Query 005412
Match_columns 697
No_of_seqs 264 out of 1806
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.1E-14 3.6E-19 126.7 5.7 77 618-696 13-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 1.2E-13 4.1E-18 114.6 5.8 54 643-696 11-64 (74)
3 1x4j_A Ring finger protein 38; 99.4 7.9E-14 2.7E-18 116.3 4.1 54 643-696 19-72 (75)
4 2kiz_A E3 ubiquitin-protein li 99.4 2.1E-13 7.1E-18 111.7 6.4 55 642-696 9-63 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.4 1.3E-13 4.4E-18 108.0 4.1 51 645-695 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 2E-13 6.9E-18 114.3 4.5 54 643-696 11-64 (78)
7 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.4E-17 116.3 6.7 50 646-695 24-93 (114)
8 2ecm_A Ring finger and CHY zin 99.3 1.5E-12 5E-17 101.8 4.8 51 645-695 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 1.8E-12 6.3E-17 105.1 4.1 54 643-696 11-68 (69)
10 2ecl_A Ring-box protein 2; RNF 99.3 2.8E-12 9.6E-17 109.4 5.3 52 644-695 12-75 (81)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.8E-12 6.1E-17 106.1 3.6 53 644-696 7-63 (71)
12 2d8t_A Dactylidin, ring finger 99.2 3E-12 1E-16 105.8 3.0 50 643-695 11-60 (71)
13 2djb_A Polycomb group ring fin 99.2 8.9E-12 3.1E-16 103.2 5.3 51 643-696 11-62 (72)
14 3dpl_R Ring-box protein 1; ubi 99.2 8.5E-12 2.9E-16 112.5 5.4 51 644-694 34-99 (106)
15 2xeu_A Ring finger protein 4; 99.2 4.8E-12 1.7E-16 101.2 3.2 50 646-695 2-55 (64)
16 2ct2_A Tripartite motif protei 99.2 1.7E-11 5.9E-16 104.0 6.0 54 642-695 10-67 (88)
17 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.3E-16 104.4 5.0 50 643-695 11-60 (81)
18 1chc_A Equine herpes virus-1 r 99.2 1E-11 3.5E-16 101.1 4.0 48 646-695 4-51 (68)
19 2yur_A Retinoblastoma-binding 99.2 1.6E-11 5.4E-16 102.5 5.0 50 643-695 11-63 (74)
20 2ecn_A Ring finger protein 141 99.1 6.8E-12 2.3E-16 102.9 1.2 50 643-696 11-60 (70)
21 2ysl_A Tripartite motif-contai 99.1 2.9E-11 9.8E-16 99.6 4.9 51 643-696 16-69 (73)
22 4ayc_A E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 114.9 3.0 46 647-695 53-98 (138)
23 2d8s_A Cellular modulator of i 99.1 2.8E-11 9.6E-16 104.0 4.9 53 642-695 10-69 (80)
24 2ecy_A TNF receptor-associated 99.1 4.1E-11 1.4E-15 97.5 4.7 50 644-696 12-62 (66)
25 2ecw_A Tripartite motif-contai 99.1 5.8E-11 2E-15 99.6 5.7 50 643-695 15-70 (85)
26 1t1h_A Gspef-atpub14, armadill 99.1 5.1E-11 1.8E-15 99.6 4.8 49 644-695 5-54 (78)
27 2ysj_A Tripartite motif-contai 99.1 1.1E-10 3.6E-15 94.0 5.5 45 643-690 16-63 (63)
28 2ecv_A Tripartite motif-contai 99.1 8.2E-11 2.8E-15 98.6 5.1 50 643-695 15-70 (85)
29 4a0k_B E3 ubiquitin-protein li 99.1 1.7E-11 5.8E-16 112.7 0.6 52 643-694 44-110 (117)
30 3lrq_A E3 ubiquitin-protein li 99.1 5.8E-11 2E-15 104.8 3.6 46 647-695 22-69 (100)
31 3ztg_A E3 ubiquitin-protein li 99.1 1E-10 3.4E-15 100.8 5.0 50 642-694 8-60 (92)
32 2egp_A Tripartite motif-contai 99.1 2.9E-11 9.9E-16 100.8 1.3 50 643-695 8-64 (79)
33 2y43_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 102.1 3.9 46 647-695 22-68 (99)
34 2ckl_A Polycomb group ring fin 99.0 1.1E-10 3.7E-15 103.9 3.7 47 646-695 14-61 (108)
35 4ap4_A E3 ubiquitin ligase RNF 99.0 9.8E-11 3.4E-15 105.7 3.5 51 645-695 5-59 (133)
36 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.9E-15 90.7 4.1 45 643-690 11-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.0 1.6E-10 5.4E-15 105.2 4.3 46 647-695 52-98 (124)
38 2ckl_B Ubiquitin ligase protei 99.0 2.8E-10 9.4E-15 108.4 4.1 47 646-695 53-101 (165)
39 1jm7_A BRCA1, breast cancer ty 98.9 3.5E-10 1.2E-14 100.2 3.9 45 648-695 22-69 (112)
40 1g25_A CDK-activating kinase a 98.9 4.6E-10 1.6E-14 91.0 4.2 50 646-695 2-54 (65)
41 1z6u_A NP95-like ring finger p 98.9 4.9E-10 1.7E-14 106.3 4.4 46 648-696 79-125 (150)
42 2kr4_A Ubiquitin conjugation f 98.9 7.6E-10 2.6E-14 95.4 5.0 49 644-695 11-59 (85)
43 3hct_A TNF receptor-associated 98.9 5.1E-10 1.7E-14 101.3 3.9 50 643-695 14-64 (118)
44 3l11_A E3 ubiquitin-protein li 98.9 2.5E-10 8.6E-15 102.4 1.0 47 645-694 13-60 (115)
45 4ap4_A E3 ubiquitin ligase RNF 98.9 6.7E-10 2.3E-14 100.2 3.4 52 644-695 69-124 (133)
46 2ct0_A Non-SMC element 1 homol 98.9 1E-09 3.4E-14 93.4 3.6 50 643-694 11-62 (74)
47 2kre_A Ubiquitin conjugation f 98.9 1.1E-09 3.8E-14 97.5 4.0 49 644-695 26-74 (100)
48 1wgm_A Ubiquitin conjugation f 98.8 1.5E-09 5.2E-14 96.3 4.6 49 644-695 19-68 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.9E-14 97.6 3.8 46 647-695 23-69 (116)
50 2c2l_A CHIP, carboxy terminus 98.8 2.8E-09 9.7E-14 107.3 6.2 49 644-695 205-254 (281)
51 2vje_A E3 ubiquitin-protein li 98.8 2.3E-09 8E-14 87.7 3.0 47 646-695 7-56 (64)
52 2y1n_A E3 ubiquitin-protein li 98.8 3.2E-09 1.1E-13 115.0 4.7 46 647-695 332-378 (389)
53 3knv_A TNF receptor-associated 98.7 1.2E-09 4.3E-14 102.6 0.3 49 643-694 27-76 (141)
54 2vje_B MDM4 protein; proto-onc 98.7 3.7E-09 1.3E-13 86.3 2.5 48 645-695 5-55 (63)
55 1bor_A Transcription factor PM 98.7 2.1E-09 7.3E-14 85.4 1.1 45 645-695 4-48 (56)
56 1e4u_A Transcriptional repress 98.7 8.5E-09 2.9E-13 88.0 4.5 51 644-695 8-61 (78)
57 1jm7_B BARD1, BRCA1-associated 98.7 2.3E-09 7.8E-14 96.9 0.5 44 647-695 22-66 (117)
58 2yu4_A E3 SUMO-protein ligase 98.7 8.5E-09 2.9E-13 90.2 3.4 46 645-693 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.6 8.3E-09 2.8E-13 86.4 2.0 42 647-695 24-66 (74)
60 3hcs_A TNF receptor-associated 98.6 1.7E-08 5.9E-13 96.3 3.6 50 643-695 14-64 (170)
61 2f42_A STIP1 homology and U-bo 98.6 2.8E-08 9.5E-13 97.5 4.7 49 644-695 103-152 (179)
62 2ecg_A Baculoviral IAP repeat- 98.5 5.7E-08 2E-12 81.3 2.6 42 648-696 26-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.4 3.7E-08 1.3E-12 105.0 1.4 52 644-695 305-372 (381)
64 2ea5_A Cell growth regulator w 98.4 1.4E-07 4.9E-12 78.2 4.4 47 643-696 11-58 (68)
65 1wim_A KIAA0161 protein; ring 98.4 6.9E-08 2.4E-12 83.9 1.3 48 646-693 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.4 1.4E-07 4.7E-12 77.0 2.6 45 648-695 4-49 (61)
67 2yho_A E3 ubiquitin-protein li 98.3 1.3E-07 4.4E-12 80.6 1.2 41 648-695 19-60 (79)
68 3htk_C E3 SUMO-protein ligase 98.3 2E-07 6.8E-12 96.3 2.8 47 646-695 180-231 (267)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.9E-07 1.3E-11 74.2 3.5 48 645-695 4-58 (60)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.2E-07 7.6E-12 99.3 0.7 43 646-695 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.6 2.6E-05 8.9E-10 69.9 3.6 45 649-695 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 8.1E-05 2.8E-09 75.8 3.9 46 646-693 179-226 (238)
73 2ko5_A Ring finger protein Z; 93.8 0.018 6.2E-07 51.1 1.4 46 645-695 26-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.038 1.3E-06 48.0 3.1 35 646-680 2-36 (101)
75 2lri_C Autoimmune regulator; Z 92.5 0.078 2.7E-06 43.9 3.3 50 644-696 9-62 (66)
76 3i2d_A E3 SUMO-protein ligase 87.8 0.26 8.9E-06 53.3 3.1 46 648-695 250-299 (371)
77 1we9_A PHD finger family prote 84.5 0.13 4.6E-06 41.5 -0.9 49 645-693 4-58 (64)
78 4fo9_A E3 SUMO-protein ligase 84.0 0.53 1.8E-05 50.7 3.2 46 648-695 216-265 (360)
79 2l5u_A Chromodomain-helicase-D 83.7 0.47 1.6E-05 38.3 2.0 48 644-694 8-59 (61)
80 3m62_A Ubiquitin conjugation f 83.2 0.48 1.6E-05 56.8 2.7 49 644-695 888-937 (968)
81 1wil_A KIAA1045 protein; ring 82.7 0.86 3E-05 39.8 3.4 37 643-680 11-47 (89)
82 1f62_A Transcription factor WS 81.5 0.52 1.8E-05 36.3 1.5 44 649-692 2-49 (51)
83 1wep_A PHF8; structural genomi 81.0 1.4 4.6E-05 37.2 4.0 48 646-694 11-64 (79)
84 2k16_A Transcription initiatio 78.4 0.31 1.1E-05 40.5 -0.8 50 644-694 15-69 (75)
85 1mm2_A MI2-beta; PHD, zinc fin 77.9 0.35 1.2E-05 39.1 -0.6 49 644-695 6-58 (61)
86 1wem_A Death associated transc 73.2 0.93 3.2E-05 37.8 0.7 48 648-696 17-73 (76)
87 2cs3_A Protein C14ORF4, MY039 72.3 6.6 0.00023 34.1 5.7 40 644-683 12-52 (93)
88 2kgg_A Histone demethylase jar 72.2 1.1 3.8E-05 34.9 1.0 43 649-691 4-52 (52)
89 2lv9_A Histone-lysine N-methyl 71.9 1 3.6E-05 39.6 0.8 47 646-693 27-76 (98)
90 2ysm_A Myeloid/lymphoid or mix 70.8 0.99 3.4E-05 40.1 0.4 39 644-682 4-42 (111)
91 2yql_A PHD finger protein 21A; 70.2 0.32 1.1E-05 38.5 -2.6 46 644-692 6-55 (56)
92 1wee_A PHD finger family prote 69.8 0.35 1.2E-05 40.1 -2.6 51 645-696 14-69 (72)
93 1fp0_A KAP-1 corepressor; PHD 66.8 1.5 5.3E-05 38.3 0.8 48 643-693 21-72 (88)
94 2vpb_A Hpygo1, pygopus homolog 63.0 4.9 0.00017 33.0 3.0 49 644-692 5-65 (65)
95 3v43_A Histone acetyltransfera 62.2 8.9 0.0003 34.2 4.9 33 646-678 4-42 (112)
96 1wew_A DNA-binding family prot 59.1 2 6.7E-05 36.2 -0.0 48 646-694 15-73 (78)
97 2e6r_A Jumonji/ARID domain-con 58.4 0.73 2.5E-05 40.3 -2.9 50 643-692 12-65 (92)
98 1xwh_A Autoimmune regulator; P 57.7 0.99 3.4E-05 36.9 -2.0 45 645-692 6-54 (66)
99 1weu_A Inhibitor of growth fam 57.6 4.5 0.00015 35.5 2.0 44 647-694 36-86 (91)
100 2puy_A PHD finger protein 21A; 57.4 1.2 4E-05 35.6 -1.6 46 645-693 3-52 (60)
101 2d8v_A Zinc finger FYVE domain 56.5 5.7 0.00019 33.2 2.3 33 644-680 5-38 (67)
102 1zbd_B Rabphilin-3A; G protein 56.3 3.1 0.00011 38.8 0.8 34 645-678 53-88 (134)
103 3o70_A PHD finger protein 13; 55.2 1.4 4.7E-05 36.5 -1.6 48 644-692 16-66 (68)
104 3v43_A Histone acetyltransfera 54.7 2.6 9E-05 37.6 0.1 45 648-692 62-111 (112)
105 1wen_A Inhibitor of growth fam 49.8 6.2 0.00021 32.8 1.5 44 646-694 15-66 (71)
106 2lbm_A Transcriptional regulat 49.5 15 0.00053 34.6 4.4 47 644-693 60-117 (142)
107 2yt5_A Metal-response element- 49.4 6.9 0.00023 31.4 1.7 50 644-693 3-61 (66)
108 2xb1_A Pygopus homolog 2, B-ce 49.3 6.8 0.00023 34.9 1.9 47 647-693 3-61 (105)
109 3ask_A E3 ubiquitin-protein li 45.4 3.6 0.00012 41.7 -0.7 47 647-693 174-225 (226)
110 1weo_A Cellulose synthase, cat 45.0 24 0.00083 31.1 4.5 50 646-695 15-69 (93)
111 3shb_A E3 ubiquitin-protein li 44.8 2.1 7.2E-05 36.3 -2.1 44 649-692 28-76 (77)
112 2zet_C Melanophilin; complex, 44.4 4.3 0.00015 38.7 -0.2 46 646-692 67-116 (153)
113 2co8_A NEDD9 interacting prote 42.9 16 0.00054 30.3 3.0 42 644-695 12-53 (82)
114 1z60_A TFIIH basal transcripti 42.7 7 0.00024 31.8 0.8 43 648-690 16-58 (59)
115 2e6s_A E3 ubiquitin-protein li 42.3 4.3 0.00015 34.4 -0.5 45 648-692 27-76 (77)
116 2cu8_A Cysteine-rich protein 2 37.8 13 0.00043 30.1 1.6 39 647-695 9-47 (76)
117 3asl_A E3 ubiquitin-protein li 37.7 4.1 0.00014 33.8 -1.4 44 649-693 20-69 (70)
118 3mpx_A FYVE, rhogef and PH dom 36.9 7.2 0.00025 41.6 0.0 50 645-694 373-430 (434)
119 2dj7_A Actin-binding LIM prote 36.9 18 0.0006 30.0 2.4 40 646-695 14-53 (80)
120 2ysm_A Myeloid/lymphoid or mix 36.0 3 0.0001 36.9 -2.6 44 649-692 56-103 (111)
121 4gne_A Histone-lysine N-methyl 35.7 12 0.00041 33.7 1.2 43 643-691 11-60 (107)
122 2kwj_A Zinc finger protein DPF 34.7 17 0.00058 32.5 2.1 33 648-680 2-41 (114)
123 1z2q_A LM5-1; membrane protein 34.4 25 0.00086 29.7 3.0 38 643-680 17-55 (84)
124 2ku3_A Bromodomain-containing 33.9 28 0.00096 28.9 3.1 49 644-692 13-65 (71)
125 2l43_A N-teminal domain from h 33.7 20 0.00067 30.9 2.2 50 644-693 22-75 (88)
126 1y02_A CARP2, FYVE-ring finger 33.4 4 0.00014 37.5 -2.3 46 645-690 17-63 (120)
127 1wd2_A Ariadne-1 protein homol 33.1 5.7 0.0002 32.1 -1.2 38 647-684 6-48 (60)
128 1x62_A C-terminal LIM domain p 32.8 24 0.0008 28.8 2.5 39 645-694 13-51 (79)
129 3ql9_A Transcriptional regulat 32.8 33 0.0011 31.9 3.7 47 644-693 54-111 (129)
130 1iml_A CRIP, cysteine rich int 32.4 13 0.00045 30.0 0.9 46 646-695 26-72 (76)
131 1wfk_A Zinc finger, FYVE domai 32.0 24 0.00082 30.4 2.5 37 644-680 6-43 (88)
132 2o35_A Hypothetical protein DU 31.6 17 0.00058 32.6 1.5 11 672-682 43-53 (105)
133 1x4u_A Zinc finger, FYVE domai 31.6 25 0.00087 29.7 2.6 38 643-680 10-48 (84)
134 2dar_A PDZ and LIM domain prot 31.3 23 0.00079 29.6 2.3 39 646-695 24-62 (90)
135 3fyb_A Protein of unknown func 31.1 17 0.0006 32.5 1.5 11 672-682 42-52 (104)
136 1x64_A Alpha-actinin-2 associa 31.1 30 0.001 28.8 3.0 40 645-695 23-62 (89)
137 2yw8_A RUN and FYVE domain-con 30.5 23 0.00078 29.9 2.1 37 644-680 16-53 (82)
138 3t7l_A Zinc finger FYVE domain 30.4 21 0.00072 30.7 1.9 37 645-681 18-55 (90)
139 3kqi_A GRC5, PHD finger protei 29.9 11 0.00036 31.4 -0.1 47 647-693 9-61 (75)
140 1joc_A EEA1, early endosomal a 29.9 19 0.00065 32.9 1.6 36 645-680 67-103 (125)
141 3c6w_A P28ING5, inhibitor of g 29.7 4.4 0.00015 32.5 -2.4 41 647-692 9-57 (59)
142 1wev_A Riken cDNA 1110020M19; 29.4 18 0.00061 31.1 1.3 46 647-692 16-71 (88)
143 1dvp_A HRS, hepatocyte growth 28.7 21 0.0007 35.2 1.7 34 647-680 161-195 (220)
144 2vnf_A ING 4, P29ING4, inhibit 28.6 4.7 0.00016 32.3 -2.4 40 648-692 11-58 (60)
145 3kv5_D JMJC domain-containing 28.5 8.3 0.00028 43.0 -1.3 48 646-693 35-88 (488)
146 2gmg_A Hypothetical protein PF 27.7 9.3 0.00032 34.5 -0.9 26 664-694 69-94 (105)
147 3zyq_A Hepatocyte growth facto 27.5 22 0.00074 35.4 1.7 35 646-680 163-198 (226)
148 1x63_A Skeletal muscle LIM-pro 26.6 44 0.0015 27.1 3.1 40 647-695 15-54 (82)
149 2l3k_A Rhombotin-2, linker, LI 26.2 25 0.00085 31.3 1.7 36 646-682 35-70 (123)
150 2pv0_B DNA (cytosine-5)-methyl 26.0 34 0.0012 37.2 2.9 47 644-693 90-148 (386)
151 1vfy_A Phosphatidylinositol-3- 25.8 32 0.0011 28.3 2.1 32 648-679 12-44 (73)
152 1x61_A Thyroid receptor intera 25.4 43 0.0015 26.4 2.8 35 647-683 33-67 (72)
153 1x4k_A Skeletal muscle LIM-pro 25.4 41 0.0014 26.5 2.7 38 648-694 6-43 (72)
154 2d8z_A Four and A half LIM dom 24.7 47 0.0016 26.1 2.9 11 669-679 51-61 (70)
155 2cor_A Pinch protein; LIM doma 24.7 41 0.0014 27.5 2.6 39 646-695 14-52 (79)
156 1m3v_A FLIN4, fusion of the LI 24.1 47 0.0016 29.4 3.0 49 648-696 33-81 (122)
157 2kwj_A Zinc finger protein DPF 23.9 6.8 0.00023 35.1 -2.5 45 648-692 59-107 (114)
158 1x4l_A Skeletal muscle LIM-pro 23.7 51 0.0018 26.0 3.0 38 648-694 6-45 (72)
159 3a1b_A DNA (cytosine-5)-methyl 23.6 49 0.0017 31.8 3.2 35 644-682 76-113 (159)
160 2l4z_A DNA endonuclease RBBP8, 22.2 31 0.001 31.0 1.4 39 647-695 61-99 (123)
161 2d8x_A Protein pinch; LIM doma 22.2 42 0.0014 26.4 2.1 31 648-680 32-62 (70)
162 1g47_A Pinch protein; LIM doma 21.8 56 0.0019 26.0 2.8 41 646-695 10-50 (77)
163 1wyh_A SLIM 2, skeletal muscle 20.8 56 0.0019 25.7 2.6 11 649-659 7-17 (72)
164 3o7a_A PHD finger protein 13 v 20.8 9.8 0.00033 29.4 -1.9 42 651-692 7-51 (52)
165 3pwf_A Rubrerythrin; non heme 20.4 35 0.0012 32.7 1.5 24 663-693 139-162 (170)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=126.71 Aligned_cols=77 Identities=29% Similarity=0.566 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHhhhccCCCcccCCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 618 VSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 618 vs~GlSeE~I~kllk~~ky~~~e~~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+++++.|.++... ++ .........+..|+||+++|..++.++.|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus 13 ~~~~~s~~~i~~lp~~-~~-~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEI-LV-TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEE-EC-CTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCe-ee-cccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3467888888775543 33 22223345677899999999998889999999999999999999999999999998764
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=114.57 Aligned_cols=54 Identities=35% Similarity=0.888 Sum_probs=48.8
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
....+..|+||+++|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345577899999999999889999999999999999999999999999998764
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.9e-14 Score=116.29 Aligned_cols=54 Identities=31% Similarity=0.912 Sum_probs=49.1
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+...|+||+++|..++.++.|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345667899999999999889999999999999999999999999999998865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=111.67 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=48.8
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 642 ~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
........|+||++.|..++.++.++|+|.||..||.+|++.+..||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3455667899999999988888999999999999999999999999999998753
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.40 E-value=1.3e-13 Score=107.98 Aligned_cols=51 Identities=37% Similarity=0.987 Sum_probs=46.6
Q ss_pred CCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
++...|+||+++|..++.+..++ |+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888897 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=2e-13 Score=114.30 Aligned_cols=54 Identities=33% Similarity=0.815 Sum_probs=48.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
.......|+||++.|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345667899999999998888899999999999999999999999999998753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=1.6e-12 Score=116.28 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=40.9
Q ss_pred CCCcccccccccCCCC---------------ceEEeCCCChhcHHHHHHHHh-----cCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge---------------~V~~LpCGH~FH~~CI~qWL~-----qknsCPICRk~LL 695 (697)
.++.|+||+++|..+. .+..++|+|.||..||.+||. .+..||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997653 344779999999999999994 5678999998763
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.5e-12 Score=101.76 Aligned_cols=51 Identities=29% Similarity=0.666 Sum_probs=44.1
Q ss_pred CCCCcccccccccCCCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.....|+||+++|...+ .+..++|+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999997643 4677899999999999999999999999999764
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=105.09 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+...|+||++.|.+. +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999864 345788999999999999999999999999998753
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=109.39 Aligned_cols=52 Identities=31% Similarity=0.854 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCC-----------CCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTD-----------GDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~-----------ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..+++.|+||+++|.. ++.++.+ +|+|.||.+||++||+.+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3456778888888854 3445566 59999999999999999999999999864
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=1.8e-12 Score=106.10 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 644 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
..++..|+||++.|.+. +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34567899999999763 556788999999999999999999999999998753
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3e-12 Score=105.79 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...+...|+||++.+.+. +.++|||.||..||.+|+..+..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345567899999999776 78899999999999999999999999999864
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.9e-12 Score=103.20 Aligned_cols=51 Identities=25% Similarity=0.530 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+...|+||++.|.+. +.+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345667899999999876 565 999999999999999999999999998753
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.21 E-value=8.5e-12 Score=112.54 Aligned_cols=51 Identities=27% Similarity=0.642 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCC---------------ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 644 PSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge---------------~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
...++.|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+.+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456788999999998641 367789999999999999999999999999974
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=4.8e-12 Score=101.15 Aligned_cols=50 Identities=28% Similarity=0.659 Sum_probs=43.8
Q ss_pred CCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
+...|+||++.|... +.+..++|||.||..||.+|++.+..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 457899999999863 45678899999999999999999999999999875
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=104.02 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=45.6
Q ss_pred CCCCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHHhcC---CCCcCCCCCcC
Q 005412 642 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL 695 (697)
Q Consensus 642 ~~~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL~qk---nsCPICRk~LL 695 (697)
+...+...|+||++.|.+.+. .+.++|||.||..||.+|++.+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345566889999999998654 5788999999999999999976 78999999764
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=104.38 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.......|+||++.|.++ +.++|||.||..||.+|+.....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344567899999999776 67899999999999999999999999999863
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=1e-11 Score=101.13 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
....|+||++.+.++ ++.++|||.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 457899999998753 577899999999999999999999999998764
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=102.53 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC--CCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk--nsCPICRk~LL 695 (697)
...+...|+||++.|.++ +.++ |||.||..||.+|++.+ ..||+||+.++
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345667899999999987 7798 99999999999999965 68999999764
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.8e-12 Score=102.91 Aligned_cols=50 Identities=40% Similarity=0.900 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+...|+||++.+.+ +.++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34556789999999876 788999999999999999999999999987753
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=99.58 Aligned_cols=51 Identities=33% Similarity=0.582 Sum_probs=43.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPICRk~LLp 696 (697)
...+...|+||++.|.+. +.++|||.||..||.+|++ .+..||+||+.+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345667899999999876 7789999999999999997 45689999998753
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.2e-11 Score=114.93 Aligned_cols=46 Identities=37% Similarity=0.908 Sum_probs=41.8
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
+..|+||++.|.++ +.++|||.||..||..|+..+..||+||+.+.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35699999999876 78899999999999999999999999999764
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=104.01 Aligned_cols=53 Identities=34% Similarity=0.727 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCC-----ChhcHHHHHHHHhcC--CCCcCCCCCcC
Q 005412 642 EIPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICKTTGL 695 (697)
Q Consensus 642 ~~~~~~e~C~ICLEefe~ge~V~~LpCG-----H~FH~~CI~qWL~qk--nsCPICRk~LL 695 (697)
....+...|.||+++|..++.+ ++||+ |.||.+||++||..+ .+||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3445667899999999877666 58996 999999999999976 48999999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.1e-11 Score=97.49 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 696 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LLp 696 (697)
..+...|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 44567899999999887 5689999999999999995 56789999998753
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=5.8e-11 Score=99.58 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc------CCCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q------knsCPICRk~LL 695 (697)
...+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 345567899999999887 68899999999999999997 678999999864
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.10 E-value=5.1e-11 Score=99.60 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
..+...|+||++.|.++ +.++|||.||+.||.+|+.. +..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34567899999999887 77899999999999999997 788999999864
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=94.04 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=39.4
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 690 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPIC 690 (697)
...+...|+||++.|.++ +.++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999999987 7789999999999999998 45689998
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.2e-11 Score=98.65 Aligned_cols=50 Identities=32% Similarity=0.653 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc------CCCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q------knsCPICRk~LL 695 (697)
...+...|+||++.|.+. +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345667899999999876 67899999999999999987 788999999765
No 29
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.07 E-value=1.7e-11 Score=112.70 Aligned_cols=52 Identities=27% Similarity=0.656 Sum_probs=2.8
Q ss_pred CCCCCCcccccccccCCC-------------C--ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 643 IPSDEEPCCICQEEYTDG-------------D--NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~g-------------e--~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
....++.|+||+++|... + .+..++|+|.||..||.+||+.+.+||+||++.
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ECCCC--------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 345678999999999763 1 233458999999999999999999999999874
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.06 E-value=5.8e-11 Score=104.80 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL 695 (697)
...|+||++.|.++ +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 46799999999876 66 8999999999999999987 69999999864
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=100.76 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=43.3
Q ss_pred CCCCCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412 642 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG 694 (697)
Q Consensus 642 ~~~~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk--nsCPICRk~L 694 (697)
+...+...|+||++.|.++ +.++ |||.||..||..|+... ..||+||+.+
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3445678899999999987 7889 99999999999999854 5899999986
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.05 E-value=2.9e-11 Score=100.84 Aligned_cols=50 Identities=34% Similarity=0.611 Sum_probs=43.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-------CCCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-------knsCPICRk~LL 695 (697)
...+...|+||++.|.++ +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678899999999887 66899999999999999986 668999999874
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=102.12 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=41.2
Q ss_pred CCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46799999999876 566 89999999999999999999999999764
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=1.1e-10 Score=103.87 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
+...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 457899999999876 666 99999999999999999999999999865
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=9.8e-11 Score=105.65 Aligned_cols=51 Identities=29% Similarity=0.675 Sum_probs=44.7
Q ss_pred CCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.+...|+||++.|.++ +.++.++|||.||..||.+||+.+..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3567899999999764 55688899999999999999999999999999765
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=90.70 Aligned_cols=45 Identities=33% Similarity=0.887 Sum_probs=38.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 690 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPIC 690 (697)
...+...|+||++.|.++ +.++|||.||..||.+|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345667899999999887 6789999999999999954 56789998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=105.17 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=40.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LL 695 (697)
...|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 46799999999977 7889999999999999998554 8999999874
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=2.8e-10 Score=108.42 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
+...|+||++.|.++ +.+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 346799999999875 555 99999999999999997 778999999874
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3.5e-10 Score=100.23 Aligned_cols=45 Identities=33% Similarity=0.606 Sum_probs=39.9
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC---CCcCCCCCcC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL 695 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn---sCPICRk~LL 695 (697)
..|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 5699999999877 6689999999999999999764 8999999764
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=4.6e-10 Score=90.98 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=40.9
Q ss_pred CCCccccccc-ccCCCCce-EEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 646 DEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLE-efe~ge~V-~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
++..|+||++ .|..+... +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3577999999 78776433 45799999999999999875 467999999875
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=4.9e-10 Score=106.29 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=40.8
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 696 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LLp 696 (697)
..|+||++.|.++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 5699999999887 7799999999999999999764 79999998753
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.91 E-value=7.6e-10 Score=95.43 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..+...|+||++.|.++ ++++|||.||+.||.+||..+.+||+||+.+.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34568899999999998 88999999999999999998899999998764
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.91 E-value=5.1e-10 Score=101.27 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LL 695 (697)
...+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||+.+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 445567899999999877 7789999999999999999765 8999999865
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=2.5e-10 Score=102.40 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCc
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 694 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~L 694 (697)
.++..|+||++.|.++ +.|+|||.||..||.+|+.. +..||+||+.+
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 3457799999999887 78899999999999999986 67899999976
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=6.7e-10 Score=100.17 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..+...|+||++.|... ..++.++|||.||..||++||+.+.+||+||+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34567899999999753 34578899999999999999999999999999875
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=93.45 Aligned_cols=50 Identities=24% Similarity=0.633 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 694 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--nsCPICRk~L 694 (697)
..+..+.|.||++.+..++ ....|+|.||..||.+||+.+ .+||+||+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 3456688999999998763 444899999999999999977 8899999875
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.86 E-value=1.1e-09 Score=97.48 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..+...|+||++.|.++ ++++|||.||+.||.+||..+.+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34567899999999999 88999999999999999998889999999864
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.85 E-value=1.5e-09 Score=96.27 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..++..|+||++.|+++ ++++|| |.||+.||.+||..+.+||+||+++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34567899999999999 889999 99999999999998889999999875
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.83 E-value=1.4e-09 Score=97.61 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=41.2
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
...|+||++.|.++ +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 46799999999876 67899999999999999997 778999999864
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=2.8e-09 Score=107.29 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL 695 (697)
......|+||++.|.++ ++++|||.||+.||..||... .+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999999999 889999999999999999864 45999999874
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.77 E-value=2.3e-09 Score=87.72 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=40.8
Q ss_pred CCCcccccccccCCCCceEEe--CCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L--pCGH~-FH~~CI~qWL~qknsCPICRk~LL 695 (697)
++..|.||++.+.+. +.+ ||||. ||..|+..|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999987765 555 99999 899999999999899999999874
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3.2e-09 Score=115.00 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=41.3
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LL 695 (697)
...|+||++.+.+. +.++|||.||..||..|+. .+..||+||+.+.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46899999998765 8899999999999999999 6889999999764
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.73 E-value=1.2e-09 Score=102.59 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCc
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG 694 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~L 694 (697)
...+...|+||++.|.++ +.++|||.||..||.+|+.... .||+||+++
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345667899999999988 7789999999999999998765 899999864
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.72 E-value=3.7e-09 Score=86.28 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=40.9
Q ss_pred CCCCcccccccccCCCCceEEe--CCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~L--pCGH~-FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.....|.||++.+.+. ..+ ||||. ||..|+.+|++....||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456799999987665 455 99999 999999999998889999999874
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=2.1e-09 Score=85.41 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=39.2
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.+...|+||++.|.++ +.|+|||.||..||..| +..||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4567799999999987 78899999999999884 678999999764
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.71 E-value=8.5e-09 Score=88.02 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCCCCceEEe--CCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
..++..|+||++.+...+. ..+ +|||.||..||.+|+.. ...||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4566789999999865332 333 59999999999999864 567999999764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2.3e-09 Score=96.85 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=39.4
Q ss_pred CCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46799999999887 777 9999999999999998 78999998764
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=8.5e-09 Score=90.25 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC------CCCcC--CCCC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT 693 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk------nsCPI--CRk~ 693 (697)
.....|+||++.|.++ ++++ |||.||+.||.+||... ..||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999988 8885 99999999999999864 48999 9865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=8.3e-09 Score=86.42 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=37.3
Q ss_pred CCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL 695 (697)
+..|.||++.+.+. +.++|||. ||..|+..| ..||+||+.+.
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 35799999998775 78899999 999999999 88999999764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=96.29 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 695 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL 695 (697)
...+...|+||++.|.++ +.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 445678899999999887 778999999999999999865 48999998764
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.8e-08 Score=97.49 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL 695 (697)
......|+||++.|.++ ++++|||.||+.||..||... .+||+||.++.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34567899999999998 888999999999999999864 46999998764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=5.7e-08 Score=81.29 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.5
Q ss_pred CcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
..|+||++.+.+. +.++|||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4699999998776 77899999 99999964 3789999997753
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=3.7e-08 Score=105.04 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCCceE-----EeCCCChhcHHHHHHHHhcC-----------CCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLG-----ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~-----~LpCGH~FH~~CI~qWL~qk-----------nsCPICRk~LL 695 (697)
.+...+|+||++.+.....+. -.+|+|.||..||.+||+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 446678999999998743332 23799999999999999842 46999999764
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.4e-07 Score=78.20 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=38.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
...+...|.||++.+.+. +.+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999987665 88899999 99999984 4789999998753
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=6.9e-08 Score=83.89 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--------CCCcC--CCCC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT 693 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--------nsCPI--CRk~ 693 (697)
+...|.||++++..++.+..++|||.||.+||.++++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999876444445799999999999999732 36999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.36 E-value=1.4e-07 Score=77.00 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred CcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 648 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..|+||++.++++ +++ +|||+|++.||.+||+.+.+||++++++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999987 777 89999999999999998888999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=1.3e-07 Score=80.60 Aligned_cols=41 Identities=29% Similarity=0.716 Sum_probs=35.8
Q ss_pred CcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL 695 (697)
..|.||++.+.+. +.+||||. ||..|+..| ..||+||+.+.
T Consensus 19 ~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 5699999988765 88899999 999999987 38999999764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.30 E-value=2e-07 Score=96.32 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcC--CCCcC--CCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qk--nsCPI--CRk~LL 695 (697)
....|+||++.|.++ +. +.|||.||+.||.+|+... ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 446799999999888 55 4999999999999999864 46999 998653
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.28 E-value=3.9e-07 Score=74.20 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCCceEEeCCC--C---hhcHHHHHHHHhc--CCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCG--H---~FH~~CI~qWL~q--knsCPICRk~LL 695 (697)
.+...|.||+++.. +.+ .+||. | .||..||.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 333 57855 4 8999999999985 568999998764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.2e-07 Score=99.30 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=38.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL 695 (697)
++..|+||++.+... +.++|||. ||..||..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457899999999776 88899999 999999998 78999999764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=2.6e-05 Score=69.86 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=37.2
Q ss_pred cccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
.|.+|--.+..- .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 488887777653 467799999999999999875 578999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.39 E-value=8.1e-05 Score=75.79 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC--CCcCCCCC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTT 693 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn--sCPICRk~ 693 (697)
....|.||.+....+ ..+-.|+|.||..|+.+|++.+. .||.|++.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 478899999999876 34445999999999999998654 89999985
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.84 E-value=0.018 Score=51.12 Aligned_cols=46 Identities=33% Similarity=0.632 Sum_probs=37.0
Q ss_pred CCCCcccccccccCCCCceEEeCC-CChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpC-GH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
-+-..|..|.-..+ ..+.| .|.+|..|+...|.....||||+++|.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 35577999987644 34555 599999999999999999999999764
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.62 E-value=0.038 Score=47.97 Aligned_cols=35 Identities=14% Similarity=0.456 Sum_probs=26.9
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW 680 (697)
++..|.||++.|...-....+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35679999987544333445899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.53 E-value=0.078 Score=43.87 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=36.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----CCcCCCCCcCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP 696 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----sCPICRk~LLp 696 (697)
......|.||.+. ++.+..-.|...||..|++..|.... .||.|+....+
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3445679999853 44444447999999999998887543 59999876544
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.78 E-value=0.26 Score=53.29 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=31.5
Q ss_pred CcccccccccCCCCceEEeCCCChhcHH--HHHHHHhcC--CCCcCCCCCcC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTN--CIKQWLMQK--NLCPICKTTGL 695 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~--CI~qWL~qk--nsCPICRk~LL 695 (697)
..|+|-+..+..+ ++-..|.|.-|.+ -+.+...++ -.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5699988887776 5666899995544 344433333 34999998764
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.46 E-value=0.13 Score=41.49 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=35.0
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCC
Q 005412 645 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 693 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~ 693 (697)
.+...|.||...+.+...++.- .|...||..|+.--.. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567799999998655444443 6999999999875432 34569999653
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=84.04 E-value=0.53 Score=50.75 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=32.0
Q ss_pred CcccccccccCCCCceEEeCCCCh--hcHHHHHHHHhcCC--CCcCCCCCcC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 695 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~--FH~~CI~qWL~qkn--sCPICRk~LL 695 (697)
..|+|-+..+..+ ++-..|.|. |-..-+.+...++. .||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 5699988888776 566689999 55444444444433 4999998764
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.67 E-value=0.47 Score=38.34 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=34.0
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCCCc
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTG 694 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk~L 694 (697)
...+..|.||... ++.+..-.|...||..|+..-|... =.||.|++..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 4456789999873 3333333699999999999865432 2599998754
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.24 E-value=0.48 Score=56.76 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.-+...|+|-++-+.++ ++++.| +.|-+.+|.+||..+.+||+-|.++.
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 34567799999999999 899997 58999999999999999999998764
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.71 E-value=0.86 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=26.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW 680 (697)
....++.|.||-- |...+....-.|+-.||..|+++-
T Consensus 11 ~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 3456788999863 445543444469999999999996
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.54 E-value=0.52 Score=36.31 Aligned_cols=44 Identities=25% Similarity=0.641 Sum_probs=30.7
Q ss_pred cccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
.|.||...-..++.+..-.|...||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998765444334444799999999997655432 24999975
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.00 E-value=1.4 Score=37.19 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCCc
Q 005412 646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTTG 694 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~L 694 (697)
....| ||...+.....++.- .|...||..|+.--.. .+..||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 33445 999988644444333 6999999999964322 345799998754
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.40 E-value=0.31 Score=40.54 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhc----CCCCcCCCCCc
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ----KNLCPICKTTG 694 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~q----knsCPICRk~L 694 (697)
..+...|.||..... ++.++.- .|.-.||..|+..-+.. +-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 344566999988764 3333333 69999999999865542 34599997654
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.90 E-value=0.35 Score=39.06 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=33.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk~LL 695 (697)
...+..|.||.+. ++.+..-.|...||..|+..-|... =.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456779999863 3333333699999999998755532 24999987654
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.20 E-value=0.93 Score=37.83 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=32.1
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHH---------hcCCCCcCCCCCcCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL---------MQKNLCPICKTTGLP 696 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL---------~qknsCPICRk~LLp 696 (697)
..| ||...+..+.-|..-.|...||..|+.--. ..+..||.|+..-.+
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 445 899887643333333699999999985321 246789999865443
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.25 E-value=6.6 Score=34.11 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhc
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ 683 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~q 683 (697)
......|.+|.+.+++..-|.+- .=.|+||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34567899999999998655433 25799999999999984
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=72.24 E-value=1.1 Score=34.90 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=30.7
Q ss_pred cccccccccCCCCceEEe--CCCChhcHHHHHHHH----hcCCCCcCCC
Q 005412 649 PCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL----MQKNLCPICK 691 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL----~qknsCPICR 691 (697)
.|.||...+.+++.++.- .|.-.||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999998765554443 488899999986422 2567899996
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.87 E-value=1 Score=39.60 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc---CCCCcCCCCC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTT 693 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q---knsCPICRk~ 693 (697)
+...| ||-.....+..|..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33456 89877665544444479999999998763332 3469999854
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.81 E-value=0.99 Score=40.11 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=29.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 682 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~ 682 (697)
...+..|.||.+.-+..+.+..-.|...||..||...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 346778999998744433355558999999999988764
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.17 E-value=0.32 Score=38.47 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=32.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----CCcCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 692 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----sCPICRk 692 (697)
...+..|.||.+. ++.+..-.|...||..|+.+-|.... .||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456779999974 34444447999999999987555322 4988864
No 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=69.76 E-value=0.35 Score=40.11 Aligned_cols=51 Identities=29% Similarity=0.441 Sum_probs=34.3
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHH----hcCCCCcCCCCCcCC
Q 005412 645 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL----MQKNLCPICKTTGLP 696 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL----~qknsCPICRk~LLp 696 (697)
.....| ||...+.+++.++.- .|...||..|+.--- ..+..||.|+....+
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 344568 798887665444433 699999999987532 234569999876554
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.81 E-value=1.5 Score=38.28 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=34.0
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----CCcCCCCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTT 693 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----sCPICRk~ 693 (697)
....+..|.||... ++.+..-.|--.||..|+.+=|.... .||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34566789999974 44444446999999999987665422 49999853
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.02 E-value=4.9 Score=32.96 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=32.2
Q ss_pred CCCCCcccccccccCCCCceEEe--CCCChhcHHHHHHHHh----------cCCCCcCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM----------QKNLCPICKT 692 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~----------qknsCPICRk 692 (697)
......|.+|...+...+.++.- .|.-.||..|+.---. .+-.||.|++
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 34567899999998776555444 6999999999854321 1345888853
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.25 E-value=8.9 Score=34.17 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=23.8
Q ss_pred CCCccccccccc------CCCCceEEeCCCChhcHHHHH
Q 005412 646 DEEPCCICQEEY------TDGDNLGILDCGHDFHTNCIK 678 (697)
Q Consensus 646 ~~e~C~ICLEef------e~ge~V~~LpCGH~FH~~CI~ 678 (697)
....|.+|+..- ..++.+..-.|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346799998763 223445555799999999995
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.12 E-value=2 Score=36.22 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEe--CCCChhcHHHHHHHHh---------cCCCCcCCCCCc
Q 005412 646 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM---------QKNLCPICKTTG 694 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~---------qknsCPICRk~L 694 (697)
....| ||-.....+.-|..= .|...||..|+.---. .+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34557 898875554333334 5999999999864221 355699997643
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.41 E-value=0.73 Score=40.25 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
...+...|.||...-...+.|..=.|...||..|+.+=|... =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 344567799999875433233333699999999998544432 24999964
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=57.72 E-value=0.99 Score=36.86 Aligned_cols=45 Identities=24% Similarity=0.642 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
..+..|.||.+. ++.+..-.|.-.||..|+..-|... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999974 4434444699999999998655432 24999965
No 99
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.65 E-value=4.5 Score=35.49 Aligned_cols=44 Identities=30% Similarity=0.739 Sum_probs=28.0
Q ss_pred CCcccccccccCCCCceEEeC--CC-ChhcHHHHHHHHhc----CCCCcCCCCCc
Q 005412 647 EEPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 694 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~Lp--CG-H~FH~~CI~qWL~q----knsCPICRk~L 694 (697)
...| ||..... ++-|..=. |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3446 9998653 33222224 66 689999998 443 34599998754
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=57.41 E-value=1.2 Score=35.63 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=32.0
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCCC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 693 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk~ 693 (697)
..+..|.||... ++.+..-.|.-.||..|+.+-|... -.||.|...
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 346789999874 4444444799999999998755432 249988653
No 101
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.47 E-value=5.7 Score=33.16 Aligned_cols=33 Identities=30% Similarity=0.737 Sum_probs=25.9
Q ss_pred CCCCCcccccccccCCCCceEEeCC-CChhcHHHHHHH
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQW 680 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpC-GH~FH~~CI~qW 680 (697)
..+...|.||.++ -.++.+.| +-+||..|.+.-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 3455679999998 23688899 889999997764
No 102
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.27 E-value=3.1 Score=38.82 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=25.6
Q ss_pred CCCCcccccccccC-C-CCceEEeCCCChhcHHHHH
Q 005412 645 SDEEPCCICQEEYT-D-GDNLGILDCGHDFHTNCIK 678 (697)
Q Consensus 645 ~~~e~C~ICLEefe-~-ge~V~~LpCGH~FH~~CI~ 678 (697)
.....|.+|+..|. . +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46788999999994 2 3234556899999999954
No 103
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.19 E-value=1.4 Score=36.52 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=31.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKT 692 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPICRk 692 (697)
..+...| ||...+..+.-|..-.|...||..|+.---. .+-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3345567 9988765332233336999999999875322 3456999975
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.68 E-value=2.6 Score=37.65 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=30.6
Q ss_pred CcccccccccCC-CCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 648 EPCCICQEEYTD-GDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 648 e~C~ICLEefe~-ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
..|.||.+.-.+ ++.+..-.|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 468899875333 3233333699999999998766532 25999985
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.78 E-value=6.2 Score=32.85 Aligned_cols=44 Identities=27% Similarity=0.686 Sum_probs=28.0
Q ss_pred CCCcccccccccCCCCceEEe-C--CC-ChhcHHHHHHHHhc----CCCCcCCCCCc
Q 005412 646 DEEPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 694 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L-p--CG-H~FH~~CI~qWL~q----knsCPICRk~L 694 (697)
+...| ||..... ++ ++.- . |. ..||..||. |.. +-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456 8988643 32 2222 4 66 689999998 443 33599998653
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.50 E-value=15 Score=34.58 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=32.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-----------cCCCCcCCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------QKNLCPICKTT 693 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-----------qknsCPICRk~ 693 (697)
...++.|.||.+- ++.+-.=.|-..||..||.+-|. ..=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456789999974 43333336999999999997653 12249999854
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=49.45 E-value=6.9 Score=31.42 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=33.1
Q ss_pred CCCCCcccccccccCC--CCceEEeCCCChhcHHHHHHHHh-------cCCCCcCCCCC
Q 005412 644 PSDEEPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLM-------QKNLCPICKTT 693 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~--ge~V~~LpCGH~FH~~CI~qWL~-------qknsCPICRk~ 693 (697)
...+..|.||...... ++.+..-.|.-.||..|+..-|. ..=.|+.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456789999987543 32233336999999999986432 12359988654
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=49.30 E-value=6.8 Score=34.86 Aligned_cols=47 Identities=26% Similarity=0.508 Sum_probs=33.7
Q ss_pred CCcccccccccCCCCceEEe--CCCChhcHHHHHHHHh----------cCCCCcCCCCC
Q 005412 647 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM----------QKNLCPICKTT 693 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~----------qknsCPICRk~ 693 (697)
...|.||...|.+...++.- .|.-.||..|+.---. .+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 46799999998765554444 5999999999863211 34569999754
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.44 E-value=3.6 Score=41.73 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=27.9
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-----CCCCcCCCCC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKTT 693 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-----knsCPICRk~ 693 (697)
...|.||...-..++.+.+=.|...||..|+.+=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888875333433434379999999999965553 1249999764
No 110
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.96 E-value=24 Score=31.09 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=37.3
Q ss_pred CCCcccccccccCCCC----ceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGD----NLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge----~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL 695 (697)
....|.||=+++.... .|..-.|+--.|+.|+.-=.+. ...||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4578999999976432 2344479988999999875554 567999998764
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=44.78 E-value=2.1 Score=36.34 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=28.1
Q ss_pred cccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-----CCCcCCCC
Q 005412 649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKT 692 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-----nsCPICRk 692 (697)
.|.||...-..++.+..=.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577777654333222222699999999999766532 25999986
No 112
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.35 E-value=4.3 Score=38.67 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCCcccccccccC--CCCceEEeCCCChhcHHHHHHHHhcCC--CCcCCCC
Q 005412 646 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 692 (697)
Q Consensus 646 ~~e~C~ICLEefe--~ge~V~~LpCGH~FH~~CI~qWL~qkn--sCPICRk 692 (697)
.+..|.+|+..|. .+....+..|.|.+|..|- .|+.... .|-+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5788999999875 3434566689999999997 2332221 2666643
No 113
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.87 E-value=16 Score=30.28 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=28.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
......|..|-+.+...+.+. .-+..||..| ..|-.|++.|.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcC
Confidence 345577999999887665544 3466788777 45777776654
No 114
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=42.73 E-value=7 Score=31.78 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=29.3
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPIC 690 (697)
..|--|+..|.+......-.|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998654222344799999999943322344679988
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.31 E-value=4.3 Score=34.35 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=30.0
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-----CCCCcCCCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKT 692 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-----knsCPICRk 692 (697)
..|.||...-..++.+..=.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478899865333333333369999999999865543 225999975
No 116
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.81 E-value=13 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=25.6
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...|..|-+.+...+.+. .-+..||.+| ..|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 456888888877655443 3466777766 45777777654
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.73 E-value=4.1 Score=33.75 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=28.4
Q ss_pred cccccccccCCCCceEEe-CCCChhcHHHHHHHHhc-----CCCCcCCCCC
Q 005412 649 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-----KNLCPICKTT 693 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~q-----knsCPICRk~ 693 (697)
.|.||...-..+ .+..- .|...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567777543222 22222 69999999999865553 2259999864
No 118
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.87 E-value=7.2 Score=41.55 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCC-ceEEeCCCChhcHHHHHHHHh-------cCCCCcCCCCCc
Q 005412 645 SDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 694 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~-------qknsCPICRk~L 694 (697)
.....|.+|...|..-. .-.+-.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34567999999987532 123447999999999987653 134588886544
No 119
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=18 Score=29.96 Aligned_cols=40 Identities=28% Similarity=0.599 Sum_probs=27.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
....|.-|-+.+..++.+..+ +..||.+| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~--~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL--DKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET--TEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEEC--Cccccccc--------CCcCcCCCCcC
Confidence 456799999888766555443 56778776 55778877653
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.02 E-value=3 Score=36.91 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=28.8
Q ss_pred cccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
.|.||...-.....+..-.|...||..|+.+=|... -.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 577887764433333333699999999998755432 24888854
No 121
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.68 E-value=12 Score=33.67 Aligned_cols=43 Identities=30% Similarity=0.670 Sum_probs=27.2
Q ss_pred CCCCCCcccccccccCCCCceEEeC---CCChhcHHHHHHHHhcCC----CCcCCC
Q 005412 643 IPSDEEPCCICQEEYTDGDNLGILD---CGHDFHTNCIKQWLMQKN----LCPICK 691 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~V~~Lp---CGH~FH~~CI~qWL~qkn----sCPICR 691 (697)
....++.|.||.+. + ++..-. |-..||..|+. |.... .||.|+
T Consensus 11 ~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34566789999842 3 333333 88999999997 54322 377443
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.69 E-value=17 Score=32.48 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=23.4
Q ss_pred CcccccccccC-------CCCceEEeCCCChhcHHHHHHH
Q 005412 648 EPCCICQEEYT-------DGDNLGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 648 e~C~ICLEefe-------~ge~V~~LpCGH~FH~~CI~qW 680 (697)
..|.||+..-. .++.+....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987642 1233445579999999999865
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.43 E-value=25 Score=29.74 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 643 IPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
.+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 44556789999999986432 233379999999997654
No 124
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.93 E-value=28 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCCCCccccccccc-CCCCceEEe-CCCChhcHHHHHHHHhc--CCCCcCCCC
Q 005412 644 PSDEEPCCICQEEY-TDGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKT 692 (697)
Q Consensus 644 ~~~~e~C~ICLEef-e~ge~V~~L-pCGH~FH~~CI~qWL~q--knsCPICRk 692 (697)
...+..|.||.+.- .+++.+..- .|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44567899998764 222333333 69999999999854321 224888864
No 125
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.73 E-value=20 Score=30.90 Aligned_cols=50 Identities=18% Similarity=0.462 Sum_probs=31.8
Q ss_pred CCCCCcccccccccC-CCCceEEe-CCCChhcHHHHHHHHhc--CCCCcCCCCC
Q 005412 644 PSDEEPCCICQEEYT-DGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKTT 693 (697)
Q Consensus 644 ~~~~e~C~ICLEefe-~ge~V~~L-pCGH~FH~~CI~qWL~q--knsCPICRk~ 693 (697)
...+..|.||...-. ..+.+..- .|.-.||..|+..-+.- .=.||.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 345678999997642 22222222 69999999999864321 2249988653
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.44 E-value=4 Score=37.54 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHHhcCCCCcCC
Q 005412 645 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPIC 690 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL~qknsCPIC 690 (697)
.....|.+|...|..-.. -..-.||.+||..|..........|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 344679999999975322 2334799999999977665555556665
No 127
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.06 E-value=5.7 Score=32.08 Aligned_cols=38 Identities=16% Similarity=0.446 Sum_probs=27.6
Q ss_pred CCcccccccccCCCCc---eEEeC--CCChhcHHHHHHHHhcC
Q 005412 647 EEPCCICQEEYTDGDN---LGILD--CGHDFHTNCIKQWLMQK 684 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~---V~~Lp--CGH~FH~~CI~qWL~qk 684 (697)
...|+-|.-.++..+- +.... |++.||..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4678888888876542 33334 89999999999996643
No 128
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.84 E-value=24 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
.....|..|-+.+... .+..-+..||.+| ..|-.|++.|
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKLRDRHRHPEC--------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEECSSCEECTTT--------TSCSSSCCCH
T ss_pred CCCCccccCCCCccCc---EEEECcceeCcCc--------CeeCCCCCCC
Confidence 3456788888887753 2334567788777 4577777654
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=32.78 E-value=33 Score=31.89 Aligned_cols=47 Identities=28% Similarity=0.527 Sum_probs=31.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHH------hc-----CCCCcCCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL------MQ-----KNLCPICKTT 693 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL------~q-----knsCPICRk~ 693 (697)
...+..|.||.+- ++.+-.=.|-..||.+||.+-+ +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4455679999974 3222222699999999999752 21 1259999764
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.38 E-value=13 Score=29.99 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=29.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcH-HHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHT-NCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~-~CI~qWL~qknsCPICRk~LL 695 (697)
.-..|..|...+.... ....=+..||. .|..+- ....|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCcee
Confidence 4567888988877652 22334667888 587653 3456888876554
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.99 E-value=24 Score=30.37 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=26.3
Q ss_pred CCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 644 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
..+...|.+|...|..-.. -..-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3455679999999986432 223379999999997653
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.63 E-value=17 Score=32.65 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=10.4
Q ss_pred hcHHHHHHHHh
Q 005412 672 FHTNCIKQWLM 682 (697)
Q Consensus 672 FH~~CI~qWL~ 682 (697)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 133
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.62 E-value=25 Score=29.68 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=26.9
Q ss_pred CCCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 643 IPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 643 ~~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
.+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34456789999999975432 223379999999996543
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.31 E-value=23 Score=29.60 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=22.0
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
....|..|-+.+.. + .+..-+..||.+| ..|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-P--FLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS-C--EEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecc-e--EEEECCccccccC--------CccCCCCCCCC
Confidence 34567777777642 2 2223456666665 45666666553
No 135
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.09 E-value=17 Score=32.51 Aligned_cols=11 Identities=55% Similarity=1.428 Sum_probs=10.4
Q ss_pred hcHHHHHHHHh
Q 005412 672 FHTNCIKQWLM 682 (697)
Q Consensus 672 FH~~CI~qWL~ 682 (697)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 136
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.08 E-value=30 Score=28.78 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
.....|..|-+.+... .+..-+..||.+| ..|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA---VVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSC---CEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEeccc---EEEECCceECccC--------CEecCCCCCCC
Confidence 3456799998887752 2334667788877 55888887664
No 137
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.47 E-value=23 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=26.8
Q ss_pred CCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 644 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4455679999999985432 223379999999997654
No 138
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.37 E-value=21 Score=30.72 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHH
Q 005412 645 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWL 681 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL 681 (697)
.+...|.+|...|..-.. -..-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345679999999985432 2334799999999977653
No 139
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.88 E-value=11 Score=31.39 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=31.1
Q ss_pred CCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCC
Q 005412 647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 693 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~ 693 (697)
.....||...+..+..++.- .|.-.||..|+.---. .+-.||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34456998877544444333 6999999999964322 24569999753
No 140
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.86 E-value=19 Score=32.90 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=26.1
Q ss_pred CCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 645 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 645 ~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
.....|.+|...|..-.. -..-.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345679999999985432 233379999999997654
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.65 E-value=4.4 Score=32.54 Aligned_cols=41 Identities=29% Similarity=0.679 Sum_probs=26.1
Q ss_pred CCcccccccccCCCCceEEe-C--CC-ChhcHHHHHHHHhc----CCCCcCCCC
Q 005412 647 EEPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 692 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~L-p--CG-H~FH~~CI~qWL~q----knsCPICRk 692 (697)
...| ||..... + .++.- . |. ..||..|+. |.. +-.||.|++
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3445 9988642 3 23222 4 66 689999998 443 235999965
No 142
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.43 E-value=18 Score=31.08 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=30.8
Q ss_pred CCcccccccccCCC-CceEEe-CCCChhcHHHHHHHHhc--------CCCCcCCCC
Q 005412 647 EEPCCICQEEYTDG-DNLGIL-DCGHDFHTNCIKQWLMQ--------KNLCPICKT 692 (697)
Q Consensus 647 ~e~C~ICLEefe~g-e~V~~L-pCGH~FH~~CI~qWL~q--------knsCPICRk 692 (697)
+..|.||...-... +.+..- .|...||..|+..-|.. .=.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46799999864422 233333 69999999999876541 224988864
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.67 E-value=21 Score=35.22 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 647 EEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
...|.+|...|..-.. -.+-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4789999999975432 233479999999997654
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=28.65 E-value=4.7 Score=32.34 Aligned_cols=40 Identities=30% Similarity=0.718 Sum_probs=25.1
Q ss_pred CcccccccccCCCCceEEe-C--CC-ChhcHHHHHHHHhc----CCCCcCCCC
Q 005412 648 EPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 692 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~L-p--CG-H~FH~~CI~qWL~q----knsCPICRk 692 (697)
..| ||..... + .++.- . |. ..||..|+. |.. +-.||.|++
T Consensus 11 ~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345 9988643 3 22222 4 55 689999998 443 235999965
No 145
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.47 E-value=8.3 Score=43.02 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=31.7
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCC
Q 005412 646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 693 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~ 693 (697)
.....|||...+..+..++.- .|.-.||..|+.---. .+-.||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 334455999887644444444 6999999999954322 23569999753
No 146
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.65 E-value=9.3 Score=34.49 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=16.4
Q ss_pred EEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 664 GILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 664 ~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
.+..||+.|. .-+.....||.|+.+-
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 4556898882 1122345699999753
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.51 E-value=22 Score=35.43 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCc-eEEeCCCChhcHHHHHHH
Q 005412 646 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qW 680 (697)
+...|.+|...|..-.. -.+-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34689999999985432 234479999999997654
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.58 E-value=44 Score=27.07 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=25.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...|..|-+.+...+.++ ..-+..||..| ..|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccC
Confidence 357888888877554432 23466778766 45777777654
No 149
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.24 E-value=25 Score=31.27 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 682 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~ 682 (697)
.-..|..|...+..++.. .+.=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 446677887777544333 233467788888877664
No 150
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.04 E-value=34 Score=37.21 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=32.7
Q ss_pred CCCCCcccccccccCCCCceEEe--CCCChhcHHHHHHHHhc----------CCCCcCCCCC
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ----------KNLCPICKTT 693 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~q----------knsCPICRk~ 693 (697)
...+..|.||-+. ++.+.+= .|...||.+||+.++.. +=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3345679999874 3334444 69999999999999831 2248888643
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.75 E-value=32 Score=28.34 Aligned_cols=32 Identities=19% Similarity=0.463 Sum_probs=23.8
Q ss_pred CcccccccccCCCCc-eEEeCCCChhcHHHHHH
Q 005412 648 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQ 679 (697)
Q Consensus 648 e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~q 679 (697)
..|.+|...|..-.. -..-.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999985422 22337999999999754
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.44 E-value=43 Score=26.43 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 683 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q 683 (697)
-..|..|...+... . ....=+..||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQ-H-FYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTS-C-EEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcC-c-CEeeCCeEECHHHHHHHHcc
Confidence 45677777776422 1 23345667888887776653
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.36 E-value=41 Score=26.47 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=17.7
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
..|..|-+.+...+.++. .-+..||.+| ..|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCcc
Confidence 346666666554322211 1344555544 3455555544
No 154
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.73 E-value=47 Score=26.07 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.0
Q ss_pred CChhcHHHHHH
Q 005412 669 GHDFHTNCIKQ 679 (697)
Q Consensus 669 GH~FH~~CI~q 679 (697)
+..||..|..+
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 34445555433
No 155
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.69 E-value=41 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
....|.-|-+.+.. +.+ .--+..||.+| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPL--IFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCS-CCC--CCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecc-eEE--EECcceeCCCC--------CEeCCCCCccC
Confidence 34567777776662 222 23455666655 45666666553
No 156
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=47 Score=29.40 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=33.7
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp 696 (697)
..|..|...+.+........=+..||..|..+-+..+..|-.|.+.+.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111233456779999998877666689999988764
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.91 E-value=6.8 Score=35.09 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=30.2
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 692 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk 692 (697)
..|.||...-..++.+..-.|...||..|+.+=|... =.||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 3688888764444333344799999999998654432 23888864
No 158
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.73 E-value=51 Score=26.03 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=18.0
Q ss_pred CcccccccccCC--CCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412 648 EPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694 (697)
Q Consensus 648 e~C~ICLEefe~--ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L 694 (697)
..|..|-+.+.. .+.+ +..-+..||.+| ..|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBC
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcC
Confidence 446666665553 1121 122445556555 3455555544
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.64 E-value=49 Score=31.83 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=25.5
Q ss_pred CCCCCcccccccccCCCCceEEe---CCCChhcHHHHHHHHh
Q 005412 644 PSDEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLM 682 (697)
Q Consensus 644 ~~~~e~C~ICLEefe~ge~V~~L---pCGH~FH~~CI~qWL~ 682 (697)
+..+..|.||-+. .++..- .|...||.+||+.++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3446779999974 333333 4889999999999875
No 160
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.23 E-value=31 Score=31.05 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
...|.-|-+.+.....+. .-+..||.+| ..|-.|++.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCccc
Confidence 467999999887553233 3577788877 56888888763
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=42 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=13.2
Q ss_pred CcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 680 (697)
Q Consensus 648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW 680 (697)
..|..|...+.... ....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIG--FVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSC--CEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCc--cEeECCeEECHHHhhhh
Confidence 34555554444331 11123444555555443
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.80 E-value=56 Score=26.04 Aligned_cols=41 Identities=17% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695 (697)
Q Consensus 646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL 695 (697)
....|..|-+.+...+.+.. .-+..||..| ..|-.|++.|.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCC
Confidence 34678888888765443321 2355677666 45777776653
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.81 E-value=56 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=5.6
Q ss_pred cccccccccCC
Q 005412 649 PCCICQEEYTD 659 (697)
Q Consensus 649 ~C~ICLEefe~ 659 (697)
.|..|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1wyh_A 7 GCSACGETVMP 17 (72)
T ss_dssp BCSSSCCBCCS
T ss_pred CCccCCCcccc
Confidence 45555555443
No 164
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=20.76 E-value=9.8 Score=29.43 Aligned_cols=42 Identities=19% Similarity=0.528 Sum_probs=27.1
Q ss_pred cccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCCCC
Q 005412 651 CICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKT 692 (697)
Q Consensus 651 ~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPICRk 692 (697)
.||...+..+.-|..-.|.-.||..|+.---. .+-.||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 47877655322233336999999999874322 3456999875
No 165
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.37 E-value=35 Score=32.68 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=14.8
Q ss_pred eEEeCCCChhcHHHHHHHHhcCCCCcCCCCC
Q 005412 663 LGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693 (697)
Q Consensus 663 V~~LpCGH~FH~~CI~qWL~qknsCPICRk~ 693 (697)
.++..|||++-. ..-..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 345567877652 223479999864
Done!