BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005412
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
E C +C E++ D LGI C H FH C+ +WL + +CP+C
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 647 EEPCC-ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
+E CC IC EY GD L C H FH C+ WL + CP+C+
Sbjct: 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 646 DEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTT 693
D C +C E DG+ L CGH FH C+ WL + CP+C+ T
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
C +C+E+Y G+++ L C H FH +CI WL Q + CP+C+ +
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
S++ C +C ++ L +L C H+FH C+ +WL CPIC+ P+
Sbjct: 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
C IC +G+++ L C H FH C+ QWL+ CPIC+
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
++ +E C IC E + + L +C H F + CI +W+ +K CPIC+
Sbjct: 48 DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
++ +E C IC E + + L +C H F + CI +W+ +K CPIC+
Sbjct: 48 DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
++ +E C IC E + + L +C H F + CI +W+ +K CPIC+
Sbjct: 59 DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 105
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 648 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICK 691
+ C CQ E D + + +C H FH C+ W+ Q N CP+C+
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
+DEE CCIC DG IL C H F CI +W + CPIC+
Sbjct: 13 TDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 626 TIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWL 681
T K + KRY I I S C IC + Y++ G L +CGH F + C++ L
Sbjct: 53 TCRKKINHKRYHP--IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 110
Query: 682 MQKNLCPICK 691
N CP C+
Sbjct: 111 KNANTCPTCR 120
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 650 CCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLMQKNLCPICK 691
C IC + Y++ G L +CGH F + C++ L N CP C+
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 644 PSDEEPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLMQKNLCPICK 691
PS C IC + Y++ G L +CGH F + C++ L N CP C+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 644 PSDEEPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLMQKNLCPICK 691
PS C IC + Y++ G L +CGH F + C++ L N CP C+
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 648 EPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICK 691
E C IC E D N + L C H F CI +W+ Q CP+CK
Sbjct: 6 ERCPICLE---DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 650 CCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLMQKNLCPICK 691
C IC + Y++ G L +CGH F + C++ L N CP C+
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 668 CGHDFHTNCIKQWLMQKNLCPI 689
C H FH +CI +WL + +CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
C +C + D I++C H F CI ++L CPIC
Sbjct: 18 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
C +C + D I++C H F CI ++L CPIC
Sbjct: 18 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
C +C + D I++C H F CI ++L CPIC
Sbjct: 14 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW---LMQKNLCPIC 690
E C +C E + I++CGH+F CI +W L + CP+C
Sbjct: 15 EASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
C IC E + + I C H++ + CI+++L K CP C T
Sbjct: 25 CGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 620 TGLNEETIMKIMK--QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCI 677
TGL E T +K Q++Y L E+ S + C IC E + ++ I CGH T+C+
Sbjct: 306 TGLCEPTPQDHIKVTQEQY-ELXCEMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCL 361
Query: 678 KQWLMQKNL-CPICK 691
W + CP C+
Sbjct: 362 TSWQESEGQGCPFCR 376
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 633 QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICK 691
Q++Y L E+ S + C IC E D + I CGH T+C+ W + CP C+
Sbjct: 11 QEQY-ELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 620 TGLNEETIMKIMK--QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCI 677
TGL E T +K Q++Y L E+ S + C IC E + ++ I CGH T+C+
Sbjct: 304 TGLCEPTPQDHIKVTQEQY-ELYCEMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCL 359
Query: 678 KQWLMQKNL-CPICK 691
W + CP C+
Sbjct: 360 TSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 620 TGLNEETIMKIMK--QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCI 677
TGL E T +K Q++Y L E+ S + C IC E + ++ I CGH T+C+
Sbjct: 304 TGLCEPTPQDHIKVTQEQY-ELYCEMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCL 359
Query: 678 KQWLMQKNL-CPICK 691
W + CP C+
Sbjct: 360 TSWQESEGQGCPFCR 374
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 633 QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICK 691
Q++Y L E+ S + C IC E D + I CGH T+C+ W CP C+
Sbjct: 13 QEQY-ELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCI----KQWLMQK--NLCPICKTTGLP 696
+E C IC E T +L DCGH F C+ K+ ++ K + CP+C+ + P
Sbjct: 18 EEVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 639 LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICK 691
L E+ S + C IC E D + I CGH T+C+ W + CP C+
Sbjct: 19 LXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|3LW5|L Chain L, Improved Model Of Plant Photosystem I
Length = 161
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 49 TVASGGATCVNAVTHDVRNLSTWNSGEPSCRLSLQ---NQKNDDEMKMEHGWS 98
++A+GG + ++ + +S++N G PS SL +K D+++ GW+
Sbjct: 81 SLAAGGLVVILSLCLTIYGISSFNEGAPSTAPSLTLTGRKKEPDQLQTADGWA 133
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 620 TGLNEETIMKIMK--QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCI 677
TGL E T +K Q++Y L E+ S + C IC E + ++ I CGH T+C+
Sbjct: 310 TGLCEPTPHDHIKVTQEQY-ELYCEMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCL 365
Query: 678 KQWLMQKNL-CPICK 691
W CP C+
Sbjct: 366 TAWQESDGQGCPFCR 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 620 TGLNEETIMKIMK--QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCI 677
TGL E T +K Q+++ L E+ S + C IC E + ++ I CGH T+C+
Sbjct: 306 TGLCEPTPQDHIKVTQEQF-ELXCEMGSTFQLCKICAE---NDKDVKIEPCGHLMCTSCL 361
Query: 678 KQWLMQKNL-CPICK 691
W + CP C+
Sbjct: 362 TSWQESEGQGCPFCR 376
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 650 CCICQEE-YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
C IC E+ +T +L CGH H C ++ L + CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,282,670
Number of Sequences: 62578
Number of extensions: 607228
Number of successful extensions: 1424
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 48
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)