Query 005414
Match_columns 697
No_of_seqs 253 out of 762
Neff 4.9
Searched_HMMs 13730
Date Tue Mar 26 00:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q66a2 d.218.1.3 (A:5-201) Po 100.0 1.3E-52 9.2E-57 414.8 20.5 197 14-211 1-197 (197)
2 d1q79a2 d.218.1.3 (A:19-214) P 100.0 1E-52 7.5E-57 415.1 19.0 196 15-211 1-196 (196)
3 d1q79a1 a.160.1.1 (A:215-364) 100.0 1.1E-52 8.1E-57 397.9 15.6 150 212-361 1-150 (150)
4 d2q66a1 a.160.1.1 (A:202-351) 100.0 1.7E-52 1.3E-56 396.7 14.8 150 212-361 1-150 (150)
5 d2q66a3 d.58.16.1 (A:352-529) 100.0 2.8E-31 2E-35 257.8 11.8 130 362-495 1-177 (178)
6 d1q79a3 d.58.16.1 (A:365-498) 100.0 2.1E-30 1.5E-34 241.3 10.6 125 362-488 1-133 (134)
7 d2b4va1 a.160.1.4 (A:289-471) 99.9 2.9E-24 2.1E-28 205.0 11.0 145 215-360 2-183 (183)
8 d1r89a2 d.218.1.7 (A:1-142) tR 98.4 1.3E-06 9.2E-11 80.6 12.2 109 36-168 5-114 (142)
9 d1no5a_ d.218.1.5 (A:) Hypothe 98.1 4.1E-06 3E-10 72.2 8.3 63 56-136 4-66 (100)
10 d2b4va2 d.218.1.10 (A:30-288) 97.7 4E-05 2.9E-09 76.0 8.8 84 58-158 32-123 (259)
11 d1ylqa1 d.218.1.5 (A:1-90) Put 97.5 8.5E-05 6.2E-09 63.1 7.4 32 90-121 14-46 (90)
12 d1r89a1 a.160.1.3 (A:143-257) 97.3 9.2E-05 6.7E-09 65.4 5.4 90 221-335 6-97 (115)
13 d1wota_ d.218.1.5 (A:) Unnamed 96.6 0.0014 9.9E-08 55.9 6.2 31 91-121 26-56 (98)
14 d1knya2 d.218.1.1 (A:1-125) Ka 96.0 0.0039 2.9E-07 55.3 5.7 28 91-118 32-59 (125)
15 d2bcqa3 d.218.1.2 (A:386-575) 95.8 0.039 2.8E-06 51.8 12.4 117 89-241 23-148 (190)
16 d2fmpa3 d.218.1.2 (A:149-335) 95.5 0.051 3.7E-06 50.8 11.9 132 63-241 9-151 (187)
17 d1px5a1 a.160.1.2 (A:201-346) 94.5 0.12 8.7E-06 46.9 10.8 57 216-273 3-62 (146)
18 d1jmsa4 d.218.1.2 (A:303-510) 94.1 0.29 2.1E-05 46.1 13.4 63 62-137 7-70 (208)
19 d1px5a2 d.218.1.6 (A:1-200) 2' 93.0 0.23 1.7E-05 47.1 10.3 74 36-118 9-83 (200)
20 d2pbea2 d.218.1.13 (A:1-135) A 81.9 1.2 9.1E-05 39.4 6.7 80 92-171 23-108 (135)
21 d1jqra_ d.218.1.2 (A:) DNA pol 79.5 0.43 3.1E-05 43.9 2.7 117 84-240 25-142 (174)
22 d2fcla1 d.218.1.11 (A:1-157) H 39.7 35 0.0026 29.3 7.5 71 89-168 20-95 (157)
23 d1v4aa2 d.218.1.9 (A:2-286) Gl 38.4 1E+02 0.0074 29.4 11.4 62 75-136 137-207 (285)
No 1
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.3e-52 Score=414.82 Aligned_cols=197 Identities=45% Similarity=0.749 Sum_probs=193.5
Q ss_pred CCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005414 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (697)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (697)
|+||+|+|||+++||++|++++++|+++|+++++|||+||.++|++|+++|++++++|++++++++|+++..+..++++|
T Consensus 1 ~~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~~~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~~~v 80 (197)
T d2q66a2 1 KVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKI 80 (197)
T ss_dssp CCCSSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEE
T ss_pred CcCcCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeecccc
Q 005414 94 FTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRL 173 (697)
Q Consensus 94 ~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~ 173 (697)
+|||||++|+|+|+||||+||++|.+++++ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++.+
T Consensus 81 ~~fGS~~lg~~~p~SDID~~~~~p~~~~~~-~ff~~l~~~L~~~~~v~~i~~I~~A~VPIIK~~~~gi~iDlsfa~l~~~ 159 (197)
T d2q66a2 81 FTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQP 159 (197)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEECSSSSCEEEEEETTEEEEEEEEECSSS
T ss_pred EecccccccccCCCCCcceEEecCCcCCHH-HHHHHHHHHHHhCCCCceeEEeecccccEEEEEEcCEEEEeecccccCC
Confidence 999999999999999999999999999985 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCcccccccchhhHHHHHHHhC
Q 005414 174 VVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLV 211 (697)
Q Consensus 174 ~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lV 211 (697)
.+|+++++.|+++|++||++++|||||||||++|+++|
T Consensus 160 ~~p~~l~~~~~~lL~~ld~~~~rSlNG~Rv~d~il~lV 197 (197)
T d2q66a2 160 QVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELV 197 (197)
T ss_dssp CBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcccccCHHHHhCCCcccccccccHHHHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 2
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1e-52 Score=415.12 Aligned_cols=196 Identities=45% Similarity=0.811 Sum_probs=192.6
Q ss_pred CCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEE
Q 005414 15 QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIF 94 (697)
Q Consensus 15 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~ 94 (697)
|||||+|||+++||+.|++.+.+|+++|+++++|||+||.++|++||.+|++++++|+++++.++|++++++..++++|+
T Consensus 1 ~~GvT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (196)
T d1q79a2 1 HYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIF 80 (196)
T ss_dssp CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEE
T ss_pred CCCCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeeccccc
Q 005414 95 TFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLV 174 (697)
Q Consensus 95 ~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ 174 (697)
|||||++|+|+|+||||+||++|.+++++ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++.+.
T Consensus 81 ~FGS~~lgv~~p~SDID~~~i~p~~~~~~-~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~~gi~iDlsfa~l~~~~ 159 (196)
T d1q79a2 81 TFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQT 159 (196)
T ss_dssp EEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSS
T ss_pred EeccccccccCCCCCccEEEecCCcCCHH-HHHHHHHHHHhcCCCcceEEEeccccccEEEEEEcCeeEeehhhhcccCC
Confidence 99999999999999999999999999985 99999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccccccchhhHHHHHHHhC
Q 005414 175 VREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLV 211 (697)
Q Consensus 175 ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lV 211 (697)
+|+++++.|+++|++||++++|||||||||++|+++|
T Consensus 160 ~p~~l~l~~~~lL~~ld~~~~rslNG~Rv~~~il~lV 196 (196)
T d1q79a2 160 IPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV 196 (196)
T ss_dssp BCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSS
T ss_pred CCcccccCChHHHhcCChhhhhhhccHHHHHHHHhhC
Confidence 9999999999999999999999999999999999986
No 3
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.1e-52 Score=397.94 Aligned_cols=150 Identities=58% Similarity=1.087 Sum_probs=147.2
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeeccccccc
Q 005414 212 PNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAE 291 (697)
Q Consensus 212 P~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~ 291 (697)
||.+.||.+||+||+|||+||||+|++||||||+|+||||++||+|||+++++||.+||.+|++|+||+||+|++++++.
T Consensus 1 Pn~~~Fr~~lR~IKlWAk~RGIYsn~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~ 80 (150)
T d1q79a1 1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN 80 (150)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCCCCeeccCccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 005414 292 LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (697)
Q Consensus 292 lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~stlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (697)
+++++|+|+.+++|+.|+||||||+||++|+|+|||.+|+++|++||+||.+|++++..++.+|++|||.
T Consensus 81 ~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lfe~ 150 (150)
T d1q79a1 81 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEA 150 (150)
T ss_dssp SCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCC
T ss_pred CCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999973
No 4
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.7e-52 Score=396.65 Aligned_cols=150 Identities=45% Similarity=0.965 Sum_probs=147.3
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeeccccccc
Q 005414 212 PNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAE 291 (697)
Q Consensus 212 P~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~ 291 (697)
||.+.||.+||+||+|||+||||+|++||||||+||||||++||+|||+++++||.+||.+|++|+||+||++++++++.
T Consensus 1 Pn~~~Fr~alR~IK~WAk~RGIYsn~~GylGGI~waILvArvCql~p~a~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~ 80 (150)
T d2q66a1 1 PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGP 80 (150)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCceeccCccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 005414 292 LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (697)
Q Consensus 292 lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~stlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (697)
+++++|+|+.|.+|+.|+||||||+||++|+|+|||.+|+++|++||+||.+|++++..++.+|++||++
T Consensus 81 ~~~~~w~p~~~~~d~~~~MpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~~W~~Lfe~ 150 (150)
T d2q66a1 81 LQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEK 150 (150)
T ss_dssp TTSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCC
T ss_pred ccCCCCCCCCCCCCcccccceecCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 5
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=2.8e-31 Score=257.84 Aligned_cols=130 Identities=22% Similarity=0.381 Sum_probs=109.0
Q ss_pred cchhhhcccEEEEEEEe-CChhhhhhhhhhhHhhHHHHHHHhhhcccCceeeccCCCCCCCC------------------
Q 005414 362 YLFFESYRNYLQVDIVA-ANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT------------------ 422 (697)
Q Consensus 362 ~~Ff~~Yk~yl~I~v~a-~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~~~------------------ 422 (697)
++||.+|||||+|.+.+ .+++++.+|.||||||||.||.+||+. .++..|||||+.|...
T Consensus 1 ~dFF~~YK~YL~V~a~s~~t~e~~~~W~G~VESKlR~LV~~LE~~-~~I~lAHP~pk~F~~~~~~~~~~e~~~v~~~~~~ 79 (178)
T d2q66a3 1 NDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGIKIAHPFTKPFESSYCCPTEDDYEMIQDKYGS 79 (178)
T ss_dssp CCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEEEEECSSCEEEEEECCSHHHHHHHHHHTTC
T ss_pred CchhhhcccEEEEEEEeCCcHHHhhhhhhHHHHHHHHHHHHhccC-CCeeEEecCCcCcccccccccHHHHHHHhhcccc
Confidence 58999999999999966 689999999999999999999999985 5778899999999421
Q ss_pred -------------------------CCCCceeEEEEeeeeCCCCccCCCceecchHHHHHHHHHHhhcc---ccCCceEE
Q 005414 423 -------------------------SKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYM---FWKPGMEI 474 (697)
Q Consensus 423 -------------------------~~~~~~~~ffIGL~~~~~~~~~~~~~~dl~~~v~eF~~~i~~~~---~~~~~m~i 474 (697)
....+.+.|||||+++.. +.++++||+.++++|.+.|++|. +++.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~fIGL~~~~~---~~~~~lDi~~~i~~F~~~~~~w~~~~~~~~~m~i 156 (178)
T d2q66a3 80 HKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVNLCRSFNEDYGDHKVFNL 156 (178)
T ss_dssp TTTGGGGTTSBCCTTTC-CCHHHHHSCEEEEEEEEEEEEECC--------CCCCHHHHHHHHHHHHCSCSTTCCTTTEEE
T ss_pred cccccccccccccccccccccccCCCCcceEEEEEEEEEeccC---CCCccccChHHHHHHHHHHHhhhhcccCCCCceE
Confidence 011366899999998742 23467999999999999999995 34556999
Q ss_pred EEEeeccCCCCCCcCCCCccc
Q 005414 475 CVSHIRRKQIPPYVFPEGYKR 495 (697)
Q Consensus 475 ~v~~vkr~~LP~~v~~~g~~~ 495 (697)
.|+|||+++||++||++|+.|
T Consensus 157 ~I~hVk~~dLP~~Vf~~Ge~r 177 (178)
T d2q66a3 157 ALRFVKGYDLPDEVFDENEKR 177 (178)
T ss_dssp EEEEEEGGGCCGGGSCTTCCC
T ss_pred EEEEechhhCchhhcCCCCCC
Confidence 999999999999999999876
No 6
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.96 E-value=2.1e-30 Score=241.25 Aligned_cols=125 Identities=24% Similarity=0.395 Sum_probs=103.5
Q ss_pred cchhhhcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHHHhhhcccCceeeccCCCCCCCC----CCCCceeEEEEeeee
Q 005414 362 YLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT----SKPCAHCAFFMGLQR 437 (697)
Q Consensus 362 ~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~~~----~~~~~~~~ffIGL~~ 437 (697)
.+||.+|||||+|++.|.+++++++|.||||||||.|+.+||+.. ++..|||||++|.+. +..+++|+|||||.+
T Consensus 1 ~~FF~~yk~yl~v~~~a~~~~~~~~w~G~vESrlR~Lv~~lE~~~-~i~~a~~~p~~f~~~~~~~~~~~~~~~~fIGL~~ 79 (134)
T d1q79a3 1 PNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVF 79 (134)
T ss_dssp CCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEE
T ss_pred CChhhhCceEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHhcccC-CceEEecCCCCcCCcccCCCCCceEEEEEEEEEe
Confidence 489999999999999999999999999999999999999999876 456799999999764 335689999999998
Q ss_pred CCCCccCCCceecchHHHHHHHHHHhh----ccccCCceEEEEEeeccCCCCCCc
Q 005414 438 KPGEVVQEGQQFDIRGSVEEFKLSINM----YMFWKPGMEICVSHIRRKQIPPYV 488 (697)
Q Consensus 438 ~~~~~~~~~~~~dl~~~v~eF~~~i~~----~~~~~~~m~i~v~~vkr~~LP~~v 488 (697)
+++.. .++.++||+..+++|.+.++. +.+|++||+|.|+||||+|||+||
T Consensus 80 ~~~~~-~~~~~ldl~~~i~~F~~~~~~~~~~~~~~~~~m~I~v~hVkr~~LP~~v 133 (134)
T d1q79a3 80 KKTEN-SENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL 133 (134)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGC
T ss_pred ccCCC-CCCcccccchHHHHHHHHHHHhccccccCCCCCEEEEEEechHHcchhc
Confidence 75432 234679999999999987754 567899999999999999999997
No 7
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=99.90 E-value=2.9e-24 Score=205.02 Aligned_cols=145 Identities=13% Similarity=0.145 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCCC-----------------------------CCHHHH
Q 005414 215 EHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN-----------------------------AVPSML 265 (697)
Q Consensus 215 ~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn-----------------------------~s~~~L 265 (697)
+++|+|+++||+|||+|||++++.|+||||+|++||+++||..+. .++++|
T Consensus 2 P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~L 81 (183)
T d2b4va1 2 VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRL 81 (183)
T ss_dssp TTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHH
T ss_pred cceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHHHH
Confidence 578999999999999999999999999999999999999998421 148999
Q ss_pred HHHHHHHhh-cCCCCCceeecccccccC--CcccccCCCC-CCCCCCceEEeCCCCCCCCccCcc----CHhHHHHHHHH
Q 005414 266 VSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKN-RRDKTHHMPIITPAYPCMNSSYNV----STSTLRVMMDQ 337 (697)
Q Consensus 266 L~~FF~~Ys-~wdW~~pV~l~~i~~g~l--g~~~W~p~~~-~~dr~~~MpIiTP~~P~~Nsa~nV----s~stlrvI~~E 337 (697)
|.+||+||+ .|||.+-++... ..+.+ ....|....+ ...+.+.|+|+||++|.+|++||| +..+++.|++|
T Consensus 82 l~~FF~~Y~~~fd~~~~~Isi~-~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~~ 160 (183)
T d2b4va1 82 LHGFFIFYAHHFDYEREVVSLN-RNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQE 160 (183)
T ss_dssp HHHHHHHHHHSSCTTTEEBCSS-SSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccccCHHHceeeec-cCCccchhhhhccccccCCCCCCcceEEeCCCccccccccchhhhcCHHHHHHHHHH
Confidence 999999999 699999665322 11111 1123432211 112346799999999977666665 55679999999
Q ss_pred HHHHHHHHHHhhhcCCCcccccc
Q 005414 338 FQYGNTICEEVELNKAQWSALFE 360 (697)
Q Consensus 338 F~Ra~~Il~~i~~~~~~W~~Lf~ 360 (697)
|+||+++|+++....++|..+|+
T Consensus 161 f~~a~~~l~~~~~~~~~~~~i~g 183 (183)
T d2b4va1 161 FLRAAQCMERFLPTNAPEKSILG 183 (183)
T ss_dssp HHHHHHHHHHCCTTTCSCCGGGC
T ss_pred HHHHHHHHHHHHhcCCchhhhcC
Confidence 99999999998888888988774
No 8
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.37 E-value=1.3e-06 Score=80.63 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeccccCcCCC-CCeeEEe
Q 005414 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALC 114 (697)
Q Consensus 36 ~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~ 114 (697)
+-|.+.|+. +.||++|.+.=..+.+.|+..+++ .++.++.+|||+-|.++++ +|||+.+
T Consensus 5 ~il~~vl~~--I~Pt~ee~~~~~~~~~~l~~~l~~------------------~~~e~~~~GS~ar~T~l~~~~DiDifv 64 (142)
T d1r89a2 5 EILEKALEL--VIPDEEEVRKGREAEEELRRRLDE------------------LGVEYVFVGSYARNTWLKGSLEIDVFL 64 (142)
T ss_dssp HHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH------------------HTCCEEEEHHHHHTCCCTTCCEEEEEE
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHhhh------------------cCccEEEeccccccccCCCccceeEEE
Confidence 345566665 779999877655555555544442 1356889999999999996 8999999
Q ss_pred ecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEee
Q 005414 115 VGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYA 168 (697)
Q Consensus 115 v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa 168 (697)
+.|....++ ++...+.++++..-. ... +..|.=|-+++.++|+++||.=|
T Consensus 65 ~~~~~~~~e-~l~~~~~~~~~~~~~--~~~-~~y~~hpyv~~~~~g~~vDvVP~ 114 (142)
T d1r89a2 65 LFPEEFSKE-ELRERGLEIGKAVLD--SYE-IRYAEHPYVHGVVKGVEVDVVPC 114 (142)
T ss_dssp EECTTSCHH-HHHHHHHHHHHHHSS--SEE-EEESSSEEEEEEETTEEEEEEEE
T ss_pred EeCCCCCHH-HHHHHHHHHHHHhhc--cce-EeeccCCEEEEEECCeEEEEEEE
Confidence 999877664 677777777765321 111 23445599999999999999743
No 9
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=98.08 E-value=4.1e-06 Score=72.19 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHH
Q 005414 56 KREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILA 135 (697)
Q Consensus 56 ~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~ 135 (697)
.|++.++.|+.++++.. ..++|+.|||++.|-+.++||||++++.+...+. .-+..+...|.
T Consensus 4 i~~e~l~~i~~il~~~~----------------~~~~v~LFGS~arg~~~~~SDiDl~I~~~~~~~~--~~~~~l~~~l~ 65 (100)
T d1no5a_ 4 IKSEELAIVKTILQQLV----------------PDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF--LARDRLKEAFS 65 (100)
T ss_dssp SCHHHHHHHHHHHHHHC----------------TTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----------------CCcEEEEECCCCCCCcCCCCCceEEEEeCCCCCH--HHHHHHHHHHH
Confidence 46678888888887642 2478999999999999999999999988765543 22334555555
Q ss_pred h
Q 005414 136 E 136 (697)
Q Consensus 136 ~ 136 (697)
+
T Consensus 66 ~ 66 (100)
T d1no5a_ 66 E 66 (100)
T ss_dssp H
T ss_pred h
Confidence 4
No 10
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=97.69 E-value=4e-05 Score=75.99 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeec-cccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh
Q 005414 58 EQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE 136 (697)
Q Consensus 58 ~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy-~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~ 136 (697)
.++-..|+.||+.|- .+++||+|||. ..|+|.-+||+|.-|+....-.. .+-....-+.|++
T Consensus 32 ~RAr~QLe~lv~~~~----------------~da~Vf~FGs~Vs~G~wdg~gD~DF~v~dve~~pp-~e~~av~te~lRr 94 (259)
T d2b4va2 32 IRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPS-HEVQAKRTDKLRT 94 (259)
T ss_dssp HHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----------------CCeeEEEccceeEEeeeccccccceeeeecCCCCc-ccchhhhHHHHHH
Confidence 346678999999983 36999999998 68999999999999988775333 2455555667775
Q ss_pred cc-CC------ceEEEeccCccceEEEEe
Q 005414 137 ME-EV------TELQPVLDAHVPVMKFKF 158 (697)
Q Consensus 137 ~~-~V------~~l~~I~~ArVPIIKf~~ 158 (697)
.. .. .++.++.+|+|||||..+
T Consensus 95 ~g~~~~~~~l~s~lep~~~aRVPviK~~~ 123 (259)
T d2b4va2 95 VIKRYVPHYLRNNLLGLTEARTPVVKLRF 123 (259)
T ss_dssp HHHTTSCHHHHTTEEEECSSSSCEEEECC
T ss_pred hhhhhccccccccccccccccceeEeeec
Confidence 32 22 478999999999999864
No 11
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.53 E-value=8.5e-05 Score=63.14 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=28.2
Q ss_pred CeEEEEeeeccccCcCC-CCCeeEEeecCCccC
Q 005414 90 NALIFTFGSYRLGVHGP-GADIDALCVGPSYVS 121 (697)
Q Consensus 90 ~~~I~~FGSy~lGv~~p-~SDID~l~v~P~~v~ 121 (697)
.++|+.|||++-|-+.+ +||||++++.+....
T Consensus 14 ~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~~ 46 (90)
T d1ylqa1 14 DAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFED 46 (90)
T ss_dssp TCEEEEESHHHHCCSSSCCCSEEEEEECGGGGS
T ss_pred CcEEEEECccccCCCCCCCCccEEEEEeCCCCC
Confidence 58999999999999997 799999999876543
No 12
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.34 E-value=9.2e-05 Score=65.40 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCCCCc--cCccchHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCccccc
Q 005414 221 LRCLKFWAKRRGVYSNV--TGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWD 298 (697)
Q Consensus 221 lr~IK~WAK~RGIysn~--~G~LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~ 298 (697)
+|++|+++|.-|+|++- .++++||..-||+++|=- +....+--+ .|..+++++.. .+. .
T Consensus 6 VrLlK~FlK~igvYGaE~~~~GFSGYl~ElLi~~YGs----------F~~~lk~as--~wk~~~~Id~~-~~~---~--- 66 (115)
T d1r89a1 6 VRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFYGS----------FLETVKNAR--RWTRRTVIDVA-KGE---V--- 66 (115)
T ss_dssp HHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHHSS----------HHHHHHHHT--TCCTTEEEEGG-GTE---E---
T ss_pred HHHHHHHHHhcCccchHhhcCcchhHHHHHHHHHHCC----------HHHHHHHHH--hcCCCeEEecC-Ccc---c---
Confidence 68999999999999975 689999999999998721 222223233 46777887542 211 0
Q ss_pred CCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHH
Q 005414 299 PRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMM 335 (697)
Q Consensus 299 p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~stlrvI~ 335 (697)
...+++.||||.+|..|+|.+||..++....
T Consensus 67 ------~~~~plvviDPvDp~RNvAAalS~~~~~~Fi 97 (115)
T d1r89a1 67 ------RKGEEFFVVDPVDEKRNVAANLSLDNLARFV 97 (115)
T ss_dssp ------EECSSCEEEETTEEEEETTTTCCHHHHHHHH
T ss_pred ------ccCCCeEEeCCCCCcchHHHHcCHHHHHHHH
Confidence 1135799999999999999999987766543
No 13
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=96.61 E-value=0.0014 Score=55.93 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=26.9
Q ss_pred eEEEEeeeccccCcCCCCCeeEEeecCCccC
Q 005414 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYVS 121 (697)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~ 121 (697)
.+++.|||++.|-+.++||||+++......+
T Consensus 26 ~~v~lFGS~arg~~~~~SDIDi~V~~~~~~~ 56 (98)
T d1wota_ 26 VRVRVFGSVARGEAREDSDLDLLVAFEEGRT 56 (98)
T ss_dssp SSCEECSHHHHTCCCTTCCCEEEECCCSSCC
T ss_pred cEEEEECCccCCCCCCCCCceEEEEeCCCCC
Confidence 4699999999999999999999998765543
No 14
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=95.96 E-value=0.0039 Score=55.34 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=25.6
Q ss_pred eEEEEeeeccccCcCCCCCeeEEeecCC
Q 005414 91 ALIFTFGSYRLGVHGPGADIDALCVGPS 118 (697)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~ 118 (697)
..|..||||+-|-..|+||||++|+.+.
T Consensus 32 ~~i~L~GS~arg~~~~~SDiDl~vv~~~ 59 (125)
T d1knya2 32 KAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (125)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred EEEEEECccccCCCCCCCCeEEEEEECC
Confidence 5699999999999999999999999764
No 15
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.81 E-value=0.039 Score=51.84 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCeEEEEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCcc------ceEEEEe---c
Q 005414 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV------PVMKFKF---D 159 (697)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArV------PIIKf~~---~ 159 (697)
.+.++..-||||=|-.+ ..|||+|+..|....- ..++..+...|++..-+.+......... =|.++.. .
T Consensus 23 ~~~~~~i~GSyRRgk~~-~gDIDili~~~~~~~~-~~~l~~~~~~l~~~g~i~~~l~~~~~~~~~~~~~gi~~l~~~~~~ 100 (190)
T d2bcqa3 23 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 100 (190)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEecccccCCcc-cCCeeEEEecCCchhH-HHHHHHHHHHHHhcCceEEEEeeecccCCcceeEEEEecCCCCCc
Confidence 46899999999998443 6799999988765443 3678888899988655443222111111 1111111 3
Q ss_pred CeeeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccC
Q 005414 160 GLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTG 239 (697)
Q Consensus 160 GI~iDLsfa~l~~~~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G 239 (697)
+..|||.++.... . .-.++-+-.+. ...+.++.||+++|..=|-+|
T Consensus 101 ~rrvDi~~~~~~~------~------------------------~~allyfTGs~----~fn~~lR~~A~~~G~~Lne~G 146 (190)
T d2bcqa3 101 HRRLDIIVVPYSE------F------------------------ACALLYFTGSA----HFNRSMRALAKTKGMSLSEHA 146 (190)
T ss_dssp CEEEEEEECCGGG------H------------------------HHHHHHHHCCH----HHHHHHHHHHHHTTCEECSSC
T ss_pred ceeEEEEEcCHHH------H------------------------HHHHHhhcccH----HHHHHHHHHHHHhCCcccccc
Confidence 5789998876311 0 11222222222 235788999999998777777
Q ss_pred cc
Q 005414 240 FL 241 (697)
Q Consensus 240 ~L 241 (697)
..
T Consensus 147 L~ 148 (190)
T d2bcqa3 147 LS 148 (190)
T ss_dssp EE
T ss_pred Cc
Confidence 63
No 16
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.50 E-value=0.051 Score=50.76 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeccccCcCCCCCeeEEeecCCccCc---hhhHHHHHHHHHHhccC
Q 005414 63 RIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSR---EEDFFFILHNILAEMEE 139 (697)
Q Consensus 63 ~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~r---e~dFf~~l~~~L~~~~~ 139 (697)
.+.++|+++++.+ +.+.++...||||=|- .-..|||+|+..|..... ....+..+.+.|.+.+.
T Consensus 9 ~i~~~i~~~~~~~------------~~~~~v~i~GSyRRgk-~~~gDIDilIt~~~~~~~~~~~~~~l~~v~~~l~~~~~ 75 (187)
T d2fmpa3 9 QMQDIVLNEVKKV------------DSEYIATVCGSFRRGA-ESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHF 75 (187)
T ss_dssp HHHHHHHHHHHHH------------CTTCEEEECHHHHTTC-SEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC------------CCCcEEEEeeecccCC-cccCCccEEEecCCccchhhhhhHHHHHHHHHHHHCCc
Confidence 4555555555432 2468899999999984 557799999988764321 13567778888887666
Q ss_pred CceEEEeccCcc-ceEEEE-------ecCeeeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhC
Q 005414 140 VTELQPVLDAHV-PVMKFK-------FDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLV 211 (697)
Q Consensus 140 V~~l~~I~~ArV-PIIKf~-------~~GI~iDLsfa~l~~~~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lV 211 (697)
+.........+. =++++- ..+..|||.++.... -.-.++-+-
T Consensus 76 i~~~l~~g~~k~~g~~~l~~~~~~~~~~~rrvDi~~~~~~~------------------------------~~~all~fT 125 (187)
T d2fmpa3 76 ITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQ------------------------------YYCGVLYFT 125 (187)
T ss_dssp EEEEEEECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGG------------------------------HHHHHHHHH
T ss_pred chhhhhcCCceEEEEEEecCcCccccCcceEEEEEEcCHHH------------------------------hHHHHHhhc
Confidence 554433332221 112221 135789988876321 012233333
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCCccCcc
Q 005414 212 PNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (697)
Q Consensus 212 P~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (697)
.+. ...|.++.||+++|..=|-.|..
T Consensus 126 Gs~----~fn~~lR~~A~~kG~~Ln~~GL~ 151 (187)
T d2fmpa3 126 GSD----IFNKNMRAHALEKGFTINEYTIR 151 (187)
T ss_dssp CCH----HHHHHHHHHHHHTTEEECSSCEE
T ss_pred CcH----HHHHHHHHHHHHhcCeEchhcCc
Confidence 332 23577899999999777766663
No 17
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=94.49 E-value=0.12 Score=46.90 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCC---CCCHHHHHHHHHHHh
Q 005414 216 HFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP---NAVPSMLVSRFFRVY 273 (697)
Q Consensus 216 ~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P---n~s~~~LL~~FF~~Y 273 (697)
..+.|+|+||+|-+.. ......+.+.+|++-||+++..+.-. +.+.++.+..+.+.-
T Consensus 3 klK~LIRLVKhWy~~~-~~~~~~~lPpsYaLELLtiyAwE~g~~~~~f~~a~gFrtVleLv 62 (146)
T d1px5a1 3 KLKSLIRLVKHWYQTC-KKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELV 62 (146)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhccCCCCCcHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 4678999999999754 22333356899999999999987643 345666655555554
No 18
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.13 E-value=0.29 Score=46.08 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeccccCcCCCCCeeEEeecCCccCch-hhHHHHHHHHHHhc
Q 005414 62 GRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEM 137 (697)
Q Consensus 62 ~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re-~dFf~~l~~~L~~~ 137 (697)
+.+..+|++.++.+ +++++|..-||||=|-. -.+|||+|+..|....-. ......+.+.|++.
T Consensus 7 ~~i~~~v~~~~~~~------------~~~~~v~i~GSyRRGk~-tsgDIDili~~~~~~~~~~~~~l~~~~~~l~~~ 70 (208)
T d1jmsa4 7 EAVSMLVKEAVVTF------------LPDALVTMTGGFRRGKM-TGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQ 70 (208)
T ss_dssp HHHHHHHHHHHHHH------------CTTCEEEECHHHHTTCS-CBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc------------CCCcEEEEeeccccCCC-ccCCeeEEEecCCCchhhHHHHHHHHHHHHHhc
Confidence 45566666665443 35789999999999964 467999999888753321 23456666777654
No 19
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=92.98 E-value=0.23 Score=47.12 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeccccCcCCC-CCeeEEe
Q 005414 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALC 114 (697)
Q Consensus 36 ~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~ 114 (697)
.+|.+++.+ .|-|+.+=...=.++++.|...+++ -|. +|... +-.=.+|..-|||+-|..+++ ||+|+|+
T Consensus 9 ~~Ld~fI~~-~Lqp~~~f~~~~~~avd~i~~fLke----~cf-~~~~~---~v~V~kVvKGGS~gkGTaLr~~SDvDlVv 79 (200)
T d1px5a2 9 RDLDKFIED-HLLPNTCFRTQVKEAIDIVCRFLKE----RCF-QGTAD---PVRVSKVVKGGSSGKGTTLRGRSDADLVV 79 (200)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHH----HTT-CC------CCEEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHH----Hhc-ccCCC---CceEEEEEeccccCCCcccCCCCcceEEE
Confidence 357788876 5778877555555666666666653 111 12111 111268899999999999987 7999999
Q ss_pred ecCC
Q 005414 115 VGPS 118 (697)
Q Consensus 115 v~P~ 118 (697)
....
T Consensus 80 Fls~ 83 (200)
T d1px5a2 80 FLTK 83 (200)
T ss_dssp EEES
T ss_pred EecC
Confidence 7653
No 20
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=81.89 E-value=1.2 Score=39.39 Aligned_cols=80 Identities=23% Similarity=0.201 Sum_probs=33.4
Q ss_pred EEEEeeeccccCcCCC--CCeeEEeecCCccC--chhhHHHHHHHHHH-hccCCceEE-EeccCccceEEEEecCeeeeE
Q 005414 92 LIFTFGSYRLGVHGPG--ADIDALCVGPSYVS--REEDFFFILHNILA-EMEEVTELQ-PVLDAHVPVMKFKFDGLSIDL 165 (697)
Q Consensus 92 ~I~~FGSy~lGv~~p~--SDID~l~v~P~~v~--re~dFf~~l~~~L~-~~~~V~~l~-~I~~ArVPIIKf~~~GI~iDL 165 (697)
-|...||.+.|-+.++ ||+|++.++..... .+..+...|.+.|- +.|+-.... ....+....+-+--+|.+|||
T Consensus 23 Av~L~GSRan~~~~~D~fsD~Div~~v~d~~~f~~~~~Wl~~fG~~l~~q~pe~~~~~~~~~~~~~~~l~lfeDG~rIDl 102 (135)
T d2pbea2 23 LVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDGNKLDL 102 (135)
T ss_dssp EEEEC------------CCCEEEEEEESCHHHHHTCSGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTSCEEEE
T ss_pred EEEEecccCCCCCCCCCCcceeEEEEecCchHhhhCHHHHHHhCchhheEccccccccCcccCCceEEEEEecCCcEEEE
Confidence 4677899999999999 99999988754210 00011112221111 111111111 112344443333348999999
Q ss_pred Eeeecc
Q 005414 166 LYASIS 171 (697)
Q Consensus 166 sfa~l~ 171 (697)
.+..+.
T Consensus 103 ~l~~~~ 108 (135)
T d2pbea2 103 TLIPIR 108 (135)
T ss_dssp EEEEGG
T ss_pred EEeCHH
Confidence 998764
No 21
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=79.52 E-value=0.43 Score=43.90 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=65.2
Q ss_pred cccccCCeEEEEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCcc-ceEEEEecCee
Q 005414 84 QMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV-PVMKFKFDGLS 162 (697)
Q Consensus 84 ~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArV-PIIKf~~~GI~ 162 (697)
++.....-.|.+-||||=|-.+ ..|||+++.++.. ..+..+...|...+.+.++......+. -+.++.-.|+.
T Consensus 25 ~l~~~~~~~i~~aGSyRRgke~-~gDIDili~~~~~-----~~~~~~l~~l~~~~~i~~~l~~g~~k~~~~~~~~~~~rr 98 (174)
T d1jqra_ 25 QLIKILSKNIVAVGSLRREEKM-LNDVDLLIIVPEK-----KLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQ 98 (174)
T ss_dssp EEEECCGGGEEECHHHHTTCSE-ESCEEEEEEECSS-----TTHHHHTTTEEESSSEEEEEEECSSEEEEEEEETTEEEE
T ss_pred HHHHHHhcCEEEeeccccCccc-cCCeEEEEecCCH-----HHHHHHHHHHHhCCceEEEeeccCceeEEEEecCCCcEE
Confidence 3333344579999999998766 4699999988743 222333333333333333322222211 12222224799
Q ss_pred eeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCc
Q 005414 163 IDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (697)
Q Consensus 163 iDLsfa~l~~~~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (697)
+||.++.... . .-.++-+-... .-.+.++.||+++|..=|-.|.
T Consensus 99 vDi~~~~~~~------~------------------------~~aLl~~TGS~----~fn~~lR~~A~~~G~~Lne~GL 142 (174)
T d1jqra_ 99 LDLFTALAEE------K------------------------PYAIFHFTGPV----SYLIRIRAALKKKNYKLNQYGL 142 (174)
T ss_dssp EEEEEEETTH------H------------------------HHHHHHHHCCH----HHHHHHHHHHHTTTEEEETTEE
T ss_pred EEEEEcCHHH------H------------------------HHHHHHHhccH----HHHHHHHHHHHhhcceeccccC
Confidence 9999987321 0 11233332332 2357789999999876666664
No 22
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]}
Probab=39.67 E-value=35 Score=29.29 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=41.1
Q ss_pred CCeEEEEeeeccccCcC---CCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEe-ccCccc-eEEEEecCeee
Q 005414 89 ANALIFTFGSYRLGVHG---PGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPV-LDAHVP-VMKFKFDGLSI 163 (697)
Q Consensus 89 ~~~~I~~FGSy~lGv~~---p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I-~~ArVP-IIKf~~~GI~i 163 (697)
.+..-...||+++.+|+ ..-|||+++ .+ .-+..+.++|.+... .....- ..-..+ ...+...|+.|
T Consensus 20 ~~i~~~i~Gg~A~~~~G~~r~t~DiDi~v-~~-------~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~g~~i 90 (157)
T d2fcla1 20 EKVNWVVTGSLSFALQGVPVEVHDIDIQT-DE-------EGAYEIERIFSEFVS-KKVRFSSTEKICSHFGELIIDGIKV 90 (157)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH-------HHHHHHHHHTGGGEE-EEEEEEECSSEEEEEEEEEETTEEE
T ss_pred CCCCEEEEhHHHHHHCCCCCCCCceeEEE-cc-------cCHHHHHHHHHHhCc-CCCCcccccccccceEEEeeCCeEE
Confidence 35677888998876664 567999965 21 223456667765321 111111 111112 34667789999
Q ss_pred eEEee
Q 005414 164 DLLYA 168 (697)
Q Consensus 164 DLsfa 168 (697)
||...
T Consensus 91 di~~~ 95 (157)
T d2fcla1 91 EIMGD 95 (157)
T ss_dssp EEEEE
T ss_pred EEeCc
Confidence 98653
No 23
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.43 E-value=1e+02 Score=29.37 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHhhcCCCccc-cccCCeEEEEeeeccccCcCCCCCeeEEeecCCccC--------chhhHHHHHHHHHHh
Q 005414 75 LTRLRGYSDQM-VEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVS--------REEDFFFILHNILAE 136 (697)
Q Consensus 75 v~~~~g~~~~~-~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~--------re~dFf~~l~~~L~~ 136 (697)
++...|.+... .+..+..|.-.|-+.-+=-.-+||||++++.+.... ....||..+.+.|.+
T Consensus 137 ~~~~~g~p~~~~~~~~~~~VIamGKlGg~ELny~SDlDLIfvy~~~~~~~~~~~~~~~~~~~~rla~~l~~ 207 (285)
T d1v4aa2 137 CCREWGTPCNAQGEAQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 207 (285)
T ss_dssp HHHHTTSSCEETTEECCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCcCCeEEEecchhcccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 44556655321 233467888888888877788999999999753211 013688877766664
Done!