Query 005416
Match_columns 697
No_of_seqs 233 out of 1493
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 23:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 5E-179 1E-183 1528.0 61.8 684 12-697 9-693 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 6E-140 1E-144 1162.6 39.2 580 30-666 17-599 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.4E-88 3.1E-93 726.6 19.0 297 39-344 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.5E-36 1.2E-40 341.8 10.2 289 33-330 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 4.3E-21 9.3E-26 210.7 15.1 263 54-347 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 4.8E-13 1E-17 142.6 18.3 152 33-225 1-158 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 8.9E-11 1.9E-15 137.0 25.4 159 31-224 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 8.8E-11 1.9E-15 143.8 17.8 259 31-346 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 2.7E-10 5.8E-15 139.4 18.2 149 31-224 334-488 (1027)
10 COG3250 LacZ Beta-galactosidas 99.0 2.6E-09 5.7E-14 126.7 15.0 121 30-192 283-409 (808)
11 PF00150 Cellulase: Cellulase 99.0 7.9E-09 1.7E-13 107.8 14.6 160 42-223 3-170 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.6 2.8E-07 6.1E-12 84.6 9.1 84 463-553 24-110 (111)
13 PF03198 Glyco_hydro_72: Gluca 98.1 1.9E-05 4.2E-10 83.9 12.3 153 31-221 9-179 (314)
14 smart00633 Glyco_10 Glycosyl h 98.1 1.1E-05 2.5E-10 84.3 8.4 116 85-225 3-125 (254)
15 PF13204 DUF4038: Protein of u 98.0 7.9E-05 1.7E-09 79.6 12.9 225 37-291 2-274 (289)
16 TIGR03356 BGL beta-galactosida 97.9 2.8E-05 6.2E-10 87.4 8.4 97 62-170 54-151 (427)
17 PF02837 Glyco_hydro_2_N: Glyc 97.9 8.3E-05 1.8E-09 72.3 10.1 98 470-573 64-163 (167)
18 PLN02705 beta-amylase 97.6 0.00013 2.8E-09 82.8 8.4 80 60-145 266-357 (681)
19 PLN02905 beta-amylase 97.6 0.00018 3.8E-09 82.0 8.7 79 61-145 285-375 (702)
20 PLN02801 beta-amylase 97.6 0.00019 4E-09 80.4 8.6 80 60-145 35-126 (517)
21 PLN00197 beta-amylase; Provisi 97.6 0.00023 5E-09 80.3 8.8 80 60-145 125-216 (573)
22 PLN02803 beta-amylase 97.5 0.00028 6.1E-09 79.4 8.7 80 60-145 105-196 (548)
23 PF13364 BetaGal_dom4_5: Beta- 97.5 0.00013 2.9E-09 66.9 4.4 43 622-666 34-81 (111)
24 PLN02161 beta-amylase 97.4 0.00046 9.9E-09 77.4 8.9 82 60-146 115-207 (531)
25 PF01373 Glyco_hydro_14: Glyco 97.2 0.00043 9.3E-09 76.2 5.3 115 63-187 17-153 (402)
26 PF14488 DUF4434: Domain of un 97.0 0.011 2.5E-07 58.1 12.5 136 57-222 15-158 (166)
27 PF00331 Glyco_hydro_10: Glyco 97.0 0.00094 2E-08 72.5 5.4 158 49-227 11-180 (320)
28 PF00232 Glyco_hydro_1: Glycos 97.0 0.00079 1.7E-08 76.5 4.9 97 62-170 58-156 (455)
29 PF07745 Glyco_hydro_53: Glyco 96.9 0.0033 7.1E-08 68.4 8.6 142 65-225 27-177 (332)
30 COG3693 XynA Beta-1,4-xylanase 96.8 0.0076 1.6E-07 64.4 10.0 133 71-226 55-194 (345)
31 COG3867 Arabinogalactan endo-1 96.6 0.012 2.6E-07 62.0 10.2 115 64-191 65-182 (403)
32 COG2730 BglC Endoglucanase [Ca 96.6 0.0059 1.3E-07 68.4 8.6 115 60-192 66-193 (407)
33 PRK15014 6-phospho-beta-glucos 96.6 0.0064 1.4E-07 69.5 8.4 95 63-169 70-167 (477)
34 PLN02998 beta-glucosidase 96.5 0.0027 5.9E-08 72.8 4.8 95 63-169 83-179 (497)
35 PRK09852 cryptic 6-phospho-bet 96.5 0.0071 1.5E-07 69.0 8.0 95 63-169 72-169 (474)
36 PLN02814 beta-glucosidase 96.4 0.0035 7.5E-08 72.1 4.7 95 63-169 78-174 (504)
37 PRK13511 6-phospho-beta-galact 96.3 0.012 2.5E-07 67.4 8.5 95 63-169 55-150 (469)
38 PRK09593 arb 6-phospho-beta-gl 96.2 0.0055 1.2E-07 70.1 5.2 96 62-169 73-171 (478)
39 TIGR01233 lacG 6-phospho-beta- 96.1 0.016 3.5E-07 66.1 8.6 95 63-169 54-149 (467)
40 PRK09589 celA 6-phospho-beta-g 96.1 0.0059 1.3E-07 69.8 4.9 95 63-169 68-165 (476)
41 PLN02849 beta-glucosidase 96.1 0.0057 1.2E-07 70.3 4.8 95 63-169 80-176 (503)
42 PRK10150 beta-D-glucuronidase; 95.7 0.068 1.5E-06 63.0 11.3 99 472-576 63-179 (604)
43 PF14871 GHL6: Hypothetical gl 95.5 0.086 1.9E-06 50.1 9.2 98 66-168 4-123 (132)
44 KOG2230 Predicted beta-mannosi 95.4 0.16 3.6E-06 57.7 12.4 149 38-226 328-494 (867)
45 PRK10340 ebgA cryptic beta-D-g 94.6 0.13 2.8E-06 64.3 10.0 94 474-576 109-206 (1021)
46 COG2723 BglB Beta-glucosidase/ 94.4 0.044 9.5E-07 61.8 4.8 95 63-169 60-157 (460)
47 PRK09936 hypothetical protein; 94.4 0.16 3.4E-06 54.0 8.4 58 57-120 33-91 (296)
48 PRK09525 lacZ beta-D-galactosi 93.8 0.25 5.5E-06 61.7 10.1 93 474-575 120-217 (1027)
49 COG3934 Endo-beta-mannanase [C 93.2 0.069 1.5E-06 59.8 3.4 156 39-212 3-167 (587)
50 TIGR01515 branching_enzym alph 92.9 2.6 5.7E-05 49.9 16.2 155 66-224 160-348 (613)
51 PF02638 DUF187: Glycosyl hydr 91.7 0.68 1.5E-05 50.2 8.7 118 60-187 17-161 (311)
52 PF02837 Glyco_hydro_2_N: Glyc 91.2 0.2 4.4E-06 48.5 3.7 45 622-666 67-114 (167)
53 smart00642 Aamy Alpha-amylase 91.1 0.61 1.3E-05 45.9 6.9 66 63-128 20-97 (166)
54 PRK14706 glycogen branching en 90.5 5.9 0.00013 47.3 15.6 149 69-224 175-357 (639)
55 PRK05402 glycogen branching en 90.5 3.8 8.1E-05 49.7 14.2 54 68-121 272-335 (726)
56 PF05913 DUF871: Bacterial pro 90.5 0.42 9E-06 52.8 5.7 73 50-128 2-74 (357)
57 PLN02447 1,4-alpha-glucan-bran 90.3 6.1 0.00013 47.8 15.4 60 62-122 251-321 (758)
58 PRK12568 glycogen branching en 89.6 8.2 0.00018 46.6 15.8 56 66-123 274-341 (730)
59 smart00812 Alpha_L_fucos Alpha 89.5 40 0.00087 37.8 21.6 244 55-351 77-336 (384)
60 TIGR00542 hxl6Piso_put hexulos 88.4 7.6 0.00016 40.9 13.2 131 61-219 15-149 (279)
61 PRK14705 glycogen branching en 87.5 11 0.00024 48.1 15.5 55 67-121 771-835 (1224)
62 COG1649 Uncharacterized protei 86.0 2.8 6E-05 47.2 8.4 122 60-191 62-210 (418)
63 PF01229 Glyco_hydro_39: Glyco 85.3 2 4.3E-05 49.5 7.2 65 52-122 29-105 (486)
64 PRK09441 cytoplasmic alpha-amy 85.3 1.5 3.1E-05 50.4 6.0 68 54-121 7-101 (479)
65 PF00128 Alpha-amylase: Alpha 83.3 1.4 3E-05 46.1 4.4 57 65-121 7-72 (316)
66 cd00019 AP2Ec AP endonuclease 82.3 11 0.00024 39.6 10.9 54 62-119 10-64 (279)
67 COG3589 Uncharacterized conser 81.7 3.3 7.1E-05 45.0 6.4 72 50-128 4-76 (360)
68 PRK01060 endonuclease IV; Prov 81.5 25 0.00054 36.9 13.2 83 64-169 14-99 (281)
69 PRK13210 putative L-xylulose 5 81.3 13 0.00028 38.9 11.0 132 62-219 16-149 (284)
70 COG0296 GlgB 1,4-alpha-glucan 79.8 3.4 7.3E-05 48.8 6.3 57 61-120 164-233 (628)
71 TIGR02402 trehalose_TreZ malto 79.7 3.4 7.4E-05 48.3 6.3 54 65-121 114-180 (542)
72 PRK12313 glycogen branching en 79.6 3.7 8E-05 48.9 6.7 54 68-121 177-240 (633)
73 PF01261 AP_endonuc_2: Xylose 78.4 4.2 9E-05 40.0 5.7 125 68-219 1-128 (213)
74 TIGR02631 xylA_Arthro xylose i 77.7 41 0.00088 37.7 13.8 91 60-169 30-125 (382)
75 PF13200 DUF4015: Putative gly 77.2 7.1 0.00015 42.5 7.4 112 60-172 11-137 (316)
76 TIGR01531 glyc_debranch glycog 75.9 7.9 0.00017 49.5 8.2 112 39-156 104-235 (1464)
77 TIGR02403 trehalose_treC alpha 75.1 4.7 0.0001 47.2 5.7 57 63-121 28-95 (543)
78 PRK10933 trehalose-6-phosphate 74.8 6.4 0.00014 46.2 6.8 55 64-121 35-101 (551)
79 PF13199 Glyco_hydro_66: Glyco 74.2 5.6 0.00012 46.6 6.0 79 62-140 118-211 (559)
80 PRK09856 fructoselysine 3-epim 74.1 50 0.0011 34.4 12.8 52 62-118 13-64 (275)
81 PLN02960 alpha-amylase 73.4 7.3 0.00016 47.7 6.8 57 65-121 420-486 (897)
82 TIGR02104 pulA_typeI pullulana 73.4 6.3 0.00014 46.7 6.3 56 66-121 168-249 (605)
83 PRK13209 L-xylulose 5-phosphat 72.9 34 0.00073 36.0 11.1 126 62-219 21-154 (283)
84 PRK13398 3-deoxy-7-phosphohept 72.8 16 0.00034 38.9 8.5 81 31-121 14-98 (266)
85 PRK10785 maltodextrin glucosid 72.4 7.4 0.00016 46.1 6.6 57 65-121 182-246 (598)
86 KOG0626 Beta-glucosidase, lact 72.1 6.7 0.00015 45.2 5.8 113 63-185 92-208 (524)
87 smart00518 AP2Ec AP endonuclea 71.2 72 0.0016 33.2 13.1 92 64-185 12-104 (273)
88 PRK09505 malS alpha-amylase; R 70.7 8.6 0.00019 46.2 6.6 58 64-121 232-312 (683)
89 PF02065 Melibiase: Melibiase; 70.2 43 0.00093 37.7 11.6 164 55-227 51-236 (394)
90 PF02679 ComA: (2R)-phospho-3- 69.4 7.7 0.00017 40.7 5.2 52 61-122 83-134 (244)
91 PF14307 Glyco_tran_WbsX: Glyc 69.1 49 0.0011 36.3 11.7 135 60-223 56-195 (345)
92 PRK09997 hydroxypyruvate isome 69.1 71 0.0015 33.2 12.5 42 64-119 17-58 (258)
93 cd06593 GH31_xylosidase_YicI Y 69.0 17 0.00036 39.1 7.9 70 59-128 21-93 (308)
94 PF01791 DeoC: DeoC/LacD famil 68.3 2 4.3E-05 44.5 0.6 58 65-127 79-136 (236)
95 TIGR03849 arch_ComA phosphosul 67.1 11 0.00025 39.3 5.8 53 61-123 70-122 (237)
96 cd06592 GH31_glucosidase_KIAA1 66.6 43 0.00093 36.1 10.5 69 57-128 25-97 (303)
97 TIGR02456 treS_nterm trehalose 66.4 8.8 0.00019 44.8 5.5 56 63-120 29-95 (539)
98 PF11324 DUF3126: Protein of u 66.4 12 0.00026 31.1 4.6 30 503-532 25-56 (63)
99 PF03659 Glyco_hydro_71: Glyco 66.4 18 0.00039 40.6 7.6 54 59-121 14-67 (386)
100 PF06832 BiPBP_C: Penicillin-B 63.8 12 0.00025 32.6 4.5 50 497-554 34-84 (89)
101 cd04908 ACT_Bt0572_1 N-termina 63.0 24 0.00052 28.7 6.0 55 61-119 12-66 (66)
102 KOG0496 Beta-galactosidase [Ca 62.2 4.6 9.9E-05 47.4 2.0 29 314-342 325-353 (649)
103 PRK14582 pgaB outer membrane N 60.8 40 0.00088 40.5 9.5 128 45-190 312-468 (671)
104 TIGR00677 fadh2_euk methylenet 60.6 27 0.00059 37.3 7.5 108 48-169 130-250 (281)
105 PF12876 Cellulase-like: Sugar 60.3 12 0.00026 32.6 4.0 48 176-223 6-62 (88)
106 TIGR02401 trehalose_TreY malto 59.4 22 0.00047 43.7 7.1 64 60-123 14-87 (825)
107 KOG2024 Beta-Glucuronidase GUS 59.0 16 0.00034 38.7 5.1 56 461-517 72-130 (297)
108 PRK09989 hypothetical protein; 58.9 96 0.0021 32.2 11.1 43 63-119 16-58 (258)
109 PLN02361 alpha-amylase 58.9 23 0.00049 40.0 6.7 57 65-121 32-96 (401)
110 PRK12677 xylose isomerase; Pro 58.5 87 0.0019 35.1 11.3 92 60-169 29-124 (384)
111 PF14587 Glyco_hydr_30_2: O-Gl 57.6 62 0.0014 36.2 9.7 121 90-225 93-226 (384)
112 TIGR02100 glgX_debranch glycog 57.2 17 0.00038 43.8 5.8 55 67-121 189-265 (688)
113 PRK14510 putative bifunctional 56.7 17 0.00038 46.6 6.0 56 66-121 191-267 (1221)
114 PRK14511 maltooligosyl trehalo 55.2 28 0.00061 42.9 7.1 60 60-123 18-91 (879)
115 TIGR02103 pullul_strch alpha-1 54.8 23 0.00049 44.0 6.3 21 101-121 404-424 (898)
116 PRK14507 putative bifunctional 54.1 27 0.00059 46.0 7.1 60 60-123 756-829 (1693)
117 cd06565 GH20_GcnA-like Glycosy 54.0 67 0.0015 34.6 9.2 59 60-121 15-80 (301)
118 cd06589 GH31 The enzymes of gl 53.1 1.9E+02 0.0041 30.4 12.3 65 60-125 22-90 (265)
119 TIGR00419 tim triosephosphate 53.1 27 0.0006 35.7 5.7 45 67-121 73-117 (205)
120 PLN00196 alpha-amylase; Provis 53.0 33 0.00071 39.0 6.9 57 65-121 47-112 (428)
121 COG5309 Exo-beta-1,3-glucanase 52.5 1.2E+02 0.0025 32.6 10.1 116 60-226 61-179 (305)
122 PRK08673 3-deoxy-7-phosphohept 51.5 41 0.0009 37.0 7.1 76 39-121 86-164 (335)
123 TIGR03234 OH-pyruv-isom hydrox 50.4 29 0.00063 35.8 5.6 43 63-119 15-57 (254)
124 PRK03705 glycogen debranching 49.8 28 0.0006 41.8 5.9 55 67-121 184-262 (658)
125 PF08308 PEGA: PEGA domain; I 49.7 16 0.00035 30.2 2.8 47 498-556 3-49 (71)
126 TIGR02102 pullulan_Gpos pullul 49.6 29 0.00062 44.1 6.1 21 101-121 555-575 (1111)
127 COG3623 SgaU Putative L-xylulo 47.9 24 0.00052 36.8 4.2 88 61-169 17-106 (287)
128 PLN02877 alpha-amylase/limit d 47.6 35 0.00077 42.5 6.4 21 101-121 466-486 (970)
129 PRK00042 tpiA triosephosphate 47.2 33 0.00071 36.2 5.3 50 67-122 78-127 (250)
130 smart00854 PGA_cap Bacterial c 46.7 1.9E+02 0.0041 29.8 10.9 44 66-118 64-107 (239)
131 PF02055 Glyco_hydro_30: O-Gly 46.3 1E+02 0.0023 35.8 9.6 274 45-346 74-424 (496)
132 smart00481 POLIIIAc DNA polyme 45.7 59 0.0013 26.4 5.6 44 63-119 16-59 (67)
133 cd06591 GH31_xylosidase_XylS X 45.1 36 0.00077 37.0 5.4 66 60-126 22-91 (319)
134 cd00311 TIM Triosephosphate is 44.9 47 0.001 34.9 6.0 50 67-122 76-125 (242)
135 PRK12858 tagatose 1,6-diphosph 44.3 30 0.00064 38.2 4.6 62 58-121 102-163 (340)
136 TIGR02455 TreS_stutzeri trehal 44.1 63 0.0014 38.6 7.4 75 60-138 76-175 (688)
137 PF08531 Bac_rhamnosid_N: Alph 43.2 73 0.0016 31.4 6.8 55 498-553 7-68 (172)
138 KOG0259 Tyrosine aminotransfer 41.8 36 0.00077 38.0 4.7 64 53-120 173-238 (447)
139 PRK08645 bifunctional homocyst 41.6 74 0.0016 37.9 7.7 109 45-169 461-578 (612)
140 cd06545 GH18_3CO4_chitinase Th 41.4 1.2E+02 0.0026 31.6 8.5 96 92-216 36-132 (253)
141 PRK09856 fructoselysine 3-epim 41.4 38 0.00083 35.3 4.8 55 63-121 91-149 (275)
142 cd06602 GH31_MGAM_SI_GAA This 41.2 45 0.00097 36.6 5.5 74 54-128 13-93 (339)
143 cd07381 MPP_CapA CapA and rela 40.8 2.7E+02 0.0059 28.5 11.0 45 65-118 67-111 (239)
144 COG3915 Uncharacterized protei 40.7 87 0.0019 30.0 6.4 47 67-119 39-87 (155)
145 COG1306 Uncharacterized conser 39.7 53 0.0012 35.5 5.4 59 60-121 75-144 (400)
146 KOG3833 Uncharacterized conser 39.6 31 0.00067 37.4 3.7 53 63-121 444-499 (505)
147 cd06547 GH85_ENGase Endo-beta- 39.5 79 0.0017 34.9 7.0 115 78-223 32-148 (339)
148 cd06603 GH31_GANC_GANAB_alpha 39.3 49 0.0011 36.2 5.4 68 60-128 22-91 (339)
149 cd06598 GH31_transferase_CtsZ 39.1 53 0.0011 35.6 5.6 67 60-126 22-95 (317)
150 PRK09875 putative hydrolase; P 39.1 1.8E+02 0.004 31.3 9.6 63 61-140 33-95 (292)
151 cd02742 GH20_hexosaminidase Be 39.1 54 0.0012 35.3 5.6 59 59-120 13-91 (303)
152 PF10566 Glyco_hydro_97: Glyco 38.8 84 0.0018 33.7 6.8 115 60-182 30-160 (273)
153 cd06416 GH25_Lys1-like Lys-1 i 37.5 70 0.0015 32.0 5.8 88 51-141 55-157 (196)
154 cd06599 GH31_glycosidase_Aec37 37.4 67 0.0015 34.8 6.0 67 61-127 28-99 (317)
155 PF01120 Alpha_L_fucos: Alpha- 37.0 6E+02 0.013 27.9 16.2 234 66-349 95-341 (346)
156 PRK09267 flavodoxin FldA; Vali 36.8 2.5E+02 0.0055 27.0 9.5 74 42-118 44-117 (169)
157 PRK09432 metF 5,10-methylenete 36.2 84 0.0018 33.9 6.5 86 67-169 168-265 (296)
158 PF01261 AP_endonuc_2: Xylose 36.1 39 0.00084 33.0 3.7 65 61-125 70-136 (213)
159 cd06600 GH31_MGAM-like This fa 35.6 61 0.0013 35.2 5.4 67 60-127 22-90 (317)
160 PRK14565 triosephosphate isome 35.4 65 0.0014 33.7 5.3 50 67-122 77-126 (237)
161 TIGR00676 fadh2 5,10-methylene 35.1 1.4E+02 0.0031 31.6 7.9 108 47-169 125-246 (272)
162 cd06597 GH31_transferase_CtsY 34.4 74 0.0016 35.0 5.8 73 54-126 13-110 (340)
163 PF02228 Gag_p19: Major core p 34.3 19 0.0004 31.1 0.9 39 60-115 20-58 (92)
164 cd06418 GH25_BacA-like BacA is 34.1 2.3E+02 0.0049 29.1 9.0 90 60-171 50-140 (212)
165 PF04914 DltD_C: DltD C-termin 33.8 36 0.00078 32.3 2.8 51 101-170 36-87 (130)
166 COG0366 AmyA Glycosidases [Car 33.5 80 0.0017 35.7 6.2 56 66-121 33-97 (505)
167 PLN02429 triosephosphate isome 33.2 72 0.0015 34.9 5.3 49 68-122 140-188 (315)
168 PF07691 PA14: PA14 domain; I 32.8 2E+02 0.0043 26.5 7.8 71 475-553 47-123 (145)
169 PRK09997 hydroxypyruvate isome 32.7 64 0.0014 33.5 4.8 60 62-121 85-144 (258)
170 COG1523 PulA Type II secretory 32.1 70 0.0015 38.7 5.5 54 68-121 206-285 (697)
171 PLN02784 alpha-amylase 32.1 1.1E+02 0.0023 38.0 7.0 56 65-121 524-588 (894)
172 COG0149 TpiA Triosephosphate i 32.0 98 0.0021 32.8 5.9 72 44-122 58-129 (251)
173 PRK13210 putative L-xylulose 5 31.8 72 0.0016 33.3 5.1 59 62-121 94-153 (284)
174 cd06604 GH31_glucosidase_II_Ma 31.5 82 0.0018 34.5 5.6 73 54-127 13-90 (339)
175 PRK15492 triosephosphate isome 31.0 1E+02 0.0023 32.7 6.0 50 67-122 86-135 (260)
176 COG2876 AroA 3-deoxy-D-arabino 30.8 1.6E+02 0.0034 31.5 7.1 58 60-121 57-116 (286)
177 PRK10076 pyruvate formate lyas 30.4 2E+02 0.0044 29.5 7.9 132 61-219 53-209 (213)
178 PRK14566 triosephosphate isome 30.3 1.1E+02 0.0023 32.6 5.9 49 68-122 88-136 (260)
179 PRK11372 lysozyme inhibitor; P 30.2 1.1E+02 0.0023 28.2 5.2 19 7-25 1-19 (109)
180 PF01055 Glyco_hydro_31: Glyco 29.9 88 0.0019 35.3 5.7 69 60-129 41-111 (441)
181 TIGR03234 OH-pyruv-isom hydrox 29.8 71 0.0015 32.9 4.6 58 62-121 84-143 (254)
182 cd01299 Met_dep_hydrolase_A Me 29.8 1E+02 0.0023 33.1 6.0 61 60-121 118-180 (342)
183 PRK12331 oxaloacetate decarbox 29.6 1.1E+02 0.0024 35.0 6.4 56 54-121 88-143 (448)
184 cd04882 ACT_Bt0572_2 C-termina 29.5 98 0.0021 24.3 4.4 55 61-117 10-64 (65)
185 PLN02561 triosephosphate isome 29.5 1.1E+02 0.0024 32.4 5.9 50 67-122 80-129 (253)
186 cd06595 GH31_xylosidase_XylS-l 29.5 1.1E+02 0.0023 32.9 5.9 66 60-125 23-98 (292)
187 cd00544 CobU Adenosylcobinamid 29.5 3.8E+02 0.0083 26.3 9.4 50 157-214 101-150 (169)
188 PTZ00333 triosephosphate isome 29.2 1.2E+02 0.0026 32.2 6.1 49 68-122 82-130 (255)
189 cd06568 GH20_SpHex_like A subg 29.2 92 0.002 34.1 5.5 61 60-121 16-95 (329)
190 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.5 1.4E+02 0.0029 31.8 6.5 49 59-119 88-136 (275)
191 cd06562 GH20_HexA_HexB-like Be 28.4 2E+02 0.0044 31.6 8.0 62 59-120 15-89 (348)
192 cd06601 GH31_lyase_GLase GLase 28.1 3.6E+02 0.0078 29.6 9.8 72 54-126 13-89 (332)
193 PRK14567 triosephosphate isome 27.9 1.3E+02 0.0028 31.9 6.0 49 68-122 78-126 (253)
194 TIGR00433 bioB biotin syntheta 27.9 93 0.002 32.9 5.1 52 65-119 123-176 (296)
195 PF08306 Glyco_hydro_98M: Glyc 27.6 51 0.0011 35.9 3.0 60 48-118 104-170 (324)
196 PRK05265 pyridoxine 5'-phospha 27.6 89 0.0019 32.8 4.6 48 62-127 113-161 (239)
197 PTZ00372 endonuclease 4-like p 27.5 9.1E+02 0.02 27.5 12.9 80 64-169 143-228 (413)
198 cd06563 GH20_chitobiase-like T 27.1 2.4E+02 0.0051 31.2 8.3 60 59-121 15-106 (357)
199 KOG0470 1,4-alpha-glucan branc 26.5 67 0.0015 38.7 3.9 57 65-121 258-331 (757)
200 PRK09250 fructose-bisphosphate 26.4 79 0.0017 35.0 4.2 49 67-121 151-199 (348)
201 TIGR01698 PUNP purine nucleoti 26.3 91 0.002 32.7 4.5 55 41-95 47-104 (237)
202 PF00728 Glyco_hydro_20: Glyco 26.2 99 0.0021 33.5 5.1 61 60-120 16-92 (351)
203 PF08924 DUF1906: Domain of un 26.1 2.2E+02 0.0047 27.1 6.7 91 60-170 36-127 (136)
204 PF08099 Toxin_27: Scorpion ca 25.8 34 0.00074 24.1 0.8 19 669-687 14-33 (33)
205 COG2179 Predicted hydrolase of 25.7 1.3E+02 0.0028 30.0 5.2 45 67-120 19-68 (175)
206 PRK08227 autoinducer 2 aldolas 25.7 72 0.0016 34.0 3.7 48 66-119 98-145 (264)
207 COG1891 Uncharacterized protei 25.5 25 0.00055 35.1 0.2 65 48-120 117-186 (235)
208 PF00121 TIM: Triosephosphate 25.3 66 0.0014 33.8 3.3 50 67-122 76-125 (244)
209 cd00537 MTHFR Methylenetetrahy 25.1 1.8E+02 0.0039 30.6 6.7 91 65-169 150-249 (274)
210 COG1735 Php Predicted metal-de 25.1 3E+02 0.0066 30.0 8.1 122 65-226 51-173 (316)
211 PF07071 DUF1341: Protein of u 24.6 1.6E+02 0.0035 30.2 5.6 43 64-121 137-182 (218)
212 TIGR00542 hxl6Piso_put hexulos 24.4 1.2E+02 0.0026 31.9 5.1 55 63-121 95-153 (279)
213 KOG4039 Serine/threonine kinas 23.9 1.1E+02 0.0024 30.9 4.3 67 56-127 103-172 (238)
214 TIGR00587 nfo apurinic endonuc 23.9 8.6E+02 0.019 25.5 12.9 84 64-169 13-98 (274)
215 PF03102 NeuB: NeuB family; I 23.8 97 0.0021 32.5 4.2 116 57-212 51-171 (241)
216 PF14307 Glyco_tran_WbsX: Glyc 23.8 1.1E+02 0.0025 33.5 5.0 43 36-81 150-194 (345)
217 KOG1412 Aspartate aminotransfe 23.3 1.7E+02 0.0036 32.1 5.8 62 59-132 130-192 (410)
218 PRK04302 triosephosphate isome 23.0 1.5E+02 0.0032 30.4 5.4 60 54-123 62-123 (223)
219 PRK12595 bifunctional 3-deoxy- 23.0 3.5E+02 0.0075 30.1 8.6 82 31-121 105-189 (360)
220 PF13380 CoA_binding_2: CoA bi 23.0 1.4E+02 0.0031 27.4 4.7 44 59-118 63-106 (116)
221 PRK13396 3-deoxy-7-phosphohept 23.0 4.4E+02 0.0096 29.3 9.2 76 39-121 93-172 (352)
222 cd06564 GH20_DspB_LnbB-like Gl 22.8 1.9E+02 0.004 31.5 6.4 58 60-120 15-101 (326)
223 KOG0622 Ornithine decarboxylas 22.8 1.3E+02 0.0028 34.1 5.0 63 59-122 190-253 (448)
224 PF07488 Glyco_hydro_67M: Glyc 22.8 6.1E+02 0.013 27.8 9.8 138 59-219 54-191 (328)
225 PTZ00372 endonuclease 4-like p 22.8 4.6E+02 0.0099 29.9 9.5 84 38-122 149-240 (413)
226 PF12733 Cadherin-like: Cadher 22.5 1.8E+02 0.0039 24.8 5.0 57 477-550 15-72 (88)
227 COG3684 LacD Tagatose-1,6-bisp 22.3 81 0.0018 33.5 3.2 52 67-121 116-167 (306)
228 cd06570 GH20_chitobiase-like_1 22.1 1.7E+02 0.0036 31.9 5.7 60 59-121 15-88 (311)
229 KOG3625 Alpha amylase [Carbohy 21.9 79 0.0017 39.1 3.3 76 60-144 140-235 (1521)
230 PRK05660 HemN family oxidoredu 21.8 1.1E+02 0.0024 34.0 4.5 49 65-117 107-159 (378)
231 cd07944 DRE_TIM_HOA_like 4-hyd 21.8 1.6E+02 0.0035 31.1 5.5 66 57-122 15-81 (266)
232 COG0156 BioF 7-keto-8-aminopel 21.6 1.3E+02 0.0028 33.9 4.8 68 41-120 136-207 (388)
233 TIGR00539 hemN_rel putative ox 21.6 1.2E+02 0.0026 33.4 4.6 59 50-116 89-151 (360)
234 PRK06703 flavodoxin; Provision 21.6 4.2E+02 0.0091 24.9 7.9 100 42-169 46-148 (151)
235 PRK14040 oxaloacetate decarbox 21.6 1.5E+02 0.0032 35.3 5.6 54 54-119 89-142 (593)
236 cd00019 AP2Ec AP endonuclease 21.3 94 0.002 32.6 3.6 57 62-122 85-144 (279)
237 PRK14582 pgaB outer membrane N 21.2 2E+02 0.0042 34.9 6.5 62 58-119 68-137 (671)
238 TIGR03128 RuMP_HxlA 3-hexulose 20.9 2.2E+02 0.0047 28.4 6.0 41 67-120 68-108 (206)
239 PRK09860 putative alcohol dehy 20.8 2.8E+02 0.0061 30.9 7.4 65 45-122 32-96 (383)
240 PLN02389 biotin synthase 20.6 1.3E+02 0.0029 33.6 4.7 50 65-117 178-229 (379)
241 PF07755 DUF1611: Protein of u 20.5 73 0.0016 34.6 2.5 61 46-121 34-95 (301)
242 TIGR01626 ytfJ_HI0045 conserve 20.4 8.8E+02 0.019 24.4 10.3 76 58-143 70-157 (184)
243 PRK12399 tagatose 1,6-diphosph 20.3 1.3E+02 0.0027 33.0 4.3 63 57-121 100-162 (324)
244 COG2884 FtsE Predicted ATPase 20.3 1E+02 0.0022 31.7 3.3 31 634-664 36-71 (223)
245 PF14701 hDGE_amylase: glucano 20.2 1.9E+02 0.0041 33.0 5.8 104 60-169 20-143 (423)
246 PRK10626 hypothetical protein; 20.1 90 0.0019 32.8 3.0 16 9-24 2-17 (239)
247 TIGR03700 mena_SCO4494 putativ 20.1 84 0.0018 34.6 3.0 51 64-117 149-204 (351)
248 COG5520 O-Glycosyl hydrolase [ 20.1 3.7E+02 0.008 30.1 7.7 84 110-214 111-204 (433)
249 TIGR01361 DAHP_synth_Bsub phos 20.0 2E+02 0.0043 30.4 5.7 81 32-121 13-96 (260)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4.9e-179 Score=1528.01 Aligned_cols=684 Identities=77% Similarity=1.365 Sum_probs=623.8
Q ss_pred HHHHHHHHHhcCCCCccceeeEEEcCCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCC
Q 005416 12 VLLILLLGCSGLFAPVEVEGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 91 (697)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~ 91 (697)
++|+++|.+++.+-.--...+|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||||+|||+||||||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~ 88 (840)
T PLN03059 9 FLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 88 (840)
T ss_pred hhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCC
Confidence 34444433333332222466999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 005416 92 PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (697)
Q Consensus 92 ~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~ 171 (697)
||+|||+|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|+++++++
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhcCCCcceEecCCCCCCcccccCCCCcccccCCCCCCC
Q 005416 172 RLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYCDYFSPNKAY 251 (697)
Q Consensus 172 ~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 251 (697)
++++++||||||+|||||||++.+.++.+|++||+||+++++++|++|||+||++.++++++++++|+.+|+.|.+..+.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~ 248 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDY 248 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCC
Confidence 99999999999999999999986667778999999999999999999999999998778889999999889888887788
Q ss_pred CCceeeecccccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCC
Q 005416 252 KPKMWTEAWTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLR 331 (697)
Q Consensus 252 ~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDydApl~E~G~~~ 331 (697)
+|+|+||||+|||++||++++.|+++|++..++++|++|+|++||||||||||||+||||++++|||||||||+|+|++|
T Consensus 249 ~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t 328 (840)
T PLN03059 249 KPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPR 328 (840)
T ss_pred CCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHHhhcCCcCCCCCcccCCCCccceeeeccCcceeeeeecccccceeEEEeCCceeccCCcceeecCC
Q 005416 332 QPKWGHLKDLHRAIKLCEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPD 411 (697)
Q Consensus 332 ~~ky~~lr~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~ 411 (697)
+|||.+||++|.+++.++++|+..+|....+|+.+++.+|.....|++|+.|++.+.+++|+|+|.+|.||+|||+||||
T Consensus 329 ~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd 408 (840)
T PLN03059 329 EPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPD 408 (840)
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeeccc
Confidence 68999999999999988888877777777889999999998555799999999988899999999999999999999999
Q ss_pred CCccccccceecccccccccccCCCCCCCcccccccC-CccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCCCCcc
Q 005416 412 CKNTVYNTARVGHQSTQMKMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGF 490 (697)
Q Consensus 412 ~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~mEql~~t~d~~GyvlYrT~i~~~~~~~~ 490 (697)
|+.++|+|++|++|++.++.. +....+.|+++.|+ .+...+.++++..++||+++|+|.+||+||+|+|.....+..
T Consensus 409 ~~~~lfnta~v~~q~~~~~~~--~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~ 486 (840)
T PLN03059 409 CKTAVFNTARLGAQSSQMKMN--PVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486 (840)
T ss_pred ccceeeeccccccccceeecc--cccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccc
Confidence 999999999999997766443 34456799999999 444456788999999999999999999999999988766545
Q ss_pred ccCCCcceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCccEEEEEEeccCCccccCCCCccccccccc
Q 005416 491 LRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGP 570 (697)
Q Consensus 491 ~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILvEnmGrvNyG~~~~~~~KGI~G~ 570 (697)
++.+.+++|++.+++|++||||||+++|+++++.....+.++.+++++.|.|+|+||||||||+|||++|++++|||+|+
T Consensus 487 ~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~ 566 (840)
T PLN03059 487 LKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGP 566 (840)
T ss_pred cccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccccccc
Confidence 56777889999999999999999999999999877778888888888889999999999999999999999999999999
Q ss_pred EEecCccCCcccCccCCceEEcCCcccccccccCCCCCCcccccCcccccCCCceEEEEEEECCCCCCCeEEEcCCCceE
Q 005416 571 VTLNGLNEGRRDLSWQKWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKG 650 (697)
Q Consensus 571 V~l~g~~~g~~~L~~~~W~~~~~L~ge~l~~~~~~~~~~~~w~~~~~~~~~~~p~fYk~tF~~p~~~dptfLd~~gwgKG 650 (697)
|+|+|.+.++.+|+++.|.|+++|+||.++|+.+++...+.|.+.+..+..++|+|||++|++|++.|||||||++||||
T Consensus 567 V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG 646 (840)
T PLN03059 567 VTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKG 646 (840)
T ss_pred EEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCe
Confidence 99999888888999999999999999999998876556788976644444567999999999999999999999999999
Q ss_pred EEEECCeeccccccccccCCCCCCCccccccCccccccCCCCCcccC
Q 005416 651 QVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 697 (697)
Q Consensus 651 ~vwVNG~nLGRYW~~~~~~~~~~~c~~~g~y~~~~~~~~c~~psq~~ 697 (697)
+|||||+||||||+.....+.|+.|+|+|.|+++||+||||+|||++
T Consensus 647 ~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 647 QIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred eEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEE
Confidence 99999999999999854444449999999999999999999999986
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-140 Score=1162.65 Aligned_cols=580 Identities=64% Similarity=1.149 Sum_probs=534.0
Q ss_pred eeeEEEcCCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHH
Q 005416 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL 109 (697)
Q Consensus 30 ~~~v~~d~~~~~~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~l 109 (697)
.+.|++|+++|++||+|++++||++||+|++|++|+++|+|+|++|+|+|+||||||+|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 005416 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (697)
Q Consensus 110 a~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE 189 (697)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCcccccCcccHHHHHHHHHHHHhcCCCcceEecCCCCCCcccccCCCCccc-ccCC-CCCCCCCceeeeccccccccc
Q 005416 190 YGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFS-PNKAYKPKMWTEAWTGWYTEF 267 (697)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~w 267 (697)
||.+...+++.+++|++|-+.++...+.++||++|.+.++|+.++++||+.+| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99877667778899999999999999999999999999999999999999999 8887 889999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHh
Q 005416 268 GGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKL 347 (697)
Q Consensus 268 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDydApl~E~G~~~~~ky~~lr~l~~~~~~ 347 (697)
|++++.|++|+++..+++++++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.++|.+|..+..
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hcCCcCCCCCcccCCCCccceeeeccCcceeeeeecccccceeEEEeCCceeccCCcceeecCCCCccccccceeccccc
Q 005416 348 CEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQST 427 (697)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~~~~~t~~v~~~~~ 427 (697)
+++.+..+++....+++.. ..|+.|+.|++..+...+.|++..+.+|+++++|++||++++|+|+++.++
T Consensus 332 ~ep~lv~gd~~~~kyg~~~--------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLR--------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccchh--------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 8887766654443333221 569999999998888899999999999999999999999999999977644
Q ss_pred ccccccCCCCCCCcccccccCCccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCCCCccccCCCcceEEeC-Ccce
Q 005416 428 QMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVM-SAGH 506 (697)
Q Consensus 428 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~mEql~~t~d~~GyvlYrT~i~~~~~~~~~~~~~~~~L~i~-~~~D 506 (697)
|....|+++ +|..+| .+||++|+|.++.+.++ ...|+|. +++|
T Consensus 402 --------------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLKIPLSLGH 445 (649)
T ss_pred --------------cccccCCCc------------cccccC---cceEEEEEEeeccccCC-------CceEeecccccc
Confidence 444455543 466666 88999999999876554 2467888 9999
Q ss_pred EEEEEECCEEEEEEecccCCCeeEEeeeeecccCccEEEEEEeccCCccccCCCCcccccccccEEecCccCCcccCccC
Q 005416 507 ALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQ 586 (697)
Q Consensus 507 ~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILvEnmGrvNyG~~~~~~~KGI~G~V~l~g~~~g~~~L~~~ 586 (697)
++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| ++++++|||+|+|+|+|. ++++++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999987677888888889999999999999999999999 889999999999999997 477777
Q ss_pred CceEEcCCcccccccccCCCCCCcccccCcccccCCCceEEEEEEECCCCCCCeEEEcCCCceEEEEECCeecccccccc
Q 005416 587 KWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAY 666 (697)
Q Consensus 587 ~W~~~~~L~ge~l~~~~~~~~~~~~w~~~~~~~~~~~p~fYk~tF~~p~~~dptfLd~~gwgKG~vwVNG~nLGRYW~~~ 666 (697)
.|.|+++|++|.+.++++++.++++|...+..+..+|.+||+ +|++|++.+||||||+|||||+|||||+|||||||++
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~ 599 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF 599 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC
Confidence 899999999999999999888889998776555456788998 9999999999999999999999999999999999987
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.4e-88 Score=726.56 Aligned_cols=297 Identities=43% Similarity=0.808 Sum_probs=229.4
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 39 ~~~~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccC
Q 005416 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG 198 (697)
Q Consensus 119 lr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 198 (697)
|||||||||||++||+|.||.+++++++||+||.|++++++|+++|+++++ ++|+++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999953
Q ss_pred cccHHHHHHHHHHHHhcCCC-cceEecCCCC--------CCcccccCCCCccccc--------CCCCCCCCCceeeeccc
Q 005416 199 APGRSYTRWAAKMAVGLGTG-VPWIMCKQDD--------APDPLINTCNGFYCDY--------FSPNKAYKPKMWTEAWT 261 (697)
Q Consensus 199 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~~~~~~~~--------~~~~~p~~P~~~~E~~~ 261 (697)
.++++||+.|++++++.+++ ++.++++... .++..+..+.++.|.. ..+.+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 5667776421 2222233333333421 12446889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCc----cccCCCCCCCCcCCCCCchhHHH
Q 005416 262 GWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFI----ATSYDYDAPLDEYGLLRQPKWGH 337 (697)
Q Consensus 262 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~tSYDydApl~E~G~~~~~ky~~ 337 (697)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 799999999999999987654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 005416 338 LKDLHRA 344 (697)
Q Consensus 338 lr~l~~~ 344 (697)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=341.80 Aligned_cols=289 Identities=24% Similarity=0.297 Sum_probs=216.5
Q ss_pred EEEcCCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCceeeccchhHHHHHHHHH
Q 005416 33 VSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (697)
Q Consensus 33 v~~d~~~~~~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 111 (697)
|.+++..+++||+|++++||++||+|+|++.|.+||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 77888 899999
Q ss_pred HcCCEEEEecCc-ccccccCCCCCCeEecccCCeee---------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 005416 112 QAGLYVNLRIGP-YVCAEWNFGGFPVWLKYIPGINF---------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPI 181 (697)
Q Consensus 112 ~~GL~Vilr~GP-yi~aEw~~GG~P~Wl~~~~~~~~---------Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpI 181 (697)
+.||+||||||| ..|.+|..+++|.||..++.-.. ..+++.|++++++.+..|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999987654222 2456678888877444444432 5899999
Q ss_pred EeecccccccCcccccCcccHHHHHHHHHHHHhc-CCCcceEecC-CCCCC-cccccCCC-Ccc----c--ccCCCCCCC
Q 005416 182 ILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCK-QDDAP-DPLINTCN-GFY----C--DYFSPNKAY 251 (697)
Q Consensus 182 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~~~~-~~~----~--~~~~~~~p~ 251 (697)
|+||++||||++.|.+..|.+.+..||++.+-.. ..+.+|=+.- ..+.. -..|.+.+ ... . -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976667778899999999987321 2233331111 00000 01122222 000 0 022222222
Q ss_pred C----Cceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCeeeeeeeeecCCCCC------CCCCCC---C---
Q 005416 252 K----PKMWTEAWTGWY-TEFGGPVPHRP-VEDLAFSVAKFIQKGGSFINYYMYHGGTNFG------RTAGGP---F--- 313 (697)
Q Consensus 252 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 313 (697)
+ +....|.+-+|| +.|..+..... .+.-++.+.+.|..... -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556777788888 77776554444 33335666777777666 6999999999999 777654 2
Q ss_pred ----ccccCCCCCCCCcCCCC
Q 005416 314 ----IATSYDYDAPLDEYGLL 330 (697)
Q Consensus 314 ----~~tSYDydApl~E~G~~ 330 (697)
..|++++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 58999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=4.3e-21 Score=210.72 Aligned_cols=263 Identities=21% Similarity=0.269 Sum_probs=160.5
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 005416 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG 132 (697)
Q Consensus 54 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~G 132 (697)
++|..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677889999999999999999999996 67899999999999999 899999999999999999974 56
Q ss_pred CCCeEecc-cCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCccc
Q 005416 133 GFPVWLKY-IPGINF----------------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY 195 (697)
Q Consensus 133 G~P~Wl~~-~~~~~~----------------Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~ 195 (697)
..|.||.+ .|++.. ..++|.|++++.+++++|++++++ ++.||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcC
Confidence 78999975 566532 134688999999999999888874 458999999999987533
Q ss_pred ccCcccHHHHHHHHHHHHhc-------CC-------------CcceEecCCCC---------------------------
Q 005416 196 EIGAPGRSYTRWAAKMAVGL-------GT-------------GVPWIMCKQDD--------------------------- 228 (697)
Q Consensus 196 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~~--------------------------- 228 (697)
.+..+.++|.+||++++... |. ..|..+.....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788999999988531 11 11222110000
Q ss_pred --CCcccccCCC-------Ccc-------cc-----cC----------------------CCCCCCCCceeeeccccccc
Q 005416 229 --APDPLINTCN-------GFY-------CD-----YF----------------------SPNKAYKPKMWTEAWTGWYT 265 (697)
Q Consensus 229 --~~~~~~~~~~-------~~~-------~~-----~~----------------------~~~~p~~P~~~~E~~~Gwf~ 265 (697)
.|+. .-+.| +.+ +| .+ +...+++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0100 00101 000 00 00 01147899999999999 56
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCC-CCCchhHHHHHHHHHH
Q 005416 266 EFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG-LLRQPKWGHLKDLHRA 344 (697)
Q Consensus 266 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDydApl~E~G-~~~~~ky~~lr~l~~~ 344 (697)
.|+.......+..+....-..++.|+..+.|+=+ ...-+|.-.. ..+-|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6765555555666666666778999998887755 3333342210 136788889 65 6899999999877
Q ss_pred HHh
Q 005416 345 IKL 347 (697)
Q Consensus 345 ~~~ 347 (697)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 653
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.51 E-value=4.8e-13 Score=142.64 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=108.3
Q ss_pred EEEcCCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHH
Q 005416 33 VSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (697)
Q Consensus 33 v~~d~~~~~~~G~p~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 106 (697)
|.+.++.|+|||||++|.|...|... ++++.|+++|++||+||+|+||+ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 67889999999999999999999632 58899999999999999999999 3333334 99
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 005416 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (697)
Q Consensus 107 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 186 (697)
+++|.++||.|+..+.=.-++.|..-|. ......||.+.+.+.+-+++++.+.+ |++.||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 9999999999998762111223322111 12345788888888777777777665 5569999999
Q ss_pred cccccCcccccCcccHHHHHHHHHHHHhcCCCcceEecC
Q 005416 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCK 225 (697)
Q Consensus 187 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 225 (697)
.||-. ...+++.|.+++++.+.+.|+....
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecc
Confidence 99992 3568899999999999999875443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.37 E-value=8.9e-11 Score=137.03 Aligned_cols=159 Identities=17% Similarity=0.119 Sum_probs=110.5
Q ss_pred eeEEEcCCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHH
Q 005416 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (697)
Q Consensus 31 ~~v~~d~~~~~~~G~p~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 104 (697)
++|++++..|+|||+|+++.+.+.|... ++++.|+++|+.||++|+|+||+ . |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----s-h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----S-HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----c-cCCCC-----------H
Confidence 5678899999999999999999998532 57788999999999999999999 3 44422 2
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCeEec-------c-cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 005416 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK-------Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFES 176 (697)
Q Consensus 105 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~-------~-~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~ 176 (697)
+|+++|.++||+|+.... . -|+..|+. + .+....-..+|.+.++..+-+++++.+ ..
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r-------~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIAR-------DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHh-------cc
Confidence 899999999999998752 1 11112221 0 011101123455555444444444333 35
Q ss_pred cCCceEeecccccccCcccccCcccHHHHHHHHHHHHhcCCCcceEec
Q 005416 177 QGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (697)
Q Consensus 177 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (697)
|++.||||-|.||.... ......+++.|.+.+++.+.+.|+...
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 77899999999997541 113457888999999999988887544
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.26 E-value=8.8e-11 Score=143.79 Aligned_cols=259 Identities=18% Similarity=0.194 Sum_probs=153.1
Q ss_pred eeEEEcCCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHH
Q 005416 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (697)
Q Consensus 31 ~~v~~d~~~~~~~G~p~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 104 (697)
++|.++++.|+|||+|+++.|...|... ++++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 4567788899999999999999988422 47889999999999999999999 3444445
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 005416 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (697)
Q Consensus 105 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 184 (697)
+|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.++. .+++.++|++ .+|++.||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~---~~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVY---VDRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 99999999999999876 33332221100 001123566665443 3344445552 3678899999
Q ss_pred cccccccCcccccCcccHHHHHHHHHHHHhcCCCcceEecCCCCCCcccccCCCCccc-----ccCCCCCCCCCceeeec
Q 005416 185 QIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYC-----DYFSPNKAYKPKMWTEA 259 (697)
Q Consensus 185 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~P~~~~E~ 259 (697)
-+.||-+. + . .++.+.+.+++.+.+.|+.. .+.... .+.+...-.|. ..+....+++|++.+|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~~-~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVHY-EEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEEe-CCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999754 2 1 24678888888888887643 221111 11121111121 12223345799999998
Q ss_pred ccccccccCCCCCCCChHHHHHHHHH--HHHhCCee-----e---------eeeeeecCCCCCCCCCCCCccccCCCCCC
Q 005416 260 WTGWYTEFGGPVPHRPVEDLAFSVAK--FIQKGGSF-----I---------NYYMYHGGTNFGRTAGGPFIATSYDYDAP 323 (697)
Q Consensus 260 ~~Gwf~~wG~~~~~~~~~~~~~~~~~--~l~~g~s~-----~---------n~YM~hGGTNfG~~~G~~~~~tSYDydAp 323 (697)
-.+. |... ...++.-..+.+ .+ .|+-+ + .-|+.+|| .||-+. -..++--+.-
T Consensus 514 ~ham----gn~~--g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygG-d~g~~p----~~~~f~~~Gl 581 (1021)
T PRK10340 514 AHAM----GNGP--GGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGG-DYGDYP----NNYNFCIDGL 581 (1021)
T ss_pred Hhcc----CCCC--CCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECC-CCCCCC----CCcCccccee
Confidence 5322 2100 012222221111 00 01110 0 12344555 244221 1122333467
Q ss_pred CCcCCCCCchhHHHHHHHHHHHH
Q 005416 324 LDEYGLLRQPKWGHLKDLHRAIK 346 (697)
Q Consensus 324 l~E~G~~~~~ky~~lr~l~~~~~ 346 (697)
++-++.+ .|.|.+.|.+.+-++
T Consensus 582 v~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 582 IYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred ECCCCCC-ChhHHHHHHhcceEE
Confidence 8889998 599999998865543
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.21 E-value=2.7e-10 Score=139.45 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=107.9
Q ss_pred eeEEEcCCcEEECCeEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHH
Q 005416 31 GSVSYDSKAIAINGKRRILISGSIHYP------RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (697)
Q Consensus 31 ~~v~~d~~~~~~~G~p~~~~~g~~hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 104 (697)
++|++++..|+|||+|+++.+...|.. +++++.++++|+.||++|+|+||+ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 456778889999999999999999842 368899999999999999999999 4444455
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 005416 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (697)
Q Consensus 105 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 184 (697)
+|+++|.|+||+|+-...=..|+-+ |.. . -.+||.|.+++ .+++.++|++ .+|++.||||
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 8999999999999988521111111 110 0 13567776554 4445555552 3678899999
Q ss_pred cccccccCcccccCcccHHHHHHHHHHHHhcCCCcceEec
Q 005416 185 QIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (697)
Q Consensus 185 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (697)
-+.||-+. + .....+.+.+++.+.+.|+...
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 99999764 2 1245677788888888887554
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=2.6e-09 Score=126.70 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=95.9
Q ss_pred eeeEEEcCCcEEECCeEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhH
Q 005416 30 EGSVSYDSKAIAINGKRRILISGSIHYPR-----S-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDL 103 (697)
Q Consensus 30 ~~~v~~d~~~~~~~G~p~~~~~g~~hy~r-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl 103 (697)
=++|+++...|.|||||+++-|..-|.+- . ..+..+++|++||++|+|+||| | |=|+.
T Consensus 283 fR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~~----------- 346 (808)
T COG3250 283 FRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPNS----------- 346 (808)
T ss_pred cEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCCC-----------
Confidence 36788999999999999999999999643 3 4444899999999999999999 3 55543
Q ss_pred HHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 005416 104 VKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIIL 183 (697)
Q Consensus 104 ~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~ 183 (697)
.+|++||.++||+||-.+ ..||-. .| +|+.|++.+..=+++++++.+ |++.|||
T Consensus 347 ~~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIii 400 (808)
T COG3250 347 EEFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIII 400 (808)
T ss_pred HHHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEE
Confidence 399999999999999986 233321 22 678888877766666666555 5679999
Q ss_pred ecccccccC
Q 005416 184 SQIENEYGP 192 (697)
Q Consensus 184 ~QiENEyg~ 192 (697)
|-+.||-|.
T Consensus 401 Ws~gNE~~~ 409 (808)
T COG3250 401 WSLGNESGH 409 (808)
T ss_pred EeccccccC
Confidence 999999875
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.97 E-value=7.9e-09 Score=107.84 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=109.5
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCc-CCCCCCc-eeeccchhHHHHHHHHHHcCCEEEE
Q 005416 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 42 ~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~-hEp~~G~-~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
.+|+++.+.+-+.|... +..-++.++.||++|+|+||+.|.|.. .++.++. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 37999999999999322 227789999999999999999999954 4477764 7767778999999999999999998
Q ss_pred ecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccc--c
Q 005416 120 RIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYE--I 197 (697)
Q Consensus 120 r~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 197 (697)
.+= + .|.|...... -...+...+...++++.|+++++ +..+|++++|=||....... .
T Consensus 81 d~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCcccc
Confidence 752 1 1666322111 01222333444555666666665 34579999999999763211 0
Q ss_pred C----cccHHHHHHHHHHHHhcCCCcceEe
Q 005416 198 G----APGRSYTRWAAKMAVGLGTGVPWIM 223 (697)
Q Consensus 198 ~----~~~~~y~~~l~~~~~~~g~~vp~~~ 223 (697)
. ..-.++.+.+.+.+|+.+.+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0 0114566777778888888776554
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.56 E-value=2.8e-07 Score=84.58 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=57.4
Q ss_pred hhhhcCCCCCCceEEEEEEecCCCCCccccCCCcce-EEeC-CcceEEEEEECCEEEEEEecc-cCCCeeEEeeeeeccc
Q 005416 463 LEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPV-LTVM-SAGHALHVFVNGQLAGTAYGS-LEFPKLTFTEGVNMRA 539 (697)
Q Consensus 463 mEql~~t~d~~GyvlYrT~i~~~~~~~~~~~~~~~~-L~i~-~~~D~a~VfVng~~vG~~~~~-~~~~~~~~~~~i~l~~ 539 (697)
.+..+..++..|++|||+++.....+ .... |.+. +.+++++|||||+++|+.... ..+.+|.++..+ |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecC
Confidence 35556667799999999999754332 1233 4444 789999999999999998732 223345444432 445
Q ss_pred CccEEEEEEeccCC
Q 005416 540 GINKIALLSIAVGL 553 (697)
Q Consensus 540 g~~~L~ILvEnmGr 553 (697)
+.+.|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999996
No 13
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.14 E-value=1.9e-05 Score=83.93 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=85.5
Q ss_pred eeEEEcCCcEE--ECCeEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceee
Q 005416 31 GSVSYDSKAIA--INGKRRILISGSIHYPR-----------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYF 97 (697)
Q Consensus 31 ~~v~~d~~~~~--~~G~p~~~~~g~~hy~r-----------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df 97 (697)
..|++.++.|. .+|++|+|.+..+.+-- ..++.|++++..||++|+||||+|- ..|..
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~----- 79 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK----- 79 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-----
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC-----
Confidence 46788888888 79999999988776522 2567899999999999999999962 23333
Q ss_pred ccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCCh--hHHHHHHHHHHHHHHHHHhccccc
Q 005416 98 EGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG--PFKAEMHKFTKKIVDMMKAERLFE 175 (697)
Q Consensus 98 ~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~--~y~~~~~~~~~~l~~~i~~~~~~~ 175 (697)
|=++++++.++.||+||+..+. |...+-..+| .|-...-.-+.++++.++.+
T Consensus 80 ----nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y---- 133 (314)
T PF03198_consen 80 ----NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY---- 133 (314)
T ss_dssp ------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-----
T ss_pred ----CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC----
Confidence 7789999999999999998642 1222333444 44333333334445556633
Q ss_pred ccCCceEeecccccccCcccc--cCcccHHHHHHHHHHHHhcCC-Ccce
Q 005416 176 SQGGPIILSQIENEYGPMEYE--IGAPGRSYTRWAAKMAVGLGT-GVPW 221 (697)
Q Consensus 176 ~~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 221 (697)
.+++++=+.||.-.-... -.++-++..+.+|+-+++.+. .+|+
T Consensus 134 ---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ---TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 489999999998542110 112335566666666666665 4565
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.05 E-value=1.1e-05 Score=84.32 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=86.8
Q ss_pred CCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHH
Q 005416 85 WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKI 164 (697)
Q Consensus 85 Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l 164 (697)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+...+++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 322222 433 6899987432 345678888888888
Q ss_pred HHHHHhcccccccCCceEeecccccccCccc------cc-CcccHHHHHHHHHHHHhcCCCcceEecC
Q 005416 165 VDMMKAERLFESQGGPIILSQIENEYGPMEY------EI-GAPGRSYTRWAAKMAVGLGTGVPWIMCK 225 (697)
Q Consensus 165 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 225 (697)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+++...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 56899999999533110 01 1234579988889999988888888765
No 15
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.96 E-value=7.9e-05 Score=79.63 Aligned_cols=225 Identities=22% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCcEE-ECCeEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEccc--CCcC-C-------C----CCCceeec
Q 005416 37 SKAIA-INGKRRILISGSIHY---PRSSPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----SPGKYYFE 98 (697)
Q Consensus 37 ~~~~~-~~G~p~~~~~g~~hy---~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h-E-------p----~~G~~df~ 98 (697)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++-|+ |.-. . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 6999999998 4443 3567899999999999999999998765 4322 1 1 12237776
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEEec---CcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 99 GN-----YDLVKFIKLAKQAGLYVNLRI---GPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 99 g~-----~dl~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
.. ..|++.|+.|.++||.+.|-| +||.-+-|-.| | ..| =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 589999999999999975432 23433444332 1 111 136788999999999995
Q ss_pred cccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhcCCCcce-EecCCC-CCCc-----cccc---CCCCc
Q 005416 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPW-IMCKQD-DAPD-----PLIN---TCNGF 240 (697)
Q Consensus 171 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~~-----~~~~---~~~~~ 240 (697)
.+ +|| |=|.||+ . ......++.+.+.+.+++....-+. ++..+. ..+. +-++ ...|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 43 455 8899999 1 1235678888888888886543332 332221 1110 0011 11111
Q ss_pred cc---c-------cCC-CCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 005416 241 YC---D-------YFS-PNKAYKPKMWTEA-WTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGG 291 (697)
Q Consensus 241 ~~---~-------~~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 291 (697)
.. + ... +..|.+|++..|- |.|.-..+.......+++++...+=+.+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 0 011 4568999999994 44443333323344577777655444455565
No 16
>TIGR03356 BGL beta-galactosidase.
Probab=97.89 E-value=2.8e-05 Score=87.41 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
..|+++|++||++|+|++|+-|.|...+|. +|++|.+|....+++|+.|.++||.+|+--=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 358899999999999999999999999999 79999999999999999999999998866411 258999976
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 141 ~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 4577778888888888887773
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.87 E-value=8.3e-05 Score=72.26 Aligned_cols=98 Identities=26% Similarity=0.355 Sum_probs=68.2
Q ss_pred CCCCceEEEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCc-cEEEEEE
Q 005416 470 RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALLS 548 (697)
Q Consensus 470 ~d~~GyvlYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILv 548 (697)
....|+.|||++|..+... .+....|.+.++.+.+.|||||+++|..... ...+.+.++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~--~~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG--YTPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEEST--TS-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCC--cCCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999775332 2345678899999999999999999997653 2345555554567777 9999999
Q ss_pred eccCCccccCCC-CcccccccccEEe
Q 005416 549 IAVGLPNVGPHF-ETWNAGVLGPVTL 573 (697)
Q Consensus 549 EnmGrvNyG~~~-~~~~KGI~G~V~l 573 (697)
.+.....+-+.+ .....||.++|.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEE
Confidence 965543331111 1346899998887
No 18
>PLN02705 beta-amylase
Probab=97.64 E-value=0.00013 Score=82.81 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=63.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 132 (697)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4566789999999999999999999999998 699999996 558899999999996 4554 23444 112
Q ss_pred -CCCeEecc----cCCee
Q 005416 133 -GFPVWLKY----IPGIN 145 (697)
Q Consensus 133 -G~P~Wl~~----~~~~~ 145 (697)
-||.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 38999975 46653
No 19
>PLN02905 beta-amylase
Probab=97.60 E-value=0.00018 Score=81.97 Aligned_cols=79 Identities=20% Similarity=0.458 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC-----
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG----- 132 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G----- 132 (697)
++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ --|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 445688999999999999999999999998 699999996 568899999999996 4554 23443 111
Q ss_pred CCCeEecc----cCCee
Q 005416 133 GFPVWLKY----IPGIN 145 (697)
Q Consensus 133 G~P~Wl~~----~~~~~ 145 (697)
-||.|+.+ +|+|.
T Consensus 359 PLP~WV~e~g~~nPDif 375 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIF 375 (702)
T ss_pred cCCHHHHHhhhcCCCce
Confidence 38999975 46664
No 20
>PLN02801 beta-amylase
Probab=97.59 E-value=0.00019 Score=80.44 Aligned_cols=80 Identities=24% Similarity=0.494 Sum_probs=63.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 132 (697)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++.++++++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5666889999999999999999999999998 599999996 568899999999996 4554 23433 111
Q ss_pred -CCCeEecc----cCCee
Q 005416 133 -GFPVWLKY----IPGIN 145 (697)
Q Consensus 133 -G~P~Wl~~----~~~~~ 145 (697)
-+|.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999975 46653
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.55 E-value=0.00023 Score=80.30 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=63.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 132 (697)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ |+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556889999999999999999999999998 799999996 558899999999996 4554 23443 111
Q ss_pred -CCCeEecc----cCCee
Q 005416 133 -GFPVWLKY----IPGIN 145 (697)
Q Consensus 133 -G~P~Wl~~----~~~~~ 145 (697)
-||.|+.+ +|+|.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999975 46664
No 22
>PLN02803 beta-amylase
Probab=97.51 E-value=0.00028 Score=79.40 Aligned_cols=80 Identities=21% Similarity=0.511 Sum_probs=62.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFG---- 132 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~G---- 132 (697)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+ --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455688999999999999999999999998 599999996 558899999999996 4554 23433 111
Q ss_pred -CCCeEecc----cCCee
Q 005416 133 -GFPVWLKY----IPGIN 145 (697)
Q Consensus 133 -G~P~Wl~~----~~~~~ 145 (697)
-||.|+.+ +|+|.
T Consensus 179 IpLP~WV~e~~~~~pDi~ 196 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLV 196 (548)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 38999975 46664
No 23
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.45 E-value=0.00013 Score=66.92 Aligned_cols=43 Identities=35% Similarity=0.735 Sum_probs=32.7
Q ss_pred CCceEEEEEEECCCCCCCeEEE-----cCCCceEEEEECCeecccccccc
Q 005416 622 QPLTWYRTTFSAPAGNAPLALD-----MGSMGKGQVWVNGQSIGRHWPAY 666 (697)
Q Consensus 622 ~~p~fYk~tF~~p~~~dptfLd-----~~gwgKG~vwVNG~nLGRYW~~~ 666 (697)
.+..|||++|+... .| +.|. .+.+.+++|||||++|||||+..
T Consensus 34 ~g~~~Yrg~F~~~~-~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~ 81 (111)
T PF13364_consen 34 AGYLWYRGTFTGTG-QD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI 81 (111)
T ss_dssp SCEEEEEEEEETTT-EE-EEEE-EEECSSTTEEEEEEETTEEEEEEETTT
T ss_pred CCCEEEEEEEeCCC-cc-eeEEEEeccCCCceEEEEEECCEEeeeecCCC
Confidence 47899999996422 22 3333 35689999999999999999666
No 24
>PLN02161 beta-amylase
Probab=97.42 E-value=0.00046 Score=77.36 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeeccchhHHHHHHHHHHcCCEE--EEecCccccccc--CCC--
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEW--NFG-- 132 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw--~~G-- 132 (697)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++.+++++.||++ ||.+ --|+-- +..
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGGNvGd~~~I 189 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMHLFGGKGGI 189 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCCCCCCccCc
Confidence 3445688999999999999999999999998 799999996 568899999999996 4553 223321 111
Q ss_pred CCCeEecc----cCCeee
Q 005416 133 GFPVWLKY----IPGINF 146 (697)
Q Consensus 133 G~P~Wl~~----~~~~~~ 146 (697)
-||.|+.+ +|+|..
T Consensus 190 pLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYY 207 (531)
T ss_pred cCCHHHHhhhccCCCceE
Confidence 38999975 466643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.18 E-value=0.00043 Score=76.19 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccc----cCCCCCCeE
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE----WNFGGFPVW 137 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE----w~~GG~P~W 137 (697)
.-+..|+++|++|+..|.+.|.|...|.. |++|||+| -+++.+++++.||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45789999999999999999999999997 99999995 66889999999999653221122321 111147999
Q ss_pred ecc---cCCeeeec--------------CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 005416 138 LKY---IPGINFRT--------------ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE 187 (697)
Q Consensus 138 l~~---~~~~~~Rt--------------~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 187 (697)
+.. ..+|.... .... ++..+.|++.....++ ++. +.|..+||.
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE-
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEec
Confidence 974 22442210 1112 5556666666666666 332 578777763
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.97 E-value=0.011 Score=58.15 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcCC-----CC---CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
-.+.++.|+++++.||++|+++|=+= |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+ .
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 46899999999999999999998531 22111 11 2233334456899999999999999998753 1
Q ss_pred cCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHH
Q 005416 129 WNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWA 208 (697)
Q Consensus 129 w~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 208 (697)
-|.|... .|+.. ...+-+.|++.|. . .++++.+.-+|=|-.|+.... ....+..+.|
T Consensus 88 -----~~~~w~~--------~~~~~---~~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDW---EAERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred -----Cchhhhc--------cCHHH---HHHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 1233321 22222 1111222444444 2 245566888999999987642 2346677777
Q ss_pred HHHHHhcCCCcceE
Q 005416 209 AKMAVGLGTGVPWI 222 (697)
Q Consensus 209 ~~~~~~~g~~vp~~ 222 (697)
.+.+++.--+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 77777654455553
No 27
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.96 E-value=0.00094 Score=72.47 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=108.0
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--ccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccc
Q 005416 49 LISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 49 ~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ .
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888887765442 4445555679998875 5699999999999999 89999999999999974221 0
Q ss_pred cccCCCCCCeEecccCCeeeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCccc---------c
Q 005416 127 AEWNFGGFPVWLKYIPGINFRTE-NGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY---------E 196 (697)
Q Consensus 127 aEw~~GG~P~Wl~~~~~~~~Rt~-d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 196 (697)
=|.. ..|.|+...+.. ... .+...+.++++++.++.++++ -|.|..|-|=||-=.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 689999864110 000 123788899999999888772 189999999999632110 0
Q ss_pred cCcccHHHHHHHHHHHHhcCCCcceEecCCC
Q 005416 197 IGAPGRSYTRWAAKMAVGLGTGVPWIMCKQD 227 (697)
Q Consensus 197 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~ 227 (697)
+...+.+|+...-+.+++...++.++.++-+
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1123467899888999998888888887753
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.95 E-value=0.00079 Score=76.46 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEec
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~ 139 (697)
..|+++|+.||++|+|+.|.-+.|...+|. +|++|-+|...-+++|+.+.++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999977653 1346899998
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 140 ~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
+.-+- .++...+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 64332 3567778888888888888873
No 29
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.88 E-value=0.0033 Score=68.43 Aligned_cols=142 Identities=24% Similarity=0.310 Sum_probs=78.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCC-CceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCC
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG 143 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~ 143 (697)
+|.|+.||+.|+|.||.=| |+ .|.. |..|.+ +..+..+.|+++||+|+|.+- |- .-|.--|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCC----CCCCc
Confidence 5899999999999999977 54 4444 555555 566666777899999999863 11 11211110 00111
Q ss_pred eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc--cCcccccCc-cc----HHHHHHHHHHHHhcC
Q 005416 144 INFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEY--GPMEYEIGA-PG----RSYTRWAAKMAVGLG 216 (697)
Q Consensus 144 ~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEy--g~~~~~~~~-~~----~~y~~~l~~~~~~~g 216 (697)
--.-.+-..-.++|..|.+.++..+++ +|=.+=||||.||. |... ..+. .+ ..+++.-.+.+|+.+
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlw-p~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLW-PDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTB-TTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccC-cCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 000113355678899999999999994 45578899999997 4432 1121 11 223444446666655
Q ss_pred CCcce-EecC
Q 005416 217 TGVPW-IMCK 225 (697)
Q Consensus 217 ~~vp~-~~~~ 225 (697)
.++.+ ++.+
T Consensus 168 p~~kV~lH~~ 177 (332)
T PF07745_consen 168 PNIKVMLHLA 177 (332)
T ss_dssp STSEEEEEES
T ss_pred CCCcEEEEEC
Confidence 54443 4444
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.0076 Score=64.39 Aligned_cols=133 Identities=18% Similarity=0.294 Sum_probs=98.1
Q ss_pred HHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCC
Q 005416 71 AKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTEN 150 (697)
Q Consensus 71 ~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d 150 (697)
.|+++.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+ +-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4444444444556699999999999999 5679999999999965 221222 433 5899997633 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC----cc---cccCcccHHHHHHHHHHHHhcCCCcceEe
Q 005416 151 GPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP----ME---YEIGAPGRSYTRWAAKMAVGLGTGVPWIM 223 (697)
Q Consensus 151 ~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 223 (697)
++.++.+++++..++.+++ |-|+.|-|=||-=. +. +..+..+.+|+++.-+.+++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 45999999999722 21 11223578899999999999888877777
Q ss_pred cCC
Q 005416 224 CKQ 226 (697)
Q Consensus 224 ~~~ 226 (697)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 31
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.012 Score=62.03 Aligned_cols=115 Identities=30% Similarity=0.361 Sum_probs=73.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
-.|.|+-+|+.|+|.||+-| ||..--..|.=-=.|+.|+.+.+++|+ ..||+|++.+= | ..-|.- |+- .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y-SDfwaD---Pak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y-SDFWAD---PAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c-hhhccC---hhh-cC
Confidence 46899999999999999854 666543444333346789999998865 57999999851 1 001100 100 00
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 005416 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (697)
Q Consensus 141 ~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg 191 (697)
+|..-.--+-..-.+++-.|.+..+..+++ +|=-+=||||.||-.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~------eGi~pdmVQVGNEtn 182 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKK------EGILPDMVQVGNETN 182 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHH------cCCCccceEeccccC
Confidence 121111123345567788888888888884 444677999999983
No 32
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.0059 Score=68.44 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=73.0
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEcccCCcCCCC----CCceeeccchhHHHHHHHHHHcCCEEEEec----Ccccc
Q 005416 60 SPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPS----PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI----GPYVC 126 (697)
Q Consensus 60 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl~la~~~GL~Vilr~----GPyi~ 126 (697)
....| ++.+..||.+|||+||+++.|..+++. |...+-+-...|+++|+-|++.||+|++.. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 55668 899999999999999999994443553 333322222378999999999999999883 22222
Q ss_pred cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC
Q 005416 127 AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (697)
Q Consensus 127 aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~ 192 (697)
-| ..|....-. ......++..+-+..|+.+.+ +.-.||++|+=||.-+
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 122221100 022334444445555555555 3568999999999853
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.56 E-value=0.0064 Score=69.49 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
.|+++++.||++|+|+.|+-|.|.-..|. +|++|-.|....+++|+.|.++||..++-. + .=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL-------~-H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL-------S-HFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-------e-CCCCCHHHHH
Confidence 48899999999999999999999999997 567898999999999999999999987653 1 1258999976
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 141 ~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
. -+- .++...++..+|.+.+++++.
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 3 332 456667777777777777776
No 34
>PLN02998 beta-glucosidase
Probab=96.48 E-value=0.0027 Score=72.83 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEeccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
.|+++++.||+||+|+-|+-|-|.-.+|. .|.+|-+|...-+++|+.+.++||..++-.= =| -+|.||...
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~~ 154 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALEDE 154 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6788999999999999999999998765431 13 479999763
Q ss_pred -CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 -PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 -~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
-+- .++...++..+|.+.+++++.
T Consensus 155 yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 155 YGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 442 334444555555555555554
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.47 E-value=0.0071 Score=69.05 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
.|+++++.||++|+|+.|+-+.|.-.+|. ++++|-+|....+++|+.|.++||..++-. -.=.+|.||..
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 46999999999999999999999999997 566788888899999999999999987653 12258999875
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 141 ~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
. -+- .++...++..+|.+.+++++.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 332 356666667777777777666
No 36
>PLN02814 beta-glucosidase
Probab=96.35 E-value=0.0035 Score=72.07 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEeccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
.|+++++.||++|+|+-|+-|.|.-.+|. +|.+|-+|...-+++|+.|.++||..++-.= =| -+|.||.+.
T Consensus 78 ry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 149 (504)
T PLN02814 78 KYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLEDE 149 (504)
T ss_pred hhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6889999999999999999999999776531 23 379999764
Q ss_pred -CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 -PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 -~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
-+- .++...++..+|.+.+++++.
T Consensus 150 yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 150 YGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred cCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 332 344455555555555555555
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.30 E-value=0.012 Score=67.35 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEeccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
.|+++++.||++|+|+.|+-|.|.-.+|. .|.+|-.|...-+++|+.|.++||.-++-.= =| .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHHc
Confidence 47899999999999999999999999997 5788999999999999999999998765531 13 489999864
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 ~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
-+- .++...++..+|.+.+++++.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 332 455556666666666666554
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.20 E-value=0.0055 Score=70.09 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEec
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~ 139 (697)
..|+++++.||+||+|+.|+-|.|.-.+|. +|++|=.|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 358999999999999999999999999997 6678888999999999999999998765430 13 4899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 140 ~~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
.. -+- .++...++..+|.+.+++++.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 54 342 344444555555555555554
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.15 E-value=0.016 Score=66.14 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEeccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
.|+++++.||++|+|+-|+-+.|.-.+|. +|.+|-+|...-+++|+.|.++||..++--= =| -+|.||.+.
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 125 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 125 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHHc
Confidence 47899999999999999999999999996 6788888999999999999999999776531 13 489999765
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 ~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
-+- .++...++..+|.+.+++++.
T Consensus 126 GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 126 GDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 432 355556666666666666555
No 40
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.11 E-value=0.0059 Score=69.79 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
.|+++++.||+||+|+.|+-|.|.-.+|. +|++|-.|...-+++|+.|.++||..++-.= =| -+|.||..
T Consensus 68 ry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~~ 139 (476)
T PRK09589 68 RYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLVT 139 (476)
T ss_pred hhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHHH
Confidence 48999999999999999999999999997 5678888999999999999999998776531 13 48999975
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 141 ~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
. -+- .++...++..+|.+.+++++.
T Consensus 140 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 140 EYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred hcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 3 342 234444555555555555554
No 41
>PLN02849 beta-glucosidase
Probab=96.11 E-value=0.0057 Score=70.30 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEeccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
.|+++++.||+||+|+-|+-|.|.-.+|. .|.+|-.|...-+++|+.|.++||.-++--= =| -+|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHHh
Confidence 48999999999999999999999999996 4788888999999999999999999765431 13 479999763
Q ss_pred -CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 -PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 -~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
-+- .++...++..+|.+.+++++.
T Consensus 152 yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 152 YGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred cCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 332 344444555555555555554
No 42
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.65 E-value=0.068 Score=63.00 Aligned_cols=99 Identities=25% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCceEEEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCcc-EEEEEEec
Q 005416 472 ATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGIN-KIALLSIA 550 (697)
Q Consensus 472 ~~GyvlYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~-~L~ILvEn 550 (697)
..|..|||++|..+... .+....|.+.++...|.|||||+.||.-.+. ...+.|.++--|+.|.+ +|.|.|.|
T Consensus 63 ~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~--~~~f~~DIT~~l~~G~~n~L~V~v~n 136 (604)
T PRK10150 63 YVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGG--YTPFEADITPYVYAGKSVRITVCVNN 136 (604)
T ss_pred CcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCC--ccceEEeCchhccCCCceEEEEEEec
Confidence 56889999999875321 2345789999999999999999999987543 23455554434556654 99999987
Q ss_pred cCCc---cccCCCC--------------cccccccccEEecCc
Q 005416 551 VGLP---NVGPHFE--------------TWNAGVLGPVTLNGL 576 (697)
Q Consensus 551 mGrv---NyG~~~~--------------~~~KGI~G~V~l~g~ 576 (697)
.-+. ..|...+ ....||..+|.|.-.
T Consensus 137 ~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 137 ELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred CCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 4221 0111000 135799999998543
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.49 E-value=0.086 Score=50.05 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCCEEEEccc----C-----CcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCe
Q 005416 66 DLIQKAKDGGLDVIQTYVF----W-----NGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 136 (697)
+-++.+|++|+|+|.++.= | ..|.+.|+- . ..-|.+++++|++.||.|++|...- -.|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L---~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL---K-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC---C-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4577899999999998432 2 234444543 1 2356899999999999999997654 34444556899
Q ss_pred EecccCCee-------------eecCChhHHHHHHHHHHHHHHHH
Q 005416 137 WLKYIPGIN-------------FRTENGPFKAEMHKFTKKIVDMM 168 (697)
Q Consensus 137 Wl~~~~~~~-------------~Rt~d~~y~~~~~~~~~~l~~~i 168 (697)
|+...++-+ .-..|.+|++.+.+-+++|+.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644311 11224578877777666666544
No 44
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.16 Score=57.74 Aligned_cols=149 Identities=17% Similarity=0.263 Sum_probs=99.4
Q ss_pred CcEEECCeEeEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHH
Q 005416 38 KAIAINGKRRILISGSIHY-----PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQ 112 (697)
Q Consensus 38 ~~~~~~G~p~~~~~g~~hy-----~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~ 112 (697)
..|.|||.|+++.++..-+ .|..-+.-+-.|+-++++|+|++|+ |.. |.|.- +.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvYEs------d~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVYES------DYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----ccccc------hhHHHHhhh
Confidence 5788999999999988655 2345555677899999999999999 652 44543 499999999
Q ss_pred cCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccC
Q 005416 113 AGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (697)
Q Consensus 113 ~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~ 192 (697)
.||.|--.. =+.||-. ..|..|++.|+.=++.-+.+|+ .++.||.+.=.||=-.
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999885221 1345543 2467888888877777666666 3468888876666210
Q ss_pred --cccccCc-------ccH----HHHHHHHHHHHhcCCCcceEecCC
Q 005416 193 --MEYEIGA-------PGR----SYTRWAAKMAVGLGTGVPWIMCKQ 226 (697)
Q Consensus 193 --~~~~~~~-------~~~----~y~~~l~~~~~~~g~~vp~~~~~~ 226 (697)
.+.-|+. .-+ -|.+-++++.....-..|++++..
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 0000110 112 244556666666667789887664
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.64 E-value=0.13 Score=64.30 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=65.3
Q ss_pred ceEEEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCccEEEEEEeccCC
Q 005416 474 DYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGL 553 (697)
Q Consensus 474 GyvlYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILvEnmGr 553 (697)
|--|||++|.++..- .|.+..|.+.++...+.|||||++||.-.+. ...+.|.+.--|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGS--RLTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCC--CccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999875331 2345789999999999999999999986543 2334555443456788999999975432
Q ss_pred ccccCCCCc----ccccccccEEecCc
Q 005416 554 PNVGPHFET----WNAGVLGPVTLNGL 576 (697)
Q Consensus 554 vNyG~~~~~----~~KGI~G~V~l~g~ 576 (697)
-.| ++. ...||..+|.|--.
T Consensus 183 ~s~---le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STY---LEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCc---cccCCccccccccceEEEEEe
Confidence 222 221 24799999988543
No 46
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.044 Score=61.77 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
.++++++.||+||+|+.|+-|.|...-|..+ +.+=.|.+.-+++++.|.++|+.-++-.= =|+ +|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHhh
Confidence 4789999999999999999999999999655 48888999999999999999999776531 233 7999987
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 141 ~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
. -+- .+..-.++..+|.+.+++++.
T Consensus 132 ~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 132 PYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred ccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 5 242 344445666666666666666
No 47
>PRK09936 hypothetical protein; Provisional
Probab=94.37 E-value=0.16 Score=53.99 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=47.0
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc-hhHHHHHHHHHHcCCEEEEe
Q 005416 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN-YDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~la~~~GL~Vilr 120 (697)
.+++++.|++.++.+++.||+|+-+ =|.---. =||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG~----~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRYGD----ADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--EeeeccC----CCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999999754 4543311 178764 48999999999999999884
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.83 E-value=0.25 Score=61.71 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=63.1
Q ss_pred ceEEEEEEecCCCCCccccCCC-cceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCccEEEEEEeccC
Q 005416 474 DYLWYMTDVKIDPSEGFLRSGN-YPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVG 552 (697)
Q Consensus 474 GyvlYrT~i~~~~~~~~~~~~~-~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILvEnmG 552 (697)
|-.|||++|..+.. + .+. +..|...++.-.+.|||||+++|.-.+. ...+.|.+.--|+.|.|+|.|.|...-
T Consensus 120 ~~gwYrr~F~vp~~--w--~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDES--W--LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChh--h--cCCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEecC
Confidence 67899999987532 1 122 4678899999999999999999986542 234555544346678899999885322
Q ss_pred CccccCCCCc----ccccccccEEecC
Q 005416 553 LPNVGPHFET----WNAGVLGPVTLNG 575 (697)
Q Consensus 553 rvNyG~~~~~----~~KGI~G~V~l~g 575 (697)
. |..+++ ...||..+|.|--
T Consensus 194 d---gs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 194 D---GSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCccccCCceeeccccceEEEEE
Confidence 1 222221 2369999998854
No 49
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=93.23 E-value=0.069 Score=59.78 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=107.4
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcC-CC---CCCcee-eccchhHHHHHHHHHHc
Q 005416 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---SPGKYY-FEGNYDLVKFIKLAKQA 113 (697)
Q Consensus 39 ~~~~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~d-f~g~~dl~~fl~la~~~ 113 (697)
.|.++++++..++..--+.++-.++-+++|+-++.+|++++|+ |-+- |+ ++|.-+ =++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~---fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRL---FILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEE---EEecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 3788888888887777777777778889999999999999999 4455 66 233222 23456789999999999
Q ss_pred CCEEEEecCcccccccCCCCCCe---Eecc-cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 005416 114 GLYVNLRIGPYVCAEWNFGGFPV---WLKY-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (697)
Q Consensus 114 GL~Vilr~GPyi~aEw~~GG~P~---Wl~~-~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE 189 (697)
+|+|+++. |.+-=.+||.-. |.-. .|+-. -.|+.++..-++|...+++-. +....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~y-------k~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPY-------KLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhh-------ccChHHHHHHhcCC
Confidence 99998773 444334566432 2211 13211 125666666777777776644 45568999999999
Q ss_pred ccCcccccCcccHHHHHHHHHHH
Q 005416 190 YGPMEYEIGAPGRSYTRWAAKMA 212 (697)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~ 212 (697)
... .-...+..+++|+++++
T Consensus 148 --~lv-~~p~s~N~f~~w~~emy 167 (587)
T COG3934 148 --PLV-EAPISVNNFWDWSGEMY 167 (587)
T ss_pred --ccc-cccCChhHHHHHHHHHH
Confidence 221 11235678999999986
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.90 E-value=2.6 Score=49.94 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=78.8
Q ss_pred HHH-HHHHHCCCCEEEE-cccCCcCCCCCCce----------eeccchhHHHHHHHHHHcCCEEEEecCccccc-----c
Q 005416 66 DLI-QKAKDGGLDVIQT-YVFWNGHEPSPGKY----------YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCA-----E 128 (697)
Q Consensus 66 ~~l-~k~ka~G~N~V~~-yv~Wn~hEp~~G~~----------df~g~~dl~~fl~la~~~GL~Vilr~GPyi~a-----E 128 (697)
++| .-+|++|+|+|.+ .|+..-....= -| .|....||.+|++.|++.||.|||..=+==++ -
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~w-GY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSW-GYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 343 7779999999998 67643211100 12 34456799999999999999999984321111 1
Q ss_pred cCCCCCCeEecccCC---------eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec--------cccccc
Q 005416 129 WNFGGFPVWLKYIPG---------INFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ--------IENEYG 191 (697)
Q Consensus 129 w~~GG~P~Wl~~~~~---------~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q--------iENEyg 191 (697)
+.+.|.|.|....+. ..+-..+|..++++...++..++...=-.+-..--..++.++ ..||++
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~ 318 (613)
T TIGR01515 239 AEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDG 318 (613)
T ss_pred hccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccC
Confidence 222333444322111 012234454444433333333332110011000001233222 124443
Q ss_pred CcccccCcccHHHHHHHHHHHHhcCCCcceEec
Q 005416 192 PMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (697)
Q Consensus 192 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (697)
.- ......+|++.+.+.+++...++-++.-
T Consensus 319 ~~---~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 319 GR---ENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred Cc---CChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 21 1123568999999999987777655543
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.71 E-value=0.68 Score=50.23 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCC-------cCCC-------CCCceeeccchhHHHHHHHHHHcCCEEEEecCccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEP-------SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp-------~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi 125 (697)
.++.-++.|++++++|+|+|-.-|-+. -.+| .+|. + -|..-|..+|+.|++.||.|..+. .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 567788999999999999997544321 1222 1111 1 122379999999999999998765 111
Q ss_pred ccccC----CCCCCeEec-ccCCeeeec----CCh----hHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 005416 126 CAEWN----FGGFPVWLK-YIPGINFRT----ENG----PFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE 187 (697)
Q Consensus 126 ~aEw~----~GG~P~Wl~-~~~~~~~Rt----~d~----~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE 187 (697)
...-. .-..|.|+. +.++..... .+. +-..+|++|+..++..|.+ .+ +|=++|++
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 11001 123578876 345533332 111 2237788888777666652 22 46677877
No 52
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=91.20 E-value=0.2 Score=48.46 Aligned_cols=45 Identities=33% Similarity=0.616 Sum_probs=36.9
Q ss_pred CCceEEEEEEECCCCC--CCeEEEcCCC-ceEEEEECCeecccccccc
Q 005416 622 QPLTWYRTTFSAPAGN--APLALDMGSM-GKGQVWVNGQSIGRHWPAY 666 (697)
Q Consensus 622 ~~p~fYk~tF~~p~~~--dptfLd~~gw-gKG~vwVNG~nLGRYW~~~ 666 (697)
.+..||+.+|++|... ..++|.+.+- ....|||||+.+|+-....
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~ 114 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY 114 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc
Confidence 4679999999998743 3589999884 6999999999999966443
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=91.05 E-value=0.61 Score=45.88 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCC-------CCCCce-----eeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
.+.+.|.-+|++|+|+|.+-=++...+ -.+..| .|....+|+++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 345667779999999999743322221 111112 344568999999999999999999864433333
No 54
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.54 E-value=5.9 Score=47.26 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHHHCCCCEEEE-ccc-------CCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEecCc-----ccccccCCCC
Q 005416 69 QKAKDGGLDVIQT-YVF-------WNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP-----YVCAEWNFGG 133 (697)
Q Consensus 69 ~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP-----yi~aEw~~GG 133 (697)
.-+|++|+|+|+. .|. |...-.- .=.=.|....||.+|++.|+++||.|||..=| --.+.+..-|
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg 254 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDG 254 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCC
Confidence 5689999999996 332 3221100 00001334579999999999999999988422 1111122223
Q ss_pred CCeEecccC--C-------eeeecCChhH----HHHHHHHHHHH-H-----HHHHhcccccccCCceEeecccccccCcc
Q 005416 134 FPVWLKYIP--G-------INFRTENGPF----KAEMHKFTKKI-V-----DMMKAERLFESQGGPIILSQIENEYGPME 194 (697)
Q Consensus 134 ~P~Wl~~~~--~-------~~~Rt~d~~y----~~~~~~~~~~l-~-----~~i~~~~~~~~~gGpII~~QiENEyg~~~ 194 (697)
-|.+-..++ + ..+...+|.- ++.+.-|+++. + ..++ .+.+.+.+.- -| +.|+||.-.
T Consensus 255 ~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~--~~ly~d~~~~-~~-~~~~~gg~~ 330 (639)
T PRK14706 255 GPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVA--SMLYLDFSRT-EW-VPNIHGGRE 330 (639)
T ss_pred CcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeeh--heeecccCcc-cc-cccccCCcc
Confidence 343322211 1 0122223332 23333343321 0 0011 1111111110 12 678887632
Q ss_pred cccCcccHHHHHHHHHHHHhcCCCcceEec
Q 005416 195 YEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (697)
Q Consensus 195 ~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (697)
...+..|+++|.+.+++...++-++.-
T Consensus 331 ---n~~a~~fl~~ln~~v~~~~p~~~~iAE 357 (639)
T PRK14706 331 ---NLEAIAFLKRLNEVTHHMAPGCMMIAE 357 (639)
T ss_pred ---cHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 234678999999999987766645543
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.51 E-value=3.8 Score=49.66 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEE-cccCC----cCCCCCCc-----eeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 68 IQKAKDGGLDVIQT-YVFWN----GHEPSPGK-----YYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 68 l~k~ka~G~N~V~~-yv~Wn----~hEp~~G~-----~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
|.-+|++|+|+|.. +|+=. -|--.+.- =.|....||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 45310 01111111 124456799999999999999999983
No 56
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=90.51 E-value=0.42 Score=52.83 Aligned_cols=73 Identities=30% Similarity=0.251 Sum_probs=50.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 50 ~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
+|=++++...+.+..+..|++|++.|+..|=| ++|.|+...=+. ...+..+++.|+++||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45677777778889999999999999999999 999999643222 24788999999999999999998755443
No 57
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.29 E-value=6.1 Score=47.85 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------CCcCCC---CCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 62 EMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEP---SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp---~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
+.|++.|.-+|++|+|+|.+ .|+ |..+-. .+ .-.|....+|.+||+.|+++||.|||..=
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34788899999999999996 232 332211 00 11344557999999999999999998843
No 58
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.62 E-value=8.2 Score=46.62 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCcCCCCCCce----eeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 66 DLIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKY----YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
+.|.-+|++|+|+|++ +|+ |...- -|-| .|....+|.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467789999999996 442 33211 0111 3445679999999999999999998533
No 59
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.55 E-value=40 Score=37.79 Aligned_cols=244 Identities=11% Similarity=0.110 Sum_probs=123.6
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCCceeec-cchhHHHHHHHHHHcCCEEEEecCcccc
Q 005416 55 HYPRSSPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 55 hy~r~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
.+.+..++.| .+.+|++|+..|-. +-.|.-....-..-+-. ++.-|.++.+.|+++||++-+=-.+
T Consensus 77 ~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 3444566666 55788899986643 12244332211111111 2334568999999999987663222
Q ss_pred cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHH
Q 005416 127 AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTR 206 (697)
Q Consensus 127 aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~ 206 (697)
-+|.. |.|....+....+.+.+.|.++++.|+.+|.+.|.++ ||-++|- +-..+.. ...--..
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~ 213 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSK 213 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHH
Confidence 26653 4443211111123456778888888888888888732 3445552 1111110 1111245
Q ss_pred HHHHHHHhcCCCc--ceEecCCCCCCcccccCCCCcc--c-ccCCCC-CCCCCceeee-cccccccccCC-CCCCCChHH
Q 005416 207 WAAKMAVGLGTGV--PWIMCKQDDAPDPLINTCNGFY--C-DYFSPN-KAYKPKMWTE-AWTGWYTEFGG-PVPHRPVED 278 (697)
Q Consensus 207 ~l~~~~~~~g~~v--p~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~p~~P~~~~E-~~~Gwf~~wG~-~~~~~~~~~ 278 (697)
.|.+++++...+. .++ ++... .. ... .+.+ + +...+. ....|.-..- .-.+|+-+-++ .....++++
T Consensus 214 ~l~~~~~~~qP~~~~vvv-n~R~~-~~--~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVV-NDRWG-GT--GCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHhCCCCceEEE-Ecccc-cc--CCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 5666776655543 122 22110 00 000 0100 1 111100 0111211111 11245544443 233568899
Q ss_pred HHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCC
Q 005416 279 LAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPA 351 (697)
Q Consensus 279 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDydApl~E~G~~~~~ky~~lr~l~~~~~~~~~~ 351 (697)
+...+.++.++|++++ +| -+-+.+|.+..+.-..|+++...++.....
T Consensus 289 li~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngea 336 (384)
T smart00812 289 LIRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEA 336 (384)
T ss_pred HHHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCce
Confidence 9999999999998842 12 223467777666777899999988865543
No 60
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.41 E-value=7.6 Score=40.91 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCeEec
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLK 139 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~Wl~ 139 (697)
...|++.|+.++++|++.|++-+ +.. ...+...+++ ..++..+.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 46799999999999999999942 222 1223345555 3478899999999999975 443310 1111
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCc---ccHHHHHHHHHHHHhcC
Q 005416 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA---PGRSYTRWAAKMAVGLG 216 (697)
Q Consensus 140 ~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 216 (697)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. ...... .-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122356666666667777776666 32 45666442 111110 000000 11245667777777777
Q ss_pred CCc
Q 005416 217 TGV 219 (697)
Q Consensus 217 ~~v 219 (697)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 765
No 61
>PRK14705 glycogen branching enzyme; Provisional
Probab=87.48 E-value=11 Score=48.11 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCcCCC--CCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.|.-+|++|+|+|+. .|+ |...-. ..=.=.|....||.+|++.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 442 432110 0001124456799999999999999999883
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.02 E-value=2.8 Score=47.18 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------------ccCCcCCCCCCcee-eccchhHHHHHHHHHHcCCEEEEecCccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTY-------------VFWNGHEPSPGKYY-FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~y-------------v~Wn~hEp~~G~~d-f~g~~dl~~fl~la~~~GL~Vilr~GPyi 125 (697)
.+..-.+.|.+++++|+|||-.- .+|.... ||++- =.|..-|...|++|++.||.|+-+.-||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 67778899999999999999732 2244332 44331 23445788999999999999999988887
Q ss_pred ccccCCC---CCCeEeccc-CCee-eecCC-------hhHHHHHHHHHHHH-HHHHHhcccccccCCceEeeccccccc
Q 005416 126 CAEWNFG---GFPVWLKYI-PGIN-FRTEN-------GPFKAEMHKFTKKI-VDMMKAERLFESQGGPIILSQIENEYG 191 (697)
Q Consensus 126 ~aEw~~G---G~P~Wl~~~-~~~~-~Rt~d-------~~y~~~~~~~~~~l-~~~i~~~~~~~~~gGpII~~QiENEyg 191 (697)
-|--..- -.|.|+... |+.. .|... .+..-++..|+..+ ++.++++ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 6632221 135666653 4322 23332 24567889998888 5555533 566788766554
No 63
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.33 E-value=2 Score=49.49 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=42.5
Q ss_pred EEeeCCCCCcccHHHHHHHHH-HCCCCEEEEcccCCcC-C--------CCCC--ceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 52 GSIHYPRSSPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PSPG--KYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 52 g~~hy~r~~~~~W~~~l~k~k-a~G~N~V~~yv~Wn~h-E--------p~~G--~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
|.-|.-..-++.|+..|+.++ +.||..||+ |++- + ..+| .|||+ .||.+++...++||+-.+
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~v 102 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFV 102 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEE
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEE
Confidence 444444556788999999987 779999998 4333 1 1233 29999 899999999999999877
Q ss_pred ecC
Q 005416 120 RIG 122 (697)
Q Consensus 120 r~G 122 (697)
..|
T Consensus 103 el~ 105 (486)
T PF01229_consen 103 ELG 105 (486)
T ss_dssp EE-
T ss_pred EEE
Confidence 765
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.26 E-value=1.5 Score=50.44 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=45.6
Q ss_pred eeCCCCC----cccHH---HHHHHHHHCCCCEEEE-cccCCc-----CCCCC-Cce-------------eeccchhHHHH
Q 005416 54 IHYPRSS----PEMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPSP-GKY-------------YFEGNYDLVKF 106 (697)
Q Consensus 54 ~hy~r~~----~~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~-G~~-------------df~g~~dl~~f 106 (697)
+|.|.++ .+.|. +.|.-+|++|+++|-+ +++-+. |--.+ .-| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4545543 34564 5677789999999987 455432 22221 112 23345799999
Q ss_pred HHHHHHcCCEEEEec
Q 005416 107 IKLAKQAGLYVNLRI 121 (697)
Q Consensus 107 l~la~~~GL~Vilr~ 121 (697)
++.|++.||+||+..
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999985
No 65
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.31 E-value=1.4 Score=46.10 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCC--cee-------eccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYY-------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+.|.-+|++|+|+|.+-=++.-....-| .-| |....+|.++++.|++.||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999997433321111111 112 2335799999999999999999884
No 66
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.30 E-value=11 Score=39.57 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHc-CCEEEE
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA-GLYVNL 119 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~-GL~Vil 119 (697)
..|++.|+.+|++|++.|++-+-...-.. .......+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 67999999999999999999553221111 1111346899999999999 666554
No 67
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=81.73 E-value=3.3 Score=45.04 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=59.8
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-eeeccchhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 50 ~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
+|=++.+.|.+.+.=..-|++|...|+..|-| ++|.|++.. --|. -+.++++.|.++||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56678888999888889999999999999988 999998752 1122 677999999999999999998877655
No 68
>PRK01060 endonuclease IV; Provisional
Probab=81.54 E-value=25 Score=36.87 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE---EEecCcccccccCCCCCCeEecc
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV---NLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
+++.|+.++++|++.|++.+. +-+.-..+.++ ..++.++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 889999999999999999542 11211122222 236888999999999973 22 23331 1
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 141 ~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
.+-+.|+..+++..+.+++.++.-+
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334577777777777777776665
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.32 E-value=13 Score=38.91 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCeEecc
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 47999999999999999999532 1121 01122343 3478999999999999875 3332 10000
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCccc-ccCcccHHHHHHHHHHHHhcCCCc
Q 005416 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY-EIGAPGRSYTRWAAKMAVGLGTGV 219 (697)
Q Consensus 141 ~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 219 (697)
.+.+.|+..+++..+.++++++.-+ .+ |.++|.+---..+..... ..-..-.+.++.|.+++++.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1223456555555566666665555 22 345554321000000000 000012356777888888888765
No 70
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.80 E-value=3.4 Score=48.84 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHCCCCEEEE-ccc-------CCcCC-----CCCCceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 61 PEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHE-----PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hE-----p~~G~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
.+.=.+.|.-+|+||+++|+. .|. |..-- |.. .|..-.||.+||+.|.++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344467888999999999997 232 43211 110 1333479999999999999999997
No 71
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.67 E-value=3.4 Score=48.29 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQT-YVF-------WNGH-----EPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.++|.-+|++|+|+|.+ +|+ |... .+.+ .|....+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34688899999999996 442 3221 1111 24456799999999999999999984
No 72
>PRK12313 glycogen branching enzyme; Provisional
Probab=79.64 E-value=3.7 Score=48.91 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCcCCCC--CCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 68 IQKAKDGGLDVIQT-YVF-------WNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 68 l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
|.-+|++|+|+|.+ +|+ |...-.. .=.-.|....||.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 453 2211000 000134556799999999999999999984
No 73
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.43 E-value=4.2 Score=39.98 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeee
Q 005416 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFR 147 (697)
Q Consensus 68 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~R 147 (697)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 6789999999999955432222111 34789999999999999653211110 100 101123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc--ccccCccc-ccCcccHHHHHHHHHHHHhcCCCc
Q 005416 148 TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE--NEYGPMEY-EIGAPGRSYTRWAAKMAVGLGTGV 219 (697)
Q Consensus 148 t~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE--NEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 219 (697)
+.+++ ++...+.+.+.++..+ .+ |...+.+... +....... ..-..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777777888777777 33 4566766654 22211100 000123457777788888888654
No 74
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.69 E-value=41 Score=37.70 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=53.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----ccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCC
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGF 134 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 134 (697)
++....+++++++++|+..|+.. ++|..-+.+ -..+++++-++++++||.|. +-++-+....+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC-
Confidence 44567799999999999999963 122111110 02357889999999999975 333211111122221
Q ss_pred CeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 135 PVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 135 P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 -----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 -----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334567666665555555555444
No 75
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=77.17 E-value=7.1 Score=42.53 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=69.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCCceeec-c-chhHHHHHHHHHHcCCEEEEecCcccccccC
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFE-G-NYDLVKFIKLAKQAGLYVNLRIGPYVCAEWN 130 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g-~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~ 130 (697)
.++.-++.|+.+++.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++||++|.|+=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 4456788999999999999874 23443333322222111 1 26999999999999999999963222 1111
Q ss_pred CCCCCeEecccC-CeeeecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 005416 131 FGGFPVWLKYIP-GINFRTEN-----GPFKAEMHKFTKKIVDMMKAER 172 (697)
Q Consensus 131 ~GG~P~Wl~~~~-~~~~Rt~d-----~~y~~~~~~~~~~l~~~i~~~~ 172 (697)
....|.|-.+.. +-.-|..+ .+|.+++.+|.-.|++.++..+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 112566665322 21112111 2588999999999999988543
No 76
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=75.88 E-value=7.9 Score=49.51 Aligned_cols=112 Identities=15% Similarity=0.265 Sum_probs=66.3
Q ss_pred cEEECCeEeEEEEE-Ee--eCCCC--CcccHHHHHHHHHHCCCCEEEE-ccc-CC---cCCCCCCcee----e----ccc
Q 005416 39 AIAINGKRRILISG-SI--HYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVF-WN---GHEPSPGKYY----F----EGN 100 (697)
Q Consensus 39 ~~~~~G~p~~~~~g-~~--hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn---~hEp~~G~~d----f----~g~ 100 (697)
.+.|||++++.+.+ ++ ..+++ +-+.|+++|+.+|++|.|+|.. +++ =. ..=...+.+. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 46667733333322 22 34554 5577999999999999999986 344 11 0001122222 3 356
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCcccccccCCCCC-CeEecccCCeeeecCChhHHHH
Q 005416 101 YDLVKFIKLAKQA-GLYVNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKAE 156 (697)
Q Consensus 101 ~dl~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~Wl~~~~~~~~Rt~d~~y~~~ 156 (697)
.|+.++++.|++. ||++|+.. + |+.-+. =.||.++|+.-.-..+.+|+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 7899999999985 99999874 1 222221 2477777764333444455543
No 77
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=75.08 E-value=4.7 Score=47.15 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCcee----------eccchhHHHHHHHHHHcCCEEEEec
Q 005416 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
-+.++|.-+|++|+|+|-+ .++-+-. ....|+ |....+|.++++.|+++||+|||..
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4677889999999999987 3443210 011222 3455799999999999999999874
No 78
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.79 E-value=6.4 Score=46.15 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCcCCCC-CCcee----------eccchhHHHHHHHHHHcCCEEEEec
Q 005416 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS-PGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.++|.-+|++|+++|-+ .++-. |. ..-|| |....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999999987 45422 11 11222 3345799999999999999999874
No 79
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=74.22 E-value=5.6 Score=46.59 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ccCCcCCCCCCce--------eeccc----hhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 62 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPGKY--------YFEGN----YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------df~g~----~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
+.-++.|..|+.+.||.|+.| ..|.+|.|-|+.= |+.++ .-+..+|+.|++.|++++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 466889999999999999999 7899999987643 22332 4678999999999999985422222222
Q ss_pred c--CCCCCCeEecc
Q 005416 129 W--NFGGFPVWLKY 140 (697)
Q Consensus 129 w--~~GG~P~Wl~~ 140 (697)
. ..|-.|.|.+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888753
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=74.10 E-value=50 Score=34.43 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
..+++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 359999999999999999983210 011111 121 2468889999999999985
No 81
>PLN02960 alpha-amylase
Probab=73.41 E-value=7.3 Score=47.69 Aligned_cols=57 Identities=23% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcCCCCC--CceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPSP--GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
++.|.-+|++|+|+|++ .|+ |...-..- =.-.|....+|.+||+.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45688999999999997 443 33211000 00123445799999999999999999984
No 82
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=73.37 E-value=6.3 Score=46.70 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCcCCC----CCCcee----ec--cchhHHHHHHHHHHcCCEEEE
Q 005416 66 DLIQKAKDGGLDVIQT-YVF---------------WNGHEP----SPGKYY----FE--GNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hEp----~~G~~d----f~--g~~dl~~fl~la~~~GL~Vil 119 (697)
+.|.-+|++|+|+|.+ +|+ |...-- -++.|- +- ...+|.+|++.|+++||.|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999996 443 322210 000111 00 136899999999999999999
Q ss_pred ec
Q 005416 120 RI 121 (697)
Q Consensus 120 r~ 121 (697)
..
T Consensus 248 Dv 249 (605)
T TIGR02104 248 DV 249 (605)
T ss_pred EE
Confidence 84
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.87 E-value=34 Score=35.96 Aligned_cols=126 Identities=17% Similarity=0.265 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCeEecc
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++... .++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC-----
Confidence 35999999999999999999432 1111 01122333 2368899999999999875 3322110 000
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCc-------ccHHHHHHHHHHHH
Q 005416 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA-------PGRSYTRWAAKMAV 213 (697)
Q Consensus 141 ~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~ 213 (697)
+-+.|+.-++...+.+++.++..+ .+ |.++|-+. |. ...++. .-.+.++.|.+.++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHH
Confidence 112456666666667777766666 32 45666442 11 000111 11346677778888
Q ss_pred hcCCCc
Q 005416 214 GLGTGV 219 (697)
Q Consensus 214 ~~g~~v 219 (697)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 777755
No 84
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.80 E-value=16 Score=38.94 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=61.1
Q ss_pred eeEEEcCCcEEECCeEeEEEEEE--eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec--cchhHHHH
Q 005416 31 GSVSYDSKAIAINGKRRILISGS--IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE--GNYDLVKF 106 (697)
Q Consensus 31 ~~v~~d~~~~~~~G~p~~~~~g~--~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~f 106 (697)
..|.+. .+.+.|.+++++.|= +| +++.-.+.-+++|++|+..++.|.+=+-.. -+.|. |...|..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHH
Confidence 344442 367766788888883 33 567778889999999999999998873333 23565 56789999
Q ss_pred HHHHHHcCCEEEEec
Q 005416 107 IKLAKQAGLYVNLRI 121 (697)
Q Consensus 107 l~la~~~GL~Vilr~ 121 (697)
-+.|++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999998775
No 85
>PRK10785 maltodextrin glucosidase; Provisional
Probab=72.38 E-value=7.4 Score=46.07 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--cCCCCCCce-----eeccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQT-YVFWN--GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+.|.-+|++|+|+|-+ +||=+ .|---..-| .|.+..||.++++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788899999999997 56532 121111111 14456799999999999999999873
No 86
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=72.07 E-value=6.7 Score=45.18 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCC---CCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEec
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~ 139 (697)
.++++++.||++|+++-|.-|.|+-.=|. .+.-+-.|...-..+|+...++||..++-. | -| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 47899999999999999999999987764 356888888888999999999999976542 1 23 4788776
Q ss_pred c-cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 005416 140 Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (697)
Q Consensus 140 ~-~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 185 (697)
+ .-+-.-+..=.+|+++++--|++...++| .+..=|-+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 33321222234577777777888888887 55444556655554
No 87
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=71.24 E-value=72 Score=33.24 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-eeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccC
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIP 142 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~ 142 (697)
-++.++.+.++|++.|+. ...+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 457899999999999999 555553311 0222 236889999999999986542 3432
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 005416 143 GINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (697)
Q Consensus 143 ~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 185 (697)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777777777665 32 44555543
No 88
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.74 E-value=8.6 Score=46.21 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCcCCCC----CC------------------ceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS----PG------------------KYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|+++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999986 4554433211 11 012444579999999999999999998
Q ss_pred c
Q 005416 121 I 121 (697)
Q Consensus 121 ~ 121 (697)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 89
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=70.18 E-value=43 Score=37.70 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=85.3
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCC----Cceeeccc---hhHHHHHHHHHHcCCEEEEecCccccc
Q 005416 55 HYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGN---YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (697)
Q Consensus 55 hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~la~~~GL~Vilr~GPyi~a 127 (697)
+|+.+..+.-.+.+++++++|++.+-+=--|....... |.+.-+-. .-|..+++.+++.||+.=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46777888889999999999999777655575432211 22221110 248899999999999998888887654
Q ss_pred ccC--CCCCCeEecccCCee---------eecCChhHHHHHHHHHHHHHHHHHhccccc-ccCCceEeecccccccCccc
Q 005416 128 EWN--FGGFPVWLKYIPGIN---------FRTENGPFKAEMHKFTKKIVDMMKAERLFE-SQGGPIILSQIENEYGPMEY 195 (697)
Q Consensus 128 Ew~--~GG~P~Wl~~~~~~~---------~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~-~~gGpII~~QiENEyg~~~~ 195 (697)
.-. .-..|.|+...++.. +-.++|...+++...+.++ ++++++.+ +=..+.-+ .|.|+..
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l---l~~~gidYiK~D~n~~~----~~~~~~~- 202 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL---LREWGIDYIKWDFNRDI----TEAGSPS- 202 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH---HHHTT-SEEEEE-TS-T----TS-SSTT-
T ss_pred chhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH---HHhcCCCEEEeccccCC----CCCCCCC-
Confidence 211 235899998755421 2233555555544444443 44333211 11111111 1222210
Q ss_pred ccCcccHHHHH---HHHHHHHhcCCCcceEecCCC
Q 005416 196 EIGAPGRSYTR---WAAKMAVGLGTGVPWIMCKQD 227 (697)
Q Consensus 196 ~~~~~~~~y~~---~l~~~~~~~g~~vp~~~~~~~ 227 (697)
.++.-..|+. .+.+.+++...+|-+-.|.+.
T Consensus 203 -~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 203 -LPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp -S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred -chHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 0112344554 344555566778877777753
No 90
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=69.42 E-value=7.7 Score=40.69 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667889999999999999998 45666554 34677999999999999999987
No 91
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=69.11 E-value=49 Score=36.35 Aligned_cols=135 Identities=17% Similarity=0.251 Sum_probs=84.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFPV 136 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~ 136 (697)
.++..+..++.+|+.|++.-..|-.|. .|.+-|++-++..- +.+|...|. +.+-.|. =.
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~~ 117 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----RR 117 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----hc
Confidence 567789999999999999999988884 45556666665543 345554443 1122221 01
Q ss_pred EecccCCeeeecCChhHH--HHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHh
Q 005416 137 WLKYIPGINFRTENGPFK--AEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVG 214 (697)
Q Consensus 137 Wl~~~~~~~~Rt~d~~y~--~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 214 (697)
|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.++ +.-++.++.+++.+++
T Consensus 118 w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 118 WDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred cCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 22221222111 1222 234677788888888766656688999987432222 2457899999999999
Q ss_pred cCCCcceEe
Q 005416 215 LGTGVPWIM 223 (697)
Q Consensus 215 ~g~~vp~~~ 223 (697)
.|+.-+.+.
T Consensus 187 ~G~~giyii 195 (345)
T PF14307_consen 187 AGLPGIYII 195 (345)
T ss_pred cCCCceEEE
Confidence 999866544
No 92
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.11 E-value=71 Score=33.16 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
++++|++++++|++.|++. . +. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7889999999999999992 2 11 13688999999999999854
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.96 E-value=17 Score=39.13 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeeccc--hhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
...+..++.++++|+.|+..=.+.+=...+... -+.|.|+-. -|..++++..+++|++|++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 366778999999999996654433332222221 235655532 3899999999999999999988998753
No 94
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=68.35 E-value=2 Score=44.49 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCccccc
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~a 127 (697)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||+||+. +|...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCc
Confidence 5678899999999999999997765554333334 8999999999999999999 44443
No 95
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=67.06 E-value=11 Score=39.27 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
....++-++..|+.||++|++ ..|..+++ ..+..++|+.+++.||+|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366788888999999999998 56666665 347789999999999999988763
No 96
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.64 E-value=43 Score=36.09 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEcccCCcCCCCCCceeecc--chhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 57 PRSSPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
.....+.-++.++++++.|+. +|-+=..| ...-|.|.|+- .-|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 456788889999999999964 55554445 23456666653 34899999999999999999999999854
No 97
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=66.42 E-value=8.8 Score=44.80 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCcee----------eccchhHHHHHHHHHHcCCEEEEe
Q 005416 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr 120 (697)
-+.+.|.-+|++|+|+|-+ +|+=+-. ....|| |....|+.++++.|++.||+|||.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4677899999999999987 3431100 011222 344579999999999999999986
No 98
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=66.41 E-value=12 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=23.1
Q ss_pred CcceEEEEEECCEEEEEEecccCC--CeeEEe
Q 005416 503 SAGHALHVFVNGQLAGTAYGSLEF--PKLTFT 532 (697)
Q Consensus 503 ~~~D~a~VfVng~~vG~~~~~~~~--~~~~~~ 532 (697)
...|.|-||++++++|++++...+ -++.|+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~ 56 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQ 56 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEE
Confidence 568999999999999999986433 344444
No 99
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=66.35 E-value=18 Score=40.60 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
...+.|+++++.+|++|++...+ |+.-+. .+.. .-|...++.|++.|+++++.+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999998 554222 2222 378899999999999999986
No 100
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.81 E-value=12 Score=32.63 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeec-ccCccEEEEEEeccCCc
Q 005416 497 PVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNM-RAGINKIALLSIAVGLP 554 (697)
Q Consensus 497 ~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l-~~g~~~L~ILvEnmGrv 554 (697)
..|++.+-...++-||||+++|..... ..+.+ .+ ..|.++|.+ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 456655446699999999999886432 22322 24 568888887 7888874
No 101
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=62.99 E-value=24 Score=28.67 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|+.|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788999999999999999732 333 58877765 5778999999999998754
No 102
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=62.18 E-value=4.6 Score=47.44 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=26.3
Q ss_pred ccccCCCCCCCCcCCCCCchhHHHHHHHH
Q 005416 314 IATSYDYDAPLDEYGLLRQPKWGHLKDLH 342 (697)
Q Consensus 314 ~~tSYDydApl~E~G~~~~~ky~~lr~l~ 342 (697)
..|||||+||+.|+|+++++||.++|+..
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHH
Confidence 79999999999999998899999999443
No 103
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=60.76 E-value=40 Score=40.50 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=73.7
Q ss_pred eEeEEEEEEeeCCC-CC----cccHHHHHHHHHHCCCCEEE---------------EcccCCcCCCCCCceeeccchhHH
Q 005416 45 KRRILISGSIHYPR-SS----PEMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPSPGKYYFEGNYDLV 104 (697)
Q Consensus 45 ~p~~~~~g~~hy~r-~~----~~~W~~~l~k~ka~G~N~V~---------------~yv~Wn~hEp~~G~~df~g~~dl~ 104 (697)
.+.+++...+-|-- .. .+.-...|+.+|++|+|||- .|++|.+..-+...|| -|
T Consensus 312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~~- 385 (671)
T PRK14582 312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----RV- 385 (671)
T ss_pred CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----HH-
Confidence 34445555444433 22 24467789999999999996 4666733322222333 12
Q ss_pred HHHHHHHHcCCEEEEecCccccc---------ccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccc
Q 005416 105 KFIKLAKQAGLYVNLRIGPYVCA---------EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFE 175 (697)
Q Consensus 105 ~fl~la~~~GL~Vilr~GPyi~a---------Ew~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~ 175 (697)
...++.+.|++|-.+..||-.. +++..+-|.-.. |+-..| =.+|..++++|++.|.+-|+.+
T Consensus 386 -aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~---- 456 (671)
T PRK14582 386 -AWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH---- 456 (671)
T ss_pred -HHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh----
Confidence 3445889999999999998532 121112221111 000112 2357788999999998888842
Q ss_pred ccCCceEeecccccc
Q 005416 176 SQGGPIILSQIENEY 190 (697)
Q Consensus 176 ~~gGpII~~QiENEy 190 (697)
.+|=++|..-+-
T Consensus 457 ---~~~dGilf~Dd~ 468 (671)
T PRK14582 457 ---AAFDGILFHDDA 468 (671)
T ss_pred ---CCCceEEecccc
Confidence 255566655543
No 104
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=60.55 E-value=27 Score=37.35 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=67.9
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 48 ILISGSIHYPRSSPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 48 ~~~~g~~hy~r~~~~-~W~---~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
+.+++..||...|.. ..+ ++|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888665332 222 345444479999999832 34444 7889999999997765444444
Q ss_pred ccc---------cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 124 YVC---------AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 124 yi~---------aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
..+ ++|..--+|.|+.+.=. ....+++...+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57777778999976200 0112334455666677777777777
No 105
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=60.29 E-value=12 Score=32.56 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=25.0
Q ss_pred ccCCceEeeccccc-ccCccccc----Cc-ccHHHHHHHHHH---HHhcCCCcceEe
Q 005416 176 SQGGPIILSQIENE-YGPMEYEI----GA-PGRSYTRWAAKM---AVGLGTGVPWIM 223 (697)
Q Consensus 176 ~~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~~~---~~~~g~~vp~~~ 223 (697)
++.+.|.+|+|-|| -++....+ +. ....|.+||+++ +|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45578999999999 55322111 11 134455555554 566778888753
No 106
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=59.39 E-value=22 Score=43.65 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCC----cCCCCC---C--ceeeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWN----GHEPSP---G--KYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn----~hEp~~---G--~~df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
.-+.+.+.|.-++++|+++|-+ .++=+ .|--.. . .-.|.+..+|.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3445889999999999999976 34311 111100 0 112456789999999999999999998544
No 107
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=59.02 E-value=16 Score=38.67 Aligned_cols=56 Identities=30% Similarity=0.347 Sum_probs=41.1
Q ss_pred chhhhhcCC---CCCCceEEEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEE
Q 005416 461 GLLEQINTT---RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLA 517 (697)
Q Consensus 461 ~~mEql~~t---~d~~GyvlYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~v 517 (697)
.++-.++|. .|-+|.+||+.++....+. ....++...|++.++|-.|.|+|||.-+
T Consensus 72 ss~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 72 SSFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred cchhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceee
Confidence 345555554 4578999999999775443 2333456789999999999999999754
No 108
>PRK09989 hypothetical protein; Provisional
Probab=58.89 E-value=96 Score=32.18 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
-.+++|++++++|+..|++..+|. .+.+.+.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999943332 1366888889999999864
No 109
>PLN02361 alpha-amylase
Probab=58.87 E-value=23 Score=39.99 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---cCCCCCCc-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWN---GHEPSPGK-YY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~-~d----f~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+.|.-++++|+++|-+.=+.. -|--.+.. |+ |....+|.++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 5677788999999998743322 12112211 22 3345799999999999999999875
No 110
>PRK12677 xylose isomerase; Provisional
Probab=58.48 E-value=87 Score=35.10 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec---cchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCC
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFP 135 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P 135 (697)
|+-.+++.++++++.|+..|+.. .+..--|+.+ -...++++.+++++.||.|. +-|.-+.+..+..|+
T Consensus 29 ~~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~-- 100 (384)
T PRK12677 29 PPLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA-- 100 (384)
T ss_pred CCCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc--
Confidence 33457899999999999999883 1111112211 11358899999999999976 544322111122221
Q ss_pred eEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 136 VWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 136 ~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 ----------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 ----------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567776665555555555444
No 111
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=57.57 E-value=62 Score=36.23 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCe----eeec-CChhHHHHHHHHHHHH
Q 005416 90 PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI----NFRT-ENGPFKAEMHKFTKKI 164 (697)
Q Consensus 90 p~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~----~~Rt-~d~~y~~~~~~~~~~l 164 (697)
+..|.|||+....=+.||+.|++.|...++-+- =-.|.|+.+.-.. ...+ -.+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 467999999877777899999999999776531 1367777652110 0000 1245667788888888
Q ss_pred HHHHHhcccccccCCceEeecccccccCcc-------cccC-cccHHHHHHHHHHHHhcCCCcceEecC
Q 005416 165 VDMMKAERLFESQGGPIILSQIENEYGPME-------YEIG-APGRSYTRWAAKMAVGLGTGVPWIMCK 225 (697)
Q Consensus 165 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~ 225 (697)
+++++.+.+ +|--+--=||..... |.+. +.....++.|...+++.|+..-+..|+
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 888863332 555555668875321 1111 134678899999999999986554444
No 112
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=57.19 E-value=17 Score=43.77 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCC---CCCC-----cee----------e---ccchhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQT-YVFWNGHE---PSPG-----KYY----------F---EGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~d----------f---~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.|.-+|++|+|+|.+ +|+=...+ ...| -|| | ....+|.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 45411111 1111 111 1 124689999999999999999984
No 113
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.68 E-value=17 Score=46.61 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCEEEE-cccCCcCCCC---CCc-----ee----------ec--cchhHHHHHHHHHHcCCEEEEec
Q 005416 66 DLIQKAKDGGLDVIQT-YVFWNGHEPS---PGK-----YY----------FE--GNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G~-----~d----------f~--g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.|.-+|++|+|+|.+ .|+=+..|.. .|. |+ |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 5553222211 110 22 23 56799999999999999999984
No 114
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=55.17 E-value=28 Score=42.94 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCcCCCCCC------cee-------eccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPG------KYY-------FEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G------~~d-------f~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
.-+.+.+.|.-++++|+|+|-+ .++ +..+| ..| |.+..++.+|++.|+++||.|||..=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3456889999999999999987 332 22222 112 346689999999999999999998644
No 115
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=54.84 E-value=23 Score=43.96 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 005416 101 YDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+++++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999873
No 116
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.09 E-value=27 Score=45.98 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCcCCCCCC---ce----------eeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPG---KY----------YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G---~~----------df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
+-+.|.+.|.-+|++|+|+|-+- ++ +..+| -| .|.+..+++++++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999873 33 22222 12 2456789999999999999999988544
No 117
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.96 E-value=67 Score=34.64 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCcC-CCC--CCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~h-Ep~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.++-++.++.|...|+|.+..|+- +.-+ |.. +|.|.- .++.++++.|++.|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4577899999999999999998752 3222 111 333332 499999999999999999653
No 118
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=53.07 E-value=1.9e+02 Score=30.41 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCce--eecc--chhHHHHHHHHHHcCCEEEEecCccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKY--YFEG--NYDLVKFIKLAKQAGLYVNLRIGPYV 125 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--df~g--~~dl~~fl~la~~~GL~Vilr~GPyi 125 (697)
..+...+.++.+++.|+-.=.+.+=+...+ ..+.| +|+. --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 666788999999999988555544444333 23555 4432 24899999999999999999987777
No 119
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=53.07 E-value=27 Score=35.67 Aligned_cols=45 Identities=24% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
-..++|++|++.|-+ +|-|.+ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 356799999999998 888876 5544 68999999999999999986
No 120
>PLN00196 alpha-amylase; Provisional
Probab=52.97 E-value=33 Score=39.05 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--CCCCCC-ceee-----ccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQTY-VFWNG--HEPSPG-KYYF-----EGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G-~~df-----~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+.|.-+|++|+++|-+. ++-+. |--.+. -|+. ....+|+++++.|++.||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 577888899999999874 43221 222221 1322 334699999999999999999885
No 121
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=52.54 E-value=1.2e+02 Score=32.57 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=80.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEec
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~ 139 (697)
.-+..+.+|+.++.-+. .||+|- +.-.-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45678899999999887 999963 122368899999999999999864 332
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc--cCcccccC-cccHHHHHHHHHHHHhcC
Q 005416 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEY--GPMEYEIG-APGRSYTRWAAKMAVGLG 216 (697)
Q Consensus 140 ~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEy--g~~~~~~~-~~~~~y~~~l~~~~~~~g 216 (697)
. |- ...+++ .++.++. + +..-..|..+-|.||- +.. .. ..-.+|+...|.++++.|
T Consensus 111 d---------d~--~~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~---~tasql~~~I~~vrsav~~ag 169 (305)
T COG5309 111 D---------DI--HDAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRND---LTASQLIEYIDDVRSAVKEAG 169 (305)
T ss_pred c---------ch--hhhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCC---CCHHHHHHHHHHHHHHHHhcC
Confidence 2 11 122332 4444444 2 1222478899999995 331 11 134679999999999999
Q ss_pred CCcceEecCC
Q 005416 217 TGVPWIMCKQ 226 (697)
Q Consensus 217 ~~vp~~~~~~ 226 (697)
.++|..+.++
T Consensus 170 y~gpV~T~ds 179 (305)
T COG5309 170 YDGPVTTVDS 179 (305)
T ss_pred CCCceeeccc
Confidence 9999988775
No 122
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=51.48 E-value=41 Score=37.00 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=57.5
Q ss_pred cEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc--chhHHHHHHHHHHcCC
Q 005416 39 AIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAGL 115 (697)
Q Consensus 39 ~~~~~G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~GL 115 (697)
.+.+.|.++.++.| +=-+ +++.-.+.-+.+|++|.+.++.|+|- |+---|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36666778888888 3233 56667788888999999999999985 4433467775 5677778888999999
Q ss_pred EEEEec
Q 005416 116 YVNLRI 121 (697)
Q Consensus 116 ~Vilr~ 121 (697)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 998875
No 123
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.35 E-value=29 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
.+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 12578899999999999863
No 124
>PRK03705 glycogen debranching enzyme; Provisional
Probab=49.78 E-value=28 Score=41.83 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCCCCC---C-----cee----------ecc-----chhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----KYY----------FEG-----NYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~d----------f~g-----~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..+|.++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488899999999996 45421111110 1 011 221 2579999999999999999984
No 125
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=49.68 E-value=16 Score=30.17 Aligned_cols=47 Identities=26% Similarity=0.407 Sum_probs=28.1
Q ss_pred eEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCccEEEEEEeccCCccc
Q 005416 498 VLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNV 556 (697)
Q Consensus 498 ~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILvEnmGrvNy 556 (697)
.|.|.+.=.-|.|||||+++|... ..+. .+..|.++|.| +.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCeeE
Confidence 455665555789999999999421 1221 14567655554 55555444
No 126
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=49.55 E-value=29 Score=44.10 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 005416 101 YDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+|.++|+.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 127
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=47.89 E-value=24 Score=36.83 Aligned_cols=88 Identities=13% Similarity=0.331 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCC--CceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEe
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl 138 (697)
.-.|+++|.-+|++||+.|+. +.-|..+ -+.||+.. ....+.+++.+.|+.+ |-+|=.
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~~-er~~l~~ai~etgv~i-----pSmClS---------- 76 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSKE-ERLALVNAIQETGVRI-----PSMCLS---------- 76 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCHH-HHHHHHHHHHHhCCCc-----cchhhh----------
Confidence 346999999999999999999 7788755 36888843 4557888899999843 333311
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 139 ~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
.+....+-+.|+.-++..-..+.+-...-.
T Consensus 77 -aHRRfPfGS~D~~~r~~aleiM~KaI~LA~ 106 (287)
T COG3623 77 -AHRRFPFGSKDEATRQQALEIMEKAIQLAQ 106 (287)
T ss_pred -hhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111112447788887777666666544333
No 128
>PLN02877 alpha-amylase/limit dextrinase
Probab=47.63 E-value=35 Score=42.55 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 005416 101 YDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+++++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999984
No 129
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=47.22 E-value=33 Score=36.21 Aligned_cols=50 Identities=24% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-.+++|++|++.|-+ +|-|.+. .|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----GHSERR~-~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERRQ-YFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----CcccccC-ccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999998 6666553 33312 23344445559999999999987
No 130
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=46.71 E-value=1.9e+02 Score=29.80 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 66 DLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
+.++.|+++|++++.+- |=|| |||. ..-|.+.++.+++.|+..+
T Consensus 64 ~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 64 ENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 46889999999999881 2454 4443 3457788888888888754
No 131
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=46.30 E-value=1e+02 Score=35.77 Aligned_cols=274 Identities=18% Similarity=0.303 Sum_probs=131.5
Q ss_pred eEeEEEEEEee------CCCCCcccHHHHHHHH---HHCCCCEEEEccc--------CCcCCCCCCcee---eccc-hh-
Q 005416 45 KRRILISGSIH------YPRSSPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPSPGKYY---FEGN-YD- 102 (697)
Q Consensus 45 ~p~~~~~g~~h------y~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~~d---f~g~-~d- 102 (697)
+++.=++|++= ..+.+++.=++.|+.+ +-+|++.+|+.|- +...+ .|+-|+ |+-. .|
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 44455777763 2345555544555544 4589999998775 22222 233222 2211 12
Q ss_pred --HHHHHHHHHHc--CCEEEEecCcccccccCCCCCCeEecccCCe----eee-cCChhHHHHHHHHHHHHHHHHHhccc
Q 005416 103 --LVKFIKLAKQA--GLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI----NFR-TENGPFKAEMHKFTKKIVDMMKAERL 173 (697)
Q Consensus 103 --l~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~----~~R-t~d~~y~~~~~~~~~~l~~~i~~~~~ 173 (697)
+.-+|+.|++. +|+++.-| | -.|.|+.....+ .++ ..++.|.++..+|+.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 34577777654 68888877 5 379999764322 244 23467888888888888888874
Q ss_pred ccccCCceEeecccccccCcc---cccCc------ccHHHHH-HHHHHHHhcCC--CcceEecCCC--CCCc---cccc-
Q 005416 174 FESQGGPIILSQIENEYGPME---YEIGA------PGRSYTR-WAAKMAVGLGT--GVPWIMCKQD--DAPD---PLIN- 235 (697)
Q Consensus 174 ~~~~gGpII~~QiENEyg~~~---~~~~~------~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 235 (697)
+|=+|-++-+.||..... ..+.. ..+.++. +|.-++++.++ ++-++..+.. ..+. .++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 455999999999986410 11221 2356665 48888988877 6666554421 1221 1111
Q ss_pred -----CCC--Cccc---c-------cCCCCCCCCCceeeecccccccccCCCCCC---CChHHHHHHHHHHHHhCCeeee
Q 005416 236 -----TCN--GFYC---D-------YFSPNKAYKPKMWTEAWTGWYTEFGGPVPH---RPVEDLAFSVAKFIQKGGSFIN 295 (697)
Q Consensus 236 -----~~~--~~~~---~-------~~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 295 (697)
... +++| + ......|++.++.||-..|.- .|+..... ..++..+..+..-+.++++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 011 1222 1 112347999999999865531 12211111 1123444444455666644 2
Q ss_pred eeee------ecCCCCCCC-CCCCCccccCCCCCCCCcCCC-CCchhHHHHHHHHHHHH
Q 005416 296 YYMY------HGGTNFGRT-AGGPFIATSYDYDAPLDEYGL-LRQPKWGHLKDLHRAIK 346 (697)
Q Consensus 296 ~YM~------hGGTNfG~~-~G~~~~~tSYDydApl~E~G~-~~~~ky~~lr~l~~~~~ 346 (697)
+-++ .||-|++.- ..++..+.. +.+. ..+|.|+.|..+.+|++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~--------~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS--------DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG--------GGTEEEE-HHHHHHHHHHTTS-
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc--------CCCeEEEcHHHHHHHHHhcccC
Confidence 3222 488887532 112221111 1121 22688998888877765
No 132
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=45.66 E-value=59 Score=26.40 Aligned_cols=44 Identities=32% Similarity=0.419 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
..++.++.+|+.|+++|-+ .-|.. +. ...++.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEE
Confidence 4678999999999999988 44442 22 356888999999998874
No 133
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.14 E-value=36 Score=37.00 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
..+.-++.++++++.|+-.=.+.+=|.... ..+ .|+|+-. -|..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 566678899999999887655444443332 234 7777643 38999999999999999988767764
No 134
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=44.92 E-value=47 Score=34.87 Aligned_cols=50 Identities=26% Similarity=0.243 Sum_probs=39.5
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-..++|++|++.|-+ +|-|.+. -|.- .+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR~-~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSERRQ-YFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----CcccccC-cCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 346799999999998 7766654 2332 356888999999999999999987
No 135
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.32 E-value=30 Score=38.19 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 58 RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 58 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
|.+...-.--.+.++++|.++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5554443345678999999999999999954331 0011223489999999999999998874
No 136
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=44.14 E-value=63 Score=38.61 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccc-----CC--cCCCCCCceeec---------cchhHHHHHHHHHHcCCEEEEecC
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQT-YVF-----WN--GHEPSPGKYYFE---------GNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~-yv~-----Wn--~hEp~~G~~df~---------g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
.+..| +-++++|+++|-+ .++ |. +-....|-||=+ -..|++++++.|+++||+||+..=
T Consensus 76 ~~~~w----dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALW----KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHH----HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 44555 4578899999986 232 33 323335667632 347999999999999999997732
Q ss_pred --------cccccccCCCCCCeEe
Q 005416 123 --------PYVCAEWNFGGFPVWL 138 (697)
Q Consensus 123 --------Pyi~aEw~~GG~P~Wl 138 (697)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3888999988889887
No 137
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=43.23 E-value=73 Score=31.38 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=29.9
Q ss_pred eEEeCCcceEEEEEECCEEEEEEec----ccCCCe---eEEeeeeecccCccEEEEEEeccCC
Q 005416 498 VLTVMSAGHALHVFVNGQLAGTAYG----SLEFPK---LTFTEGVNMRAGINKIALLSIAVGL 553 (697)
Q Consensus 498 ~L~i~~~~D~a~VfVng~~vG~~~~----~~~~~~---~~~~~~i~l~~g~~~L~ILvEnmGr 553 (697)
.|.|.... +..+||||+.||.-.- +.-... .++.+.--|++|.|+|.+++-+...
T Consensus 7 ~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 7 RLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 45555443 6689999999987431 100111 1233332367799999999976444
No 138
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=41.82 E-value=36 Score=38.00 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=52.7
Q ss_pred EeeCCC-CCcccHHHHHHHHHHC-CCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 53 SIHYPR-SSPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 53 ~~hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
|+.|+- .|.+.||-+|.-+.++ -=||+.+-|- |=+.|--++|+-. .|.+++++|+++|+.||-.
T Consensus 173 EVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 173 EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred eeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 444444 5999999999999987 7889887543 7778888899877 8999999999999999864
No 139
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=41.59 E-value=74 Score=37.93 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=73.5
Q ss_pred eEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcc
Q 005416 45 KRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPY 124 (697)
Q Consensus 45 ~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPy 124 (697)
++-+.+++..|+.+.+.+.=-++|++-.++|...+-|=.+ ||-+ .+.+|++.|++.++.+|..+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557888999887765554456677777899999999444 3333 78899999988888888777763
Q ss_pred c--------ccccCCCCCCeEeccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 125 V--------CAEWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 125 i--------~aEw~~GG~P~Wl~~~-~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
. ..+|..--+|.|+.+. .. .. +....+++--++..++++.+.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 2 2335555578888762 11 11 223566677777777777666
No 140
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.43 E-value=1.2e+02 Score=31.56 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=54.8
Q ss_pred CCceeec-cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 92 PGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 92 ~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
.|...+. ...++..+++.|++.|++|++..|= |..+. .. .+ ..++. .-+++.+.|.+.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 5666664 3457889999999999999998861 22111 11 00 12333 345678888888886
Q ss_pred cccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhcC
Q 005416 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLG 216 (697)
Q Consensus 171 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 216 (697)
+++ =++.|+=|+.... ...-..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 543 2455666764310 0111235555666555433
No 141
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.41 E-value=38 Score=35.32 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCC----CceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+++.++.++++|..+|.+ |..+.... -.++.. ...|.++.+.|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5567788999999999976 22232211 112211 1368899999999999999987
No 142
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=41.23 E-value=45 Score=36.64 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhH--HHHHHHHHHcCCEEEEecCcccc
Q 005416 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDL--VKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 54 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl--~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
+|..|. +.+..++.++++++.|+..=.+.+=+..+. ..+.|+|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 567788999999999988655544333332 2466776653 377 99999999999999999888887
Q ss_pred cc
Q 005416 127 AE 128 (697)
Q Consensus 127 aE 128 (697)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 143
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=40.83 E-value=2.7e+02 Score=28.50 Aligned_cols=45 Identities=22% Similarity=0.408 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++..++.|+..+
T Consensus 67 ~~~~~~L~~~G~d~~tla---NNH~-----fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 67 PEVADALKAAGFDVVSLA---NNHT-----LDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred HHHHHHHHHhCCCEEEcc---cccc-----cccc-hHHHHHHHHHHHHcCCcee
Confidence 356788999999999981 2454 5543 3356677788888898754
No 144
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.67 E-value=87 Score=30.02 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=35.4
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEE
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vil 119 (697)
.++.+.|.+..+|+|-.+|- +|.-.|+|. .+|-+.+. ++...+.||.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 46778899999999999994 567778886 36666666 5666777764
No 145
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=53 Score=35.48 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc---CCcCCCCCCce--------eeccchhHHHHHHHHHHcCCEEEEec
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF---WNGHEPSPGKY--------YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~--------df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+..-..+++.+|..|+|++-+=+= =++.=|....+ .| .|+..||+.|+|.||++|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 4556778999999999999865221 01111111111 23 389999999999999999995
No 146
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=39.64 E-value=31 Score=37.40 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCE--EE-Eec
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VN-LRI 121 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~--Vi-lr~ 121 (697)
.|++.+++++..|+ +|+..-+--..|..|+.|. |+...+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 59999999999998 6788778888999999886 899999999999996 44 776
No 147
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=39.50 E-value=79 Score=34.86 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=65.7
Q ss_pred EEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCeeeecCChhHHHHH
Q 005416 78 VIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEM 157 (697)
Q Consensus 78 ~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~ 157 (697)
.|.+.|+|+++--+. -=...++.|+++|++|+--. .-||+ +-+.|+.. .+.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~----lL~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED----FLKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH----Hhcc-Cc---ccc
Confidence 477888899854221 00267899999999997422 33565 33455542 1111 11 123
Q ss_pred HHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhc--CCCcceEe
Q 005416 158 HKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL--GTGVPWIM 223 (697)
Q Consensus 158 ~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 223 (697)
.++.++|++..+.+.+ + | +.+-+||..+... ....-.++++.|++++++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5677888887775443 2 3 6777788763110 0113356777778887764 33455664
No 148
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=39.33 E-value=49 Score=36.24 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCcccccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aE 128 (697)
..+.-++.++++++.|+..=.+.+=+.. ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5666788999999999876555433221 234556777543 3889999999999999999998998754
No 149
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.12 E-value=53 Score=35.63 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc--cCCcCCC---CCCceeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYV--FWNGHEP---SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv--~Wn~hEp---~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
..+..++.++++++.|+-.=.+.+ .|--... .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 466778999999999987555444 3422111 2346666533 38999999999999999998877775
No 150
>PRK09875 putative hydrolase; Provisional
Probab=39.12 E-value=1.8e+02 Score=31.30 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecc
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~ 140 (697)
.+.-.+.|+.+|++|.+||-- ..+ ..-.+|...+.+++++-|+.||..+|-|.-.. +|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 344566788899999998843 221 11246999999999999999999999886333 6788764
No 151
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=39.08 E-value=54 Score=35.30 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCcCCC----------------CCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------SPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37788899999999999999999877 754321 1223333 499999999999999998
Q ss_pred Ee
Q 005416 119 LR 120 (697)
Q Consensus 119 lr 120 (697)
-.
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 65
No 152
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.78 E-value=84 Score=33.66 Aligned_cols=115 Identities=20% Similarity=0.292 Sum_probs=67.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc---chhHHHHHHHHHHcCCEEEEecCcccccccCCCCCC-
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG---NYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFP- 135 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g---~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P- 135 (697)
.-+..++-++-+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+- + |..+|-.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 456678889999999999999988887722 244677763 4699999999999999998874 2 2222211
Q ss_pred -------eEecc-----cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 005416 136 -------VWLKY-----IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPII 182 (697)
Q Consensus 136 -------~Wl~~-----~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 182 (697)
.+|.. +.++++=.-+. --+.+-+|+.+|++.-++++|+..=+|++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11110 12222211010 125577889999999998888776666554
No 153
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=37.47 E-value=70 Score=31.95 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=55.1
Q ss_pred EEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCcee--ecc-chhHHHHHHHHHHcCCEEEEecC
Q 005416 51 SGSIHYPRSS-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYY--FEG-NYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 51 ~g~~hy~r~~-----~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d--f~g-~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-|.+||++.. .++.+.-++.++..++.. ...|--.|..++... .+- ...+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3889998653 556777888888765432 112334444333322 111 14678999999999999999888
Q ss_pred cccc----ccc---CCCCCCeEeccc
Q 005416 123 PYVC----AEW---NFGGFPVWLKYI 141 (697)
Q Consensus 123 Pyi~----aEw---~~GG~P~Wl~~~ 141 (697)
++-. +.. +...+|.|+.+.
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 7521 111 145789999864
No 154
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.41 E-value=67 Score=34.84 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCC---CCCceeeccc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 127 (697)
.+.-++.++++++.++-+=.+.+=+....- ....|+|.-. -|..++++..+++|++|++..=|+|+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 456788899999999876555443222211 1234555432 489999999999999999998888853
No 155
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=37.00 E-value=6e+02 Score=27.89 Aligned_cols=234 Identities=11% Similarity=0.091 Sum_probs=100.5
Q ss_pred HHHHHHHHCCCCEEEE-------cccCCcCCCCCCceeeccch-hHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeE
Q 005416 66 DLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFEGNY-DLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVW 137 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~g~~-dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 137 (697)
+-++.+|++|+..|-. +-.|.-.-..-..-+-...+ -+.+|.+.|+++||++-+=-.| ++|.....+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3477899999996653 22254432222222222233 4568999999999988773222 25544332222
Q ss_pred ecccCCeeeecCChhHHHHHH-HHHHHHHHHHHhcccccccCCceEee-cccccccCcccccCcccHHHHHHHHHHHHhc
Q 005416 138 LKYIPGINFRTENGPFKAEMH-KFTKKIVDMMKAERLFESQGGPIILS-QIENEYGPMEYEIGAPGRSYTRWAAKMAVGL 215 (697)
Q Consensus 138 l~~~~~~~~Rt~d~~y~~~~~-~~~~~l~~~i~~~~~~~~~gGpII~~-QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 215 (697)
...... ......+.+.+.+. .++.+|.+.+.+++ +-++| -..... .....-...+.+++++.
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~-------~d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 172 EEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYK-------PDILWFDGGWPD--------PDEDWDSAELYNWIRKL 235 (346)
T ss_dssp CHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCST-------ESEEEEESTTSC--------CCTHHHHHHHHHHHHHH
T ss_pred ccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCC-------cceEEecCCCCc--------cccccCHHHHHHHHHHh
Confidence 211000 00112233444455 34444444444321 11222 111110 11222336677777777
Q ss_pred CCCcceEecCCCCCCcccccCCCCccc-ccCCCC-CCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHhCCe
Q 005416 216 GTGVPWIMCKQDDAPDPLINTCNGFYC-DYFSPN-KAYKPKMWTEA-WTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGGS 292 (697)
Q Consensus 216 g~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s 292 (697)
..++.+............ .+.. +...+. ....|.-...- -.+||-. -.....++++.+...+.+..++|++
T Consensus 236 qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ngn 309 (346)
T PF01120_consen 236 QPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNGN 309 (346)
T ss_dssp STTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTEE
T ss_pred CCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCce
Confidence 666533322111110000 0000 111000 01112211111 1344430 1123345788888888888888877
Q ss_pred eeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhc
Q 005416 293 FINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCE 349 (697)
Q Consensus 293 ~~n~YM~hGGTNfG~~~G~~~~~tSYDydApl~E~G~~~~~ky~~lr~l~~~~~~~~ 349 (697)
++ +| -+.+.+|.+..+.-..||++...++...
T Consensus 310 lL-------------LN------------igP~~dG~ip~~~~~~L~e~G~Wl~~ng 341 (346)
T PF01120_consen 310 LL-------------LN------------IGPDPDGTIPEEQVERLREIGDWLKVNG 341 (346)
T ss_dssp EE-------------EE------------E---TTSS--HHHHHHHHHHHHHHHHHG
T ss_pred EE-------------Ee------------cCCCCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 41 11 2234677776677788899988887543
No 156
>PRK09267 flavodoxin FldA; Validated
Probab=36.76 E-value=2.5e+02 Score=27.04 Aligned_cols=74 Identities=7% Similarity=0.034 Sum_probs=48.6
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 42 ~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
++.-..++++...|....++..|.+-+++++...++...+.+| ....... |-.....-+..+-+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~--~~~~~~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQED--YAEYFCDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCc--chHHHHHHHHHHHHHHHHCCCEEE
Confidence 4455678899999987877888999999888777776666666 2221111 110112246667777888897654
No 157
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=36.17 E-value=84 Score=33.95 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCE--EEEecCc--------ccccccCCCCCCe
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VNLRIGP--------YVCAEWNFGGFPV 136 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~--Vilr~GP--------yi~aEw~~GG~P~ 136 (697)
+|++-.++|.+.+-| +=.||.+ .+.+|++.|++.|+. |+..+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iT----------Q~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAIT----------QFFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeec----------ccccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666799998888 2234544 788999999999954 5555555 23 5667778999
Q ss_pred Eeccc-CCeeeecCC-hhHHHHHHHHHHHHHHHHH
Q 005416 137 WLKYI-PGINFRTEN-GPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 137 Wl~~~-~~~~~Rt~d-~~y~~~~~~~~~~l~~~i~ 169 (697)
|+.+. .. . .+| ...+++--++..++++.+.
T Consensus 234 ~l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFDG--L-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99762 11 1 133 3355566667777777766
No 158
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.13 E-value=39 Score=33.02 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccC-CcCCCCCCceeec-cchhHHHHHHHHHHcCCEEEEecCccc
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~W-n~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyi 125 (697)
.+..++.++.++++|+..|.+...+ +.+....-.=+++ -...|.++++.|+++|+.+.+.+-|+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 3567888999999999999886553 1222111111111 124788899999999999999986543
No 159
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.60 E-value=61 Score=35.18 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 127 (697)
..+..++.++++++.++-.=.+.+=+.... ..+.|+|+.. -|..++++..++.|++|++..=|+|..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 566778999999999987544433322222 3456766543 489999999999999999888788753
No 160
>PRK14565 triosephosphate isomerase; Provisional
Probab=35.37 E-value=65 Score=33.73 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-.+++|++|++.+-+ +|-|.+. .|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS-TFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999998 7777664 23212 22333444889999999999987
No 161
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=35.10 E-value=1.4e+02 Score=31.64 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=66.8
Q ss_pred eEEEEEEeeCCCCCccc----HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE--EEe
Q 005416 47 RILISGSIHYPRSSPEM----WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV--NLR 120 (697)
Q Consensus 47 ~~~~~g~~hy~r~~~~~----W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr 120 (697)
.+.+++..|+.+.|... =.++|++-.++|.+.+-| +=.||.+ .+.+|++.|++.|+.+ +..
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT----------Q~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT----------QLFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee----------ccccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788888877654332 235566777899999988 2235544 7889999999997664 444
Q ss_pred cCccc-------ccccCCCCCCeEecccCCeeeecCC-hhHHHHHHHHHHHHHHHHH
Q 005416 121 IGPYV-------CAEWNFGGFPVWLKYIPGINFRTEN-GPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 121 ~GPyi-------~aEw~~GG~P~Wl~~~~~~~~Rt~d-~~y~~~~~~~~~~l~~~i~ 169 (697)
.-|-. ..+|..-.+|.|+.+.=. .. .++ ....++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~-~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KY-DDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 43422 223556678888875210 01 123 3455566666667766666
No 162
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.45 E-value=74 Score=34.97 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=50.1
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------cCCcCCCC---------CCceeecc---chhHHHHHH
Q 005416 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPS---------PGKYYFEG---NYDLVKFIK 108 (697)
Q Consensus 54 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~df~g---~~dl~~fl~ 108 (697)
+|..|. ..+.-++.++++++.|+..=-+++ .|+-..-. -+.++|.. .-|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 566778999999999997655443 34432221 13333431 127999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 005416 109 LAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 109 la~~~GL~Vilr~GPyi~ 126 (697)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888885
No 163
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=34.27 E-value=19 Score=31.10 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCC
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGL 115 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL 115 (697)
....|-.-+|.+.. .||.|..|||. +|.+||++|-|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 45568777776544 48999999999 99999999987543
No 164
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=34.15 E-value=2.3e+02 Score=29.11 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=64.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl 138 (697)
.+..++..++.++++|+..+.+|....- ....|..+ |..|=..-+++|+++|+. + |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 6788999999999999999999987755 23333333 677889999999999982 2 334444
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 005416 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (697)
Q Consensus 139 ~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~ 171 (697)
.-+.+. .+..+...+..|++.+.+.|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 332221 33347788899999998888743
No 165
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.83 E-value=36 Score=32.31 Aligned_cols=51 Identities=29% Similarity=0.486 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHcCCEEEEecCcccccccC-CCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWN-FGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 101 ~dl~~fl~la~~~GL~Vilr~GPyi~aEw~-~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
.||..+|++|++.|+.|++=.-| +++.|- .-|+ =.+.-++++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~------------------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGL------------------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCC------------------CHHHHHHHHHHHHHHHHH
Confidence 49999999999999998766544 455552 1111 024456778888777774
No 166
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.53 E-value=80 Score=35.73 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEE-cccC---CcCCCCCCce-----eeccchhHHHHHHHHHHcCCEEEEec
Q 005416 66 DLIQKAKDGGLDVIQT-YVFW---NGHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~-yv~W---n~hEp~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.|.-+|.+|+++|-+ .++= ..|.-..-.| .|....|+.++++.|++.||+||+..
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7889999999999965 2331 1221110000 46677899999999999999999873
No 167
>PLN02429 triosephosphate isomerase
Probab=33.19 E-value=72 Score=34.87 Aligned_cols=49 Identities=22% Similarity=0.075 Sum_probs=33.5
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 68 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
.+++|++|++.|-+ +|-|.+. .|.=+ +..+.+=+..|.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR~-~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERRH-VIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccCC-CCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999888 7766654 33311 22333334449999999999987
No 168
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.76 E-value=2e+02 Score=26.48 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=40.3
Q ss_pred eEEEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEEEEEecccC-----CCeeEEeeeeeccc-CccEEEEEE
Q 005416 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLE-----FPKLTFTEGVNMRA-GINKIALLS 548 (697)
Q Consensus 475 yvlYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~-----~~~~~~~~~i~l~~-g~~~L~ILv 548 (697)
.+.++..|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.|.+ +.+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 456788886654431 123333 6788999999999977654321 00112223445655 467888876
Q ss_pred eccCC
Q 005416 549 IAVGL 553 (697)
Q Consensus 549 EnmGr 553 (697)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 55543
No 169
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.68 E-value=64 Score=33.51 Aligned_cols=60 Identities=12% Similarity=-0.072 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999874332211111111111112467788889999999999987
No 170
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=32.12 E-value=70 Score=38.70 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=40.5
Q ss_pred HHHHHHCCCCEEEE-cccCCcCCCCC---C-----------------ceeecc-----chhHHHHHHHHHHcCCEEEEec
Q 005416 68 IQKAKDGGLDVIQT-YVFWNGHEPSP---G-----------------KYYFEG-----NYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 68 l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----------------~~df~g-----~~dl~~fl~la~~~GL~Vilr~ 121 (697)
|.-+|++|+++|+. +|+.-..|+.. | .|--+. .+.+..+|+.++++||-|||..
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999996 67755555433 2 222222 2578899999999999999984
No 171
>PLN02784 alpha-amylase
Probab=32.10 E-value=1.1e+02 Score=37.96 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCC--cee-------eccchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYY-------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.++|.-++++|+++|-+.=+-....+ .| .+| |.-..+|.++++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788889999999987433221111 12 122 2234799999999999999999884
No 172
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.03 E-value=98 Score=32.75 Aligned_cols=72 Identities=21% Similarity=0.083 Sum_probs=45.2
Q ss_pred CeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 44 GKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 44 G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
| ++.+.+=.+|+.-.-.-.=+--..++|++|++.|-+ +|-|.+. .|+= -...+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~E-~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFGE-TDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-cccc-chHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 544444445653211000112345799999999998 7766554 2221 234566888899999999999986
No 173
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.83 E-value=72 Score=33.30 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCC-CceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4467888999999999998631100001111 01110 12468889999999999999987
No 174
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.45 E-value=82 Score=34.47 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=50.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 005416 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (697)
Q Consensus 54 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~a 127 (697)
+|..|. ..+..++.++++++.|+-.=.+.+=+.... .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 355453 566678999999999987544433222222 3445666533 378999999999999999988888864
No 175
>PRK15492 triosephosphate isomerase; Provisional
Probab=31.04 E-value=1e+02 Score=32.69 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-..++|++|++.|-+ +|-|.+. .|.= -+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii----GHSERR~-~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI----GHSERRH-KFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE----Ccccccc-ccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999998 7766654 4432 245666788899999999999987
No 176
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.77 E-value=1.6e+02 Score=31.50 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEec
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~ 121 (697)
..|+-...-+..|++|.+.++- .---|+---|+|.|. .-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 5667777888999999999998 555677777999864 567777777889999998874
No 177
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=30.39 E-value=2e+02 Score=29.47 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=70.4
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--cccCCcCCC---CCC--ceeec-----------c--chhHHHHHHHHHHcCCEEEE
Q 005416 61 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---SPG--KYYFE-----------G--NYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G--~~df~-----------g--~~dl~~fl~la~~~GL~Vil 119 (697)
++.-.+.++++|+.|+.+ |+| |++|...+. .-+ -+|.. | +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678999999999874 555 444422111 111 22322 2 23444667777888888888
Q ss_pred ecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee----cccccccCccc
Q 005416 120 RIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS----QIENEYGPMEY 195 (697)
Q Consensus 120 r~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~----QiENEyg~~~~ 195 (697)
|. |. +|++ ++++.-++++.+|++.+. +. ++..-.=.| .+. ++.=+|-..
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~~llpyh~-~g~~Ky~~lg~~y~~~-- 185 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QIHLLPFHQ-YGEPKYRLLGKTWSMK-- 185 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eEEEecCCc-cchhHHHHcCCcCccC--
Confidence 85 22 2443 345666777777766541 11 110000000 000 111122210
Q ss_pred ccCcccHHHHHHHHHHHHhcCCCc
Q 005416 196 EIGAPGRSYTRWAAKMAVGLGTGV 219 (697)
Q Consensus 196 ~~~~~~~~y~~~l~~~~~~~g~~v 219 (697)
....+..+.++.+++.+++.|+.+
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 186 EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 123467889999999999988876
No 178
>PRK14566 triosephosphate isomerase; Provisional
Probab=30.30 E-value=1.1e+02 Score=32.64 Aligned_cols=49 Identities=24% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 68 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
.+++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 7766654 332 2234567788899999999999987
No 179
>PRK11372 lysozyme inhibitor; Provisional
Probab=30.22 E-value=1.1e+02 Score=28.20 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHhcCCC
Q 005416 7 LGMCNVLLILLLGCSGLFA 25 (697)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (697)
++||.++++++++++++++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCS 19 (109)
T ss_pred CchHHHHHHHHHHHHHHhc
Confidence 5799988777766666664
No 180
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.90 E-value=88 Score=35.28 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCccccccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAEW 129 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~aEw 129 (697)
..+...+.++.+++.|+-.=...+-..... ..+.|.|+.. -|..++++.+++.|+++++..-|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 466678999999999988666544322222 3445555432 38999999999999999999888887664
No 181
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.84 E-value=71 Score=32.93 Aligned_cols=58 Identities=12% Similarity=-0.091 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+.+++.++.++++|..+|.+...+ +...+. +..-.-...|.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGK--RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567888999999999999863221 111100 0000112467888899999999999987
No 182
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.82 E-value=1e+02 Score=33.06 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=43.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCC--CCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999875432111 12211222 2378899999999999987753
No 183
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.58 E-value=1.1e+02 Score=35.03 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=45.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 54 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
..|.+.|.+.-++.++++.++|+..|+++.+-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666788888999999999999999998876653 258889999999999886653
No 184
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.55 E-value=98 Score=24.29 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE
Q 005416 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (697)
Q Consensus 61 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V 117 (697)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 33456788889999999988875 3333234455555533 4889999999999865
No 185
>PLN02561 triosephosphate isomerase
Probab=29.54 E-value=1.1e+02 Score=32.36 Aligned_cols=50 Identities=16% Similarity=0.008 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-..++|++|++.|-+ +|-|.+. .|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 356799999999998 7766654 33322 45677788899999999999987
No 186
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.53 E-value=1.1e+02 Score=32.89 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCcCC------CCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCccc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYV 125 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hE------p~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi 125 (697)
+.+.-++.++++++.|+-+=.+++= |.... ..-+.|+|+-. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 6667889999999999876555442 43221 12346776543 4899999999999999998765543
No 187
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=29.47 E-value=3.8e+02 Score=26.31 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHh
Q 005416 157 MHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVG 214 (697)
Q Consensus 157 ~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 214 (697)
+.+-+.+++..++ ..+.++|.+ .||.|.-.-.+.+..+.|++.|..+-++
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445556666666 245678777 5999874333455678888877666544
No 188
>PTZ00333 triosephosphate isomerase; Provisional
Probab=29.19 E-value=1.2e+02 Score=32.15 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 68 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-.++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----GHSERRQ-YFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46799999999998 6666554 332 2346888999999999999999987
No 189
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.18 E-value=92 Score=34.10 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCCcee---------eccchhHHHHHHHHHHcCCEEEEe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYY---------FEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~d---------f~g~~dl~~fl~la~~~GL~Vilr 120 (697)
+.+..++.|+.|...++|+...++- |.+.-+ ..|.+. +| ..|+.++++.|++.|+.||-.
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT-~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT-QEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEe
Confidence 7888999999999999999998874 654321 122221 11 359999999999999999965
Q ss_pred c
Q 005416 121 I 121 (697)
Q Consensus 121 ~ 121 (697)
+
T Consensus 95 i 95 (329)
T cd06568 95 I 95 (329)
T ss_pred c
Confidence 3
No 190
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.48 E-value=1.4e+02 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
.|.+.-++++++..+.|+..|+++++.+. ...+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEE
Confidence 46666789999999999999999887654 23788999999999998875
No 191
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=28.40 E-value=2e+02 Score=31.60 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCCceeecc---chhHHHHHHHHHHcCCEEEEe
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYYFEG---NYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~df~g---~~dl~~fl~la~~~GL~Vilr 120 (697)
.|.+..++.|+.|....+|+...++- |.+--+ +.|.|.=.| ..|+..+++.|++.|+.||-.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 36888999999999999999998763 554322 123322111 359999999999999999976
No 192
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=28.11 E-value=3.6e+02 Score=29.63 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=53.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 005416 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (697)
Q Consensus 54 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi~ 126 (697)
+|..|. ..+..++.++++++.+|-.=.+++=|..+. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667788999999999987555554444443 3466776543 37899999999999999988888887
No 193
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.94 E-value=1.3e+02 Score=31.93 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 68 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-.++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 6666654 333 2244677788899999999999987
No 194
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=27.86 E-value=93 Score=32.90 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--cCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWN--GHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
++.+++||++|++.|...+=-+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999988754300 111111223333 566788899999998643
No 195
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=27.64 E-value=51 Score=35.88 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=35.6
Q ss_pred EEEEEEeeC------CCCCcccHHHHHHHHHHC-CCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 48 ILISGSIHY------PRSSPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 48 ~~~~g~~hy------~r~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
++.+|. |. .+++.+-+++-.++-... |+|.++- ||..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 345666 73 334555566667766655 8888887 466555443 378899999999999883
No 196
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=27.57 E-value=89 Score=32.78 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-EecCccccc
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCA 127 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyi~a 127 (697)
+.-.+.++++|+.|+ -|+.+| +|.+ +-++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 334677888999998 666654 6666 77899999999866 999999875
No 197
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.45 E-value=9.1e+02 Score=27.54 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCCCEEEEccc----CCcCCCCCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCeE
Q 005416 64 WPDLIQKAKDGGLDVIQTYVF----WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFGGFPVW 137 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~W 137 (697)
....++.+.+.|+|++++++- |..-+..+ .++++|.++|+++||.+ ++-=+||.
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------ 202 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------ 202 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce------------
Confidence 345788899999999999763 65444443 48899999999998852 44345653
Q ss_pred ecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 138 LKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 138 l~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
+.+=+.|+..++...+.+.+-+++-.
T Consensus 203 ------INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ------INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ------ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334566666555555555444444
No 198
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.14 E-value=2.4e+02 Score=31.18 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=45.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCcCCC----------------------------CCCceeeccchhHHHH
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------------------SPGKYYFEGNYDLVKF 106 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------------------~~G~~df~g~~dl~~f 106 (697)
.+.+..++.|+.|...++|+...++- |.+--+ ..|.|- ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888999999999999999998763 432111 123333 3599999
Q ss_pred HHHHHHcCCEEEEec
Q 005416 107 IKLAKQAGLYVNLRI 121 (697)
Q Consensus 107 l~la~~~GL~Vilr~ 121 (697)
++.|++.|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999663
No 199
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.46 E-value=67 Score=38.66 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCCEEEE-cc--------cCCcCCC----CCCceeec----cchhHHHHHHHHHHcCCEEEEec
Q 005416 65 PDLIQKAKDGGLDVIQT-YV--------FWNGHEP----SPGKYYFE----GNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~-yv--------~Wn~hEp----~~G~~df~----g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+++|..+|.+|+|+|+. .| .|..+-- .-+.|--. -..++.++++.|.+.||.|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45588899999999995 22 2443321 00111000 02489999999999999999985
No 200
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=26.38 E-value=79 Score=35.00 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.++.+-++|..+|.+.|+|. +.+...-..+|.+..+.|++.||-||++.
T Consensus 151 sVedAlrLGAdAV~~tvy~G------s~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFG------SEESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred cHHHHHHCCCCEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 46778899999999999998 22223344589999999999999999863
No 201
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.30 E-value=91 Score=32.67 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=38.4
Q ss_pred EECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE-cccCCcCCC-CCCce
Q 005416 41 AINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEP-SPGKY 95 (697)
Q Consensus 41 ~~~G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp-~~G~~ 95 (697)
.+.|+++.++.|..|+..- ...+-+--++-||++|+..|=. --.=.+++. +||.+
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdl 104 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTP 104 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCE
Confidence 4689999999999997654 4444578899999999997654 222233332 46654
No 202
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=26.20 E-value=99 Score=33.52 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCCcee------eccchhHHHHHHHHHHcCCEEEEe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYY------FEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~d------f~g~~dl~~fl~la~~~GL~Vilr 120 (697)
+.+.-++.|+.|...++|++..++- |.+.-+ +.|.+. +=-..|+.++++.|++.|+.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 7788899999999999999998875 443221 122221 111259999999999999999865
No 203
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=26.10 E-value=2.2e+02 Score=27.12 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-cchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl 138 (697)
.+.+.+..++.|+++|+..+-+|.....+. ......++ |..|=..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 467889999999999999999988762111 11111221 567888999999999983 1 344444
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 005416 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (697)
Q Consensus 139 ~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~ 170 (697)
--+-+ ..+..+.+.+..|++.+.+.|..
T Consensus 100 avD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 32212 25677788888888888888874
No 204
>PF08099 Toxin_27: Scorpion calcine family; InterPro: IPR012632 Toxins of the scorpion calcine family bind directly to ryanodine receptors (RyRs), intracellular channel targets of the endoplasmic reticulum, and induce long lasting channel openings in a mode of smaller conductance. They have the ability to translocate into cells by crossing the plasma membrane [, , ]. Toxins of scorpion calcine family are highly basic 33-amino acid peptides that present three disulphide bridges (C1-C4, C2-C5, and C3-C6) and fold along a knottin or inhibitor cystine knot motif (http://knottin.cbs.cnrs.fr) [, , ]. Their three dimensional structure consists of a compact disulphide-bonded core from which emerge loops and the N terminus. The main element of regular secondary structure is a double-stranded antiparallel beta-sheet. A third peripheral extended strand is almost perpendicular to the double-stranded antiparallel beta-sheet [, ]. Scorpion calcine mimic the activating segment of the dihydropyridine receptor II-III loop, which interacts with a region of the ryanodine receptor [, , ]. This family includes: Imperatoxin-A (IpTx A) from Pandinus imperator (Emperor scorpion). Opicalcin-1 and -2 from Opistophthalmus carinatus (African yellow leg scorpion). Maurocalcin (MCa) from Scorpio maurus palmatus (Chactoid scorpion). ; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1IE6_A.
Probab=25.77 E-value=34 Score=24.07 Aligned_cols=19 Identities=37% Similarity=0.812 Sum_probs=12.4
Q ss_pred CCCCC-CCccccccCccccc
Q 005416 669 SGSCG-YCSYTGTYTEKKCL 687 (697)
Q Consensus 669 ~~~~~-~c~~~g~y~~~~~~ 687 (697)
.+||. .|..||+...+.|+
T Consensus 14 ~dccskkckrrgtn~ekrcr 33 (33)
T PF08099_consen 14 KDCCSKKCKRRGTNPEKRCR 33 (33)
T ss_dssp GGBSSS-B--SSSSSSSBB-
T ss_pred cchHHHHhhhcCCChhhccC
Confidence 36776 89999999998884
No 205
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.72 E-value=1.3e+02 Score=29.98 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEE-----EcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 67 LIQKAKDGGLDVIQ-----TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 67 ~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
..+.+++.|+.+|- |-|+|.--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999986 678999999988 8999999999999998763
No 206
>PRK08227 autoinducer 2 aldolase; Validated
Probab=25.66 E-value=72 Score=33.99 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 66 DLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 66 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
-..+.+-++|.++|.++|+|.- .+.-.-..+|.+..+.|++.||-+|.
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4467788999999999999982 12222345899999999999999886
No 207
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.54 E-value=25 Score=35.06 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=42.4
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEE--EcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 48 ILISGSIHYPRS---SPEMWPDLIQKAKDGGLDVIQ--TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 48 ~~~~g~~hy~r~---~~~~W~~~l~k~ka~G~N~V~--~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
.+-+|--.|.|+ .|-... +-..++|++.+- |-| .--.-.|||-...+|..|+++|+++||.+-|-
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 345555556664 333332 236678888654 421 11233699988889999999999999998764
No 208
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=25.26 E-value=66 Score=33.79 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 356799999999998 6666542 222 3456888999999999999999987
No 209
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.09 E-value=1.8e+02 Score=30.65 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcC--CEEEEecCcccc-------cccCCCCCC
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAG--LYVNLRIGPYVC-------AEWNFGGFP 135 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P 135 (697)
.++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.|+..+-|-.. +++-.-++|
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP 216 (274)
T cd00537 150 IKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIP 216 (274)
T ss_pred HHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCC
Confidence 34555555679999999333 3333 7889999999998 556666555322 344456789
Q ss_pred eEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 136 VWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 136 ~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
.|+.+.-. ....+.....+.-.++..++++.+.
T Consensus 217 ~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 217 DWLLERLE-KLKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99875210 0001223345556667777777766
No 210
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=25.09 E-value=3e+02 Score=30.02 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=71.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEecccCCe
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI 144 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~~ 144 (697)
...+...++.|.+||-.- .+ -.-.+|..++.+.+++.||.++...|+|.-+.|+ .|+...+
T Consensus 51 ~~e~~~~~a~Gg~TIVD~--------T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~-- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVDA--------TN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP-- 111 (316)
T ss_pred HHHHHHHHHcCCCeEeeC--------Cc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--
Confidence 345666777899988641 11 0113689999999999999999999999988864 6765422
Q ss_pred eeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhc-CCCcceEe
Q 005416 145 NFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIM 223 (697)
Q Consensus 145 ~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~ 223 (697)
++.+...+.+.+.. .+ .|+=|..=|=-|-|.+.. -...=.+-|+..+++. -.++|+.+
T Consensus 112 ------------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~~----iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 ------------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSPA----ITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred ------------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCccc----CCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 34444455555551 11 122222222345555321 1222244455555543 45788866
Q ss_pred cCC
Q 005416 224 CKQ 226 (697)
Q Consensus 224 ~~~ 226 (697)
-++
T Consensus 171 Ht~ 173 (316)
T COG1735 171 HTP 173 (316)
T ss_pred ecc
Confidence 543
No 211
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=24.60 E-value=1.6e+02 Score=30.22 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccch---hHHHHHHHHHHcCCEEEEec
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNY---DLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~---dl~~fl~la~~~GL~Vilr~ 121 (697)
-+.-+.++|+||.+.|-.| ...|.+ .|..+-+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 5788999999999999983 333443 4556677789999988 77
No 212
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.36 E-value=1.2e+02 Score=31.87 Aligned_cols=55 Identities=22% Similarity=0.126 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-e--eec-cchhHHHHHHHHHHcCCEEEEec
Q 005416 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-Y--YFE-GNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 63 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~--df~-g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.+++.++.++++|+++|.+.- .+...+. . .+. -...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467888999999999997631 1111110 0 011 11467788899999999999985
No 213
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=23.93 E-value=1.1e+02 Score=30.92 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=39.8
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCcee-eccchhHHHHHHHHHHcC--CEEEEecCccccc
Q 005416 56 YPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYY-FEGNYDLVKFIKLAKQAG--LYVNLRIGPYVCA 127 (697)
Q Consensus 56 y~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d-f~g~~dl~~fl~la~~~G--L~Vilr~GPyi~a 127 (697)
+.|+..+|--..-+.+|+.||.++-.--.=..|....=-|- -.| +.=+-..+.. -++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG-----EvE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG-----EVERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc-----hhhhhhhhccccEEEEecCcceecc
Confidence 45789999889999999999998765333333333221111 112 1111122223 4589999998875
No 214
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.90 E-value=8.6e+02 Score=25.52 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCeEeccc
Q 005416 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV--NLRIGPYVCAEWNFGGFPVWLKYI 141 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~Wl~~~ 141 (697)
-.+.++.+++.|+++|++++- .|.--........+.++|-+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 357899999999999999553 22211111111236778888899998863 33224442
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 142 PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 142 ~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
+.+=+.|+..++...+.+.+.++.-+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777776666666655544
No 215
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.82 E-value=97 Score=32.50 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEccc-CCcC---CCCCCceee-ccchhHHHHHHHHHHcCCEEEEecCcccccccCC
Q 005416 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVF-WNGH---EPSPGKYYF-EGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNF 131 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~-Wn~h---Ep~~G~~df-~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~ 131 (697)
...+++.|++..+..|+.|+..+.+.+- ..+. +...-.|-- |+...=..+|+.+++.|+.|||-+|-
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM-------- 122 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--------
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC--------
Confidence 3468999999999999999999999432 1110 111111111 22222235889999999999998761
Q ss_pred CCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHH
Q 005416 132 GGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKM 211 (697)
Q Consensus 132 GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~ 211 (697)
.-++++++-++.+ + ...+.+|+..|-=-.|-.. .....-.-|..|++.
T Consensus 123 --------------------stl~EI~~Av~~~----~-----~~~~~~l~llHC~s~YP~~---~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 123 --------------------STLEEIERAVEVL----R-----EAGNEDLVLLHCVSSYPTP---PEDVNLRVIPTLKER 170 (241)
T ss_dssp ----------------------HHHHHHHHHHH----H-----HHCT--EEEEEE-SSSS-----GGG--TTHHHHHHHH
T ss_pred --------------------CCHHHHHHHHHHH----H-----hcCCCCEEEEecCCCCCCC---hHHcChHHHHHHHHh
Confidence 1245555555544 2 1234578888865555432 112333456666665
Q ss_pred H
Q 005416 212 A 212 (697)
Q Consensus 212 ~ 212 (697)
+
T Consensus 171 f 171 (241)
T PF03102_consen 171 F 171 (241)
T ss_dssp S
T ss_pred c
Confidence 5
No 216
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=23.81 E-value=1.1e+02 Score=33.49 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=28.4
Q ss_pred cCCcEEECCeEeEEEEEEeeCCCC-CcccHHHHH-HHHHHCCCCEEEE
Q 005416 36 DSKAIAINGKRRILISGSIHYPRS-SPEMWPDLI-QKAKDGGLDVIQT 81 (697)
Q Consensus 36 d~~~~~~~G~p~~~~~g~~hy~r~-~~~~W~~~l-~k~ka~G~N~V~~ 81 (697)
|.+.+.|||||++++ +.+.-+ ....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 678999999999987 343333 222333444 4568899996655
No 217
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=23.33 E-value=1.7e+02 Score=32.15 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE-EEecCcccccccCCC
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV-NLRIGPYVCAEWNFG 132 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V-ilr~GPyi~aEw~~G 132 (697)
+....|+..-.-.+.+||.+|.+|-+|+..+-.= |++.||...+..--.. |+.. .||--++|
T Consensus 130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~si~iLh---aCAhNPTG 192 (410)
T KOG1412|consen 130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEGSIIILH---ACAHNPTG 192 (410)
T ss_pred ecCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCCcEEeee---ccccCCCC
Confidence 4566799999999999999999999999765433 6778888887765442 3332 26654443
No 218
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.04 E-value=1.5e+02 Score=30.36 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=41.7
Q ss_pred eeCCCCCcccH--HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCc
Q 005416 54 IHYPRSSPEMW--PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (697)
Q Consensus 54 ~hy~r~~~~~W--~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 123 (697)
.|+........ +.-++.++++|++.|-+ .+-|.. -.|. .+.++++.|.++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 56655432222 23488999999999987 443432 2233 5889999999999999997653
No 219
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.03 E-value=3.5e+02 Score=30.15 Aligned_cols=82 Identities=26% Similarity=0.282 Sum_probs=55.1
Q ss_pred eeEEEcCCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc--chhHHHHH
Q 005416 31 GSVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFI 107 (697)
Q Consensus 31 ~~v~~d~~~~~~~G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl 107 (697)
..|.+ ..+.+.|....++.|.. -+ ..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.| ...+..+-
T Consensus 105 ~~~~~--~~~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~ 175 (360)
T PRK12595 105 TIVDV--KGEVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILK 175 (360)
T ss_pred CEEEE--CCEEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHH
Confidence 34555 33566554444465641 11 45666777888899999999975554 4433456664 46888899
Q ss_pred HHHHHcCCEEEEec
Q 005416 108 KLAKQAGLYVNLRI 121 (697)
Q Consensus 108 ~la~~~GL~Vilr~ 121 (697)
+.|++.||.++-.|
T Consensus 176 ~~~~~~Gl~~~t~v 189 (360)
T PRK12595 176 QVADEYGLAVISEI 189 (360)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999998876
No 220
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.01 E-value=1.4e+02 Score=27.36 Aligned_cols=44 Identities=25% Similarity=0.478 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 118 (697)
+|++...+.++.+++.|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478889999999999998877661 11 245689999999999976
No 221
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.96 E-value=4.4e+02 Score=29.34 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=54.0
Q ss_pred cEEEC-CeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc--chhHHHHHHHHHHcC
Q 005416 39 AIAIN-GKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAG 114 (697)
Q Consensus 39 ~~~~~-G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~G 114 (697)
.+.+. ++|++++.| +=-+ .++.-.+.-+.+|+.|...++-+.|= |+---|.|.| ..-|..+-+.+++.|
T Consensus 93 ~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~G 165 (352)
T PRK13396 93 PVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREATG 165 (352)
T ss_pred CeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 35554 466788888 3233 56777788889999999999976655 4433466765 355666677788999
Q ss_pred CEEEEec
Q 005416 115 LYVNLRI 121 (697)
Q Consensus 115 L~Vilr~ 121 (697)
|.++-.+
T Consensus 166 l~~~tev 172 (352)
T PRK13396 166 LGIITEV 172 (352)
T ss_pred CcEEEee
Confidence 9988775
No 222
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.84 E-value=1.9e+02 Score=31.50 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=43.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCcC---CC------------------------CCCceeeccchhHHHHHHHH
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------SPGKYYFEGNYDLVKFIKLA 110 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h---Ep------------------------~~G~~df~g~~dl~~fl~la 110 (697)
+.+..++.|+.|...++|++..++- |.+- .| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7888999999999999999997653 3221 11 112222 25999999999
Q ss_pred HHcCCEEEEe
Q 005416 111 KQAGLYVNLR 120 (697)
Q Consensus 111 ~~~GL~Vilr 120 (697)
++.|+.||-.
T Consensus 92 ~~rgI~vIPE 101 (326)
T cd06564 92 KDRGVNIIPE 101 (326)
T ss_pred HHcCCeEecc
Confidence 9999999865
No 223
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=22.83 E-value=1.3e+02 Score=34.06 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE-EEecC
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV-NLRIG 122 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V-ilr~G 122 (697)
...+.-+..|+.+|+.|+|.|-+++.=.---+.+-.|.- -..|-+.+++++.+.|..+ +|.+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 455667889999999999999996543322222222221 1346677888899999985 68876
No 224
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=22.81 E-value=6.1e+02 Score=27.82 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=67.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCeEe
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~Wl 138 (697)
...+..++--+.+...|+|.|.+ |-.-..+-...=+....+.++-++.+..||+|-|-.- ..|--+-||+
T Consensus 54 ~~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL---- 123 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGL---- 123 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-----
T ss_pred cchhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCc----
Confidence 34456778888899999999998 4443333222222334677788888999999987631 1111223442
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccCcccccCcccHHHHHHHHHHHHhcCCC
Q 005416 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTG 218 (697)
Q Consensus 139 ~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 218 (697)
-|.|| .-.+|.+|+++.++.|-++ .=.=||=++=.--|.+.|-. .|+-.-.+=.+-|++.++-+|=.
T Consensus 124 --------~TaDP-ld~~V~~WW~~k~~eIY~~--IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG~ 190 (328)
T PF07488_consen 124 --------PTADP-LDPEVRQWWKDKADEIYSA--IPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGGI 190 (328)
T ss_dssp --------S---T-TSHHHHHHHHHHHHHHHHH---TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-E
T ss_pred --------CcCCC-CCHHHHHHHHHHHHHHHHh--CCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCCE
Confidence 33443 3467788887776666531 11225544444444455543 35543344456677877776643
Q ss_pred c
Q 005416 219 V 219 (697)
Q Consensus 219 v 219 (697)
|
T Consensus 191 V 191 (328)
T PF07488_consen 191 V 191 (328)
T ss_dssp E
T ss_pred E
Confidence 4
No 225
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.80 E-value=4.6e+02 Score=29.88 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=58.3
Q ss_pred CcEEECCeEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEcccCCcCCCCCCceeeccchhHHHHHHHH
Q 005416 38 KAIAINGKRRILISGSIHYPRSS---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPSPGKYYFEGNYDLVKFIKLA 110 (697)
Q Consensus 38 ~~~~~~G~p~~~~~g~~hy~r~~---~~~W~~~l~k~ka~G~N~--V--~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la 110 (697)
+...+.+.-|+|+.+.-+-++.+ ++.-+.-.+.+++.|++. | ...-.-|+-.|.+..++++ ..-|.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 34567778899998877765542 344455567778888752 3 2222278877888877776 34677889999
Q ss_pred HHcCCE-EEEecC
Q 005416 111 KQAGLY-VNLRIG 122 (697)
Q Consensus 111 ~~~GL~-Vilr~G 122 (697)
.+.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 567787
No 226
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=22.50 E-value=1.8e+02 Score=24.84 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=34.2
Q ss_pred EEEEEecCCCCCccccCCCcceEEeCCcceEEEEEECCEEEEEEecccCCCeeEEeeeeecccCccE-EEEEEec
Q 005416 477 WYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINK-IALLSIA 550 (697)
Q Consensus 477 lYrT~i~~~~~~~~~~~~~~~~L~i~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~-L~ILvEn 550 (697)
=|+..++.+... ..+...-....+.|.|||..+.... .+..++|..|.|. |.|-|.+
T Consensus 15 ~Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~~---------~~~~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 15 EYTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSGG---------YSATIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCCC---------cceeeEccCCCceEEEEEEEc
Confidence 377777654322 3344444467899999997654320 1113346678888 8888843
No 227
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.31 E-value=81 Score=33.48 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=43.1
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
.-+.+|+.|-++|-+-|.|..-|++- +-....-|++|...|..++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~---neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEI---NEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHH---hHHHHHHHHHHHHHhhhcCCceeEee
Confidence 56789999999999999999999832 22233478899999999999999987
No 228
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.14 E-value=1.7e+02 Score=31.92 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcc----cCCcCC---C---CCC----ceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 59 SSPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---P---SPG----KYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 59 ~~~~~W~~~l~k~ka~G~N~V~~yv----~Wn~hE---p---~~G----~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
+|.+..++.|+.|...++|+...++ -|.+-- | +.| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4788999999999999999999987 475421 1 122 232 3499999999999999999663
No 229
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=21.91 E-value=79 Score=39.09 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=50.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE------------cccCCcCC------CCCCceeeccchhHHHHHHHHHH-cCCEEEEe
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQT------------YVFWNGHE------PSPGKYYFEGNYDLVKFIKLAKQ-AGLYVNLR 120 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~------------yv~Wn~hE------p~~G~~df~g~~dl~~fl~la~~-~GL~Vilr 120 (697)
|-+.|+.+|+++|+.|.|+|.. |-.-+.|| ..-++|.|+ |+..+++-|++ -++..|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6789999999999999999983 22223333 223568888 99999998864 57765533
Q ss_pred cCcccccccC-CCCCCeEecccCCe
Q 005416 121 IGPYVCAEWN-FGGFPVWLKYIPGI 144 (697)
Q Consensus 121 ~GPyi~aEw~-~GG~P~Wl~~~~~~ 144 (697)
. + |+ ...--.||+.+|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 1 11 12234688777753
No 230
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.80 E-value=1.1e+02 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc----chhHHHHHHHHHHcCCEE
Q 005416 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG----NYDLVKFIKLAKQAGLYV 117 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g----~~dl~~fl~la~~~GL~V 117 (697)
++.|+.||++|+|.|++.| ..-.+-..+.-| ..++.+.++.|++.|+..
T Consensus 107 ~e~l~~Lk~~Gv~risiGv----qS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV----QSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHHHHHHHHcCCCEEEecc----CcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4889999999999999943 333333333222 237788899999999963
No 231
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.75 E-value=1.6e+02 Score=31.11 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=47.9
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHH-HcCCEEEEecC
Q 005416 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK-QAGLYVNLRIG 122 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~-~~GL~Vilr~G 122 (697)
.+...+.-.+..+.+-++|++.|++..+-...+...|..-|.....+.++.++.+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4567888889999999999999999888776656677777775555556665553 44455567775
No 232
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=21.64 E-value=1.3e+02 Score=33.95 Aligned_cols=68 Identities=22% Similarity=0.429 Sum_probs=52.1
Q ss_pred EECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCC--CCEEEEcccCCcCCCCCCceeeccc-hhHHHHHHHHHHcCCE
Q 005416 41 AINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGG--LDVIQTYVFWNGHEPSPGKYYFEGN-YDLVKFIKLAKQAGLY 116 (697)
Q Consensus 41 ~~~G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G--~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~la~~~GL~ 116 (697)
++||-+ +-.++.+.|+. ..+.-++.|++-+..| -..|-| +|+|..+|. .+|.+++++|+++|.+
T Consensus 136 iidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~ 203 (388)
T COG0156 136 IIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGAL 203 (388)
T ss_pred HHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcE
Confidence 556666 55566776665 5577777777766554 456666 999999997 8999999999999988
Q ss_pred EEEe
Q 005416 117 VNLR 120 (697)
Q Consensus 117 Vilr 120 (697)
+++.
T Consensus 204 L~VD 207 (388)
T COG0156 204 LYVD 207 (388)
T ss_pred EEEE
Confidence 8876
No 233
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.62 E-value=1.2e+02 Score=33.42 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=39.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc----hhHHHHHHHHHHcCCE
Q 005416 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN----YDLVKFIKLAKQAGLY 116 (697)
Q Consensus 50 ~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~----~dl~~fl~la~~~GL~ 116 (697)
++-+.++..+. ++.|+.||++|+|.|++.| -.-.+...+.-|+ .++.+.++.+++.|+.
T Consensus 89 itie~np~~lt----~e~l~~l~~~Gv~risiGv----qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 89 ITTEANPELIT----AEWCKGLKGAGINRLSLGV----QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEec----ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 34445554444 4679999999999999843 3333333333222 3788899999999985
No 234
>PRK06703 flavodoxin; Provisional
Probab=21.58 E-value=4.2e+02 Score=24.94 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=59.1
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec---cchhHHHHHHHHHHcCCEEE
Q 005416 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN 118 (697)
Q Consensus 42 ~~G~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~GL~Vi 118 (697)
+..-..++++...+-.-.+|..+++-+..+++.-++.....+|-. ++++ .....+.+-+..++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 444455666554443334566677778888776666555555522 2221 12355667777889999887
Q ss_pred EecCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 005416 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (697)
Q Consensus 119 lr~GPyi~aEw~~GG~P~Wl~~~~~~~~Rt~d~~y~~~~~~~~~~l~~~i~ 169 (697)
.++ .. +..-.++..-+++++.|.++|++.++
T Consensus 118 ~~~--~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEG--LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccC--eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 764 10 00111224677888999999887766
No 235
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.56 E-value=1.5e+02 Score=35.34 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=44.6
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEE
Q 005416 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 54 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 119 (697)
+=|.|.|.+.-+..++++++.|+..|+++...|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44667788888899999999999999998766653 3788999999999998643
No 236
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.31 E-value=94 Score=32.56 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCcCCCC---CCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 62 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
+.+++.++.++++|+.+|.+ |..+.+. +..+.- -...|.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998866 3333221 111110 124677888888899999999874
No 237
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=21.17 E-value=2e+02 Score=34.87 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCC---cCCCCCCc---eeec-c-chhHHHHHHHHHHcCCEEEE
Q 005416 58 RSSPEMWPDLIQKAKDGGLDVIQTYVFWN---GHEPSPGK---YYFE-G-NYDLVKFIKLAKQAGLYVNL 119 (697)
Q Consensus 58 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~---~df~-g-~~dl~~fl~la~~~GL~Vil 119 (697)
.+.++.-++.|+-+|+.|+++|+.--.-. ...+-|++ .-|+ | ..+....+.+.+++|+...+
T Consensus 68 ~Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 68 SVRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred ccCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 45677889999999999999999854432 22333442 2354 2 34567888999999998654
No 238
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.93 E-value=2.2e+02 Score=28.42 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEe
Q 005416 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (697)
Q Consensus 67 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 120 (697)
.+++++++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999998754321 136789999999999999875
No 239
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.82 E-value=2.8e+02 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=47.6
Q ss_pred eEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEecC
Q 005416 45 KRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (697)
Q Consensus 45 ~p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 122 (697)
++++++.|..- .....+++..+.+++.|+.++.. +..+|+| + ..++++.++++++.+..+|+-.|
T Consensus 32 ~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~---~~~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---T---TENVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---C---HHHHHHHHHHHHHcCCCEEEEeC
Confidence 78888877411 12356778888889999875333 5666666 2 23788999999999999999987
No 240
>PLN02389 biotin synthase
Probab=20.59 E-value=1.3e+02 Score=33.64 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCcCCCCCCceeeccchhHHHHHHHHHHcCCEE
Q 005416 65 PDLIQKAKDGGLDVIQTYVF--WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (697)
Q Consensus 65 ~~~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V 117 (697)
++.++++|++|++.+..-+= -..+...-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 241
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.46 E-value=73 Score=34.60 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=41.1
Q ss_pred EeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEE-Eec
Q 005416 46 RRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRI 121 (697)
Q Consensus 46 p~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~ 121 (697)
..++++-+..--+.| +.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 345555555555555 78999999999999999985 676433 67799999999999876 664
No 242
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=20.38 E-value=8.8e+02 Score=24.35 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=39.1
Q ss_pred CC-CcccHHHHHHHHHHCCCCE------EEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCE---EEEecCccccc
Q 005416 58 RS-SPEMWPDLIQKAKDGGLDV------IQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY---VNLRIGPYVCA 127 (697)
Q Consensus 58 r~-~~~~W~~~l~k~ka~G~N~------V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~---Vilr~GPyi~a 127 (697)
|. |.+.=...|..||+.|+.. +-+ |.-+...+. ...+..|++--+. +.- +++.+.--+-.
T Consensus 70 wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~I----N~dd~~~~~-----~~fVk~fie~~~~-~~P~~~vllD~~g~v~~ 139 (184)
T TIGR01626 70 RTSAKEXNASLIDAIKAAKFPPVKYQTTTII----NADDAIVGT-----GMFVKSSAKKGKK-ENPWSQVVLDDKGAVKN 139 (184)
T ss_pred CCChhhccchHHHHHHHcCCCcccccceEEE----ECccchhhH-----HHHHHHHHHHhcc-cCCcceEEECCcchHHH
Confidence 54 4444556788899999887 444 433332211 1123344443332 332 44544333444
Q ss_pred ccCCCCCCe--EecccCC
Q 005416 128 EWNFGGFPV--WLKYIPG 143 (697)
Q Consensus 128 Ew~~GG~P~--Wl~~~~~ 143 (697)
.|.-.|+|. .+.+..|
T Consensus 140 ~~gv~~~P~T~fVIDk~G 157 (184)
T TIGR01626 140 AWQLNSEDSAIIVLDKTG 157 (184)
T ss_pred hcCCCCCCceEEEECCCC
Confidence 677778754 4555444
No 243
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.31 E-value=1.3e+02 Score=33.05 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=47.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEEEEec
Q 005416 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (697)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 121 (697)
-|.|.-.=..-.+++|++|-++|-+-+.|+--|+.+- +=.....++++.+.|+.+||..+|.|
T Consensus 100 gRl~~ll~~wS~~rike~GadavK~Llyy~pD~~~~i--n~~k~a~vervg~eC~a~dipf~lE~ 162 (324)
T PRK12399 100 GRLPDCLDDWSAKRIKEEGADAVKFLLYYDVDEPDEI--NEQKKAYIERIGSECVAEDIPFFLEI 162 (324)
T ss_pred CCcccccchhhHHHHHHhCCCeEEEEEEECCCCCHHH--HHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4555544444678899999999999999998877631 11223478899999999999999986
No 244
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=20.30 E-value=1e+02 Score=31.67 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.2
Q ss_pred CCCC-CCeEEEc----CCCceEEEEECCeecccccc
Q 005416 634 PAGN-APLALDM----GSMGKGQVWVNGQSIGRHWP 664 (697)
Q Consensus 634 p~~~-dptfLd~----~gwgKG~vwVNG~nLGRYW~ 664 (697)
|+|+ .+|||.| .-=.+|.|||||++|.|.=.
T Consensus 36 pSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 36 PSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc
Confidence 4444 2466653 22478999999999998643
No 245
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=20.18 E-value=1.9e+02 Score=33.00 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=58.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCcC--CC--CCCceee-----cc-----chhHHHHHHHHH-HcCCEEEEecCc
Q 005416 60 SPEMWPDLIQKAKDGGLDVIQTY-VFWNGH--EP--SPGKYYF-----EG-----NYDLVKFIKLAK-QAGLYVNLRIGP 123 (697)
Q Consensus 60 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~h--Ep--~~G~~df-----~g-----~~dl~~fl~la~-~~GL~Vilr~GP 123 (697)
+-+.|+++|+.++++|.|+|..- +---.. .| ..++..| .. ..++.+++..++ ++||.++...
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 55689999999999999999851 111000 00 0111111 11 148999999985 7999987553
Q ss_pred ccccccCCCC-CCeEecccCCeeeecCChhHHHHH---HHHHHHHHHHHH
Q 005416 124 YVCAEWNFGG-FPVWLKYIPGINFRTENGPFKAEM---HKFTKKIVDMMK 169 (697)
Q Consensus 124 yi~aEw~~GG-~P~Wl~~~~~~~~Rt~d~~y~~~~---~~~~~~l~~~i~ 169 (697)
+ |+.-. ==.||..+|+.-.-..+.++++.+ ++-+-++...|.
T Consensus 98 -V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 98 -V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred -e---eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 1 22211 135888888753333344454432 333444444444
No 246
>PRK10626 hypothetical protein; Provisional
Probab=20.08 E-value=90 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHhcCC
Q 005416 9 MCNVLLILLLGCSGLF 24 (697)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (697)
||+++|.++|++++..
T Consensus 2 mrk~~l~~~L~l~s~~ 17 (239)
T PRK10626 2 MRKMLLAALLSLTAMQ 17 (239)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777766444433
No 247
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.07 E-value=84 Score=34.60 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCEEE-----EcccCCcCCCCCCceeeccchhHHHHHHHHHHcCCEE
Q 005416 64 WPDLIQKAKDGGLDVIQ-----TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (697)
Q Consensus 64 W~~~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V 117 (697)
-++.|+++|++|++.+. ++..--++.-.+++...+ +..+.++.|++.|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 46679999999997654 221111222334433333 4558999999999976
No 248
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=3.7e+02 Score=30.05 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=50.4
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCeEecccCC------eeeecC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 005416 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG------INFRTE-NGPFKAEMHKFTKKIVDMMKAERLFESQGGPII 182 (697)
Q Consensus 110 a~~~GL~Vilr~GPyi~aEw~~GG~P~Wl~~~~~------~~~Rt~-d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 182 (697)
+-..|+.|+.-| | ..|+|+...-. -+||.+ .++|-++..+|+.+ ++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------W---spPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~----m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------W---SPPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLE----MK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------C---CCchhhhhccCcCCccccccchhHhHHHHHHHHHHHHH----HH------hCCCcee
Confidence 667899999887 5 37999975321 134432 45555555555443 33 4566898
Q ss_pred eecccccccCcccccCc---ccHHHHHHHHHHHHh
Q 005416 183 LSQIENEYGPMEYEIGA---PGRSYTRWAAKMAVG 214 (697)
Q Consensus 183 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~ 214 (697)
+..|.||..... .|+. ...+.++.+++-++.
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~s 204 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLAS 204 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhh
Confidence 999999986532 1222 234556666666644
No 249
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.01 E-value=2e+02 Score=30.44 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=55.2
Q ss_pred eEEEcCCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec--cchhHHHHHH
Q 005416 32 SVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE--GNYDLVKFIK 108 (697)
Q Consensus 32 ~v~~d~~~~~~~G~p~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl~ 108 (697)
.|.+. .+.+.+..+.+++| +-.+ ..+.-.+..+.+|+.|....+.|++=+...| +.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 35553 35565444666777 3233 4555667788889999998888877644333 3454 4567888888
Q ss_pred HHHHcCCEEEEec
Q 005416 109 LAKQAGLYVNLRI 121 (697)
Q Consensus 109 la~~~GL~Vilr~ 121 (697)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998876
Done!