RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005411
(698 letters)
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 326 bits (837), Expect = e-106
Identities = 109/389 (28%), Positives = 172/389 (44%), Gaps = 23/389 (5%)
Query: 4 EELREVVENIELVDGHAHNIVSLD---SSFPFIQSFSEATGP-ALSYAPYSLSFKRNLKN 59
++L E V+ + L+D H H ++ Q +EA L+ L++ L
Sbjct: 3 DDLSEFVDQVPLLDHHCHFLIDGKVPNRDDRLAQVSTEADKDYPLADTKNRLAYHGFLA- 61
Query: 60 IAELYGCDSSLQAVEEYRRAAGLQSICSICFEAANISAVLIDDGLKLDKK-HGLDWHKSL 118
+A+ + D+ G + F + +LID G D LD L
Sbjct: 62 LAKEFALDA--NNPLAAMNDPGYATYNHRIFGHFHFKELLIDTGFVPDDPILDLDQTAEL 119
Query: 119 VPF-VGRILRIERLAEEILDQASPDGSIWTLDVFIETFLKQLRSA-ANKIVGLKSIAAYR 176
V V I R+E AE+ + + + + F ++ A A+ VG KSIAAYR
Sbjct: 120 VGIPVKAIYRLETHAEDFMLEHDN------FAAWWQAFSNDVKQAKAHGFVGFKSIAAYR 173
Query: 177 SGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF 236
GL + P V +A G SG+ R+T+K LIDY+ D+PLQ H G+
Sbjct: 174 VGLHLEP-VNVIEAAAGFDTWKHSGEK-RLTSKPLIDYMLYHVAPFIIAQDMPLQFHVGY 231
Query: 237 GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAI 296
GD D D+ L NPL +R L+ + VLLH YP+ +EA YLA V+P +Y D L +
Sbjct: 232 GDADTDMYLGNPLLMRDYLKAFTKKGLKVVLLHC-YPYHREAGYLASVFPNLYFDISL-L 289
Query: 297 PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDED 356
L G E +ELAP +++F++DA PE Y L A++ ++ + +
Sbjct: 290 DNLGPSGASRVFNEAVELAPYTRILFASDASTYPEMYGLAARQFKQALVAHFNQ---LPF 346
Query: 357 LSVGEAIEVAKDIFALNAAQFYKINLGVK 385
+ + + I +A+ Y ++
Sbjct: 347 VDLAQKKAWINAICWQTSAKLYHQERELR 375
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 168 bits (428), Expect = 5e-46
Identities = 64/304 (21%), Positives = 98/304 (32%), Gaps = 41/304 (13%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E + +R DA+G R + +P + F ++ G DG +
Sbjct: 11 EHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYL--E-------------DGEVNA 55
Query: 465 GTGEI-----RLMPDLSTRWRIPWQKQEEMIM-ADMHLKPGEPWEYCPREALRKVSRLLK 518
G LMP+LST + D G PR R L+
Sbjct: 56 GAAGAAASDIVLMPELSTAAVAAAAAAATAAVICDG----GAAAAASPRYIARAALAQLQ 111
Query: 519 EE-FNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHS 577
L + F +F + V T + A + QE A +
Sbjct: 112 AAGAAAGLLSAFIADFCIFGVPE-------VINSKTISFPASTTAAAADQPQEAAA-GGA 163
Query: 578 LNISVEQLHAEAGKGQFEIA-LGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFAL 636
+ A G EI L A AADN R L+ VAR++ +A+ A
Sbjct: 164 AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAAAA 223
Query: 637 DDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPN- 695
G+GSH + G N F + + + G K++AG+L ++ A A
Sbjct: 224 AAAGAGSHSIWDVGAAGTNAFAGASGA---RATLTGAKWLAGLLAAAAAAAAAAAAAAAA 280
Query: 696 --RL 697
Sbjct: 281 AAAA 284
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 168 bits (429), Expect = 5e-46
Identities = 85/304 (27%), Positives = 141/304 (46%), Gaps = 30/304 (9%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V IR+ + D G + +PV + + + F DG+++
Sbjct: 15 EENVKYIRLQFTDILGTIKNVEIPVSQLGKALDN---KVMF-------------DGSSIE 58
Query: 465 GTGEI-----RLMPDLSTRWRIPWQKQEEMIM---ADMHLKPGEPWEYCPREALRKVSRL 516
G I L PDL+T PW ++ + D++ G P+E PR L+++ +
Sbjct: 59 GFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIYNPDGTPFEGDPRNNLKRILKE 118
Query: 517 LKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLH 576
+++ N G E EF+L K +G+ D Y A D ++++ +L
Sbjct: 119 MEDLGFSDFNLGPEPEFFLFKLD-EKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELE 177
Query: 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFAL 636
+ +E H E GQ EI + A ++ D++ + V++ +ARKHGL ATF+PK
Sbjct: 178 EMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLF 237
Query: 637 DDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPN- 695
GSG H +LSL++NG N F D ++ +S + F+AG++ H +S A T P N
Sbjct: 238 GVNGSGMHCNLSLFKNGVNAFF--DENADLQLSETAKHFIAGIVKHATSFTAVTNPTVNS 295
Query: 696 --RL 697
RL
Sbjct: 296 YKRL 299
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 146 bits (371), Expect = 7e-38
Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 57/333 (17%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
+ V + V + D G + +P F+ V G+ DG+++
Sbjct: 23 DEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAF---------------DGSSIR 67
Query: 465 GTGEI-----RLMPDLSTRWRIPWQKQEEMIMADMHLKP--GEPWEYCPREALRKVSRLL 517
G I L+PD T P++ + + + P EP+ PR RK L
Sbjct: 68 GFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYL 127
Query: 518 KEE-FNLVLNAGFEIEFYLLKSV--LREGKEEWVPIDFT--PYCSTAAYDA--------- 563
G E EFY+ SV + +D + + AA +A
Sbjct: 128 ISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYK 187
Query: 564 ---------VSPV--FQ----EVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVAAKAA 607
V+P + ++L +L + +E+ H E GQ EI AA
Sbjct: 188 VRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAA 247
Query: 608 DNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHG 667
D++ + +++ A ++G TF+PK D GSG H H SLW++G + G
Sbjct: 248 DDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDET--GYAG 305
Query: 668 MSSVGEKFMAGVLHHLSSILAFTAPVPN---RL 697
+S ++ G+LHH S+LAFT P N RL
Sbjct: 306 LSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRL 338
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 142 bits (361), Expect = 1e-36
Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 57/331 (17%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
+ ++ +I + ++D G + + ++ G+ DG+++
Sbjct: 14 DENIKIIDLKFIDTPGIWQHCSFYYDQLDENSFTEGIPF---------------DGSSIR 58
Query: 465 GTGEI-----RLMPDLSTRWRIPWQKQEEMIM-ADMHLKP--GEPWEYCPREALRKVSRL 516
G I ++PD +T P+ K+ + M + +P GE + PR K +
Sbjct: 59 GWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIK-EPRTGEWYNRDPRTIAAKAAEY 117
Query: 517 LKEE-FNLVLNAGFEIEFYLLKSV--LREGKEEWVPIDFTP------------------- 554
L+ + G E EF+L + + + D
Sbjct: 118 LRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGGNLGYKPG 177
Query: 555 ----YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVAAKAADN 609
Y A D + E+L + + + +E+ H E A GQ E+ + +ADN
Sbjct: 178 YKQGYFPVAPTDTAQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADN 237
Query: 610 LIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 669
L+ + V++ VA+K+G TF+PK +D GSG HVH SLW++G+ +F G S
Sbjct: 238 LMIYKYVIKNVAKKYGKTVTFMPKPIFNDNGSGMHVHQSLWKDGQPLF---AGDKYAGFS 294
Query: 670 SVGEKFMAGVLHHLSSILAFTAPVPN---RL 697
+G ++ G+L H ++LAFT P N RL
Sbjct: 295 QMGLWYIGGILKHAPALLAFTNPTTNSYKRL 325
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 141 bits (359), Expect = 2e-36
Identities = 83/331 (25%), Positives = 130/331 (39%), Gaps = 57/331 (17%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V + + + D G+ + +P + N + G DG+++
Sbjct: 11 EHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMF---------------DGSSIG 55
Query: 465 GTGEI-----RLMPDLSTRWRIPWQKQEEMIM-ADMHLKP--GEPWEYCPREALRKVSRL 516
G I LMPD ST P+ +I+ D+ +P + ++ PR ++
Sbjct: 56 GWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDIL-EPGTLQGYDRDPRSIAKRAEDY 114
Query: 517 LKEE-FNLVLNAGFEIEFYLLKSV--LREGKEEWVPIDFT--PYCSTAAYDA-------- 563
L+ + G E EF+L + V ID + S+ Y+
Sbjct: 115 LRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPG 174
Query: 564 -------VSPV--FQ----EVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVAAKAADN 609
V PV Q E+ + + + VE H E A GQ E+A K AD
Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADE 234
Query: 610 LIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMS 669
+ + V+ VA + G ATF+PK D GSG H H+SL +NG N+F G+S
Sbjct: 235 IQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLF---SGDKYAGLS 291
Query: 670 SVGEKFMAGVLHHLSSILAFTAPVPN---RL 697
++ GV+ H +I A P N RL
Sbjct: 292 EQALYYIGGVIKHAKAINALANPTTNSYKRL 322
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 117 bits (295), Expect = 2e-27
Identities = 39/248 (15%), Positives = 75/248 (30%), Gaps = 28/248 (11%)
Query: 469 IRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLK----EEFNLV 524
+ D + + L P + + + + +
Sbjct: 155 PAFVVDTTLCIPTIFISYTGEA-----LDYKTPLLKALAAVDKAATEVCQLFDKNITRVF 209
Query: 525 LNAGFEIEFYLLKSVLREGKEEWV-------------PIDFTPYCSTAAYDAVSPVFQEV 571
N G+E E++L+ + L + + + + V+ +E+
Sbjct: 210 TNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYFGSIPPRVTAFMKEL 269
Query: 572 LADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631
+ H L I V+ H E QFE+A A D+ ++++ +ARKH F
Sbjct: 270 EIECHKLGIPVKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHHFAVLFH 329
Query: 632 PKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMA----GVLHHLSSIL 687
K GSG H + SL + + + F+ V + +
Sbjct: 330 EKPYNGVNGSGKHNNWSLCTDTGINLF--APGKNPKGNMLFLTFLVNVLMMVHKNQDLLR 387
Query: 688 AFTAPVPN 695
A N
Sbjct: 388 ASIMSAGN 395
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 104 bits (261), Expect = 2e-24
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 22/244 (9%)
Query: 471 LMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFE 530
L P + ++M D + GEP R + K+ + G E
Sbjct: 72 LYPQAIFKDPFRRGN-NILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAE-EPWYGIE 129
Query: 531 IEFYLLKSVLREGKEEWVPIDFTP------YCSTAAYDAVS-PVFQEVLADLHSLNISVE 583
E+ LL+ PI P YC A + + I++
Sbjct: 130 QEYTLLQKD--TNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINIS 187
Query: 584 QLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDI-GSG 642
++ E GQ+E +G +V + D + R +L + G++ TF PK D G+G
Sbjct: 188 GINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAG 247
Query: 643 SHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGV----------LHHLSSILAFTAP 692
+H + S + ++ + ++ +A H + I F+
Sbjct: 248 AHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWG 307
Query: 693 VPNR 696
V NR
Sbjct: 308 VANR 311
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 100 bits (251), Expect = 4e-23
Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 62/338 (18%)
Query: 389 SKDDMHQIYLKKSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM 448
K + Q YL+ + + +W+D +G R + +K+ + + F
Sbjct: 7 EKTQILQKYLELD---QRGRIIAEYVWIDGTGNLRSKGRTLKKRITSIDQLP-EWNF--- 59
Query: 449 GMTSAVDGP----ADGTNLSGTGEIRLMPDLSTRWRIPWQKQEEMI-MADMHLKPGEPWE 503
DG A G + S +I L P P+++ + ++ +A + G P +
Sbjct: 60 ------DGSSTNQAPGHD-S---DIYLKPVAYYPD--PFRRGDNIVVLAACYNNDGTPNK 107
Query: 504 YCPREALRKVSRLLKEE---FNLVLNAGFEIEFYLLKSVLRE--GKEEWVPIDFTPYCST 558
+ R K+ K+E F G E E+ L + P PY
Sbjct: 108 FNHRHEAAKLFAAHKDEEIWF------GLEQEYTLFDMYDDVYGWPKGGYPAPQGPYYCG 161
Query: 559 AAYDAVS--PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREV 616
V + + + + ++AE Q+E +G D L R
Sbjct: 162 VGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYF 221
Query: 617 LRAVARKHGLLATFVPK-FALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKF 675
L VA + G+ +F PK D G+G H ++S + + + EK
Sbjct: 222 LHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKEMRQP-------GGTKYIEQAIEKL 274
Query: 676 MAGVLHHL-----------------SSILAFTAPVPNR 696
H+ +S+ AF++ V NR
Sbjct: 275 SKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANR 312
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
GENO structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 97.1 bits (242), Expect = 7e-22
Identities = 60/315 (19%), Positives = 107/315 (33%), Gaps = 58/315 (18%)
Query: 414 IWVDASGQH-RCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDG----PADGTNLSGTGE 468
IW+D +G+ RC+ + V + F DG ++G+N S +
Sbjct: 50 IWIDGTGEGLRCKTRTLDSEPKCVEELPE-WNF---------DGSSTLQSEGSN-S---D 95
Query: 469 IRLMPDLSTRWRIPWQKQEEM-IMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNA 527
+ L+P R P++K ++ ++ P E R +++ ++ +
Sbjct: 96 MYLVPAAMFRD--PFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQHP---WF 150
Query: 528 GFEIEFYLLKSVLRE--GKEEWVPIDFTPYCSTAAYDAVS--PVFQEVLADLHSLNISVE 583
G E E+ L+ + P PY D + + + +
Sbjct: 151 GMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIA 210
Query: 584 QLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDI-GSG 642
+AE Q+E +G D+L R +L V G++ATF PK + G+G
Sbjct: 211 GTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAG 270
Query: 643 SHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHL------------------- 683
H + S E + + EK +H+
Sbjct: 271 CHTNFSTKAMREE-------NGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFH 323
Query: 684 --SSILAFTAPVPNR 696
S+I F+A V NR
Sbjct: 324 ETSNINDFSAGVANR 338
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 74.1 bits (182), Expect = 1e-14
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 24/161 (14%)
Query: 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEAS 279
+ +P+ + TG G+ D+ +NP H+ +L F V H ++P+ +E
Sbjct: 144 YAFCEDNGIPVIMMTG-GNAGPDITYTNPEHIDRVL--GDFPDLTVVSSHGNWPWVQEII 200
Query: 280 YLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKR 339
++A+ P +YL + + L + + +++F T P K
Sbjct: 201 HVAFRRPNLYLSPDMYLYNLP---GHADFIQAANSFLADRMLFGTA---YP---MCPLKE 251
Query: 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380
E I + + I NA +
Sbjct: 252 YTE----WFLTLPIKP--------DAMEKILHGNAERLLAQ 280
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 67.5 bits (165), Expect = 2e-12
Identities = 31/205 (15%), Positives = 61/205 (29%), Gaps = 39/205 (19%)
Query: 181 INPHVTKKDAEEGLAEDLRSG--KPVRI-TNKSLIDYIFISSLEVAQ-FLDLPLQIHTGF 236
+ +++ D + E++ + + T S + + LP+ IH
Sbjct: 94 VPVGLSENDTNSYIEENIVNNKLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWIHAFN 153
Query: 237 GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAI 296
L L + + + K F K +L H A LA +YLD
Sbjct: 154 -----PLVLQDIKEIAELC--KAFPKVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAYF 206
Query: 297 PKLSVQGMISSIKELLELAPTKKVMFSTDA-YASPETYFLGAKRAREVVFSVLRDTCIDE 355
++ +I+ + K +F TD + + ++ D
Sbjct: 207 STFVLKIVINELPL--------KCIFGTDMPFGDLQLS-----------IEAIKKMSNDS 247
Query: 356 DLSVGEAIEVAKDIFALNAAQFYKI 380
VA + N ++ I
Sbjct: 248 --------YVANAVLGDNISRLLNI 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 66/393 (16%), Positives = 116/393 (29%), Gaps = 120/393 (30%)
Query: 3 FEELREVVENIELVDGHAHNIVSLDSSFPFIQSFSEATGPALSYAPYSLSFKRNLKNIAE 62
FEELR++ + + + + + LS L R + +
Sbjct: 170 FEELRDLYQ----------------TYHVLVGDLIKFSAETLS----ELI--RTTLDAEK 207
Query: 63 LY--GCDSSLQAVEEYRRAAGLQSICSICFEAANISAVLIDDGL-------KLDKKHGLD 113
++ G + L+ +E + S IS LI G+ K G
Sbjct: 208 VFTQGLN-ILEWLENPSNTPDKDYLLS-----IPISCPLI--GVIQLAHYVVTAKLLGFT 259
Query: 114 WHKSLVP-FVGRILRIERLAEEILDQASPDGSIWTLDVFIETFLKQLRSAANKI---VGL 169
L G + L + + W E+F +R A + +G+
Sbjct: 260 -PGELRSYLKGATGHSQGLVTAVAIAETDS---W------ESFFVSVRKAI-TVLFFIGV 308
Query: 170 KSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKP-----VR-ITNKSLIDYIFISSLEVA 223
+ AY + + P + + E G P + +T + + DY+ +
Sbjct: 309 RCYEAYPN-TSLPPSILEDSLENN------EGVPSPMLSISNLTQEQVQDYVN----KTN 357
Query: 224 QFLDLPLQIH------------TGFGDKDLDLRLSNPLHLRAI-----LEDKR--FS--K 262
L Q+ +G L N L LR L+ R FS K
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGP---PQSLYGLN-LTLRKAKAPSGLDQSRIPFSERK 413
Query: 263 CRFVL--LHASYPF-SKEASYLAYVYPQVYLDFG----------LAIPKLS------VQG 303
+F L + PF S L + D + IP ++
Sbjct: 414 LKFSNRFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 304 MISSIKE-LLELAPTKKVMFSTDAYASPETYFL 335
+ SI E +++ V + T+ L
Sbjct: 471 LSGSISERIVDCIIRLPVKW-ETTTQFKATHIL 502
Score = 52.0 bits (124), Expect = 6e-07
Identities = 95/529 (17%), Positives = 163/529 (30%), Gaps = 210/529 (39%)
Query: 189 DAEEGLAEDLRSGKPVRITNKSLIDYI-FISSL----EVAQFLDLPLQIHTGFGDKDLDL 243
+ EG A D P + K ++ ++SSL +V QF + T F + L+
Sbjct: 43 EPTEGFAADDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE- 97
Query: 244 RLSNPLH-LRAIL---EDKRFSKCRFVLLHASY---------PFSKEA-SYL-------- 281
N +H L A L D K + ++ +Y PF K++ S L
Sbjct: 98 --GNDIHALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 282 AYVYPQVYLDFGLAIPKLSVQGMISS-IKELLELAPTKKVMFSTDAYASPETY--FLGA- 337
A + FG QG +EL +L Y +TY +G
Sbjct: 154 AQLVAI----FG-------GQGNTDDYFEELRDL------------Y---QTYHVLVGDL 187
Query: 338 -KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLGVKDFASKDDMH-- 394
K + E + ++R T L+A + + L + ++
Sbjct: 188 IKFSAETLSELIRTT--------------------LDAEKVFTQGLNILEWLENPSNTPD 227
Query: 395 QIYLKKSDAFESDVS--LIRVIWVDASGQ--H---RCRV--VPVKRFNDIVTKYGVGLTF 445
+ YL +S LI VI Q H ++ + G T
Sbjct: 228 KDYLL-----SIPISCPLIGVI------QLAHYVVTAKLLGFTPGELRSYLK----GATG 272
Query: 446 ACMGMTSAVDGPADGTNLSGTGE---------IRLMPDLSTRWRIPWQKQEEM------- 489
G+ +AV A + + E I ++ + I + E
Sbjct: 273 HSQGLVTAV-AIA----ETDSWESFFVSVRKAITVL-----FF-IGVRCYEAYPNTSLPP 321
Query: 490 -IMADMHLKPGE--PWEYCPREALRKVSR--LLK--EEFNLVLNAGFEIEFYLLKSVLRE 542
I+ D L+ E P P ++ +++ + + N L AG ++E L+
Sbjct: 322 SILED-SLENNEGVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---- 373
Query: 543 GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLA----DLHSLNISVEQLHAEAGKGQFEIAL 598
+ V++ L+ LN+++ + A +G Q I
Sbjct: 374 ------AKNL------------------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-- 407
Query: 599 GHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHL 647
F+ L+ R L P F H HL
Sbjct: 408 ------------PFSERKLKFSNR---FLPVASP-F---------HSHL 431
Score = 40.4 bits (94), Expect = 0.003
Identities = 44/270 (16%), Positives = 79/270 (29%), Gaps = 82/270 (30%)
Query: 393 M-HQIYLKKSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFN--DIVTKYGVGLTFACMG 449
M +Y K S A + +W + + H F+ DIV V LT G
Sbjct: 1631 MGMDLY-KTSKAA-------QDVW-NRADNH---FKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 450 ----------MTSAVDGPADGTNLSGTGEIRLMPDLSTRWR-IPWQKQEEMIMADMHLKP 498
+ DG + ++ +++ ++ ++ ++ A +P
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKT----EKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 499 GEPWEYCPREALRKVS----RLLKEEFNLVLN---AG---------------FEIE--FY 534
AL + LK + + + AG IE
Sbjct: 1735 ----------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 535 LLKSVLREGK--EEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGK- 591
++ R G + VP D S A++P +L VE++ G
Sbjct: 1785 VVF--YR-GMTMQVAVPRDELG-RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 592 ----------GQFEIALGHTVAAKAADNLI 611
Q+ A G A N++
Sbjct: 1841 VEIVNYNVENQQYVAA-GDLRALDTVTNVL 1869
Score = 35.8 bits (82), Expect = 0.058
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 44/131 (33%)
Query: 523 LVLNAG-FEIEF------YLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADL 575
L L+ G E + + S L+E + +P P AA D +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP---EPTEGFAADDEPT---------- 55
Query: 576 HSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFA 635
+ +L +F LG+ + + +VL L F +
Sbjct: 56 -----TPAELVG-----KF---LGYVSSLVEPSKVGQFDQVLNLC------LTEFENCY- 95
Query: 636 LDDIGSGSHVH 646
L G+ +H
Sbjct: 96 L----EGNDIH 102
Score = 34.6 bits (79), Expect = 0.14
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 42/142 (29%)
Query: 517 LKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPID-------FTPYCSTAAYDAVSPVFQ 569
L+E+FN +L E F +E P F Y S+ + F
Sbjct: 33 LQEQFNKILPEPTE-GF--------AADDE--PTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 570 EVLA--------------DLHSLNISVEQLHAEAGKGQFEIA--LGHTVAAKAADNLIFT 613
+VL D+H+L +L E + + + + A+ F
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 614 RE----VLRAVARKH-GLLATF 630
++ + RAV + L+A F
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIF 160
Score = 30.8 bits (69), Expect = 2.2
Identities = 54/348 (15%), Positives = 105/348 (30%), Gaps = 131/348 (37%)
Query: 71 QAV----EEYRRAAGLQSICSICFEAA----------NISAVLIDDGLKLDKKHGLDWHK 116
Q + Y+ + Q + + A +I ++I++ + L
Sbjct: 1627 QEQGMGMDLYKTSKAAQDV----WNRADNHFKDTYGFSILDIVINNPVNL---------- 1672
Query: 117 SLVPFVG-RILRIERLAEEILDQASPDGSIWTLDVFIE--------TF------LKQLRS 161
+ F G + RI ++ + DG + T +F E TF L +
Sbjct: 1673 -TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 162 A--ANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFIS- 218
A + L AA+ L+ +GL D F
Sbjct: 1732 TQPA--LT-LMEKAAFED-LK----------SKGLIPA---------------DATFAGH 1762
Query: 219 SL-E------VAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS 271
SL E +A + + + L + + + R + + +
Sbjct: 1763 SLGEYAALASLADVMSI----------ESL-VEV---VFYRGM------------TMQVA 1796
Query: 272 YPFSKEA--SY-LAYVYP-QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327
P + +Y + + P +V F + V+ + L+E+ Y
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV----------NY 1846
Query: 328 -ASPETYFL-GAKRAREVVFSVLRDTC----ID-EDLSVGEAIEVAKD 368
+ Y G RA + V +VL + ID +L ++E +
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVL-NFIKLQKIDIIELQKSLSLEEVEG 1893
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein
structure initiative; 1.65A {Bacillus halodurans c-125}
PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A*
2q08_A* 2pnk_A*
Length = 437
Score = 52.4 bits (125), Expect = 3e-07
Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 17/186 (9%)
Query: 220 LEVAQFLDLPLQIHTG--------FGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS 271
L VA+ ++P + G GD + ++ + +L + +F++ S
Sbjct: 247 LPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLR--EYPNNKFLVTMLS 304
Query: 272 YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPE 331
E LA + + + FG + + + + +E+ T + +DA E
Sbjct: 305 RENQHELVVLARKFSNLMI-FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVL-E 362
Query: 332 TYFLGAKRAREVVFSVLRDTCID-----EDLSVGEAIEVAKDIFALNAAQFYKINLGVKD 386
++ ++ VL D D +++ E D+F+ N +F N V
Sbjct: 363 QLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVADLFSRNFWRFVGRNDHVTS 422
Query: 387 FASKDD 392
+
Sbjct: 423 VKVEQQ 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 58/322 (18%), Positives = 96/322 (29%), Gaps = 107/322 (33%)
Query: 94 NISAVLIDDGLKLDKKHGLDWHKSLVPFVGRILRIERLAEEILDQASP-----------D 142
+IS L D+ L L+ ++ R + L E+L +P D
Sbjct: 288 HISLDHHSMTLTPDEVKSL-----LLKYLD--CRPQDLPREVL-TTNPRRLSIIAESIRD 339
Query: 143 G----------SIWTLDVFIETFLKQLRSAANKIVGLKSIAAYRSGLEINPHV------- 185
G + L IE+ L L A + + ++ + I +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFD 398
Query: 186 TKKDAEEGLAEDLRSGKPVRITNKSLID------YIFISSL--EVAQFLDLPLQIHTGFG 237
K + L SL++ I I S+ E+ L+ +H
Sbjct: 399 VIKSDVMVVVNKLH--------KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 238 DK-------DLDLRLSNPL----------HLRAILEDKRFSKCRFVLL----------HA 270
D D D + L HL+ I +R + R V L H
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 271 SYPFSKEAS----------YLAYVYPQ---------VYLDFGLAIPKLSVQGMISSIKEL 311
S ++ S Y Y+ LDF +PK+ + S +L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDL 567
Query: 312 LELAPTKKVMFSTDAYASPETY 333
L +A +M +A E +
Sbjct: 568 LRIA----LMAEDEAIFE-EAH 584
Score = 47.5 bits (112), Expect = 2e-05
Identities = 62/384 (16%), Positives = 108/384 (28%), Gaps = 132/384 (34%)
Query: 356 DLSVGEAIEVAKDIFALNAAQFYKINLGVKDFASKD--DMHQIYLKKSDAFE------SD 407
D GE KDI ++ F V +F KD DM + L K + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 408 VSLIRVIWVDASGQHRCRVVPVKRF-NDIVTK-YGVGLTFACMGMTSAVDGPADGTNLSG 465
+R+ W S Q V++F +++ Y F + + P+ T +
Sbjct: 62 SGTLRLFWTLLSKQEEM----VQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYI 113
Query: 466 TGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVL 525
RL D + A ++ +P+ LR+ L+ N+++
Sbjct: 114 EQRDRLYNDNQ-------------VFAKYNVSRLQPYL-----KLRQALLELRPAKNVLI 155
Query: 526 N--AGFEIEFYLLKSVL-----REGKEE--------WVPIDFTPYCSTAA--------YD 562
+ G K+ + K + W ++ S
Sbjct: 156 DGVLGSG------KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLY 207
Query: 563 AVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKA---ADN---------- 609
+ P + +D HS NI +L + + + L N
Sbjct: 208 QIDPNWTS-RSD-HSSNI---KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 610 ------LIFTR-----EVLRAVARKH----------------GLLATFV-------PK-- 633
L+ TR + L A H LL ++ P+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 634 -----FALDDIGSGSHVHLSLWQN 652
L I L+ W N
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN 346
Score = 44.8 bits (105), Expect = 9e-05
Identities = 102/652 (15%), Positives = 175/652 (26%), Gaps = 205/652 (31%)
Query: 94 NISAVLIDDGLK-LDKKHGLDWHKSLVPFVGRILRIERLAEEILDQASPDGS----IWTL 148
+I +V D + D K D KS IL E + + I+ WTL
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKS-------ILSKEEI-DHIIMSKDAVSGTLRLFWTL 71
Query: 149 --------DVFIETFLK--------QLRSAAN-KIVGLKSIAAYRSGLEINP------HV 185
F+E L+ +++ + + R L + +V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 186 TKKDAEEGLAEDLR---------------SGKPVRITNKSLIDY---------IF-IS-- 218
++ L + L SGK + + Y IF ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 219 -----SLEVAQFLDLPLQIHTGFGDK-DLDLRLSNPLH-----LRAILEDKRFSKCRFVL 267
+ L QI + + D + +H LR +L+ K + C VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 268 LHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV--MFSTD 325
L+ + A + K+ + + + L A T + +
Sbjct: 251 LNVQNAKAWNA-----------FNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 326 AYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEV---AKDIFA------LNAAQ 376
E L K L C +DL E + I A L
Sbjct: 297 TLTPDEVKSLLLK--------YLD--CRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWD 345
Query: 377 FYK----------INLGVKDFASKDDMHQIYLKKSDAFESDV----SLIRVIWVDASGQH 422
+K I + + +++ + S F L+ +IW D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKS- 402
Query: 423 RCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIP 482
V +V K + P + T I + P + +
Sbjct: 403 ---DVM-----VVVNK--------LHKYSLVEKQPKEST-------ISI-PSIYLELK-- 436
Query: 483 WQKQEEMIMADMH---------LKPGEPWEYCPREA-----------LRKVSRLLK-EEF 521
K E +H K + + P L+ + + F
Sbjct: 437 -VKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 522 NLV-LNAGFEIEFYLLKSVLREGKEEWVP--------IDFTPYCSTAAYDAVS-PVFQEV 571
+V L+ F L+ +R W Y Y + P ++ +
Sbjct: 494 RMVFLDFRF------LEQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDNDPKYERL 544
Query: 572 LADL-HSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVAR 622
+ + L E L IAL A D IF E + V R
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIAL------MAEDEAIF-EEAHKQVQR 589
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 46.0 bits (108), Expect = 2e-05
Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 11/190 (5%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+ + P+ +HT G L + L + + + H +
Sbjct: 170 ALEVAARTSILTGCPILVHTQLGTM--------ALEVAKHLIGFGANPDKIQISHLNKNP 221
Query: 275 SKEASYLAYVYPQVYLDFGLA--IPKLSVQGMISSIKELLELAPTKKVMFSTDA-YASPE 331
K V L F + + +IK L++ K + S DA +
Sbjct: 222 DKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILYQ 281
Query: 332 TYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLGVKDFASKD 391
+ K + + L D + VG + E DI N + + K
Sbjct: 282 RNYGLTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEKRNFDPLKV 341
Query: 392 DMHQIYLKKS 401
+ LKK
Sbjct: 342 SKEVLELKKE 351
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
2.00A {Lactobacillus acidophilus}
Length = 312
Score = 45.5 bits (108), Expect = 3e-05
Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 37/194 (19%)
Query: 205 RITNKSLIDYIFISSLEVAQFLDLPLQIH--TGFGDKDLDLRLSNPLH-----LRAILED 257
R KS+ D F L A L +PL +H D +L S L+ + D
Sbjct: 133 RHLGKSIADKEFRPVLAQAAKLHVPLWMHPVFDARKPDNNLVFSWEYELSQAMLQLVQSD 192
Query: 258 --KRFSKCRFVLLHA--SYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISS 307
+ + + ++ HA PF + + Y+D ++ G +
Sbjct: 193 LFQDYPNLKILVHHAGAMVPFFSGRIDHILDEKHAQDFKKFYVD-------TAILGNTPA 245
Query: 308 IKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367
++ ++ V+F TDA P + + A +++ + D I + + +
Sbjct: 246 LQLAIDYYGIDHVLFGTDA---P--FAVMPSGADQIITQAINDLTISD--------KDKQ 292
Query: 368 DIFALNAAQFYKIN 381
IF N K
Sbjct: 293 KIFHDNYYSLIKEG 306
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 40.4 bits (95), Expect = 0.001
Identities = 46/293 (15%), Positives = 90/293 (30%), Gaps = 75/293 (25%)
Query: 128 IERLAE----EILDQASPDGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAYRSGLE--- 180
+ +L E E+ A I+ F K+ + + +G++
Sbjct: 17 LVKLKENGIKEVCSLAFFPVKPKYPQTMIDVF--------RKLTEFEPLRCEAAGVKMHP 68
Query: 181 ---INPHVTKKDAEEGLAEDLRSGKPVRI--TNKSLIDY-------IFISSLEVAQFLDL 228
I+P D E + L G+ V ++ + S LE+A+ +D+
Sbjct: 69 AVGIHPRCIPPDYEF-VLGYLEEGEWVAFGEIG---LELVTDEEIEVLKSQLELAKRMDV 124
Query: 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288
P IHT G+K R + ILE F V+ H ++
Sbjct: 125 PCIIHTPRGNKLKATRKT-----LEILESLDFPADLAVIDHVNFETLDMV---------- 169
Query: 289 YLDFGLAIPKLSVQGMIS-----SIKELLELAPTKKVMFSTDA-YASPETYFLGAKRARE 342
L+ + + ++ ++ M ++DA Y E + E
Sbjct: 170 -LETEY---WIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGYRDVEITTV-----AE 220
Query: 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLGVKDFASKDDMHQ 395
+ E + + NA +F ++ + A+ + H
Sbjct: 221 AA----------VKIEEAVGREEMEKVARENARKFLRV----LEAAALEHHHH 259
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 40.3 bits (94), Expect = 0.002
Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 39/197 (19%)
Query: 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNP------LHLRAILED- 257
T+ L D I+ E L++P IH +
Sbjct: 150 HWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGD 209
Query: 258 --KRFSKCRFVLLHA--SYPF-----------SKEASYLAYVYPQVYLDFGLAIPKLSVQ 302
K F + +FV+ H + P+ K+ +V ++ D +
Sbjct: 210 LFKDFPELKFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQ----- 264
Query: 303 GMISSIKELLELAPTKKVMFSTDA-YASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE 361
I L + P V+F+++ A + + T +
Sbjct: 265 ---PGIDLLNTVIPVDNVLFASEMIGAVRGIDPRTGFYYDDTKRYIEASTILTP------ 315
Query: 362 AIEVAKDIFALNAAQFY 378
E + I+ NA + Y
Sbjct: 316 --EEKQQIYEGNARRVY 330
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 37.4 bits (86), Expect = 0.016
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 234 TGFGDKDLDLRLSNPLH--LRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291
G D + + L L + D R S F L +Y S+E + LA YP + L
Sbjct: 328 KGA-DIPMRTEYVDALKPLLTRLGNDPRLSIILFTLDETTY--SRELAPLAGHYPVLKLG 384
Query: 292 ----FGLAIPKLSVQGMISSIKELLELAP-TKKVMFSTDAYASPETYFLGAKRAREVVFS 346
F S +GM+ +++ E A V F+ D + + AR V +
Sbjct: 385 PSWWF-----HDSPEGMMRFREQVTETAGFYNTVGFNDDTR-AFLSIPARHDVARRVDSA 438
Query: 347 VLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381
L + + + EA E+ D+ + YK++
Sbjct: 439 FLARMVAEHRMDLVEAEELIVDLTYNLPKKAYKLD 473
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN;
2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Length = 307
Score = 35.1 bits (81), Expect = 0.069
Identities = 23/202 (11%), Positives = 58/202 (28%), Gaps = 48/202 (23%)
Query: 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG---DKDLDLRLSNPLH----------L 251
+ + + +H K++D+ L PL +
Sbjct: 126 NSRGLYFGSPVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFMDTTMTFI 185
Query: 252 RAILED--KRFSKCRFVLLHA--SYPF----------SKEASYLAYVYPQVYLDFGLAIP 297
+ +++ + ++ HA + V VY D
Sbjct: 186 NMLKYHFFEKYPNIKVIIPHAGAFLGIVDDRIAQYAQKVYQVDVYDVMHHVYFD------ 239
Query: 298 KLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDL 357
++ + + L+ LA + +++ +D P + +R++ ++ +
Sbjct: 240 -VAGAVLPRQLPTLMSLAQPEHLLYGSDI---P---YTPLDGSRQLGHALATTDLLTN-- 290
Query: 358 SVGEAIEVAKDIFALNAAQFYK 379
E + IF NA +
Sbjct: 291 ------EQKQAIFYDNAHRLLT 306
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 34.6 bits (79), Expect = 0.085
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+FI++ P+ HT F L A+L+ R + H
Sbjct: 139 VFIAAALAHNQTGRPISTHTSFST--------MGLEQLALLQAHGVDLSRVTVGHCDLKD 190
Query: 275 SKE-ASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTD 325
+ + + + V D + I+ + L + +VM S D
Sbjct: 191 NLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMD 242
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 34.7 bits (79), Expect = 0.090
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 17/126 (13%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+ LPL +H + + ++E++ VL H +
Sbjct: 191 SLRGAARAQVRTGLPLMVHLPGWFRL-------AHRVLDLVEEEGADLRHTVLCHMNPSH 243
Query: 275 SKEASYLAYVYPQVYLDF----------GLAIPKLSVQGMISSIKELLELAPTKKVMFST 324
+L+F + S + +I L + +++ S
Sbjct: 244 MDPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSH 303
Query: 325 DAYASP 330
D +
Sbjct: 304 DVFVKM 309
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 34.0 bits (79), Expect = 0.11
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 29/126 (23%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
F++ L +A L++P+ +H + +LE V LH F
Sbjct: 113 AFVAQLRIAADLNMPVFMHCRDAHER----------FMTLLEPWLDKLPGAV-LHC---F 158
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMI------SSIKELLELAPTKKVMFSTDA-Y 327
+ + Q + G+ I + G + ++ELL L P +K++ TDA Y
Sbjct: 159 TGTREEM-----QACVAHGIYI---GITGWVCDERRGLELRELLPLIPAEKLLIETDAPY 210
Query: 328 ASPETY 333
P
Sbjct: 211 LLPRDL 216
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 34.1 bits (79), Expect = 0.13
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 29/126 (23%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+ L +A L LP+ +H + L AIL+D R V +H F
Sbjct: 115 ALEAQLTLAAQLRLPVFLHERDASER----------LLAILKDYRDHLTGAV-VHC---F 160
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMI------SSIKELLELAPTKKVMFSTDA-Y 327
+ E L YLD L I + G I + + L+ P ++M +DA Y
Sbjct: 161 TGEREAL-----FAYLDLDLHI---GITGWICDERRGTHLHPLVGNIPEGRLMLESDAPY 212
Query: 328 ASPETY 333
P +
Sbjct: 213 LLPRSL 218
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 34.0 bits (78), Expect = 0.16
Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 49/206 (23%)
Query: 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLH-------------- 250
+ L A+ L L +H +D R++
Sbjct: 146 HVNEWDLNAQELFPVYAAAERLKCSLFVHPWDMQ--MDGRMAKYWLPWLVGMPAETTIAI 203
Query: 251 LRAILED--KRFSKCRFVLLHA--SYPFSKEASYLAYVYPQVYLDFGLAIPKL------- 299
I+ ++F K + H ++PF+ +++ + P
Sbjct: 204 CSMIMGGVFEKFPKLKVCFAHGGGAFPFT--VGRISHGFSMRPDLCAQDNPMNPKKYLGS 261
Query: 300 ----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE 355
++ S+K L ++ KV+ TD + E + DE
Sbjct: 262 FYTDALVHDPLSLKLLTDVIGKDKVILGTD--------YPFPLGELEPGKLIESMEEFDE 313
Query: 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381
E + A NA F +
Sbjct: 314 --------ETKNKLKAGNALAFLGLE 331
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 33.2 bits (75), Expect = 0.26
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 12/116 (10%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYP 273
F ++ + + HT G A L + + V+ H
Sbjct: 164 FFRAAARAQKETGAVIITHTQEGTM--------GPEQAAYLLEHGADPKKIVIGHMCGNT 215
Query: 274 FSKEASYLAYVYPQVYLD---FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326
+ D + + + + ++ LL K++M S +
Sbjct: 216 DPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHNT 271
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 32.7 bits (74), Expect = 0.34
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYP 273
+ ++ + +P+ H+ + L + IL ++ + ++ H
Sbjct: 152 VIRAAAIANKETKVPIITHSNAHNNT-------GLEQQRILTEEGVDPGKILIGHLGDTD 204
Query: 274 FSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETY 333
+A + LD L V + L++ + K+M S D + +
Sbjct: 205 NIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWG 264
Query: 334 FLGAKRAREVV----FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFY 378
+ ++ +++ + I G EV IF N +F+
Sbjct: 265 TAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFF 313
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 32.7 bits (74), Expect = 0.39
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 20/136 (14%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS--- 271
F ++ V + +P+ HT G + +L R ++ H
Sbjct: 174 FFRAAARVQRETGVPIITHTQEGQQ--------GPQQAELLTSLGADPARIMIGHMDGNT 225
Query: 272 -----YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326
+ +A+ + G + +S + LL +++ S D+
Sbjct: 226 DPAYHRETLRHGVSIAFDRIGLQGMVGTP----TDAERLSVLTTLLGEGYADRLLLSHDS 281
Query: 327 YASPETYFLGAKRARE 342
A
Sbjct: 282 IWHWLGRPPAIPEAAL 297
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 32.5 bits (75), Expect = 0.40
Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 28/125 (22%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+F+ +E+A L+LPL +H + IL + + R V +H ++
Sbjct: 121 VFVEQIELAGKLNLPLVVHIRDAYSE----------AYEILRTESLPEKRGV-IH-AFSS 168
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMIS-----SIKELLELAPTKKVMFSTDA-YA 328
E A + ++D G L + G ++ +++E+++ + ++ TD +
Sbjct: 169 DYE---WA----KKFIDLGF---LLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFL 218
Query: 329 SPETY 333
P+ +
Sbjct: 219 PPQPF 223
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 32.8 bits (74), Expect = 0.40
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 10/168 (5%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YP 273
+ P+ HT G L IL+ + + H
Sbjct: 169 TIRAVARAHHETKAPIHSHTEAGTM--------ALEQIEILKQENIPLEYLSIGHMDRNL 220
Query: 274 FSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETY 333
+A + D I I++I L+ +++ S D
Sbjct: 221 DPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARKTYYK 280
Query: 334 FLGAKRAREVVFSVLRDTCIDEDLSVGEAIE-VAKDIFALNAAQFYKI 380
G E + IDE G E + K F N A+ +
Sbjct: 281 HYGHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTF 328
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 32.7 bits (74), Expect = 0.41
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 22/139 (15%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS--- 271
+ ++ + +P+ HT +D AI E + S R + H+
Sbjct: 149 VLKAAARASLATGVPVTTHTAASQRD-------GEQQAAIFESEGLSPSRVCIGHSDDTD 201
Query: 272 -----YPFSKEASYLAY-------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319
+ + + + + S Q IK L++ K+
Sbjct: 202 DLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ 261
Query: 320 VMFSTDAYASPETYFLGAK 338
++ S D +Y
Sbjct: 262 ILVSNDWTFGFSSYVTNIM 280
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.93
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 54 KRNLKNIA---ELYGCDS----SLQA-VE 74
K+ LK + +LY DS +++A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.2
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 21 HNIVSLDSSFPFIQSFSEATGPALS 45
+ L +S ++ +++ + PAL+
Sbjct: 20 QALKKLQAS---LKLYADDSAPALA 41
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 30.9 bits (71), Expect = 1.0
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 28/123 (22%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
FI +++ + L+ P+ +HT D AIL +++ + C V LH +
Sbjct: 112 SFIHHIQIGRELNKPVIVHTRDARAD----------TLAILREEKVTDCGGV-LH-CFTE 159
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMI-----SSIKELLELAPTKKVMFSTDA-YA 328
+E A LD G I S G++ +++ P +++ TD+ Y
Sbjct: 160 DRE---TA----GKLLDLGFYI---SFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYL 209
Query: 329 SPE 331
+P
Sbjct: 210 APV 212
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 31.1 bits (71), Expect = 1.3
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 30/136 (22%)
Query: 215 IFISSLEVAQFLDLPLQIHT--GFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY 272
F E+++ LP+ +H + I + R V +H S+
Sbjct: 128 YFEKQFELSEQTKLPMFLHCRNSHAE------------FLDITKRNRDRCVGGV-VH-SF 173
Query: 273 PFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELA---PTKKVMFSTDA-YA 328
+KEA+ +D L I G + LE+ P++K+M TDA +
Sbjct: 174 DGTKEAA-------AALIDLDLYI---GFNGCSLKTEANLEVLKSIPSEKLMIETDAPWC 223
Query: 329 SPETYFLGAKRAREVV 344
++ G+K R
Sbjct: 224 GVKSTHAGSKYIRTAF 239
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 30.9 bits (70), Expect = 1.3
Identities = 24/223 (10%), Positives = 54/223 (24%), Gaps = 67/223 (30%)
Query: 199 RSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIH-TGFGDKDLDLRLSNPLHLRAILED 257
S + T + + LD+P +H +D + +P L
Sbjct: 130 FSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAF 189
Query: 258 -----------------KRFSKCRFVLLHA--SYPF------------------SKEASY 280
+ +L H P+ + +
Sbjct: 190 AQETAVHALRLMASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLPPRYPAKRRF 249
Query: 281 LAYVYPQVYLDFGLAIPKLSVQGMIS--SIKELLELAPTKKVMFSTDAYASPETYFLGAK 338
+ Y ++ G ++ + + +++FSTD + P A
Sbjct: 250 MDYFNENFHIT---------TSGNFRTQTLIDAILEIGADRILFSTD-W--PFENIDHAS 297
Query: 339 RAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381
++ I NA + +K++
Sbjct: 298 DWFNAT-----------SIAE----ADRVKIGRTNARRLFKLD 325
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Length = 357
Score = 30.6 bits (69), Expect = 1.8
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 41/138 (29%)
Query: 259 RFSKCRFVLLHA--SYPF------------SKEASYLAYVYPQVYLDFGLAIPKLSVQGM 304
R+ K ++ H PF S Y Y+ + K
Sbjct: 243 RYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHSVSYYFKNSFYITPSGMLTK------ 296
Query: 305 ISSIKELLELAPTKKVMFSTDA-YASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI 363
+ + +++++ D Y PE + L + + +
Sbjct: 297 -PQFDLVKKEVGIDRILYAADYPYIEPEK-----------LGVFLDELGLTD-------- 336
Query: 364 EVAKDIFALNAAQFYKIN 381
E + I N A+ ++
Sbjct: 337 EEKEKISYTNGAKLLGLS 354
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large
subunit (EUTB), structural genomics; HET: MSE; 2.15A
{Listeria monocytogenes serotype 4B}
Length = 455
Score = 30.1 bits (68), Expect = 2.5
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 439 YGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQ 484
YG+G A +G+ D L + + ++W +P Q
Sbjct: 184 YGIG--DAVIGLNPVDDSTDSVVRL-----LNKFEEFRSKWDVPTQ 222
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 30.0 bits (68), Expect = 3.3
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 464 SGTGEIRLMPDLSTRWRIP-----WQKQEEMIM--ADMHLKPGEPWEYC-----PREALR 511
SG G R + + W + Q+ ++ + + L PG Y P E
Sbjct: 181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL-LGPGGVLVYSTCTFAPEENEG 239
Query: 512 KVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEW 547
V+ LK + F +E L + G EW
Sbjct: 240 VVAHFLKA------HPEFRLEDARLHPLFAPGVPEW 269
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 5.0
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 35/139 (25%)
Query: 448 MGMTSAVDGPADGTNLSG-----TGE--------------------IRLM-PDLSTRWRI 481
MG S +G G +G T E IRL+ P+L +
Sbjct: 858 MGFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNP 917
Query: 482 PWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR 541
++ + ++ + L+P E +E + + + + E Y +K L
Sbjct: 918 EKKEMIQEVIVEEDLEPFE----ASKETAEQF-KHQHGDKVDIFEIPETGE-YSVK--LL 969
Query: 542 EGKEEWVPIDFTPYCSTAA 560
+G ++P + A
Sbjct: 970 KGATLYIP-KALRFDRLVA 987
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 28.7 bits (65), Expect = 6.9
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 19/66 (28%)
Query: 294 LAIPKLSVQGMISSIKELLEL----APTKK--------VMFSTDAYASPETYFLGAKRAR 341
L +P ++ I+ L+E+ P V+ + LG + R
Sbjct: 107 LCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEP-------SLGVSQPR 159
Query: 342 EVVFSV 347
+ V
Sbjct: 160 RALLFV 165
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 28.6 bits (65), Expect = 7.0
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 17/60 (28%)
Query: 282 AYVYPQVYL---DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAK 338
++Y QV P+ +V+ +I + ++ + E G K
Sbjct: 85 GHIYFQVTRGTSPRAHQFPENTVKPVI--------------IGYTKENPRPLENLEKGVK 130
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 28.6 bits (64), Expect = 7.7
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 307 SIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366
+++ L+ + +VM +D Y P + LG ++ +V + +L
Sbjct: 276 ALELLVSVMGEDRVMLGSD-Y--P--FPLGEQKIGGLV--------LSSNLGE----SAK 318
Query: 367 KDIFALNAAQFYKINL 382
I + NA++F+ IN+
Sbjct: 319 DKIISGNASKFFNINV 334
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 28.7 bits (64), Expect = 8.5
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 4/41 (9%)
Query: 424 CRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
+ + F L + + A + N+S
Sbjct: 222 NKFTMYRVFGS----KKTELLWVSKAIVQAANDGNQVINIS 258
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II),
nysgxrc structural genomics, NEW YORK SGX research
center for struc genomics; 2.30A {Clostridium difficile}
Length = 287
Score = 28.3 bits (64), Expect = 9.3
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 41/125 (32%)
Query: 506 PREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS 565
++RK L E ++ L+ E ++ G ++ + + +
Sbjct: 31 SS-SMRKEFYGL-ETYSPFLDLDLE-----DYNICDYG-----DLEISVGSTEQVLKEIY 78
Query: 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALG--HTVAAKAADNLIFTREVLRAVARK 623
+++ D + +G H V T +AV K
Sbjct: 79 QETYKIVRD-----------------SKVPFMIGGEHLV----------TLPAFKAVHEK 111
Query: 624 HGLLA 628
+ +
Sbjct: 112 YNDIY 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,037,264
Number of extensions: 710492
Number of successful extensions: 1914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1847
Number of HSP's successfully gapped: 69
Length of query: 698
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 598
Effective length of database: 3,909,693
Effective search space: 2337996414
Effective search space used: 2337996414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)