLHCGET--------GNREELLQALL--LL---PDRIGHGIFLLKHPELIYLVKLR--NIPI 217 (305)
T ss_pred HHHHHHHHHHHHcCCcceEEeecCC--------CChHHHHHHHH--hc---cceeeceEecCCCHHHHHHHHHc--CCEE
Confidence 34578899999999 9999999963 22333444444 12 3345565221 111222 33322 3333
Q ss_pred ecccccCccc---HHHHHHHHHHHHhhCCCCcEEEecCCCCCc
Q 005411 291 DFGLAIPKLS---VQGMISSIKELLELAPTKKVMFSTDAYASP 330 (698)
Q Consensus 291 d~s~~~~~~~---~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (698)
.++...+... ......-++.+++.+ -++..+||.+.+-
T Consensus 218 e~CP~SN~~~~~~~~~~~hP~~~~~~~G--~~v~i~TDd~~~~ 258 (305)
T cd00443 218 EVCPTSNVVLGTVQSYEKHPFMRFFKAG--LPVSLSTDDPGIF 258 (305)
T ss_pred EECcchhhhhcCCCChhhChHHHHHHCC--CeEEEeCCCCccc
Confidence 3332221110 000112356666654 3888999976543
No 124
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=36.91 E-value=2.5e+02 Score=31.43 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~~----~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~ 290 (698)
.+..+.+.+.++|+++++|...+....+. ....| +..+.+. .+.+-++++.|+.+--..++..++.. ++.+
T Consensus 200 ~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~~~~~~~l~H~~~~~~~~~~~~~~~--g~~v 274 (445)
T PRK07228 200 LLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRN--IHYLDEV-GLTGEDLILAHCVWLDEEEREILAET--GTHV 274 (445)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCcEEEEEecCCHHHHHHHHHc--CCeE
Confidence 44556788899999999999643211100 00111 2222221 23456889999975443444444433 3333
Q ss_pred ecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
-..-..+.....+ ..-++++++.+ -++.+|||+.
T Consensus 275 ~~~P~~~~~~~~~-~~p~~~~~~~G--v~v~lGtD~~ 308 (445)
T PRK07228 275 THCPSSNLKLASG-IAPVPDLLERG--INVALGADGA 308 (445)
T ss_pred EEChHHhhhcccc-cCcHHHHHHCC--CeEEEcCCCC
Confidence 2111111000011 12355666644 4677999964
No 125
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=36.46 E-value=4.2e+02 Score=28.78 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
.++.. .+-+....|++++|+++
T Consensus 292 g~~~~----ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 292 GYSLE----EVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCHH----HHHHHHHHHHHHHhCCC
Confidence 36654 46778889999999995
No 126
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=36.32 E-value=4.1e+02 Score=28.71 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~ 236 (698)
.-.+..+++.|.++|+++.+|.+.
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcC
Confidence 445666789999999999999975
No 127
>PRK06886 hypothetical protein; Validated
Probab=36.25 E-value=3.3e+02 Score=29.48 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHH----hhcCCCCcEEEEecCC
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAIL----EDKRFSKCRFVLLHAS 271 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~----~~~~~P~~~~vllH~g 271 (698)
-.+..++++|.++|+||.+|+..++... ...++.++ +. .+-+ ++++.|+.
T Consensus 162 e~l~~~~~lA~~~g~~Id~Hlde~~~~~------~~~le~l~~~~~~~-Gl~g-rV~~sH~~ 215 (329)
T PRK06886 162 EAMDILLDTAKSLGKMVHVHVDQFNTPK------EKETEQLCDKTIEH-GMQG-RVVAIHGI 215 (329)
T ss_pred HHHHHHHHHHHHcCCCeEEeECCCCchh------HHHHHHHHHHHHHc-CCCC-CEEEEEec
Confidence 3456678999999999999998753100 12233333 33 4544 79999984
No 128
>PRK12393 amidohydrolase; Provisional
Probab=34.80 E-value=4e+02 Score=30.09 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCee
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnV 288 (698)
+..+..+.+.+.++|+|+++|.+.+...+. .....| ++.+.+ -.+-+-++++.|+.+.-..+...++..--+|
T Consensus 217 ~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~--~~~l~~-~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v 293 (457)
T PRK12393 217 PELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTP--VQFVAE-HDWLGPDVWFAHLVKLDAEEIALLAQTGTGI 293 (457)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCH--HHHHHH-cCCCCCCeEEEEEecCCHHHHHHHHHcCCeE
Confidence 345566678889999999999975421000 001122 111211 1233557889999766555665666443222
Q ss_pred eeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
-.-.. .+.....|+ .-++++++.+ -++.+|||+.
T Consensus 294 ~~~P~--sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 327 (457)
T PRK12393 294 AHCPQ--SNGRLGSGI-APALAMEAAG--VPVSLGVDGA 327 (457)
T ss_pred EECch--hhhhhcccC-CCHHHHHHCC--CeEEEecCCc
Confidence 21111 110000011 1355666643 3688999964
No 129
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=34.59 E-value=66 Score=26.24 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCceeeeecCCCCCceEEecCc--CchHHHHHHHHHHHHHHHHHHHHcCC
Q 005411 568 FQEVLADLHSLNISVEQLHAEAGKGQFEIALGH--TVAAKAADNLIFTREVLRAVARKHGL 626 (698)
Q Consensus 568 ~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p--~~~l~aaD~l~~~r~~ik~vA~~~Gl 626 (698)
.+++.+.|+.+|+.++.. ..+.+++..++ .|....+| ++-+||+-|||
T Consensus 21 ~~~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 21 PEEIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 478999999999999865 67889998888 34555555 67888888885
No 130
>PRK09236 dihydroorotase; Reviewed
Probab=34.34 E-value=6.1e+02 Score=28.48 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=20.1
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 350 DTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 350 ~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+.+.++.+++.+ +-+.+..|++++|+++
T Consensus 341 ~~v~~~~~~~~~----~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 341 ELVHEGKLSLEK----VVEKTSHAPAILFDIK 368 (444)
T ss_pred HHHHhcCCCHHH----HHHHHHHhHHHhcCCC
Confidence 456667788754 5556778888999984
No 131
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=33.48 E-value=1.2e+02 Score=25.18 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFm 631 (698)
.-++.++...|.+.|+.|.....-.-.|+|-..+.-..+ .+..-..++.++.+|++.|+.++.+
T Consensus 12 ~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 12 PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 368899999999999999988888788888665555433 1355678888999999999987653
No 132
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=33.37 E-value=4.6e+02 Score=28.38 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCC
Q 005411 215 IFISSLEVAQFLDLPLQIHTGF 236 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~ 236 (698)
.+..+++.|.++|+|+.+|.+.
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e 219 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEE 219 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 4566788999999999999974
No 133
>PRK14085 imidazolonepropionase; Provisional
Probab=33.27 E-value=5e+02 Score=28.42 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCC-CCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 211 LIDYIFISSLEVAQFLDLPLQIHTGF-GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 211 l~d~~~~~~~e~a~e~glpvq~H~G~-G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
+.+..+..+++.+.++|+++.+|..- ++ ...+..+++ +.- ..+.|+.+.-.+++..++..- +.
T Consensus 204 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~---------~~~v~~~~~---~g~--~~i~H~~~l~~~~~~~la~~g--v~ 267 (382)
T PRK14085 204 FDEDQSRRVLTAGRAAGLGLRVHGNQLGP---------GPGVRLAVE---LGA--ASVDHCTYLTDADVDALAGSG--TV 267 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeCcccC---------ChHHHHHHH---cCC--CcHHHhCCCCHHHHHHHHHcC--CE
Confidence 34455667789999999999999852 11 011333333 211 125577554434444444322 22
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~I 369 (698)
.-.....+.....++ .-++++++.+ =++.+|||+.++. .+.. .....+ ...+....++..+ ..+ .
T Consensus 268 ~~~~P~~~~~~~~~~-~~~~~l~~aG--v~v~lgsD~~~~~--~~~~--~~~~~~----~~~~~~~~l~~~~---al~-~ 332 (382)
T PRK14085 268 ATLLPGAEFSTRQPY-PDARRLLDAG--VTVALASDCNPGS--SYTS--SMPFCV----ALAVRQMGMTPAE---AVW-A 332 (382)
T ss_pred EEECcHHHHhcCCCC-chHHHHHHCC--CcEEEEeCCCCCC--ChHH--HHHHHH----HHHHHhcCCCHHH---HHH-H
Confidence 211111100000111 2466666654 4788999963211 1111 111111 1122234566543 344 4
Q ss_pred HHHHHHHHhcCC
Q 005411 370 FALNAAQFYKIN 381 (698)
Q Consensus 370 l~~NA~rly~l~ 381 (698)
.-.|++++++++
T Consensus 333 aT~~~A~~lg~~ 344 (382)
T PRK14085 333 ATAGGARALRRD 344 (382)
T ss_pred HHHHHHHHcCCC
Confidence 557788888885
No 134
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=33.24 E-value=4e+02 Score=29.66 Aligned_cols=99 Identities=25% Similarity=0.256 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCC---C-CCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHh------C
Q 005411 216 FISSLEVAQFLDLPLQIHTGFGDKDLD---L-RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYV------Y 285 (698)
Q Consensus 216 ~~~~~e~a~e~glpvq~H~G~G~~~~~---~-~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~------~ 285 (698)
+..+.+++.++|+|+++|..-...... . ....| ++.+.+.+..- -+.++.|+-+....+...++.. +
T Consensus 200 ~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~--~~~~~~~g~l~-~~~~~~H~~~~~~~e~~~l~~~g~~v~~c 276 (421)
T COG0402 200 LESLDELARKYGLPVHIHLAETLDEVERVLEPYGARP--VERLDLLGLLG-SHTLLAHCVHLSEEELELLAESGASVVHC 276 (421)
T ss_pred HHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCH--HHHHHHcCCCC-CCeEEEEeccCCHHHHHHHhhCCCeEEEC
Confidence 344466777999999999987532110 0 11222 22222222332 5689999966555665555522 2
Q ss_pred C--eeeeecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCCCCc
Q 005411 286 P--QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASP 330 (698)
Q Consensus 286 p--nVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (698)
| |.++..+ .+| +.++++.+ =++..|||+...-
T Consensus 277 P~sN~~L~sG-~~p----------~~~~~~~g--v~v~~gTD~~~~~ 310 (421)
T COG0402 277 PRSNLKLGSG-IAP----------VRRLLERG--VNVALGTDGAASN 310 (421)
T ss_pred cchhccccCC-CCC----------HHHHHHcC--CCEEEecCCcccc
Confidence 2 6666655 332 23334434 5788999975543
No 135
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.20 E-value=6.3e+02 Score=28.37 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=63.7
Q ss_pred HHHHHHHhhCCCc-EEEecCCCCCCCCCC--CCCc-cchHHHHhhcCCCCcEEEEecCCC-c-----chHHHHHHHHhC-
Q 005411 217 ISSLEVAQFLDLP-LQIHTGFGDKDLDLR--LSNP-LHLRAILEDKRFSKCRFVLLHASY-P-----FSKEASYLAYVY- 285 (698)
Q Consensus 217 ~~~~e~a~e~glp-vq~H~G~G~~~~~~~--~~~p-~~L~~l~~~~~~P~~~~vllH~g~-p-----~~~e~~~la~~~- 285 (698)
..-++.|+++|.+ |.+|.|......... +..- ..|..++. +-.+++|++=+++. . ...++..+....
T Consensus 221 ~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la--~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~v~ 298 (413)
T PTZ00372 221 LDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHE--ETKSVIIVLENTAGQKNSVGSKFEDLRDIIALVE 298 (413)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh--CcCCCEEEEecCCCCCCcccCCHHHHHHHHHhcC
Confidence 3446889999997 899999842110000 0000 13444544 34468888877532 1 234555666543
Q ss_pred --C--eeeeecccccC---cc-cHHHHHHHHHHHHhhCCCCcE--EEecCCC
Q 005411 286 --P--QVYLDFGLAIP---KL-SVQGMISSIKELLELAPTKKV--MFSTDAY 327 (698)
Q Consensus 286 --p--nVy~d~s~~~~---~~-~~~g~~~~l~~~le~~~~~ki--lfgSD~~ 327 (698)
+ .|-+|++-.|. ++ ++.++..++.++-+..|.++| |-..|+.
T Consensus 299 ~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk 350 (413)
T PTZ00372 299 DKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSK 350 (413)
T ss_pred CcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCC
Confidence 3 36778887652 11 234666677776677777776 4788865
No 136
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=33.13 E-value=6.2e+02 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~ 236 (698)
.-.+..+++.|.++|+|+.+|.|-
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E 195 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGE 195 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCC
Confidence 345678899999999999999985
No 137
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=32.18 E-value=72 Score=35.08 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=35.6
Q ss_pred ecCCCCCceEEecCcCchHH-HHHHHHHHHHHHHHHHHHcCCeeee
Q 005411 586 HAEAGKGQFEIALGHTVAAK-AADNLIFTREVLRAVARKHGLLATF 630 (698)
Q Consensus 586 h~E~gpgQ~Ei~l~p~~~l~-aaD~l~~~r~~ik~vA~~~Gl~ATF 630 (698)
-=|-| ||||++..|.+-+. +|-..=.--.+||++|...|+...+
T Consensus 92 slEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 92 SLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred EeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 34667 99999999988655 5666667778999999999988764
No 138
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=31.51 E-value=32 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHhCCCceeeeecCCCCCceEEecCc
Q 005411 573 ADLHSLNISVEQLHAEAGKGQFEIALGH 600 (698)
Q Consensus 573 ~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p 600 (698)
+.-.++|=+||++--+ +||||||||.-
T Consensus 52 de~~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 52 DEDGAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred chhhcccCcceEEEEe-cCceEEEehhh
Confidence 4555677788988877 89999999854
No 139
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=30.71 E-value=79 Score=35.55 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCC--C-C-CCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD--L-R-LSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~--~-~-~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
-.+..+.++|.++|+||++|.+.+..... . . ...| ++.+.+. .+=+-++++.|+.+.-..+...|+..--+|-
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~--v~~l~~~-Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~ 281 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDI--VERLADF-GLLGEKTLAAHCIYLSDEEIDLLKETDTFVV 281 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCH--HHHHHhC-CCCCCCcEEEEeecCCHHHHHHHHhcCCeEE
Confidence 34555688999999999999987532111 0 0 1122 3333332 2335688999997655556666664432322
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
..... +.....|. .-+.++++.+. ++-.|||+.
T Consensus 282 ~~P~s--n~~l~~g~-~p~~~~~~~Gv--~v~lGtD~~ 314 (442)
T PRK07203 282 HNPES--NMGNAVGY-NPVLEMIKNGI--LLGLGTDGY 314 (442)
T ss_pred ECchh--hhhcccCC-CCHHHHHHCCC--eEEEcCCCC
Confidence 21110 00000011 12445555443 477999964
No 140
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=30.65 E-value=1.5e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHH--cChhhHHHHHHh
Q 005411 53 FKRNLKNIAELYGCDSSLQAVEEYRRA--AGLQSICSICFE 91 (698)
Q Consensus 53 ~~~~~~~l~~~fg~~~~~~~i~~~~~~--l~~~~~~r~ll~ 91 (698)
.+.++.-+++.-|+ -+-++|++.-.+ +++.+.+++||.
T Consensus 5 ~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 5 SRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45677889999999 788899999888 699999999996
No 141
>PRK06380 metal-dependent hydrolase; Provisional
Probab=29.72 E-value=5.8e+02 Score=28.19 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeee
Q 005411 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (698)
Q Consensus 215 ~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~ 290 (698)
.+..+.+.|.++|+++++|...+..... .....| ++.+..- ..-+.++++.|+.+.-..+...++..--.|-.
T Consensus 187 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--ie~~~~~-g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~ 263 (418)
T PRK06380 187 TYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERP--VEHLEKI-GFLNSKLIAAHCVWATYHEIKLLSKNGVKVSW 263 (418)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCeEEEEeecCCHHHHHHHHHcCCEEEE
Confidence 3455678889999999999986521110 001112 1111111 12245789999976544455555543222222
Q ss_pred ecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
....-. .....| ..-++++++.+ =++.+|||+.
T Consensus 264 ~P~sn~-~l~~~g-~~p~~~~~~~G--v~v~lGTD~~ 296 (418)
T PRK06380 264 NSVSNF-KLGTGG-SPPIPEMLDNG--INVTIGTDSN 296 (418)
T ss_pred CHHHHH-hhccCC-CCcHHHHHHCC--CeEEEcCCCC
Confidence 111100 000001 11355666654 3688999974
No 142
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=28.85 E-value=1.5e+02 Score=32.24 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHhhc---ccccceeeeeccccCCCCCCCCCHHHHHHHHHHHHh-----c--CCCCccCchh---hhh
Q 005411 147 TLDVFIETFLKQLRSAA---NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLR-----S--GKPVRITNKS---LID 213 (698)
Q Consensus 147 ~~~~~~~al~~~l~~~~---~~~vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~-----~--~~~~~~~~~~---l~d 213 (698)
+++++++++.+.++.+. +.-++.+.|.|-.+.+ +.+++.+.+..+.. . ..+..+...+ ...
T Consensus 105 ~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~------~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~ 178 (345)
T cd01321 105 DYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNF------NDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPL 178 (345)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCC------CHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCH
Confidence 57777777776665542 1124666677765444 23444433332221 0 0112222222 112
Q ss_pred HHHHHHHHHHhhCC--CcEEEecCCC
Q 005411 214 YIFISSLEVAQFLD--LPLQIHTGFG 237 (698)
Q Consensus 214 ~~~~~~~e~a~e~g--lpvq~H~G~G 237 (698)
..+.++++.|.+.| +++.+|.|-.
T Consensus 179 ~~f~~~f~~ar~~g~~l~~t~HAGE~ 204 (345)
T cd01321 179 LDFLPQLLWFPKQCAEIPFFFHAGET 204 (345)
T ss_pred HHHHHHHHHHHHhCCCCceEeecCCC
Confidence 34578899999999 9999999963
No 143
>PRK09356 imidazolonepropionase; Validated
Probab=28.37 E-value=6.1e+02 Score=27.79 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~ 236 (698)
+-.+..+++.|.++|+++.+|...
T Consensus 221 ~~~l~~~~~~A~~~g~~v~~H~~~ 244 (406)
T PRK09356 221 VEQSERVLEAAKALGLPVKIHAEQ 244 (406)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEec
Confidence 334556788999999999999963
No 144
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.37 E-value=55 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=30.8
Q ss_pred eEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeeccccCCCCCCcccccccccc
Q 005411 594 FEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW 650 (698)
Q Consensus 594 ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~ 650 (698)
-++.++|.++ .-|.+|.++|..+||.. ...|+|-+-|+.++
T Consensus 17 ~~~~fppm~~--------~~R~~vH~lA~~~~L~S--------~S~G~g~~R~v~v~ 57 (58)
T cd02646 17 DSLSFPPMDK--------HGRKTIHKLANCYNLKS--------KSRGKGKKRFVTVT 57 (58)
T ss_pred ceEecCCCCH--------HHHHHHHHHHHHcCCcc--------cccccCCceEEEEE
Confidence 4667777544 34789999999999984 45788887777664
No 145
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=1.1e+02 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q 005411 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFAL 372 (698)
Q Consensus 340 ~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~ 372 (698)
.++-+..+..+||++|.++.++|.+.+++++..
T Consensus 22 ~~ek~~klvDelVkkGeln~eEak~~vddl~~q 54 (108)
T COG3937 22 TAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQ 54 (108)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345567888999999999999999888888743
No 146
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.56 E-value=1.4e+02 Score=24.19 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhCCCceeeeecC--CCCCceEEecCcCchHHHH-HHHHHHHHHHHHHHHHcCCe
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAA-DNLIFTREVLRAVARKHGLL 627 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E--~gpgQ~Ei~l~p~~~l~aa-D~l~~~r~~ik~vA~~~Gl~ 627 (698)
.-++.+|.+.|.+.|+.|..++.- ...+.|.+.+.-.-+ +. -+.-.+++.+..+|.+.|+.
T Consensus 10 ~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 10 PGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 358899999999999999999876 455666665443322 11 13556788888899887753
No 147
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.55 E-value=1.6e+02 Score=22.58 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCceeeeecCCC--CCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCe
Q 005411 566 PVFQEVLADLHSLNISVEQLHAEAG--KGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (698)
Q Consensus 566 ~~~~~i~~~l~~~GI~ve~~h~E~g--pgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ 627 (698)
-.+.++.+.|.+.|+.|.+++.... +|.-.+.+.-.+ ...+++.-+++|+.
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~ 63 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVE 63 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCce
Confidence 3577899999999999987654222 244444444433 23445555566764
No 148
>PRK09060 dihydroorotase; Validated
Probab=25.82 E-value=7.4e+02 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005411 348 LRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (698)
Q Consensus 348 l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (698)
+-..|.+|.+++.+ +-+.+..|.+|+|+|+
T Consensus 335 ~~~~v~~g~l~~~~----~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 335 MLDHVNAGRLSLER----FVDLTSAGPARIFGIA 364 (444)
T ss_pred HHHHHHcCCCCHHH----HHHHHhHhHHHHhCCC
Confidence 33457788898754 6678889999999993
No 149
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=25.39 E-value=82 Score=27.11 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCCceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeee
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLAT 629 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~AT 629 (698)
...+..+...+.+.|++++-+..|+--..--+.+-+. ||.-+-||..+|++++.++.++-
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIe 84 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIE 84 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEE
Confidence 5677888888999999999999999877777777776 88889999999999999998764
No 150
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=24.66 E-value=1.9e+02 Score=28.83 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhCCCceeeeecCCCCC----------ceEEecCcCchHHHHHHHHHHHHHHHHHHHHcCCeeeecccc
Q 005411 565 SPVFQEVLADLHSLNISVEQLHAEAGKG----------QFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKF 634 (698)
Q Consensus 565 ~~~~~~i~~~l~~~GI~ve~~h~E~gpg----------Q~Ei~l~p~~~l~aaD~l~~~r~~ik~vA~~~Gl~ATFmpKP 634 (698)
--++.++.+.|.+.||.|+.+..+..+. ++|+.++..-- +-.+|..+.++|.+.++.+++-|.=
T Consensus 106 PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l~~eL~vd~~l~~~~ 179 (190)
T PRK11589 106 PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKALCTELNAQGSINVVN 179 (190)
T ss_pred CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHHHHHhCceEEEEEee
Confidence 4689999999999999999999997664 45566665432 3457888999999999999987763
No 151
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=4.6e+02 Score=28.79 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred ccchHHHHhhcCCCCcEEEEecCCC--------cchHHHHHHHHhCCe-eeeeccccc---C-cccHHHHHHHHHHHHhh
Q 005411 248 PLHLRAILEDKRFSKCRFVLLHASY--------PFSKEASYLAYVYPQ-VYLDFGLAI---P-KLSVQGMISSIKELLEL 314 (698)
Q Consensus 248 p~~L~~l~~~~~~P~~~~vllH~g~--------p~~~e~~~la~~~pn-Vy~d~s~~~---~-~~~~~g~~~~l~~~le~ 314 (698)
+..+.++++ --+.++|+-|.+- +--++...+.+.... |.+.+..-| + ..........+..+.+.
T Consensus 255 ~atm~~aL~---vS~APVIFSHSsA~~vcns~rNVPDdVL~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~V 331 (419)
T KOG4127|consen 255 DATMRDALE---VSRAPVIFSHSSAYSVCNSSRNVPDDVLQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAV 331 (419)
T ss_pred HHHHHHHHH---hhcCceEeecccHHHHhcCccCCcHHHHHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHh
Confidence 334455555 5678899999841 001233344333331 222221111 1 11123445577788889
Q ss_pred CCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005411 315 APTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (698)
Q Consensus 315 ~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (698)
+|.+.|=+|.|.-+.|.. .-+-+-.-. --.++++..+++.+. + |.+. ++++|-.|+|+-
T Consensus 332 aG~~hIGlGg~yDGi~~~-PkGLEDVSk-YP~LiaeLl~r~~~~-~---E~~~-l~g~N~LRV~~~ 390 (419)
T KOG4127|consen 332 AGIDHIGLGGDYDGIPRV-PKGLEDVSK-YPDLIAELLERGWWE-E---ELIG-LAGGNLLRVFRQ 390 (419)
T ss_pred hccceeeccCCcCCcCCC-Ccchhhhhh-hHHHHHHHHhcCCcH-H---HHHH-HhcchHHHHHHH
Confidence 998888899984443321 001110000 012355556666553 3 3344 999999999974
No 152
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=24.13 E-value=9e+02 Score=27.26 Aligned_cols=162 Identities=16% Similarity=0.075 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCC-----------CCCCCC-CCCcc--------chHHHHhhcCCCCcEEEEecC
Q 005411 211 LIDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDLR-LSNPL--------HLRAILEDKRFSKCRFVLLHA 270 (698)
Q Consensus 211 l~d~~~~~~~e~a~e~glpvq~H~G~G~-----------~~~~~~-~~~p~--------~L~~l~~~~~~P~~~~vllH~ 270 (698)
+..-.+...++.+.+.|.++.+|.--.+ .+..+. ...|. ..-.+++ .-+.++.++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~---~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELAR---ATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHH---HhCCcEEEEEc
Confidence 4444556667888899999999985421 111111 12221 1122333 44589999999
Q ss_pred CCcchHHHHHHHHhC-CeeeeecccccC---------------cccH---HHHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005411 271 SYPFSKEASYLAYVY-PQVYLDFGLAIP---------------KLSV---QGMISSIKELLELAPTKKVMFSTDAYASPE 331 (698)
Q Consensus 271 g~p~~~e~~~la~~~-pnVy~d~s~~~~---------------~~~~---~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (698)
+....-++..-++.- .+|.++++.-.- ..+| ..-+..|.+.+..+.++ +.+||--++..
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID--~iasDHaPht~ 309 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVID--VIASDHAPHTL 309 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCc--EEEcCCCCCCH
Confidence 876554444444333 355555543211 0111 11223444444433222 25777211110
Q ss_pred c--------hhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005411 332 T--------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (698)
Q Consensus 332 ~--------~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (698)
- .+.+.-.+...+--.+. +|.+|.+|+.+ .-+.+..|.+|+|+|..
T Consensus 310 eeK~~~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~----~v~~~S~nPA~ifgl~~ 363 (430)
T COG0044 310 EEKRLPFEEAPSGIPGLETALPLLLT-LVKKGRLSLER----LVELLSTNPARIFGLPP 363 (430)
T ss_pred HHhccchhhCCCCCccHHHHHHHHHH-HHHcCCcCHHH----HHHHHhhCHHHHhCCCC
Confidence 0 01111112233444455 88999999864 66778899999999965
No 153
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=23.40 E-value=1.1e+02 Score=31.73 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=49.1
Q ss_pred eeeeeeeeEEEEEeecccCCCCCceeCCCCCcccCccccCchHHHHHHHHHHHhCCCceeeeecCCCCCce---EEecCc
Q 005411 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQF---EIALGH 600 (698)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~GI~ve~~h~E~gpgQ~---Ei~l~p 600 (698)
++++|-..||.|.+. +|. ...|. +.|+...+ ..|.+--.+..+. ++| |+--.|
T Consensus 2 ~~~lGaDpEFmL~~~---~g~-~~v~A--S~f~~r~G----------------~vGcD~~~~~~~~--~~~PlaElRP~P 57 (261)
T PF14395_consen 2 DVLLGADPEFMLRNP---NGK-RMVPA--SRFFPRDG----------------PVGCDARRLRGRR--GIYPLAELRPAP 57 (261)
T ss_pred cccccCChHHHeecC---CCC-eEeeh--hHhcccCC----------------ccCccceeecCcc--ccccceecCCCC
Confidence 478899999999976 221 12222 12222111 1333333333333 333 333344
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHcCCe--eeeccccCCCCCCcccccccccc
Q 005411 601 -TVAAKAADNLIFTREVLRAVARKHGLL--ATFVPKFALDDIGSGSHVHLSLW 650 (698)
Q Consensus 601 -~~~l~aaD~l~~~r~~ik~vA~~~Gl~--ATFmpKP~~~~~GsG~H~H~Sl~ 650 (698)
.+|.+-.+++..+.....+.+...++. |-=||.+ +. --|.|||+|-.
T Consensus 58 ~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~--gf-p~GGHiHfsgv 107 (261)
T PF14395_consen 58 SPDPAELFENIRRALREAARRIPDRSLEWLAGSMPFP--GF-PLGGHIHFSGV 107 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCC--CC-CcCCeEEecCC
Confidence 245666666655444444444444432 3335554 33 36799999743
No 154
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.85 E-value=1.5e+02 Score=31.93 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=48.5
Q ss_pred cCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecC--CCcch------HH
Q 005411 206 ITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFS------KE 277 (698)
Q Consensus 206 ~~~~~l~d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~--g~p~~------~e 277 (698)
+...+++++ |+++..++.+.||.+-||... ...-.---.++++ +-+-.++++|| +||-- ..
T Consensus 129 IaS~E~~~~---plik~iA~~~kPiIlSTGma~------~~ei~~av~~~r~--~g~~~i~LLhC~s~YPap~ed~NL~~ 197 (347)
T COG2089 129 IASGEINDL---PLIKYIAKKGKPIILSTGMAT------IEEIEEAVAILRE--NGNPDIALLHCTSAYPAPFEDVNLKA 197 (347)
T ss_pred ecCccccCh---HHHHHHHhcCCCEEEEccccc------HHHHHHHHHHHHh--cCCCCeEEEEecCCCCCCHHHhhHHH
Confidence 334444443 567778899999999999742 0011112234553 43447999999 57643 23
Q ss_pred HHHHHHhCCeeeeecccc
Q 005411 278 ASYLAYVYPQVYLDFGLA 295 (698)
Q Consensus 278 ~~~la~~~pnVy~d~s~~ 295 (698)
+..|+..| |+-+++|--
T Consensus 198 i~~l~~~F-n~~vGlSDH 214 (347)
T COG2089 198 IPKLAEAF-NAIVGLSDH 214 (347)
T ss_pred HHHHHHHh-CCccccccC
Confidence 45677888 888888753
No 155
>PRK09230 cytosine deaminase; Provisional
Probab=21.66 E-value=7.4e+02 Score=27.69 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCc-------chHHHHHHHHhC
Q 005411 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-------FSKEASYLAYVY 285 (698)
Q Consensus 213 d~~~~~~~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p-------~~~e~~~la~~~ 285 (698)
.-.+..+++.|.++|+++.+|.+-........ ...+.++++...+ +-++++.|+.+- ..+++..|+..-
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~---~~~~~~~~~~~gl-~~~v~~~H~~~l~~~~~~~~~~~~~~La~~g 269 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRF---VETVAALAHREGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSG 269 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHH---HHHHHHHHHHhCC-CCCEEEEecCchhcCCHHHHHHHHHHHHHcC
Confidence 34566788999999999999998643211100 0112233332233 457999999654 123444555332
Q ss_pred ------C--eeeeecccccCccc-HHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 286 ------P--QVYLDFGLAIPKLS-VQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 286 ------p--nVy~d~s~~~~~~~-~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
| |.|+. ......+ ..|. .-++++++.+ =+|..|||+.
T Consensus 270 v~vv~cP~sn~~l~--~~~~~~p~~~g~-~pi~~l~~aG--v~V~lGTD~~ 315 (426)
T PRK09230 270 INFVANPLVNIHLQ--GRFDTYPKRRGI-TRVKEMLEAG--INVCFGHDDV 315 (426)
T ss_pred CeEEECcchhhhhc--CCCCCCCCCCCC-cCHHHHHHCC--CeEEEecCCC
Confidence 1 33332 1111110 0121 1355666644 3788999964
No 156
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=21.64 E-value=6.2e+02 Score=29.57 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeeeeecccccCcc
Q 005411 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKL 299 (698)
Q Consensus 220 ~e~a~e~glpvq~H~G~G~~~~~~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy~d~s~~~~~~ 299 (698)
++.+.+.|.++..|... - ....|..+++ .-+...|.+... .|+ +.+..-.+|+++-.-..
T Consensus 168 i~~a~~~g~~I~gHap~-l--------~~~eL~~~~~------aGi~~dHe~~s~-~ea--~e~~~~Gm~~~ir~gs~-- 227 (552)
T TIGR01178 168 INSARKRNKVIDGHCPG-L--------SGKLLNKYIS------AGISNDHESTSI-EEA--REKLRLGMKLMIREGSA-- 227 (552)
T ss_pred HHHHHhCCCEEEecCCC-C--------CHHHHHHHHH------cCCCCCcCcCCH-HHH--HHHHHCCCEEEEeCCcc--
Confidence 45678999999999741 1 1123444443 334456765432 232 22233345554322110
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhc
Q 005411 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (698)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~R~~l~~vl~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~ 379 (698)
++ .+ ..+..++......+++|+||.+ .|... ...- .+...+...++.| ++..+ +=...-.|+++.|+
T Consensus 228 ~~-n~-~~~~~~~~~~~~~~~~l~TD~~-~~~~~-~~~g----~l~~~v~~ai~~g-~~~~~----Al~maT~npA~~lg 294 (552)
T TIGR01178 228 AK-NL-EALHPLINEKNCRSLMLCTDDR-HVNDI-LNEG----HINHIVRRAIEHG-VDPFD----ALQMASINPAEHFG 294 (552)
T ss_pred cc-CH-HHHHHHHhhcCCceEEEEeCCC-ChhHH-HhcC----CHHHHHHHHHHcC-CCHHH----HHHHHHHHHHHHcC
Confidence 00 11 1222222223558899999965 23211 1100 1222333334333 56543 55566789999999
Q ss_pred CC
Q 005411 380 IN 381 (698)
Q Consensus 380 l~ 381 (698)
++
T Consensus 295 l~ 296 (552)
T TIGR01178 295 ID 296 (552)
T ss_pred CC
Confidence 96
No 157
>PRK05985 cytosine deaminase; Provisional
Probab=21.03 E-value=9.9e+02 Score=26.09 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCC
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFG 237 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G 237 (698)
..+..+++.|.++|+|+.+|+...
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCC
Confidence 455667899999999999998653
No 158
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=20.58 E-value=9.4e+02 Score=27.03 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCcEEEEecCCCcchHHHHHHHHhCCeee
Q 005411 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (698)
Q Consensus 214 ~~~~~~~e~a~e~glpvq~H~G~G~~~~~----~~~~~p~~L~~l~~~~~~P~~~~vllH~g~p~~~e~~~la~~~pnVy 289 (698)
-.+..+.+.+ ++|+|+++|.+-...... .....| ++.+.+. ..-+-++++.|+.+.-..+...++..--.|-
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~ 291 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARP--VEWLLDH-APVDARWCLVHATHLTDAETARLARSGAVAG 291 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCeEEEeeccCCHHHHHHHHHcCCeEE
Confidence 3455567888 999999999975321110 011122 2323332 2335678999997765556666664432222
Q ss_pred eecccccCcccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005411 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (698)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (698)
.-... +.....|. .-++++++.+ =++-+|||+.
T Consensus 292 ~~P~s--n~~lg~g~-~p~~~l~~~G--v~v~lGtD~~ 324 (456)
T PRK09229 292 LCPTT--EANLGDGI-FPAVDYLAAG--GRFGIGSDSH 324 (456)
T ss_pred ECchh--hhhhcCCC-CCHHHHHHCC--CeEEEecCCC
Confidence 21111 10000011 1245566644 3677999964
Done!