Query 005417
Match_columns 697
No_of_seqs 592 out of 3062
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 23:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1E-140 3E-145 1149.7 28.5 496 164-689 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.7E-41 3.7E-46 371.7 10.7 199 463-691 35-262 (506)
3 PLN02336 phosphoethanolamine N 99.7 1.1E-17 2.4E-22 188.3 14.7 101 284-388 38-145 (475)
4 COG2226 UbiE Methylase involve 99.7 1.4E-17 3.1E-22 171.4 13.9 106 283-390 51-161 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 5.7E-17 1.2E-21 167.2 11.3 105 283-388 47-156 (233)
6 PLN02233 ubiquinone biosynthes 99.7 7.5E-16 1.6E-20 161.2 15.0 106 283-389 73-186 (261)
7 PF08241 Methyltransf_11: Meth 99.7 4.1E-16 8.8E-21 134.8 9.1 93 288-383 1-95 (95)
8 PRK10258 biotin biosynthesis p 99.7 8.8E-16 1.9E-20 158.8 13.2 134 249-390 12-145 (251)
9 PF13489 Methyltransf_23: Meth 99.5 1.1E-13 2.3E-18 131.5 13.1 98 283-389 22-119 (161)
10 KOG1540 Ubiquinone biosynthesi 99.5 8.1E-14 1.8E-18 142.6 12.4 131 257-388 66-217 (296)
11 PRK14103 trans-aconitate 2-met 99.5 9.2E-14 2E-18 144.4 12.2 100 283-387 29-128 (255)
12 COG4106 Tam Trans-aconitate me 99.5 9.6E-14 2.1E-18 139.1 11.6 204 283-526 30-234 (257)
13 COG2227 UbiG 2-polyprenyl-3-me 99.5 4E-14 8.6E-19 144.6 8.8 106 283-392 59-168 (243)
14 TIGR02072 BioC biotin biosynth 99.5 2E-13 4.4E-18 138.0 13.3 106 283-390 34-140 (240)
15 PLN02244 tocopherol O-methyltr 99.5 2.8E-13 6E-18 147.1 13.6 102 283-387 118-225 (340)
16 PRK05785 hypothetical protein; 99.5 1.8E-13 4E-18 140.4 11.5 89 284-378 52-140 (226)
17 TIGR02752 MenG_heptapren 2-hep 99.5 5.5E-13 1.2E-17 135.9 14.3 104 284-388 46-154 (231)
18 PLN02396 hexaprenyldihydroxybe 99.5 1.7E-13 3.7E-18 147.7 10.7 104 283-390 131-240 (322)
19 PRK11088 rrmA 23S rRNA methylt 99.5 7.1E-13 1.5E-17 139.3 14.2 105 283-395 85-191 (272)
20 PTZ00098 phosphoethanolamine N 99.4 5.7E-13 1.2E-17 139.7 12.8 103 284-388 53-159 (263)
21 PRK01683 trans-aconitate 2-met 99.4 7.2E-13 1.6E-17 137.5 12.8 102 283-387 31-132 (258)
22 PF05219 DREV: DREV methyltran 99.4 1.8E-13 3.9E-18 141.4 6.8 199 239-460 53-255 (265)
23 PRK11036 putative S-adenosyl-L 99.4 9E-13 1.9E-17 137.1 12.0 103 283-389 44-153 (255)
24 PF13847 Methyltransf_31: Meth 99.4 8.9E-13 1.9E-17 126.2 11.0 103 283-387 3-112 (152)
25 TIGR00740 methyltransferase, p 99.4 2.7E-12 5.8E-17 132.1 14.4 103 283-388 53-164 (239)
26 PRK08317 hypothetical protein; 99.4 2.7E-12 5.8E-17 129.5 13.7 103 284-387 20-126 (241)
27 PF12847 Methyltransf_18: Meth 99.4 8.1E-13 1.8E-17 118.9 8.5 101 284-386 2-112 (112)
28 PLN02490 MPBQ/MSBQ methyltrans 99.4 4.3E-12 9.3E-17 137.6 13.4 102 284-387 114-217 (340)
29 PRK11207 tellurite resistance 99.4 5E-12 1.1E-16 127.0 12.7 96 284-384 31-133 (197)
30 PF13649 Methyltransf_25: Meth 99.4 9.5E-13 2.1E-17 117.5 6.6 93 287-379 1-101 (101)
31 TIGR00477 tehB tellurite resis 99.4 8.2E-12 1.8E-16 125.2 13.7 97 284-385 31-133 (195)
32 PRK15068 tRNA mo(5)U34 methylt 99.4 5.2E-12 1.1E-16 136.3 13.0 99 284-386 123-227 (322)
33 PLN02336 phosphoethanolamine N 99.4 5.9E-12 1.3E-16 142.1 14.0 103 283-388 266-372 (475)
34 PRK15451 tRNA cmo(5)U34 methyl 99.3 9.9E-12 2.1E-16 129.0 13.8 103 283-388 56-167 (247)
35 PRK11873 arsM arsenite S-adeno 99.3 7.4E-12 1.6E-16 131.2 11.9 105 283-388 77-186 (272)
36 TIGR00452 methyltransferase, p 99.3 1.6E-11 3.5E-16 132.0 12.6 101 283-387 121-227 (314)
37 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.4E-17 116.2 2.5 92 288-381 1-99 (99)
38 TIGR03587 Pse_Me-ase pseudamin 99.3 4E-11 8.7E-16 121.4 12.7 100 283-386 43-143 (204)
39 smart00138 MeTrc Methyltransfe 99.3 2.9E-11 6.3E-16 127.0 11.9 103 283-385 99-242 (264)
40 KOG4300 Predicted methyltransf 99.2 2.1E-11 4.5E-16 121.7 9.5 102 285-389 78-186 (252)
41 PRK00107 gidB 16S rRNA methylt 99.2 6.9E-11 1.5E-15 118.3 13.4 117 284-420 46-167 (187)
42 PRK12335 tellurite resistance 99.2 5.9E-11 1.3E-15 125.9 13.4 96 285-385 122-223 (287)
43 smart00828 PKS_MT Methyltransf 99.2 3.2E-11 6.9E-16 122.4 10.9 99 286-387 2-106 (224)
44 PRK06922 hypothetical protein; 99.2 2.3E-11 5.1E-16 139.8 10.7 103 284-387 419-539 (677)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 7.2E-11 1.6E-15 118.5 12.9 104 283-387 39-145 (223)
46 PF02353 CMAS: Mycolic acid cy 99.2 4.4E-11 9.5E-16 126.4 11.4 114 262-388 49-169 (273)
47 PRK11705 cyclopropane fatty ac 99.2 6.7E-11 1.4E-15 130.6 12.5 100 284-388 168-270 (383)
48 PRK00216 ubiE ubiquinone/menaq 99.2 1.5E-10 3.2E-15 117.5 13.9 104 284-388 52-161 (239)
49 PF07021 MetW: Methionine bios 99.2 5E-11 1.1E-15 118.7 9.8 100 283-388 13-112 (193)
50 PRK00121 trmB tRNA (guanine-N( 99.2 4.8E-11 1E-15 120.4 9.2 103 284-388 41-159 (202)
51 KOG1270 Methyltransferases [Co 99.2 2.6E-11 5.7E-16 125.0 6.9 100 284-390 90-200 (282)
52 PRK06202 hypothetical protein; 99.2 3.2E-10 7E-15 116.2 13.2 103 283-388 60-169 (232)
53 PF05401 NodS: Nodulation prot 99.1 3.5E-10 7.5E-15 113.1 12.1 100 283-386 43-147 (201)
54 PF03848 TehB: Tellurite resis 99.1 3.7E-10 7.9E-15 113.4 12.0 99 284-386 31-134 (192)
55 TIGR03840 TMPT_Se_Te thiopurin 99.1 5.1E-10 1.1E-14 114.2 13.2 100 284-386 35-153 (213)
56 PRK11188 rrmJ 23S rRNA methylt 99.1 3.4E-10 7.4E-15 115.0 11.6 98 284-388 52-168 (209)
57 TIGR02469 CbiT precorrin-6Y C5 99.1 1.1E-09 2.3E-14 99.8 13.5 98 284-386 20-123 (124)
58 COG2230 Cfa Cyclopropane fatty 99.1 3.8E-10 8.3E-15 118.9 12.0 128 249-389 45-180 (283)
59 KOG1541 Predicted protein carb 99.1 5E-10 1.1E-14 112.9 11.4 118 262-389 35-164 (270)
60 TIGR00138 gidB 16S rRNA methyl 99.1 9.7E-10 2.1E-14 109.4 12.9 96 284-386 43-143 (181)
61 PF05175 MTS: Methyltransferas 99.1 2.1E-09 4.6E-14 105.5 14.3 100 284-386 32-141 (170)
62 PRK01544 bifunctional N5-gluta 99.1 7.5E-09 1.6E-13 118.3 20.7 100 284-385 139-269 (506)
63 TIGR02021 BchM-ChlM magnesium 99.1 1.2E-09 2.6E-14 111.0 12.7 96 283-384 55-157 (219)
64 KOG3010 Methyltransferase [Gen 99.1 2.5E-10 5.4E-15 116.6 7.4 125 251-386 6-138 (261)
65 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.8E-10 1E-14 112.3 9.4 102 284-387 17-134 (194)
66 TIGR00537 hemK_rel_arch HemK-r 99.0 3.4E-09 7.5E-14 104.4 14.8 99 285-388 21-143 (179)
67 PRK13944 protein-L-isoaspartat 99.0 1.8E-09 4E-14 109.1 12.7 95 284-385 73-173 (205)
68 PRK05134 bifunctional 3-demeth 99.0 1.9E-09 4E-14 110.2 12.1 102 283-388 48-154 (233)
69 TIGR02081 metW methionine bios 99.0 1.5E-09 3.3E-14 108.3 11.0 96 284-387 14-111 (194)
70 PRK09489 rsmC 16S ribosomal RN 99.0 2.9E-09 6.3E-14 116.0 13.8 98 285-386 198-304 (342)
71 TIGR00406 prmA ribosomal prote 99.0 2.5E-09 5.4E-14 113.8 12.9 99 284-388 160-262 (288)
72 COG4976 Predicted methyltransf 99.0 9.8E-11 2.1E-15 118.5 1.7 102 283-388 125-228 (287)
73 PRK13942 protein-L-isoaspartat 99.0 2.6E-09 5.7E-14 108.6 12.0 109 262-385 63-176 (212)
74 TIGR01983 UbiG ubiquinone bios 99.0 2.4E-09 5.2E-14 108.4 11.5 102 283-388 45-152 (224)
75 TIGR00080 pimt protein-L-isoas 99.0 2.8E-09 6E-14 108.4 12.0 95 284-385 78-177 (215)
76 PF08003 Methyltransf_9: Prote 99.0 2.4E-09 5.2E-14 113.4 11.8 102 283-388 115-222 (315)
77 PLN03075 nicotianamine synthas 99.0 5E-09 1.1E-13 111.5 12.5 102 283-385 123-233 (296)
78 PRK13255 thiopurine S-methyltr 99.0 6.9E-09 1.5E-13 106.3 12.9 98 284-384 38-154 (218)
79 PRK15001 SAM-dependent 23S rib 98.9 7.3E-09 1.6E-13 114.1 13.9 98 285-385 230-340 (378)
80 PRK08287 cobalt-precorrin-6Y C 98.9 1.2E-08 2.5E-13 101.4 13.6 97 284-387 32-133 (187)
81 TIGR02716 C20_methyl_CrtF C-20 98.9 8.1E-09 1.7E-13 110.4 12.7 102 283-388 149-257 (306)
82 PRK00517 prmA ribosomal protei 98.9 4.6E-09 1E-13 109.3 10.6 94 283-388 119-216 (250)
83 PLN02232 ubiquinone biosynthes 98.9 3E-09 6.4E-14 103.6 8.4 76 312-388 1-84 (160)
84 PRK14121 tRNA (guanine-N(7)-)- 98.9 6.5E-09 1.4E-13 114.4 12.0 101 284-386 123-236 (390)
85 PF13659 Methyltransf_26: Meth 98.9 4.2E-09 9.1E-14 95.6 8.0 100 285-386 2-116 (117)
86 KOG2361 Predicted methyltransf 98.9 6.6E-09 1.4E-13 106.3 10.2 136 255-396 49-194 (264)
87 TIGR03438 probable methyltrans 98.9 1.4E-08 3E-13 108.8 13.0 105 284-389 64-181 (301)
88 cd02440 AdoMet_MTases S-adenos 98.9 1.1E-08 2.4E-13 87.4 10.0 96 286-384 1-103 (107)
89 PLN02585 magnesium protoporphy 98.9 2.3E-08 5E-13 107.8 14.8 92 284-382 145-247 (315)
90 PRK04266 fibrillarin; Provisio 98.9 1E-08 2.2E-13 105.6 11.3 98 284-386 73-177 (226)
91 PRK07580 Mg-protoporphyrin IX 98.9 1.7E-08 3.7E-13 102.5 12.4 94 283-382 63-163 (230)
92 PRK00377 cbiT cobalt-precorrin 98.9 2E-08 4.3E-13 100.9 12.7 100 283-386 40-146 (198)
93 PRK14967 putative methyltransf 98.9 2E-08 4.4E-13 102.6 12.8 101 284-387 37-161 (223)
94 PTZ00146 fibrillarin; Provisio 98.9 3E-08 6.5E-13 105.3 14.1 125 257-386 107-238 (293)
95 COG2813 RsmC 16S RNA G1207 met 98.9 2.7E-08 5.8E-13 105.5 13.4 127 249-386 130-267 (300)
96 COG2264 PrmA Ribosomal protein 98.8 2E-08 4.2E-13 106.9 11.9 100 283-388 162-266 (300)
97 TIGR01177 conserved hypothetic 98.8 4E-08 8.7E-13 106.4 14.3 101 284-387 183-296 (329)
98 KOG3987 Uncharacterized conser 98.8 5E-10 1.1E-14 111.8 -0.6 201 244-464 78-279 (288)
99 TIGR00438 rrmJ cell division p 98.8 2.9E-08 6.2E-13 98.7 11.4 99 283-387 32-148 (188)
100 PRK14968 putative methyltransf 98.8 5.8E-08 1.3E-12 95.1 13.3 100 284-387 24-150 (188)
101 TIGR03534 RF_mod_PrmC protein- 98.8 5.9E-08 1.3E-12 99.7 13.3 101 284-386 88-218 (251)
102 PF06325 PrmA: Ribosomal prote 98.8 2.7E-08 5.8E-13 106.3 10.0 98 283-388 161-262 (295)
103 PRK00312 pcm protein-L-isoaspa 98.8 7.5E-08 1.6E-12 97.4 12.8 93 284-386 79-176 (212)
104 KOG2940 Predicted methyltransf 98.8 1E-08 2.2E-13 104.0 5.9 110 284-396 73-185 (325)
105 PRK07402 precorrin-6B methylas 98.7 9.3E-08 2E-12 95.7 12.7 98 284-387 41-144 (196)
106 PRK10901 16S rRNA methyltransf 98.7 8.4E-08 1.8E-12 107.5 12.4 106 283-389 244-376 (427)
107 TIGR03533 L3_gln_methyl protei 98.7 1.7E-07 3.7E-12 99.7 13.8 101 284-386 122-252 (284)
108 TIGR00563 rsmB ribosomal RNA s 98.7 1.5E-07 3.3E-12 105.4 12.9 106 284-390 239-373 (426)
109 KOG1271 Methyltransferases [Ge 98.7 9.3E-08 2E-12 94.3 9.5 105 283-388 67-184 (227)
110 PRK00811 spermidine synthase; 98.7 2.6E-07 5.7E-12 98.2 13.7 103 283-387 76-193 (283)
111 PRK13943 protein-L-isoaspartat 98.7 1.9E-07 4.1E-12 101.0 12.6 96 284-386 81-181 (322)
112 PRK13256 thiopurine S-methyltr 98.7 2.8E-07 6.1E-12 95.0 13.2 100 284-386 44-164 (226)
113 PRK14901 16S rRNA methyltransf 98.6 1.7E-07 3.8E-12 105.2 12.5 107 283-389 252-388 (434)
114 PF03291 Pox_MCEL: mRNA cappin 98.6 8E-08 1.7E-12 104.3 9.0 104 283-388 62-189 (331)
115 PRK09328 N5-glutamine S-adenos 98.6 2.3E-07 5E-12 97.0 11.8 100 284-385 109-238 (275)
116 PF06080 DUF938: Protein of un 98.6 2.6E-07 5.6E-12 93.4 11.6 142 286-429 28-204 (204)
117 smart00650 rADc Ribosomal RNA 98.6 1.8E-07 3.9E-12 91.5 10.0 95 284-385 14-113 (169)
118 PRK14904 16S rRNA methyltransf 98.6 3.1E-07 6.7E-12 103.5 12.3 107 283-390 250-382 (445)
119 PRK14966 unknown domain/N5-glu 98.6 6E-07 1.3E-11 99.8 14.2 101 285-386 253-382 (423)
120 PF01135 PCMT: Protein-L-isoas 98.6 1.2E-07 2.6E-12 96.6 7.6 111 261-386 58-173 (209)
121 TIGR00536 hemK_fam HemK family 98.6 3.8E-07 8.2E-12 96.9 11.3 100 285-386 116-245 (284)
122 COG4123 Predicted O-methyltran 98.6 3.2E-07 7E-12 95.4 10.4 103 284-387 45-172 (248)
123 PRK14903 16S rRNA methyltransf 98.6 4E-07 8.6E-12 102.3 12.0 108 283-390 237-371 (431)
124 PF05148 Methyltransf_8: Hypot 98.5 3.9E-07 8.4E-12 92.2 10.5 113 284-422 73-185 (219)
125 PRK11805 N5-glutamine S-adenos 98.5 3.8E-07 8.2E-12 98.1 11.1 100 285-386 135-264 (307)
126 PRK04457 spermidine synthase; 98.5 5.3E-07 1.1E-11 94.9 11.5 103 283-386 66-178 (262)
127 PHA03411 putative methyltransf 98.5 5E-07 1.1E-11 95.3 11.1 99 284-384 65-182 (279)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.1E-07 1.5E-11 93.9 12.2 108 283-390 71-204 (264)
129 PRK01581 speE spermidine synth 98.5 7.2E-07 1.6E-11 97.5 12.0 103 283-387 150-270 (374)
130 COG2518 Pcm Protein-L-isoaspar 98.5 1.1E-06 2.5E-11 89.0 11.4 108 261-386 58-170 (209)
131 PF08241 Methyltransf_11: Meth 98.5 4.7E-08 1E-12 84.2 1.0 91 550-650 1-95 (95)
132 PF00891 Methyltransf_2: O-met 98.4 9E-07 2E-11 91.2 10.5 100 283-388 100-202 (241)
133 PRK14902 16S rRNA methyltransf 98.4 1.5E-06 3.2E-11 98.0 12.9 105 284-389 251-383 (444)
134 TIGR00417 speE spermidine synt 98.4 1.3E-06 2.8E-11 92.1 11.6 102 283-386 72-187 (270)
135 KOG1975 mRNA cap methyltransfe 98.4 7.3E-07 1.6E-11 94.7 8.5 103 283-388 117-240 (389)
136 KOG3045 Predicted RNA methylas 98.4 1.5E-06 3.2E-11 90.0 10.0 112 283-422 180-291 (325)
137 PLN02366 spermidine synthase 98.4 4E-06 8.6E-11 90.4 13.8 102 283-386 91-207 (308)
138 COG2242 CobL Precorrin-6B meth 98.4 4.4E-06 9.6E-11 83.3 12.8 99 283-388 34-138 (187)
139 PRK03612 spermidine synthase; 98.4 2.9E-06 6.3E-11 97.6 13.2 104 283-388 297-418 (521)
140 PHA03412 putative methyltransf 98.4 2.1E-06 4.6E-11 88.9 10.7 96 284-380 50-158 (241)
141 PF05891 Methyltransf_PK: AdoM 98.4 1E-06 2.2E-11 89.8 8.2 137 283-421 55-200 (218)
142 PF02390 Methyltransf_4: Putat 98.3 1.6E-06 3.4E-11 87.5 8.9 100 285-386 19-134 (195)
143 TIGR03704 PrmC_rel_meth putati 98.3 2.7E-06 5.8E-11 89.0 11.0 101 285-386 88-217 (251)
144 PLN02781 Probable caffeoyl-CoA 98.3 3.8E-06 8.2E-11 87.0 11.8 99 284-386 69-179 (234)
145 COG0220 Predicted S-adenosylme 98.3 1.5E-06 3.2E-11 89.8 8.5 101 285-387 50-166 (227)
146 PF05724 TPMT: Thiopurine S-me 98.3 3.9E-06 8.4E-11 86.2 10.3 98 284-384 38-154 (218)
147 PF01739 CheR: CheR methyltran 98.3 4.9E-06 1.1E-10 84.2 10.8 103 283-385 31-175 (196)
148 COG0500 SmtA SAM-dependent met 98.3 8.9E-06 1.9E-10 71.6 11.0 100 287-389 52-159 (257)
149 COG2519 GCD14 tRNA(1-methylade 98.3 1.2E-05 2.6E-10 83.6 13.2 109 266-389 85-199 (256)
150 PRK13168 rumA 23S rRNA m(5)U19 98.2 1E-05 2.2E-10 91.3 12.6 95 284-386 298-401 (443)
151 TIGR00478 tly hemolysin TlyA f 98.2 1E-05 2.2E-10 83.7 10.5 91 283-385 75-171 (228)
152 COG2890 HemK Methylase of poly 98.1 9.5E-06 2.1E-10 86.3 10.2 99 286-386 113-239 (280)
153 PRK11783 rlmL 23S rRNA m(2)G24 98.1 5.4E-06 1.2E-10 98.6 9.2 101 284-386 539-657 (702)
154 PRK10611 chemotaxis methyltran 98.1 2E-05 4.3E-10 84.2 11.8 102 284-385 116-262 (287)
155 KOG2899 Predicted methyltransf 98.1 1E-05 2.2E-10 83.3 9.1 101 283-384 58-208 (288)
156 PRK15128 23S rRNA m(5)C1962 me 98.1 1.3E-05 2.7E-10 89.4 9.6 101 284-386 221-340 (396)
157 PRK00274 ksgA 16S ribosomal RN 98.1 1.2E-05 2.5E-10 85.1 8.8 70 284-356 43-114 (272)
158 PRK03522 rumB 23S rRNA methylu 98.1 3E-05 6.4E-10 83.7 12.1 98 284-388 174-277 (315)
159 COG3963 Phospholipid N-methylt 98.1 3E-05 6.6E-10 75.9 10.6 106 283-388 48-159 (194)
160 PF13489 Methyltransf_23: Meth 98.0 2.3E-06 5.1E-11 81.1 1.7 94 546-654 23-117 (161)
161 PRK14896 ksgA 16S ribosomal RN 98.0 2.8E-05 6.1E-10 81.6 9.6 85 262-360 16-103 (258)
162 KOG1331 Predicted methyltransf 98.0 6.4E-06 1.4E-10 86.7 4.3 98 284-387 46-145 (293)
163 PF10294 Methyltransf_16: Puta 97.9 5.9E-05 1.3E-09 74.6 10.4 102 283-387 45-158 (173)
164 TIGR00479 rumA 23S rRNA (uraci 97.9 5.4E-05 1.2E-09 85.0 11.2 96 284-386 293-397 (431)
165 PRK10909 rsmD 16S rRNA m(2)G96 97.9 0.00014 3E-09 73.8 12.7 99 284-386 54-160 (199)
166 COG1352 CheR Methylase of chem 97.9 0.00012 2.5E-09 77.5 12.5 103 283-385 96-241 (268)
167 PRK00107 gidB 16S rRNA methylt 97.9 3.9E-05 8.4E-10 77.0 8.2 130 547-690 47-187 (187)
168 TIGR00755 ksgA dimethyladenosi 97.9 0.00012 2.5E-09 76.6 11.6 68 284-356 30-103 (253)
169 PF01596 Methyltransf_3: O-met 97.8 7.4E-05 1.6E-09 76.1 9.7 100 284-387 46-157 (205)
170 PLN02476 O-methyltransferase 97.8 0.00011 2.5E-09 78.0 11.4 100 283-386 118-229 (278)
171 PF08704 GCD14: tRNA methyltra 97.8 7.7E-05 1.7E-09 78.1 9.9 109 266-388 31-149 (247)
172 PRK01544 bifunctional N5-gluta 97.8 5.5E-05 1.2E-09 86.8 9.2 103 282-386 346-463 (506)
173 PRK11207 tellurite resistance 97.8 1.5E-05 3.3E-10 80.2 3.9 94 547-650 32-132 (197)
174 PRK04148 hypothetical protein; 97.8 0.00012 2.5E-09 69.9 9.5 91 284-385 17-109 (134)
175 PRK12335 tellurite resistance 97.8 2.3E-05 5E-10 83.4 4.8 114 548-674 123-257 (287)
176 PLN02244 tocopherol O-methyltr 97.8 1.8E-05 3.8E-10 86.4 4.0 95 546-652 119-223 (340)
177 TIGR00477 tehB tellurite resis 97.8 2.6E-05 5.6E-10 78.4 4.8 93 547-650 32-131 (195)
178 PLN02672 methionine S-methyltr 97.8 7.3E-05 1.6E-09 91.8 9.4 101 284-386 119-279 (1082)
179 PRK11727 23S rRNA mA1618 methy 97.8 0.00024 5.2E-09 77.1 12.4 97 259-356 90-198 (321)
180 COG4122 Predicted O-methyltran 97.7 0.0002 4.3E-09 73.6 11.0 100 283-386 59-167 (219)
181 TIGR02752 MenG_heptapren 2-hep 97.7 6.7E-05 1.5E-09 76.5 7.6 96 547-652 47-151 (231)
182 PF05185 PRMT5: PRMT5 arginine 97.7 0.00011 2.3E-09 83.3 9.8 97 284-382 187-294 (448)
183 KOG2904 Predicted methyltransf 97.7 0.00028 6.1E-09 74.0 12.0 120 261-387 131-287 (328)
184 PLN02823 spermine synthase 97.7 0.00025 5.3E-09 77.5 12.1 102 283-386 103-221 (336)
185 TIGR02085 meth_trns_rumB 23S r 97.7 0.0002 4.4E-09 79.2 11.5 96 284-386 234-335 (374)
186 KOG1269 SAM-dependent methyltr 97.7 5.3E-05 1.2E-09 83.3 6.7 101 284-387 111-217 (364)
187 PF07942 N2227: N2227-like pro 97.7 0.00033 7.1E-09 74.2 12.0 136 283-422 56-242 (270)
188 smart00828 PKS_MT Methyltransf 97.7 3.5E-05 7.7E-10 78.2 4.4 95 547-652 1-104 (224)
189 PLN02233 ubiquinone biosynthes 97.7 3.6E-05 7.8E-10 81.0 4.3 98 547-652 75-182 (261)
190 KOG1661 Protein-L-isoaspartate 97.7 0.00022 4.7E-09 72.4 9.3 94 285-385 84-193 (237)
191 PF12847 Methyltransf_18: Meth 97.6 1.7E-05 3.7E-10 71.2 1.3 98 547-652 3-111 (112)
192 KOG1499 Protein arginine N-met 97.6 0.00013 2.8E-09 78.9 7.9 97 283-382 60-164 (346)
193 PTZ00338 dimethyladenosine tra 97.6 0.00018 3.8E-09 77.2 8.7 86 262-361 23-114 (294)
194 COG2521 Predicted archaeal met 97.6 0.00024 5.2E-09 73.1 8.8 146 261-419 118-274 (287)
195 PRK10258 biotin biosynthesis p 97.6 7.8E-05 1.7E-09 77.3 5.3 94 546-651 43-139 (251)
196 TIGR00537 hemK_rel_arch HemK-r 97.6 0.00015 3.2E-09 71.5 7.0 121 547-675 21-164 (179)
197 COG1041 Predicted DNA modifica 97.6 0.00052 1.1E-08 74.6 11.3 115 261-386 183-311 (347)
198 PRK14103 trans-aconitate 2-met 97.6 6.3E-05 1.4E-09 78.4 4.2 94 547-651 31-125 (255)
199 PRK11036 putative S-adenosyl-L 97.5 3.6E-05 7.7E-10 80.3 2.2 94 547-651 46-148 (255)
200 PRK11933 yebU rRNA (cytosine-C 97.5 0.00072 1.6E-08 77.0 12.7 108 283-390 113-247 (470)
201 PRK15068 tRNA mo(5)U34 methylt 97.5 6E-05 1.3E-09 81.8 3.9 96 547-651 124-225 (322)
202 COG2263 Predicted RNA methylas 97.5 0.00041 8.8E-09 69.5 9.3 69 283-356 45-117 (198)
203 PF01170 UPF0020: Putative RNA 97.5 0.00052 1.1E-08 68.3 9.7 100 284-384 29-150 (179)
204 TIGR00138 gidB 16S rRNA methyl 97.5 8.2E-05 1.8E-09 74.2 3.9 114 547-675 44-166 (181)
205 PF02353 CMAS: Mycolic acid cy 97.5 4.5E-05 9.8E-10 80.9 1.6 97 548-651 65-165 (273)
206 PTZ00098 phosphoethanolamine N 97.5 6.2E-05 1.3E-09 79.2 2.6 97 547-653 54-157 (263)
207 PLN02589 caffeoyl-CoA O-methyl 97.4 0.00054 1.2E-08 71.8 9.3 99 284-386 80-191 (247)
208 PRK08317 hypothetical protein; 97.4 0.00013 2.8E-09 73.6 4.2 97 547-652 21-124 (241)
209 TIGR00095 RNA methyltransferas 97.4 0.0024 5.2E-08 64.2 12.9 99 284-386 50-160 (189)
210 KOG3191 Predicted N6-DNA-methy 97.4 0.0012 2.7E-08 65.7 10.5 107 283-390 43-173 (209)
211 PRK00121 trmB tRNA (guanine-N( 97.4 0.0002 4.2E-09 72.5 5.1 125 546-674 41-179 (202)
212 PRK00536 speE spermidine synth 97.4 0.0025 5.4E-08 67.4 13.5 94 283-388 72-174 (262)
213 PRK08287 cobalt-precorrin-6Y C 97.4 0.00024 5.1E-09 70.6 5.5 111 547-670 33-150 (187)
214 PRK11088 rrmA 23S rRNA methylt 97.4 0.00024 5.2E-09 74.9 5.8 91 547-652 87-181 (272)
215 PRK00517 prmA ribosomal protei 97.4 0.0005 1.1E-08 71.8 8.1 110 547-674 121-236 (250)
216 TIGR00406 prmA ribosomal prote 97.3 0.00026 5.6E-09 75.5 5.7 114 547-674 161-281 (288)
217 PF01728 FtsJ: FtsJ-like methy 97.3 0.0003 6.5E-09 69.4 5.7 98 283-387 23-141 (181)
218 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0013 2.7E-08 73.2 10.9 95 285-385 59-158 (382)
219 PF02527 GidB: rRNA small subu 97.3 0.0019 4.1E-08 64.9 11.1 93 286-385 51-148 (184)
220 PF12147 Methyltransf_20: Puta 97.3 0.002 4.4E-08 68.5 11.6 137 283-420 135-296 (311)
221 TIGR02072 BioC biotin biosynth 97.3 0.00015 3.3E-09 73.3 3.2 96 547-652 36-135 (240)
222 KOG2352 Predicted spermine/spe 97.3 0.0015 3.3E-08 73.5 11.2 128 250-386 20-162 (482)
223 PRK11705 cyclopropane fatty ac 97.3 0.00017 3.6E-09 80.2 3.6 95 547-651 169-266 (383)
224 PF09243 Rsm22: Mitochondrial 97.3 0.0032 7E-08 66.9 12.7 104 282-389 32-143 (274)
225 PF11968 DUF3321: Putative met 97.2 0.0016 3.4E-08 66.7 9.4 126 285-430 53-193 (219)
226 PLN02396 hexaprenyldihydroxybe 97.2 0.0002 4.3E-09 77.9 2.9 95 547-652 133-235 (322)
227 TIGR00452 methyltransferase, p 97.2 0.00026 5.5E-09 76.7 3.8 97 547-651 123-224 (314)
228 PRK09328 N5-glutamine S-adenos 97.2 0.00094 2E-08 69.9 7.8 138 547-689 110-275 (275)
229 TIGR00438 rrmJ cell division p 97.2 0.0008 1.7E-08 66.9 6.8 128 547-688 34-186 (188)
230 KOG1500 Protein arginine N-met 97.2 0.0014 3E-08 70.4 8.6 97 283-383 177-280 (517)
231 TIGR03439 methyl_EasF probable 97.2 0.0033 7.3E-08 68.3 11.8 103 284-386 77-198 (319)
232 COG0421 SpeE Spermidine syntha 97.2 0.0053 1.1E-07 65.6 13.1 103 283-387 76-192 (282)
233 TIGR01934 MenG_MenH_UbiE ubiqu 97.1 0.00085 1.8E-08 67.3 6.7 97 547-652 41-143 (223)
234 PRK01683 trans-aconitate 2-met 97.1 0.00078 1.7E-08 70.1 6.5 115 546-671 32-153 (258)
235 PTZ00146 fibrillarin; Provisio 97.1 0.00046 9.9E-09 73.8 4.5 103 539-651 128-236 (293)
236 PF08242 Methyltransf_12: Meth 97.1 0.00034 7.3E-09 61.8 2.8 90 550-648 1-99 (99)
237 TIGR03534 RF_mod_PrmC protein- 97.1 0.00092 2E-08 68.7 6.4 134 547-685 89-250 (251)
238 PF01564 Spermine_synth: Sperm 97.1 0.0034 7.5E-08 65.7 10.5 103 283-387 76-193 (246)
239 KOG3178 Hydroxyindole-O-methyl 97.1 0.0023 4.9E-08 69.6 9.3 101 283-389 177-279 (342)
240 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.0021 4.4E-08 67.8 8.7 104 283-388 56-202 (256)
241 PF05401 NodS: Nodulation prot 97.0 0.00029 6.2E-09 71.1 2.2 136 543-687 41-192 (201)
242 TIGR00740 methyltransferase, p 97.0 0.00071 1.5E-08 69.8 5.2 98 547-653 55-162 (239)
243 PRK14968 putative methyltransf 97.0 0.0016 3.4E-08 63.8 6.9 121 547-674 25-171 (188)
244 KOG3201 Uncharacterized conser 97.0 0.00031 6.8E-09 68.6 1.7 135 285-431 31-176 (201)
245 COG0030 KsgA Dimethyladenosine 97.0 0.003 6.5E-08 66.6 9.1 83 263-356 18-104 (259)
246 PF02475 Met_10: Met-10+ like- 97.0 0.0021 4.6E-08 65.3 7.6 93 283-382 101-199 (200)
247 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.0024 5.2E-08 68.4 8.4 118 261-386 32-184 (311)
248 COG2226 UbiE Methylase involve 96.9 0.00074 1.6E-08 70.4 3.7 96 547-651 53-155 (238)
249 PF01209 Ubie_methyltran: ubiE 96.9 0.00061 1.3E-08 70.8 2.9 96 548-651 50-152 (233)
250 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0052 1.1E-07 67.9 10.1 94 285-387 208-322 (362)
251 TIGR02143 trmA_only tRNA (urac 96.8 0.007 1.5E-07 66.6 10.3 94 285-387 199-313 (353)
252 PRK00216 ubiE ubiquinone/menaq 96.7 0.0035 7.5E-08 63.6 7.0 97 547-652 53-158 (239)
253 TIGR01983 UbiG ubiquinone bios 96.7 0.00098 2.1E-08 67.5 2.9 95 547-652 47-149 (224)
254 PRK05785 hypothetical protein; 96.7 0.0013 2.9E-08 67.8 3.8 88 547-646 53-141 (226)
255 PRK00377 cbiT cobalt-precorrin 96.7 0.0025 5.5E-08 64.0 5.6 116 548-675 43-169 (198)
256 PRK15451 tRNA cmo(5)U34 methyl 96.7 0.0009 1.9E-08 69.7 2.3 101 547-653 58-165 (247)
257 PF03602 Cons_hypoth95: Conser 96.6 0.0052 1.1E-07 61.6 7.3 117 261-386 26-154 (183)
258 TIGR00536 hemK_fam HemK family 96.6 0.0048 1E-07 65.7 7.3 138 547-689 116-282 (284)
259 PRK11873 arsM arsenite S-adeno 96.6 0.0017 3.8E-08 68.1 3.8 97 547-652 79-183 (272)
260 TIGR00091 tRNA (guanine-N(7)-) 96.6 0.0028 6.1E-08 63.6 5.1 121 547-671 18-153 (194)
261 PRK06922 hypothetical protein; 96.6 0.0011 2.3E-08 77.6 2.3 104 547-653 420-538 (677)
262 TIGR02987 met_A_Alw26 type II 96.6 0.019 4E-07 66.4 12.4 73 284-356 32-121 (524)
263 PLN02490 MPBQ/MSBQ methyltrans 96.6 0.0035 7.5E-08 68.7 6.1 119 547-674 115-254 (340)
264 COG1092 Predicted SAM-dependen 96.6 0.011 2.3E-07 66.0 9.9 103 284-388 218-339 (393)
265 PRK15001 SAM-dependent 23S rib 96.5 0.042 9.1E-07 61.2 14.4 99 547-651 230-339 (378)
266 KOG0820 Ribosomal RNA adenine 96.5 0.011 2.4E-07 62.4 9.2 83 261-356 44-132 (315)
267 PRK11760 putative 23S rRNA C24 96.5 0.012 2.5E-07 64.4 9.5 94 283-386 211-306 (357)
268 PRK11188 rrmJ 23S rRNA methylt 96.5 0.011 2.4E-07 60.3 8.8 92 547-651 53-164 (209)
269 PF08123 DOT1: Histone methyla 96.5 0.0066 1.4E-07 62.0 7.0 119 255-384 21-157 (205)
270 PF03848 TehB: Tellurite resis 96.5 0.0013 2.7E-08 66.6 1.8 122 548-675 33-168 (192)
271 PRK00050 16S rRNA m(4)C1402 me 96.5 0.0057 1.2E-07 65.8 6.9 44 284-327 20-63 (296)
272 PRK05134 bifunctional 3-demeth 96.4 0.0018 3.8E-08 66.3 2.7 94 548-652 51-151 (233)
273 PF13847 Methyltransf_31: Meth 96.4 0.0026 5.6E-08 60.9 3.7 98 547-654 5-112 (152)
274 TIGR02716 C20_methyl_CrtF C-20 96.4 0.0024 5.2E-08 68.4 3.8 101 544-652 148-254 (306)
275 PRK14967 putative methyltransf 96.4 0.0041 9E-08 63.6 5.2 122 547-674 38-182 (223)
276 PRK04266 fibrillarin; Provisio 96.4 0.0091 2E-07 61.8 7.8 91 548-650 75-174 (226)
277 COG0357 GidB Predicted S-adeno 96.4 0.019 4.2E-07 59.0 9.7 94 284-383 68-166 (215)
278 PRK14966 unknown domain/N5-glu 96.4 0.012 2.6E-07 66.0 8.9 138 548-689 254-418 (423)
279 smart00138 MeTrc Methyltransfe 96.3 0.0053 1.1E-07 64.9 5.7 135 500-655 69-245 (264)
280 KOG3420 Predicted RNA methylas 96.3 0.0068 1.5E-07 58.5 5.8 72 283-356 48-123 (185)
281 COG1189 Predicted rRNA methyla 96.3 0.031 6.7E-07 58.1 10.9 129 283-418 79-220 (245)
282 TIGR03704 PrmC_rel_meth putati 96.3 0.006 1.3E-07 64.0 5.9 130 547-679 88-243 (251)
283 PF05148 Methyltransf_8: Hypot 96.3 0.0043 9.2E-08 63.4 4.5 110 546-676 73-185 (219)
284 PRK14121 tRNA (guanine-N(7)-)- 96.3 0.0051 1.1E-07 68.4 5.4 119 547-671 124-256 (390)
285 TIGR00080 pimt protein-L-isoas 96.3 0.0035 7.5E-08 63.8 3.6 88 547-651 79-176 (215)
286 COG0144 Sun tRNA and rRNA cyto 96.3 0.029 6.4E-07 61.9 11.1 108 283-390 156-293 (355)
287 TIGR00308 TRM1 tRNA(guanine-26 96.2 0.015 3.3E-07 64.6 8.7 96 285-385 46-147 (374)
288 PRK13944 protein-L-isoaspartat 96.2 0.0035 7.7E-08 63.5 3.4 92 547-651 74-172 (205)
289 PF00891 Methyltransf_2: O-met 96.2 0.0019 4.2E-08 66.6 1.4 123 508-652 73-199 (241)
290 cd02440 AdoMet_MTases S-adenos 96.2 0.0028 6.1E-08 53.6 2.2 95 548-651 1-103 (107)
291 PF00398 RrnaAD: Ribosomal RNA 96.2 0.034 7.3E-07 58.6 10.8 102 261-377 16-123 (262)
292 PF01269 Fibrillarin: Fibrilla 96.2 0.034 7.3E-07 57.4 10.3 120 261-386 52-179 (229)
293 TIGR02469 CbiT precorrin-6Y C5 96.1 0.0063 1.4E-07 55.0 4.0 91 547-651 21-121 (124)
294 PRK06202 hypothetical protein; 96.1 0.0045 9.8E-08 63.6 3.3 101 546-652 61-166 (232)
295 KOG3010 Methyltransferase [Gen 96.0 0.0035 7.7E-08 65.0 2.4 113 545-670 33-158 (261)
296 PRK09489 rsmC 16S ribosomal RN 96.0 0.005 1.1E-07 67.5 3.7 100 548-652 199-303 (342)
297 KOG1663 O-methyltransferase [S 96.0 0.061 1.3E-06 55.7 11.0 98 284-385 74-183 (237)
298 KOG1709 Guanidinoacetate methy 96.0 0.043 9.3E-07 56.3 9.8 118 256-385 83-206 (271)
299 COG2520 Predicted methyltransf 96.0 0.077 1.7E-06 58.2 12.4 100 284-390 189-294 (341)
300 PF10672 Methyltrans_SAM: S-ad 95.9 0.016 3.5E-07 62.1 7.0 103 284-388 124-241 (286)
301 COG0293 FtsJ 23S rRNA methylas 95.9 0.032 7E-07 56.9 8.8 98 283-386 45-160 (205)
302 COG4627 Uncharacterized protei 95.9 0.0025 5.5E-08 62.0 0.6 55 337-391 37-92 (185)
303 TIGR02081 metW methionine bios 95.9 0.007 1.5E-07 60.5 3.7 87 548-644 16-104 (194)
304 COG4976 Predicted methyltransf 95.9 0.0021 4.5E-08 66.2 -0.2 138 542-690 122-286 (287)
305 PRK04457 spermidine synthase; 95.9 0.022 4.9E-07 60.1 7.6 138 546-689 67-216 (262)
306 PF13679 Methyltransf_32: Meth 95.9 0.022 4.7E-07 54.4 6.8 96 283-388 25-134 (141)
307 PRK07580 Mg-protoporphyrin IX 95.8 0.0086 1.9E-07 60.8 4.0 99 546-653 64-167 (230)
308 KOG3045 Predicted RNA methylas 95.8 0.014 3.1E-07 61.2 5.4 105 548-675 183-290 (325)
309 PRK13942 protein-L-isoaspartat 95.7 0.011 2.3E-07 60.4 4.4 89 547-651 78-175 (212)
310 KOG2915 tRNA(1-methyladenosine 95.7 0.086 1.9E-06 55.8 11.0 110 264-387 94-212 (314)
311 PRK11783 rlmL 23S rRNA m(2)G24 95.7 0.063 1.4E-06 64.4 11.5 126 547-676 540-680 (702)
312 PF07021 MetW: Methionine bios 95.7 0.008 1.7E-07 60.7 3.2 115 547-673 15-164 (193)
313 TIGR03533 L3_gln_methyl protei 95.6 0.025 5.4E-07 60.4 6.9 120 547-672 123-270 (284)
314 COG2890 HemK Methylase of poly 95.6 0.047 1E-06 58.4 8.8 137 548-689 113-276 (280)
315 COG0742 N6-adenine-specific me 95.6 0.14 3E-06 51.7 11.5 101 283-386 43-155 (187)
316 COG2230 Cfa Cyclopropane fatty 95.5 0.011 2.3E-07 63.1 3.7 95 548-651 75-175 (283)
317 PF03059 NAS: Nicotianamine sy 95.5 0.099 2.1E-06 55.8 10.7 101 284-385 121-230 (276)
318 COG2265 TrmA SAM-dependent met 95.4 0.087 1.9E-06 59.7 10.6 98 283-387 293-398 (432)
319 PF06325 PrmA: Ribosomal prote 95.4 0.013 2.8E-07 63.1 3.7 115 547-674 163-281 (295)
320 TIGR03587 Pse_Me-ase pseudamin 95.4 0.012 2.5E-07 59.9 3.2 95 546-651 44-141 (204)
321 PF01728 FtsJ: FtsJ-like methy 95.4 0.013 2.8E-07 57.8 3.5 142 542-689 20-180 (181)
322 PF05175 MTS: Methyltransferas 95.4 0.018 3.9E-07 56.6 4.4 114 546-665 32-155 (170)
323 TIGR02021 BchM-ChlM magnesium 95.4 0.014 3E-07 59.4 3.7 99 546-653 56-159 (219)
324 PRK11805 N5-glutamine S-adenos 95.3 0.024 5.3E-07 61.2 5.5 115 547-667 135-277 (307)
325 PF13578 Methyltransf_24: Meth 95.2 0.0069 1.5E-07 54.3 0.8 96 288-385 1-105 (106)
326 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.1 0.03 6.5E-07 59.9 5.3 105 283-387 85-221 (283)
327 PF02390 Methyltransf_4: Putat 95.1 0.027 5.9E-07 57.0 4.7 121 548-672 20-156 (195)
328 PRK07402 precorrin-6B methylas 95.0 0.057 1.2E-06 54.0 6.9 109 547-668 42-159 (196)
329 PLN02668 indole-3-acetate carb 94.9 0.11 2.5E-06 57.9 9.2 46 343-389 158-241 (386)
330 PF13649 Methyltransf_25: Meth 94.8 0.0035 7.6E-08 55.8 -2.3 93 549-646 1-101 (101)
331 PRK00312 pcm protein-L-isoaspa 94.7 0.027 5.9E-07 57.0 3.7 85 547-651 80-174 (212)
332 PF04816 DUF633: Family of unk 94.5 0.35 7.7E-06 49.5 11.2 115 287-420 1-122 (205)
333 TIGR03438 probable methyltrans 94.5 0.02 4.4E-07 61.5 2.3 98 547-651 65-176 (301)
334 COG3897 Predicted methyltransf 94.4 0.13 2.8E-06 52.2 7.5 101 283-390 79-184 (218)
335 COG0116 Predicted N6-adenine-s 94.3 0.47 1E-05 52.8 12.2 127 256-386 168-345 (381)
336 PF04672 Methyltransf_19: S-ad 94.2 0.2 4.4E-06 53.2 8.8 106 283-389 68-194 (267)
337 TIGR01444 fkbM_fam methyltrans 94.2 0.069 1.5E-06 50.1 4.9 41 286-327 1-41 (143)
338 TIGR03840 TMPT_Se_Te thiopurin 94.1 0.041 8.9E-07 56.4 3.5 97 547-650 36-150 (213)
339 COG4076 Predicted RNA methylas 94.1 0.14 2.9E-06 51.7 6.8 94 285-383 34-133 (252)
340 PF05958 tRNA_U5-meth_tr: tRNA 94.0 0.16 3.4E-06 56.0 8.0 53 285-340 198-255 (352)
341 PF09445 Methyltransf_15: RNA 93.9 0.069 1.5E-06 52.8 4.4 67 285-354 1-76 (163)
342 KOG2798 Putative trehalase [Ca 93.8 0.34 7.4E-06 52.4 9.5 135 283-421 150-336 (369)
343 COG2227 UbiG 2-polyprenyl-3-me 93.8 0.039 8.5E-07 57.5 2.5 94 548-653 62-162 (243)
344 PF07091 FmrO: Ribosomal RNA m 93.7 0.67 1.4E-05 48.8 11.4 128 283-417 105-239 (251)
345 COG4262 Predicted spermidine s 93.7 0.32 6.9E-06 53.5 9.3 104 283-388 289-410 (508)
346 COG4123 Predicted O-methyltran 93.6 0.2 4.3E-06 52.8 7.3 125 546-673 45-191 (248)
347 TIGR00563 rsmB ribosomal RNA s 93.6 0.15 3.2E-06 57.6 6.9 102 547-651 240-367 (426)
348 PF13659 Methyltransf_26: Meth 93.5 0.02 4.4E-07 51.6 -0.0 97 548-650 3-113 (117)
349 PLN02781 Probable caffeoyl-CoA 93.4 0.061 1.3E-06 55.9 3.3 132 545-690 68-233 (234)
350 TIGR01177 conserved hypothetic 93.3 0.064 1.4E-06 58.3 3.4 114 548-669 185-309 (329)
351 KOG3115 Methyltransferase-like 93.2 0.13 2.9E-06 52.4 5.1 41 285-326 62-102 (249)
352 COG4798 Predicted methyltransf 93.2 0.6 1.3E-05 47.5 9.5 135 284-421 49-204 (238)
353 PRK13255 thiopurine S-methyltr 93.0 0.057 1.2E-06 55.6 2.3 95 548-650 40-153 (218)
354 PF08003 Methyltransf_9: Prote 92.8 0.13 2.9E-06 55.4 4.8 97 546-651 116-218 (315)
355 PF05219 DREV: DREV methyltran 92.7 0.11 2.3E-06 54.9 3.8 90 545-651 94-187 (265)
356 COG2264 PrmA Ribosomal protein 92.6 0.23 4.9E-06 53.7 6.1 117 545-675 162-287 (300)
357 KOG1540 Ubiquinone biosynthesi 92.3 0.21 4.5E-06 52.7 5.3 95 547-652 102-214 (296)
358 PRK14902 16S rRNA methyltransf 92.3 0.13 2.8E-06 58.4 4.1 103 547-651 252-378 (444)
359 COG0500 SmtA SAM-dependent met 92.2 0.24 5.2E-06 43.2 4.9 94 549-654 52-157 (257)
360 TIGR00446 nop2p NOL1/NOP2/sun 92.1 0.22 4.8E-06 52.6 5.4 100 548-651 74-198 (264)
361 COG5459 Predicted rRNA methyla 92.0 1 2.2E-05 49.5 10.1 107 283-389 113-229 (484)
362 COG1064 AdhP Zn-dependent alco 91.7 0.69 1.5E-05 50.8 8.6 95 283-387 166-261 (339)
363 PF06080 DUF938: Protein of un 91.6 0.41 9E-06 49.0 6.5 134 548-689 28-204 (204)
364 KOG1122 tRNA and rRNA cytosine 91.5 0.72 1.6E-05 51.7 8.6 110 279-389 237-375 (460)
365 TIGR00478 tly hemolysin TlyA f 91.3 0.25 5.4E-06 51.4 4.6 109 546-674 76-215 (228)
366 PRK10901 16S rRNA methyltransf 91.2 0.41 8.9E-06 54.1 6.6 102 548-652 247-372 (427)
367 KOG2187 tRNA uracil-5-methyltr 90.6 0.31 6.7E-06 55.7 4.8 52 285-339 385-441 (534)
368 PRK13943 protein-L-isoaspartat 90.1 0.25 5.5E-06 53.9 3.5 89 547-651 82-179 (322)
369 COG0220 Predicted S-adenosylme 89.9 0.5 1.1E-05 49.1 5.4 118 547-666 50-180 (227)
370 KOG2793 Putative N2,N2-dimethy 89.4 2.9 6.3E-05 44.1 10.6 102 284-388 87-202 (248)
371 PF04989 CmcI: Cephalosporin h 89.4 0.68 1.5E-05 47.5 5.7 102 284-387 33-149 (206)
372 TIGR00417 speE spermidine synt 89.2 1.2 2.7E-05 47.1 7.8 101 546-651 73-185 (270)
373 cd08283 FDH_like_1 Glutathione 89.2 2.1 4.5E-05 47.3 9.9 101 284-386 185-307 (386)
374 COG1889 NOP1 Fibrillarin-like 89.1 3.8 8.2E-05 42.2 10.6 117 262-386 56-181 (231)
375 PRK14903 16S rRNA methyltransf 89.0 0.51 1.1E-05 53.5 5.0 101 548-651 240-365 (431)
376 cd04789 HTH_Cfa Helix-Turn-Hel 89.0 0.02 4.4E-07 51.9 -5.0 59 125-193 33-91 (102)
377 PRK14904 16S rRNA methyltransf 88.7 0.73 1.6E-05 52.4 6.1 100 547-652 252-377 (445)
378 PLN03075 nicotianamine synthas 88.7 0.56 1.2E-05 50.7 4.8 141 545-691 123-276 (296)
379 PF05971 Methyltransf_10: Prot 88.6 1.4 3.1E-05 47.6 7.8 93 260-356 82-186 (299)
380 PLN02232 ubiquinone biosynthes 88.5 0.28 6E-06 47.8 2.2 47 600-652 35-81 (160)
381 PF06962 rRNA_methylase: Putat 88.4 2.1 4.5E-05 41.4 8.0 79 310-388 1-95 (140)
382 cd08254 hydroxyacyl_CoA_DH 6-h 88.3 2.2 4.8E-05 45.1 9.1 93 284-386 166-264 (338)
383 PF10294 Methyltransf_16: Puta 88.1 0.35 7.6E-06 47.8 2.6 96 545-651 45-155 (173)
384 PRK09880 L-idonate 5-dehydroge 87.8 2.5 5.5E-05 45.7 9.3 95 284-386 170-267 (343)
385 KOG1271 Methyltransferases [Ge 87.6 1.1 2.4E-05 45.2 5.7 116 548-667 70-196 (227)
386 PRK09424 pntA NAD(P) transhydr 87.2 3.6 7.7E-05 47.8 10.4 101 283-386 164-286 (509)
387 PF03492 Methyltransf_7: SAM d 87.2 1.6 3.4E-05 48.0 7.2 77 283-361 16-120 (334)
388 KOG1562 Spermidine synthase [A 86.8 1 2.2E-05 48.5 5.3 103 283-387 121-238 (337)
389 PRK01581 speE spermidine synth 86.6 1.4 2.9E-05 49.1 6.3 106 545-653 150-269 (374)
390 PF03269 DUF268: Caenorhabditi 86.5 0.45 9.8E-06 47.0 2.3 44 345-388 61-114 (177)
391 PRK00811 spermidine synthase; 86.5 0.57 1.2E-05 50.1 3.3 103 545-651 76-190 (283)
392 KOG2361 Predicted methyltransf 86.0 0.68 1.5E-05 48.5 3.4 99 548-653 74-184 (264)
393 PRK14901 16S rRNA methyltransf 85.7 1.5 3.3E-05 49.7 6.3 117 548-666 255-402 (434)
394 KOG0822 Protein kinase inhibit 85.6 1.8 4E-05 49.8 6.8 121 261-384 346-477 (649)
395 PF06859 Bin3: Bicoid-interact 85.4 0.46 1E-05 44.0 1.7 37 347-384 1-43 (110)
396 cd04775 HTH_Cfa-like Helix-Tur 85.0 0.043 9.2E-07 49.8 -5.3 58 125-192 33-90 (102)
397 PF02527 GidB: rRNA small subu 85.0 2.7 5.9E-05 42.3 7.1 136 506-674 26-173 (184)
398 PLN02585 magnesium protoporphy 84.0 1.5 3.3E-05 47.8 5.2 93 547-649 146-247 (315)
399 KOG2904 Predicted methyltransf 83.9 4.1 8.9E-05 43.7 8.0 161 506-689 128-327 (328)
400 PRK15128 23S rRNA m(5)C1962 me 83.8 1.2 2.7E-05 49.9 4.5 125 547-675 222-368 (396)
401 TIGR00006 S-adenosyl-methyltra 83.8 4.3 9.3E-05 44.2 8.4 43 284-327 21-63 (305)
402 COG0286 HsdM Type I restrictio 83.3 8.3 0.00018 44.6 11.0 105 284-388 187-329 (489)
403 PHA01634 hypothetical protein 83.3 6.2 0.00014 37.8 8.1 67 283-352 28-97 (156)
404 PF03291 Pox_MCEL: mRNA cappin 83.3 0.48 1E-05 52.0 0.9 58 603-662 139-198 (331)
405 PLN02476 O-methyltransferase 82.8 1.5 3.3E-05 47.0 4.5 133 545-690 118-278 (278)
406 cd04790 HTH_Cfa-like_unk Helix 82.3 0.26 5.7E-06 49.0 -1.4 60 124-193 33-94 (172)
407 PF00107 ADH_zinc_N: Zinc-bind 81.8 2.6 5.6E-05 38.6 5.1 86 293-388 1-92 (130)
408 KOG2198 tRNA cytosine-5-methyl 81.0 5.2 0.00011 44.4 7.8 108 283-390 155-301 (375)
409 PF02005 TRM: N2,N2-dimethylgu 80.9 8.5 0.00018 43.1 9.7 98 284-386 50-155 (377)
410 cd08245 CAD Cinnamyl alcohol d 80.9 9.1 0.0002 40.6 9.6 94 284-386 163-257 (330)
411 TIGR02822 adh_fam_2 zinc-bindi 80.8 9.5 0.00021 41.2 9.8 90 283-386 165-255 (329)
412 PRK03612 spermidine synthase; 80.6 3.2 7E-05 48.3 6.5 122 546-670 298-438 (521)
413 PHA03411 putative methyltransf 80.2 1.8 3.9E-05 46.4 3.8 99 547-650 66-181 (279)
414 COG4106 Tam Trans-aconitate me 80.0 3 6.5E-05 43.3 5.2 139 542-694 27-191 (257)
415 PF10354 DUF2431: Domain of un 79.9 20 0.00043 35.5 10.9 119 290-419 3-149 (166)
416 PF07757 AdoMet_MTase: Predict 79.7 1.6 3.4E-05 40.5 2.8 31 283-316 58-88 (112)
417 cd05188 MDR Medium chain reduc 79.6 11 0.00023 38.2 9.3 93 283-387 134-234 (271)
418 TIGR00479 rumA 23S rRNA (uraci 79.5 2.5 5.5E-05 47.7 5.1 113 547-674 294-418 (431)
419 PLN02366 spermidine synthase 79.4 3.6 7.7E-05 44.8 6.0 103 545-651 91-205 (308)
420 KOG0024 Sorbitol dehydrogenase 79.2 11 0.00024 41.4 9.4 99 283-388 169-276 (354)
421 PF01596 Methyltransf_3: O-met 78.7 1.1 2.3E-05 46.0 1.6 133 545-690 45-205 (205)
422 COG3510 CmcI Cephalosporin hyd 78.5 6.2 0.00013 40.3 6.8 107 283-390 69-185 (237)
423 KOG2920 Predicted methyltransf 78.5 1.5 3.2E-05 46.9 2.6 99 283-384 116-233 (282)
424 COG2384 Predicted SAM-dependen 78.5 33 0.00071 35.8 12.1 117 285-420 18-141 (226)
425 cd08232 idonate-5-DH L-idonate 78.3 11 0.00023 40.3 9.2 93 284-386 166-263 (339)
426 cd00315 Cyt_C5_DNA_methylase C 78.3 5.8 0.00013 42.2 7.1 67 286-355 2-70 (275)
427 KOG3115 Methyltransferase-like 78.0 3 6.4E-05 42.9 4.4 22 633-654 164-185 (249)
428 PF01861 DUF43: Protein of unk 77.8 52 0.0011 34.8 13.6 123 283-418 44-174 (243)
429 PHA03412 putative methyltransf 77.7 2.3 4.9E-05 44.7 3.7 98 548-650 52-160 (241)
430 COG3129 Predicted SAM-dependen 77.7 5.4 0.00012 41.8 6.3 96 258-356 55-162 (292)
431 PRK11524 putative methyltransf 77.3 2.2 4.8E-05 45.5 3.6 54 330-383 8-78 (284)
432 KOG1099 SAM-dependent methyltr 76.9 2.8 6E-05 43.8 3.9 97 284-386 42-164 (294)
433 PRK04148 hypothetical protein; 76.5 5.3 0.00011 38.4 5.5 93 547-677 18-111 (134)
434 cd08234 threonine_DH_like L-th 76.3 16 0.00034 38.8 9.8 94 283-386 159-258 (334)
435 KOG1501 Arginine N-methyltrans 75.7 4.7 0.0001 45.7 5.5 66 257-326 42-107 (636)
436 cd04782 HTH_BltR Helix-Turn-He 75.4 0.49 1.1E-05 42.5 -1.7 58 125-189 33-90 (97)
437 cd08237 ribitol-5-phosphate_DH 75.3 12 0.00027 40.5 8.7 94 283-386 163-257 (341)
438 KOG1596 Fibrillarin and relate 75.2 14 0.00031 39.0 8.5 121 261-388 135-264 (317)
439 COG4627 Uncharacterized protei 74.9 0.64 1.4E-05 45.7 -1.1 48 598-651 38-85 (185)
440 smart00650 rADc Ribosomal RNA 74.6 2.6 5.7E-05 41.1 3.0 94 547-653 15-114 (169)
441 PRK10742 putative methyltransf 73.8 14 0.0003 39.2 8.2 83 265-356 76-173 (250)
442 cd08230 glucose_DH Glucose deh 73.4 15 0.00033 39.7 8.9 92 284-386 173-270 (355)
443 TIGR03451 mycoS_dep_FDH mycoth 73.3 14 0.00031 40.1 8.7 94 284-386 177-277 (358)
444 TIGR00561 pntA NAD(P) transhyd 72.7 10 0.00022 44.2 7.6 95 283-382 163-281 (511)
445 PRK13168 rumA 23S rRNA m(5)U19 72.6 5.9 0.00013 45.0 5.7 111 547-673 299-421 (443)
446 PF01135 PCMT: Protein-L-isoas 72.3 2 4.3E-05 44.1 1.6 90 548-650 75-170 (209)
447 KOG2730 Methylase [General fun 71.6 5 0.00011 41.8 4.2 93 284-380 95-197 (263)
448 COG4122 Predicted O-methyltran 71.3 7.2 0.00016 40.5 5.4 132 545-690 59-218 (219)
449 cd08239 THR_DH_like L-threonin 70.9 17 0.00037 38.9 8.5 94 284-386 164-263 (339)
450 cd08281 liver_ADH_like1 Zinc-d 70.7 19 0.00041 39.4 8.9 93 284-386 192-291 (371)
451 PRK13699 putative methylase; P 70.3 5.6 0.00012 41.3 4.4 50 631-690 51-100 (227)
452 KOG2539 Mitochondrial/chloropl 70.2 15 0.00033 42.0 8.0 106 283-389 200-319 (491)
453 COG0789 SoxR Predicted transcr 70.0 2.3 4.9E-05 39.2 1.3 32 126-160 34-65 (124)
454 TIGR03366 HpnZ_proposed putati 69.9 18 0.0004 37.9 8.3 94 283-386 120-219 (280)
455 PRK13749 transcriptional regul 69.8 2.3 4.9E-05 40.1 1.3 33 125-160 36-68 (121)
456 COG2813 RsmC 16S RNA G1207 met 69.7 5.9 0.00013 42.9 4.5 98 548-651 161-265 (300)
457 cd08255 2-desacetyl-2-hydroxye 69.3 25 0.00054 36.2 9.1 93 283-386 97-191 (277)
458 COG4301 Uncharacterized conser 69.3 55 0.0012 35.0 11.2 102 284-388 79-196 (321)
459 TIGR02825 B4_12hDH leukotriene 69.2 39 0.00085 35.9 10.8 92 284-385 139-237 (325)
460 PRK13752 putative transcriptio 68.7 1.3 2.9E-05 42.8 -0.6 34 124-160 39-72 (144)
461 TIGR01202 bchC 2-desacetyl-2-h 68.1 22 0.00048 37.9 8.6 86 284-386 145-232 (308)
462 cd04787 HTH_HMRTR_unk Helix-Tu 66.6 2.7 5.8E-05 39.9 1.0 34 124-160 32-65 (133)
463 PRK03522 rumB 23S rRNA methylu 66.6 3.4 7.4E-05 44.7 2.0 110 547-673 175-293 (315)
464 cd08261 Zn_ADH7 Alcohol dehydr 66.4 33 0.00071 36.6 9.5 94 283-386 159-259 (337)
465 KOG4589 Cell division protein 65.9 6.5 0.00014 40.1 3.6 101 283-389 69-188 (232)
466 KOG1270 Methyltransferases [Co 65.8 1.8 3.9E-05 46.0 -0.3 94 547-654 91-197 (282)
467 TIGR02054 MerD mercuric resist 65.6 3.5 7.5E-05 38.8 1.6 33 125-160 36-68 (120)
468 KOG1541 Predicted protein carb 65.2 9.8 0.00021 39.8 4.8 120 544-669 49-177 (270)
469 PLN03154 putative allyl alcoho 64.7 47 0.001 36.2 10.4 94 283-386 158-259 (348)
470 PRK11933 yebU rRNA (cytosine-C 64.3 8.2 0.00018 44.5 4.5 100 548-651 116-241 (470)
471 PF07942 N2227: N2227-like pro 63.7 5.1 0.00011 42.9 2.6 75 595-676 149-242 (270)
472 TIGR03201 dearomat_had 6-hydro 63.6 32 0.00069 37.3 8.8 95 283-386 166-273 (349)
473 PF05891 Methyltransf_PK: AdoM 63.5 5.2 0.00011 41.5 2.5 127 544-677 54-202 (218)
474 PF05185 PRMT5: PRMT5 arginine 63.4 5.9 0.00013 45.3 3.2 112 546-665 187-319 (448)
475 cd01111 HTH_MerD Helix-Turn-He 63.1 3.5 7.6E-05 37.8 1.1 33 124-159 32-64 (107)
476 cd04768 HTH_BmrR-like Helix-Tu 62.8 3.7 7.9E-05 36.8 1.1 33 125-160 33-65 (96)
477 KOG4300 Predicted methyltransf 62.2 5 0.00011 41.4 2.1 105 548-666 79-201 (252)
478 PF01555 N6_N4_Mtase: DNA meth 62.1 19 0.00042 35.7 6.3 41 283-326 191-231 (231)
479 cd04784 HTH_CadR-PbrR Helix-Tu 61.9 3.9 8.4E-05 38.4 1.2 33 125-160 33-65 (127)
480 cd01107 HTH_BmrR Helix-Turn-He 61.9 2.2 4.7E-05 39.0 -0.5 58 125-189 34-91 (108)
481 cd01282 HTH_MerR-like_sg3 Heli 61.4 3.9 8.5E-05 37.7 1.1 34 124-160 31-64 (112)
482 cd04763 HTH_MlrA-like Helix-Tu 61.3 3.7 8.1E-05 34.0 0.8 33 124-159 32-64 (68)
483 PLN02740 Alcohol dehydrogenase 61.2 34 0.00073 37.7 8.6 95 283-386 198-301 (381)
484 COG1063 Tdh Threonine dehydrog 61.1 34 0.00074 37.6 8.6 95 285-387 170-271 (350)
485 PLN02586 probable cinnamyl alc 60.7 26 0.00056 38.4 7.5 94 284-386 184-279 (360)
486 PRK10309 galactitol-1-phosphat 60.6 40 0.00086 36.3 8.9 94 284-386 161-261 (347)
487 KOG2651 rRNA adenine N-6-methy 60.6 13 0.00029 41.5 5.1 41 283-325 153-193 (476)
488 PRK01747 mnmC bifunctional tRN 60.6 29 0.00063 41.5 8.5 100 284-383 58-204 (662)
489 TIGR02044 CueR Cu(I)-responsiv 60.4 5.3 0.00011 37.5 1.8 33 124-159 32-64 (127)
490 COG0287 TyrA Prephenate dehydr 60.2 37 0.00081 36.5 8.4 90 285-382 4-95 (279)
491 cd01110 HTH_SoxR Helix-Turn-He 59.9 4.3 9.2E-05 39.0 1.1 33 124-159 32-64 (139)
492 cd00401 AdoHcyase S-adenosyl-L 59.7 40 0.00088 38.3 8.9 88 283-386 201-290 (413)
493 PF04445 SAM_MT: Putative SAM- 59.2 22 0.00047 37.4 6.2 83 265-356 63-160 (234)
494 cd08242 MDR_like Medium chain 59.2 58 0.0013 34.3 9.7 88 284-384 156-244 (319)
495 TIGR02047 CadR-PbrR Cd(II)/Pb( 58.7 4.8 0.0001 37.9 1.2 33 125-160 33-65 (127)
496 cd05278 FDH_like Formaldehyde 58.5 48 0.0011 35.3 9.0 93 284-385 168-267 (347)
497 cd04788 HTH_NolA-AlbR Helix-Tu 58.4 4.7 0.0001 36.1 1.0 33 125-160 33-65 (96)
498 PRK10227 DNA-binding transcrip 58.2 5.8 0.00013 37.9 1.7 27 124-150 32-58 (135)
499 cd01105 HTH_GlnR-like Helix-Tu 57.9 4.9 0.00011 35.4 1.0 32 126-160 35-66 (88)
500 cd04785 HTH_CadR-PbrR-like Hel 57.5 6.4 0.00014 37.0 1.8 34 124-160 32-65 (126)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.4e-140 Score=1149.73 Aligned_cols=496 Identities=45% Similarity=0.906 Sum_probs=468.8
Q ss_pred CccccCCchhhhhh--ccccccccccCCCC-ccccccccCCCCCCCCCCCCCCCCcccccccccchhHhhhhcccccccc
Q 005417 164 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240 (697)
Q Consensus 164 ~~~PC~d~~~~~~~--~~~r~~~~er~C~~-~~r~rCL~~~p~gy~~P~~WP~srd~~W~~Nvp~~~~~~ls~~k~~q~W 240 (697)
|||||+|+++++++ .++|++|+|||||+ +++.+||+|+|.||+.|++||+|||++||+|+||++ |+++|..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999999 89999999999999 679999999999999999999999999999999999 6789999999
Q ss_pred cccchhhhccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005417 241 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 319 (697)
Q Consensus 241 ~~~d~~~~~F~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ 319 (697)
+..+++.+.|++++++| +++.+|++++.++++... .....+++||||||+|+|+++|+++++.+++++..|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999998 789999999999998621 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHh
Q 005417 320 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 399 (697)
Q Consensus 320 ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 399 (697)
++++|++||+++.+..+...+|||++++||+|||+.|++.|.++.+.+|.|++|+|||||+|+++.|..+. ..+++.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888889999999999999999999999988889999999999999999999998772 244567
Q ss_pred hhhhhhhhhhhhccceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccccCccccccCCCC-cccCCc
Q 005417 400 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 478 (697)
Q Consensus 400 ~~~W~~l~~la~~~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~~L~~Ci~~~p~~-~~~~~~ 478 (697)
...|+.|+.+++++||++++++++++|||||.+++||.+|+....|++|++.+|++++||++|++||+++|.. .++.++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 7899999999999999999999999999999999999999998889999999999999999999999999965 467789
Q ss_pred ccCCCCcccccCCcccee---cccCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccC
Q 005417 479 ERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH 555 (697)
Q Consensus 479 ~~~~WP~rl~~~~~~l~~---~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g 555 (697)
.+++||+||+++|+||.. .|.+++.|.+|+++|+++|++|++++...+ .+++||||||||||
T Consensus 311 ~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i---------------~~~~iRNVMDMnAg 375 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAI---------------KWGRIRNVMDMNAG 375 (506)
T ss_pred CCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccc---------------cccceeeeeeeccc
Confidence 999999999999999975 889999999999999999999999886444 56789999999999
Q ss_pred chhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCCCCCCCcchhh
Q 005417 556 FGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIF 635 (697)
Q Consensus 556 ~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l 635 (697)
||||||||.+ +|||||||||++++|||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++||
T Consensus 376 ~GGFAAAL~~--~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~---~rC~~~~il 450 (506)
T PF03141_consen 376 YGGFAAALID--DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK---DRCEMEDIL 450 (506)
T ss_pred ccHHHHHhcc--CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc---ccccHHHHH
Confidence 9999999987 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCC--CccEEEEEc
Q 005417 636 TEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 689 (697)
Q Consensus 636 ~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~--~~~~li~~K 689 (697)
+||||||||||++||||+.+++++|++||++|||+++++++|+++ +||||||||
T Consensus 451 lEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 451 LEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999999999986 699999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.7e-41 Score=371.74 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=175.4
Q ss_pred ccccccCCCCcccCCcccCCCCccc------ccCCccceeccc---------CccccccchhhHHHHHHHHHHhhccccc
Q 005417 463 QPCIGGTRNRRWIPIEERRNWPSRA------NLNKNELAVYGV---------HPEEFAEDTENWKTAVGNFWSLLSPLIF 527 (697)
Q Consensus 463 ~~Ci~~~p~~~~~~~~~~~~WP~rl------~~~~~~l~~~~~---------~~~~f~~d~~~w~~~v~~Y~~~l~~~~~ 527 (697)
..|++|+|.+|++|+ +||++. |+++++|+.++. +...|++++++|+++|.+|++.|.+|+.
T Consensus 35 ~~CLVp~P~gYk~P~----~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~ 110 (506)
T PF03141_consen 35 LRCLVPPPKGYKTPI----PWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIP 110 (506)
T ss_pred CccccCCCccCCCCC----CCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhh
Confidence 789999999999999 999966 788888876653 4577999999999999999999999883
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc---ccccccccccC
Q 005417 528 SDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAF 603 (697)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f 603 (697)
.. ...+.||++||+|||+|||||+|++ ++|.+|+++|.+.| +|+|||+|||+ ||++.+...||
T Consensus 111 ~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 111 LI-----------KWGGGIRTALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred cc-----------ccCCceEEEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC
Confidence 21 2347899999999999999999998 99999999999999 99999999998 66667778888
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc----------CHHHHHHHHHHHhhcCceeEE
Q 005417 604 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----------TARLIESARALTTRLKWDARV 673 (697)
Q Consensus 604 ~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----------~~~~~~~~~~~~~~~~W~~~~ 673 (697)
|. +|||||||++|...|.. .- ..+|+|+|||||||||||++. ..+++++|+++|++|||+..+
T Consensus 178 p~--~~fDmvHcsrc~i~W~~---~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 178 PS--NAFDMVHCSRCLIPWHP---ND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred Cc--cchhhhhcccccccchh---cc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 77 99999999999999983 22 469999999999999999963 358899999999999999999
Q ss_pred eeeccCCCccEEEEEccc
Q 005417 674 IEIESNSDERLLICQKPF 691 (697)
Q Consensus 674 ~~~e~~~~~~~li~~K~~ 691 (697)
.+ +++.|||||.
T Consensus 251 ~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 251 EK------GDTAIWQKPT 262 (506)
T ss_pred ee------CCEEEEeccC
Confidence 85 7799999985
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=1.1e-17 Score=188.35 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc--CCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~--~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..|++.+ ..++++|+++.|++.+++.. .++.+.+.++. .+++++++||+|+|..+ +
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-L 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh-H
Confidence 3689999999999999999874 46899999999998876532 24556666764 57888899999999988 5
Q ss_pred ccccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 359 DWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++.++ ...++++++|+|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 55444 3689999999999999999987543
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=1.4e-17 Score=171.37 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEeecccCCCCCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
.+.+|||||||||.++..+++... ..+|+++|+|+.|++.|+++... +.++.+|+++|||+|++||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 348999999999999999998843 68899999999999999987543 67889999999999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+++.++.+++|+|++|||||||.+++.+.....
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 888899999999999999999999998865543
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=5.7e-17 Score=167.16 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
.+.+|||+|||||.++..++++......|+++|+|+.|++.|+++ + .++.+.++|++++|+++++||+|+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg- 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG- 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh-
Confidence 347999999999999999988744557899999999999999865 2 3678899999999999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++..+|..++|+|++|+|||||.+++.+...
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 7777889999999999999999999988643
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=7.5e-16 Score=161.23 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=90.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
+..+|||||||+|.++..++++......|+++|+|++|++.|+++. .++.+.+++++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3479999999999999988876223357999999999999997652 24668888999999999999999999
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++ +|+.+++..+|+|+.|+|||||++++.+....
T Consensus 153 ~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 153 YG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 88 77778899999999999999999999987653
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=4.1e-16 Score=134.81 Aligned_cols=93 Identities=30% Similarity=0.463 Sum_probs=79.3
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--cEEEeecccCCCCCCCCccEEEeccccccccccHH
Q 005417 288 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 365 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~--~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~ 365 (697)
||||||+|.++..++++ ...+++++|+++++++.++++... ..+...+.+.+|+++++||+|++..+ ++|.+++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHH
Confidence 89999999999999998 356799999999999999987543 34788899999999999999999998 66668889
Q ss_pred HHHHHHHHhccCCeEEEE
Q 005417 366 ILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 366 ~~L~El~RvLKPGG~Lvi 383 (697)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.65 E-value=8.8e-16 Score=158.76 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=110.2
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005417 249 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 328 (697)
Q Consensus 249 ~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg 328 (697)
.|++.+..|+..+..++.+++.+..... .....+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 6888888887766666666555432221 1235789999999999999998764 46899999999999999876
Q ss_pred CCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 329 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 329 l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
....+.++|.+.+|+++++||+|+++.+ ++|.+++..+|.++.++|||||.++++.+....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 5566778899999999999999999987 889999999999999999999999999987654
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.52 E-value=1.1e-13 Score=131.55 Aligned_cols=98 Identities=30% Similarity=0.577 Sum_probs=82.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+ +++.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDV-LEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESS-GGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHH-Hhhcc
Confidence 358999999999999999988864 79999999999988 3333444444556677899999999998 77778
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++..+|+++.++|||||+++++++...
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999999999998753
No 10
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.52 E-value=8.1e-14 Score=142.58 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=102.5
Q ss_pred ccchhhhHHHHHHHHhcccc--------ccccccCCCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHH
Q 005417 257 FDGVEDYSHQIAEMIGLRNE--------SNFILAGVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQL 323 (697)
Q Consensus 257 yd~~~~y~~~l~~lL~l~~~--------~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~-----~~sV~gvD~S~~ml~~ 323 (697)
|+.++.+++.+.+.+.++.. ..+.+....++||++||||..+..+.++-.. ...|+..|+++.|+..
T Consensus 66 F~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 66 FESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAV 145 (296)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHH
Confidence 34445555555555544433 1233556789999999999999999887322 2679999999999988
Q ss_pred HHHcC----C----CcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 324 TLERG----L----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 324 A~erg----l----~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|. + .+.+..+|++.|||++++||+.+..+. +....+++++|+|++|||||||+|.+-++..
T Consensus 146 gkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 146 GKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 87653 2 256788899999999999999999988 7777889999999999999999999877643
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=9.2e-14 Score=144.42 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=85.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.. +...++++|+|+.|++.|++++ +.+.++|++.++ ++++||+|+|+.+ +||.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-hhhCC
Confidence 34899999999999999998873 3467999999999999998875 455667777775 5679999999988 78888
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++..++++++++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 8999999999999999999998764
No 12
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=9.6e-14 Score=139.08 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=148.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|.|+|||+|..|..|+++ ++...|+|+|.|++|++.|+++.+++.|..+|...+. ++..+|+++++.+ +||.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhcc
Confidence 4589999999999999999988 5778899999999999999999999999988988774 4568999999987 99999
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecCceEEEEecc-cccccccCCC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKP 441 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~~~~IwqK~~-~~~Cy~~R~~ 441 (697)
+...+|..+...|.|||.|.+..|....+ .....|++.+++..|+........ .+++. ..+-|-+.-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL- 174 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL- 174 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh-
Confidence 99999999999999999999998854321 234556677777777666554333 23332 233333221
Q ss_pred CCCCCCCCCCCCCCCCccccCccccccCCCCcccCCcccCCCCcccccCCccceecccCccccccchhhHHHHHHHHHHh
Q 005417 442 GSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSL 521 (697)
Q Consensus 442 ~~~p~lC~~~~d~~~~wY~~L~~Ci~~~p~~~~~~~~~~~~WP~rl~~~~~~l~~~~~~~~~f~~d~~~w~~~v~~Y~~~ 521 (697)
.+.-|. .+.++..||++|..-- +--.|+.+..+.+|=++| |++.|+.-...|..+
T Consensus 175 --a~~~~r-vDiW~T~Y~h~l~~a~---aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 175 --APLACR-VDIWHTTYYHQLPGAD---AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLAL 229 (257)
T ss_pred --Ccccce-eeeeeeeccccCCCcc---chhhheeccccceecccc-------------------CHHHHHHHHHHHHHH
Confidence 133443 6678999999764321 112344444444333333 667888888999988
Q ss_pred hcccc
Q 005417 522 LSPLI 526 (697)
Q Consensus 522 l~~~~ 526 (697)
|..-.
T Consensus 230 l~~aY 234 (257)
T COG4106 230 LAEAY 234 (257)
T ss_pred HHHhC
Confidence 87654
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=4e-14 Score=144.58 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=92.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|||||||.|.++..|++.| ..|+|+|.++.+++.|+.+ ++.+.+.+..++++....++||+|+|..+ +
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-l 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-L 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-H
Confidence 34799999999999999999997 5699999999999988744 56666777777888777789999999999 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhh
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA 392 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~ 392 (697)
+|.++++.+++.+.+.+||||.+++++++.....
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 7789999999999999999999999999876543
No 14
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.49 E-value=2e-13 Score=138.03 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=91.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
...+|||||||+|.++..+++.+ ....++++|+++.+++.++++.. ++.+...+...+++++++||+|++..+ +||.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhc
Confidence 34789999999999999998875 34568999999999998887643 456777888899998999999999988 7888
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.++..++.++.++|||||.++++++....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88999999999999999999999876543
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=2.8e-13 Score=147.08 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=88.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||||||+|.++..|++.. ...|+++|+|+.|++.|+++ ++ ++.+.++|+..+|+++++||+|+|..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45799999999999999998863 35799999999999887653 43 467888899999999999999999988
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++.++...+++++.|+|||||.|++.+..
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 555678889999999999999999998764
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.48 E-value=1.8e-13 Score=140.38 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||||||||.++..+++.. ..+++|+|+|++|++.|+++. .+.+++++.+|+++++||+|+|+++ +|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFA-LHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecCh-hhccCC
Confidence 4799999999999999998873 357999999999999998763 3456789999999999999999998 677889
Q ss_pred HHHHHHHHHHhccCC
Q 005417 364 DGILLLEVDRVLKPG 378 (697)
Q Consensus 364 ~~~~L~El~RvLKPG 378 (697)
++++++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999999995
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=5.5e-13 Score=135.89 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=88.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++.......++++|+++.|++.|+++ +. ++.+..++...+++++++||+|++..+ +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~-l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG-L 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc-c
Confidence 47999999999999999987632345799999999999888754 22 456777888888998899999999987 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++.++..++++++.++|+|||++++.++..
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 777888899999999999999999987654
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.46 E-value=1.7e-13 Score=147.66 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..|++.+ ..|+++|+++.|++.|+++. ..+.+.+++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45799999999999999998764 46899999999999987642 1466778888899988899999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
++|..++..+|+++.++|||||.+++++++...
T Consensus 208 -LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 208 -IEHVANPAEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred -HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 666788999999999999999999999986643
No 19
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=7.1e-13 Score=139.33 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc--eeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~--~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
...+|||||||+|.++..+++.... ...++|+|+|+.|++.|.++..++.+.++++..+|+++++||+|++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999998865211 2368999999999999998877788888999999999999999998754
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhh
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 395 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr 395 (697)
...+.|+.|+|||||+|++..+......+++
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 1246899999999999999999877655443
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=5.7e-13 Score=139.71 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+|||||||+|..+..+++.. ...++++|+|+.|++.|+++.. .+.+...|+...|+++++||+|++..+++|+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 3799999999999999987652 3579999999999999987632 4667778888899999999999998875665
Q ss_pred c-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 361 D-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. .+...++++++++|||||+|+++++..
T Consensus 131 ~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 131 SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 4 367889999999999999999998754
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=7.2e-13 Score=137.50 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..+++.. ....++++|+|+.|++.|+++..++.+..+|+..+. ++++||+|+|+.+ +||.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCC
Confidence 34799999999999999998763 446799999999999999988666777777877665 4569999999988 78888
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+...+++++.++|||||.+++..+.
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8889999999999999999998653
No 22
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.42 E-value=1.8e-13 Score=141.42 Aligned_cols=199 Identities=17% Similarity=0.221 Sum_probs=131.6
Q ss_pred cccccchhhhccccccccccchhhhHHHHHHHHhcccccccc-ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC
Q 005417 239 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFI-LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 317 (697)
Q Consensus 239 ~W~~~d~~~~~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~-~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S 317 (697)
+|++...+...+-+.+.||--... ++.+++..... .+. .....++||||+|.|..+..++.. ..+|++.|.|
T Consensus 53 ~~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~-~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S 125 (265)
T PF05219_consen 53 SWFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGF-SWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEAS 125 (265)
T ss_pred HHHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhcc-CCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCC
Confidence 466666666677788888854433 34444443211 111 124578999999999999999876 4569999999
Q ss_pred HHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH
Q 005417 318 GSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 397 (697)
Q Consensus 318 ~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~ 397 (697)
..|....+++|..+. +..++.-.+.+||+|.|.++ +....+|..+|++|++.|+|+|.++++...|.. +..
T Consensus 126 ~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~----pyV 196 (265)
T PF05219_consen 126 PPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR----PYV 196 (265)
T ss_pred HHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc----ccE
Confidence 999999999986533 33444444578999999998 777889999999999999999999999866643 122
Q ss_pred Hhhh-hhhhhhhhhhc--cceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccc
Q 005417 398 ENQK-RWNFVRDFVEN--LCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYR 460 (697)
Q Consensus 398 e~~~-~W~~l~~la~~--~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~ 460 (697)
|.-. .|.+..+..+- ..|+..+... + +...+..++.....+.||+|+ +|...+||+
T Consensus 197 E~~~g~~~~P~e~l~~~g~~~E~~v~~l----~-~v~~p~GF~v~~~tr~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 197 EFGGGKSNRPSELLPVKGATFEEQVSSL----V-NVFEPAGFEVERWTRLPYLCE--GDLYQSYYV 255 (265)
T ss_pred EcCCCCCCCchhhcCCCCCcHHHHHHHH----H-HHHHhcCCEEEEEeccCcccc--CcccCceEE
Confidence 2211 23333333221 2222221111 1 122233444455666799999 889999998
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=9e-13 Score=137.12 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=86.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-fpd~sFDlV~~~~ 355 (697)
...+|||||||+|.++..+++.+ .+|+++|+|+.|++.|+++ ++ ++.+.++++..++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999999885 4689999999999988765 32 3567777777764 6678999999998
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+ +++.+++..++.++.++|||||++++..++..
T Consensus 121 v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 V-LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred H-HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 8 77778888999999999999999999877643
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=8.9e-13 Score=126.25 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=87.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~ 355 (697)
...+|||+|||+|.++..|++...+...++++|.++.|++.|+++ +. ++.+.+.|..+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 457999999999999999995433456799999999999998863 44 4788889998887 66 7999999998
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ +++..++..+++++.++|++||.+++.++.
T Consensus 82 ~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 V-LHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp T-GGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-hhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8 677788889999999999999999999886
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=2.7e-12 Score=132.13 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccCCCCCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
...+|||||||+|.++..++++. .+...++++|+|+.|++.|+++ ..++.+...++..++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 34789999999999999988752 2356799999999999998765 12467788888888875 489999998
Q ss_pred ccccccc--cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 356 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~--d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +|+.+ +...++++++|+|||||.++++++..
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8 55553 34679999999999999999998754
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.40 E-value=2.7e-12 Score=129.52 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=88.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.......++++|.++.+++.++++ ...+.+...+...+++++++||+|++..+ ++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV-LQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech-hh
Confidence 37999999999999999988642446799999999999998876 33466777788888888899999999988 66
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..++..+++++.++|||||++++.++.
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 6778899999999999999999998864
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=8.1e-13 Score=118.92 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecc-cCCCCCCCCccEEEecc-
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da-~~LPfpd~sFDlV~~~~- 355 (697)
..+|||||||+|.++..++++. ....++++|+|+.|++.|+++. .++.+.+.+. ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 4789999999999999999931 2456999999999999887653 4677777787 333343 4699999998
Q ss_pred cccccc--ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~--~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..++. ++...+++++.+.|+|||++++.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 422232 3456899999999999999999763
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.37 E-value=4.3e-12 Score=137.57 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+...+++.+++++++||+|+++.+ +++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hhhC
Confidence 4799999999999998887752 2357999999999999988753 2456777888899999999999999988 6666
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..+|+++.|+|||||.+++..+.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 78889999999999999999987654
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.36 E-value=5e-12 Score=126.99 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..|++++ .+|+++|+|+.|++.+++. ++. +.+.+.+...++++ ++||+|+|+.+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-L 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-h
Confidence 3789999999999999999985 3689999999999887643 333 55666777777775 57999999988 5
Q ss_pred cccc--cHHHHHHHHHHhccCCeEEEEE
Q 005417 359 DWDQ--KDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 359 h~~~--d~~~~L~El~RvLKPGG~Lvis 384 (697)
|+.+ +...++.++.++|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5443 3468999999999999996654
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=9.5e-13 Score=117.54 Aligned_cols=93 Identities=25% Similarity=0.402 Sum_probs=74.4
Q ss_pred EEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 287 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g--~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
|||+|||+|..+..+++.. .....++++|+|++|++.++++. .++.+.++|..++++.+++||+|+|.++.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998763 12368999999999999998764 78899999999999989999999996663554
Q ss_pred ccc--HHHHHHHHHHhccCCe
Q 005417 361 DQK--DGILLLEVDRVLKPGG 379 (697)
Q Consensus 361 ~~d--~~~~L~El~RvLKPGG 379 (697)
..+ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 433 3679999999999998
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=8.2e-12 Score=125.20 Aligned_cols=97 Identities=15% Similarity=0.304 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.+|||+|||+|.++..+++++ ..|+++|+|+.|++.+++ .++++.+..++....+++ ++||+|+|+.+ +|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cc
Confidence 3689999999999999999885 468999999999987654 356666666676666665 58999999988 44
Q ss_pred cc--ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 360 WD--QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 360 ~~--~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+. ++...++++++++|||||++++.+
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 44 234679999999999999966653
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=5.2e-12 Score=136.27 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=82.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCcEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~--er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++.+. ..|+|+|+|+.|+..+. ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v- 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV- 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-
Confidence 47999999999999999998863 35999999999886432 22 2356778888899998 789999999988
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++|..++..+|++++++|+|||.+++.+.
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 55677888999999999999999999864
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=5.9e-12 Score=142.14 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|..+..+++.. ...++++|+|+.|++.|+++. ..+.+.++|...+++++++||+|+|..+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35799999999999999998762 357999999999999987652 2466778888888998899999999988 5
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|.+++..++++++|+|||||.++++++..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 666788899999999999999999998754
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=9.9e-12 Score=128.99 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
...+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+.+.++..+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4478999999999999888763 12456899999999999999865 22 466777888888775 499999998
Q ss_pred cccccccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 356 CGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +|+.++ ...++++++++|||||.|++++...
T Consensus 134 ~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred H-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8 555543 2579999999999999999998543
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.33 E-value=7.4e-12 Score=131.19 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=86.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...+|||||||+|..+..+++.......++++|+++.|++.|+++ +. ++.+...+.+.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 347999999999998877666522335799999999999998864 33 456777888899999899999999876
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.++...+++++.|+|||||+|++++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 7777888899999999999999999987643
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.30 E-value=1.6e-11 Score=131.96 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--c----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--R----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--r----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|||||||+|.++..++..+. ..|+|+|+|+.|+..+.. + ...+.+..++.+.+|.. ++||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 348999999999999999988753 368999999999865421 1 12445666777788865 48999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++|..++..+|++++++|||||.|++.+..
T Consensus 198 -L~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 -LYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred -hhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 555678889999999999999999998653
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=1.1e-12 Score=116.24 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=58.6
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCC--CCCCCccEEEeccccccc
Q 005417 288 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LP--fpd~sFDlV~~~~~llh~ 360 (697)
||||||+|.++..++++. +..+++++|+|+.|++.|+++ . .............. ...++||+|++..+ +||
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhh
Confidence 799999999999998874 678899999999999766554 1 12222322322222 12259999999998 666
Q ss_pred cccHHHHHHHHHHhccCCeEE
Q 005417 361 DQKDGILLLEVDRVLKPGGYF 381 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~L 381 (697)
.++...+++.++++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 688899999999999999986
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=4e-11 Score=121.42 Aligned_cols=100 Identities=16% Similarity=0.049 Sum_probs=81.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..|++.. ...+++|+|+|+.|++.|+++...+.+.++++.. |+++++||+|+|..+++|..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 34789999999999999998762 2457999999999999998865556677778777 889999999999998666543
Q ss_pred -cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 363 -KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 363 -d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..++++++.|++ ++++++.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 2367999999998 568888775
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=2.9e-11 Score=127.04 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHHcC--------C-----------------
Q 005417 283 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------L----------------- 329 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~gvD~S~~ml~~A~erg--------l----------------- 329 (697)
...+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34799999999996 4555555422 2468999999999999998631 1
Q ss_pred -------CcEEEeecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 330 -------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 -------~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.+.+.|....++++++||+|+|.++++++. ++..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35677788888888888999999999855543 233579999999999999999964
No 40
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=121.70 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=84.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCcE-EEeecccCCC-CCCCCccEEEecccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~~-~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
..|||||||||..-.++--. +..+|+++|+++.|-+++.++ ..++. +++++.+++| .+++|+|+|+|..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV- 154 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-
Confidence 46899999999986666432 456799999999998776543 34455 7889999999 89999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+--..++.+.|+|+.|+|||||.+++.+++..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 44467899999999999999999999988654
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.25 E-value=6.9e-11 Score=118.26 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=90.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+.+|||||||+|..+..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999888642 356899999999999877643 44 36677888888777 679999998743
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
.+...++.++.++|||||++++...... -..+..+++..+|.+..+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeee
Confidence 4567899999999999999999875421 123566677778887644
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=5.9e-11 Score=125.91 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||||||+|.++..|++.| ..|+++|.|+.+++.+++ .++++.+...|....++ +++||+|++..+ +++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhh
Confidence 589999999999999999886 468999999999987754 35666666667666555 678999999987 554
Q ss_pred cc--cHHHHHHHHHHhccCCeEEEEEe
Q 005417 361 DQ--KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 361 ~~--d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+ +...+++++.++|+|||++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 43 34679999999999999977654
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=3.2e-11 Score=122.41 Aligned_cols=99 Identities=28% Similarity=0.420 Sum_probs=81.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+|||||||+|.++..+++.. ...+++++|+|+.+++.++++ ++ .+.+...|....|++ ++||+|++..+ ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 69999999999999998864 335799999999999888764 33 345666677666665 48999999988 55
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..+...+++++.++|||||++++.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6677889999999999999999998874
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=139.84 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=84.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP--fpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++. .+...++|+|+|+.|++.|+++ +.+..+.++|+..+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999999888875 3557899999999999988765 345566777888888 888999999999874
Q ss_pred cccc------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 358 VDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++. .+...+|+++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4332 24468999999999999999998853
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.24 E-value=7.2e-11 Score=118.50 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
...+|||+|||+|.++..+++.......++++|+++.+++.++++. ..+.+...++..+++++++||+|++..+ ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-LR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-eC
Confidence 3479999999999999999887533257999999999999888764 2456777888888888889999999887 66
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..++..+++++.++|+|||++++.+..
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6778889999999999999999987753
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.23 E-value=4.4e-11 Score=126.35 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEe
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~ 335 (697)
...+.+.+.+.+.++ .+|||||||.|.++.+++++. .++|+++.+|+++.+.++++ |+. +.+..
T Consensus 49 ~k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 334444444454444 899999999999999999982 35699999999999888654 543 55666
Q ss_pred ecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 336 FASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|..+++. +||.|++..++.|.. .+...+++++.++|||||.+++.....
T Consensus 119 ~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 119 QDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp S-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred eeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 67666543 999999999966664 455789999999999999999876644
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.22 E-value=6.7e-11 Score=130.58 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+.+|||||||+|.++..++++. ...|+++|+|++|++.|+++. +.+.+...+...+ +++||+|++..++.|..
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCC
Confidence 3799999999999999998762 347999999999999998763 4455555565544 46899999998844432
Q ss_pred -ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 362 -QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 362 -~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+...+++++.++|||||++++.+...
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 334689999999999999999987643
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=117.49 Aligned_cols=104 Identities=25% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|.++..+++.+....+++++|.++.+++.++++. .++.+...+...+++++++||+|++..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~- 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG- 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc-
Confidence 478999999999999999887532468999999999999887752 2456777788888888889999999887
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++..+|.++.++|+|||.+++.+...
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 6667788899999999999999999877543
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=5e-11 Score=118.75 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=84.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
++.+|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++.-..++..--.|++++||.|+++.+ ++...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-LQ~~~ 89 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-LQAVR 89 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-HHhHh
Confidence 3489999999999999999886 35678999999999999999999987776664323499999999999998 77778
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+.+|.|+.|+ |...+++.|+.
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCh
Confidence 899999999887 55778887764
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=4.8e-11 Score=120.37 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=82.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecc-cCCC--CCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da-~~LP--fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ +. ++.+.+.++ +.++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4789999999999999998763 446799999999999988753 33 466777887 7776 7788999999986
Q ss_pred ccccccc--------cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 356 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~--------d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ..|.. ....+++++.++|||||+|+++....
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 5 34322 13578999999999999999987643
No 51
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.19 E-value=2.6e-11 Score=125.02 Aligned_cols=100 Identities=23% Similarity=0.308 Sum_probs=81.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---------cEEEeecccCCCCCCCCccEEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---------AMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---------~~~~~~da~~LPfpd~sFDlV~ 352 (697)
+++|||+|||+|.++..|++.| ..|+|+|.++.|++.|+++.- | ..+.+.+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4789999999999999999986 569999999999999987621 1 11233333333 24599999
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|+.+ ++|..|+..++..+.++|||||.+++++.+...
T Consensus 164 csev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999 777889999999999999999999999986544
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=116.23 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|.++..|++. .....+++++|+|+.|++.|+++. .++.+...++..+++++++||+|+|+.+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~- 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF- 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe-
Confidence 4579999999999998888753 112357999999999999998763 2345556677778888889999999998
Q ss_pred ccccccH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+.+++ ..+|+++.|+++ |.+++.+...
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 6666554 469999999998 6667766544
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.14 E-value=3.5e-10 Score=113.13 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+++||+|||.|.++..|+.+ .-.++++|.|+..++.|++|- ..+.+.+++.... .|+++||+|+++.+++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 3478999999999999999988 467999999999999999873 3466777765443 57889999999999665
Q ss_pred ccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 360 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.+ +...++..+...|+|||.|++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 543 235789999999999999999876
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.13 E-value=3.7e-10 Score=113.36 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.++||+|||.|..+.+|+++|+ .|+++|.|+..++.+ .+.++++...+.|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 47999999999999999999985 489999999888644 45688888888888877776 58999999866444
Q ss_pred cccc-HHHHHHHHHHhccCCeEEEEEeC
Q 005417 360 WDQK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..++ ...++..+...++|||++++...
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 3332 35789999999999999998654
No 55
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.13 E-value=5.1e-10 Score=114.23 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-C
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~LPfp-d 345 (697)
..+|||+|||.|..+.+|+++|. .|+|+|+|+.+++.+. +.++ .+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 36999999999999999999975 5899999999998753 3332 455677787777643 4
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005417 346 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.||.|+-..+++|..++. ..++..+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799999887755554333 5699999999999998666644
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=3.4e-10 Score=115.04 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..++++......|+++|+++ |. ...++.+.++|+...+ +.+++||+|+|..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 47899999999999999988754446799999987 21 1234667777877753 6678999999986
Q ss_pred ccccccccH-----------HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 356 CGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d~-----------~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ .++..++ ..+|.++.++|||||.|++..+..
T Consensus 126 ~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 A-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred C-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 5 4443321 358999999999999999987643
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=1.1e-09 Score=99.77 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++++. ....++++|.++.+++.+++. +. ++.+...+... ++...++||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3689999999999999998863 236799999999999887643 22 34555555443 3333468999999765
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+ ....+++++.++|||||+|++...
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 235899999999999999998753
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=3.8e-10 Score=118.92 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=94.7
Q ss_pred ccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005417 249 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 249 ~F~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
.|....... +......+.+.+.+.+.+| .+|||||||-|.++.+++++. .+.|+|+++|++|.+.++++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHH
Confidence 344443333 3335556677777777766 999999999999999999983 46799999999999887663
Q ss_pred ----CCC--cEEEeecccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 328 ----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 328 ----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
|++ +.+...| .+...+.||-|++...+.|... +...+++.++++|+|||.+++.+.+..
T Consensus 115 ~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 115 IAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred HHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 655 3443333 3433456999999999666553 357899999999999999999876553
No 59
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.10 E-value=5e-10 Score=112.87 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeec-ccC
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA-SKQ 340 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d-a~~ 340 (697)
...+...+++.+..+ ...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++-+...+...| .+.
T Consensus 35 em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~G 105 (270)
T KOG1541|consen 35 EMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEG 105 (270)
T ss_pred HHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC
Confidence 333444455544332 46789999999999999998886 45899999999999999876654443333 377
Q ss_pred CCCCCCCccEEEecccccccc-------ccHH----HHHHHHHHhccCCeEEEEEeCCCC
Q 005417 341 LPYPSLSFDMLHCARCGVDWD-------QKDG----ILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 341 LPfpd~sFDlV~~~~~llh~~-------~d~~----~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+||..++||.|++..+ ++|. .++. .++..++.+|++|+..++...+.+
T Consensus 106 lpfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999999876 6765 2222 467789999999999999877544
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.09 E-value=9.7e-10 Score=109.35 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+.+|||||||+|.++..++... ....++++|.++.|++.+++ .++ ++.+.++++..++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 4799999999999999887653 34679999999999876653 344 46777788877643 57999999864 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+...+++.+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3455788999999999999998754
No 61
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.07 E-value=2.1e-09 Score=105.45 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++++ ....++++|+++.+++.+++. ++. +.+...|... +.++++||+|+|+-- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 3789999999999999999885 445699999999999888653 454 5555555432 344689999999965 4
Q ss_pred ccccc-----HHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 DWDQK-----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d-----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+...+ ...++.+..+.|||||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 43332 35789999999999999977554
No 62
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=7.5e-09 Score=118.29 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++ .+.+...|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999999888652 346799999999999988764 33 24455555432 2345689999996421
Q ss_pred ccc---------------------ccc----HHHHHHHHHHhccCCeEEEEEe
Q 005417 358 VDW---------------------DQK----DGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~---------------------~~d----~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+.. ..+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 110 011 1246778899999999999864
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.07 E-value=1.2e-09 Score=110.99 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.+ ..++|+|++++|++.|+++. . ++.+.+.+...++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35899999999999999998874 46899999999999887652 2 4567777777665 78999999988
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEE
Q 005417 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis 384 (697)
++|+. ++...++.++.+++++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 55554 23467899999999988776664
No 64
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.06 E-value=2.5e-10 Score=116.60 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=83.0
Q ss_pred ccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC
Q 005417 251 RSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 329 (697)
Q Consensus 251 ~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl 329 (697)
...+..| +....|....-+.+..... ..+.++|||||+|..+..++++ .-+|+++|+|++|++.|++.-.
T Consensus 6 ~~~a~~Y~~ARP~YPtdw~~~ia~~~~------~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 6 DKQAADYLNARPSYPTDWFKKIASRTE------GHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred cccHHHHhhcCCCCcHHHHHHHHhhCC------CcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCC
Confidence 3344445 2334454444444433332 3458999999999777777766 3568999999999999987532
Q ss_pred C------cEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCe-EEEEEeC
Q 005417 330 P------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSP 386 (697)
Q Consensus 330 ~------~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG-~Lvis~p 386 (697)
. ......+...|--.++|.|+|+|..| +||.+ .+.++++++|+||+.| .+++=..
T Consensus 77 ~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 77 VTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWFD-LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred cccccCCccccccccccccCCCcceeeehhhhh-HHhhc-hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 1 11222222233334899999999999 99984 5689999999999866 6665433
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=4.8e-10 Score=112.33 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC---CCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP---fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..++++. +...++++|.++.+++.|+++ ++ ++.+..+++..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887643 33 5667777876654 5667999999886
Q ss_pred ccccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005417 356 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. .+|.... ..++.++.++|||||.|++.+..
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5 4554321 46899999999999999998764
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.05 E-value=3.4e-09 Score=104.40 Aligned_cols=99 Identities=19% Similarity=0.168 Sum_probs=76.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..+++.+. +++++|.++.+++.++++ +..+.+...|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998753 799999999999888764 445566666654443 4589999999763332
Q ss_pred ccc--------------------HHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 361 DQK--------------------DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~~d--------------------~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+. ...++.++.++|||||.+++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 211 2457999999999999999987644
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.8e-09 Score=109.12 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|..+..+++.......++++|.++++++.|+++ +.. +.+..+|........++||+|++..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 37999999999999998887522234799999999999888753 332 56677777665445679999999877
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.++ +..++.++|+|||+|++..
T Consensus 152 ~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 AST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cch------hhHHHHHhcCcCcEEEEEE
Confidence 332 2357889999999998864
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.02 E-value=1.9e-09 Score=110.24 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=82.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC-CCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
...+|||||||+|.++..+++.+ ..++++|+++.+++.++++ +..+.+...+...++ ..+++||+|++..+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 34789999999999999998874 4589999999999888764 344556656665554 34579999999988
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.++|+|||.++++.+..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6666788899999999999999999987753
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.02 E-value=1.5e-09 Score=108.34 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-C-CCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-L-Pfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.. ...++++|+++++++.++++++. +.++++.. + ++++++||+|+|+.+ +++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT-LQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-hHcC
Confidence 3689999999999999987653 34578999999999999877654 44456544 4 477889999999988 6778
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..+|+++.|++++ ++++.+.
T Consensus 89 ~d~~~~l~e~~r~~~~---~ii~~p~ 111 (194)
T TIGR02081 89 RNPEEILDEMLRVGRH---AIVSFPN 111 (194)
T ss_pred cCHHHHHHHHHHhCCe---EEEEcCC
Confidence 8899999999887664 4555543
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.01 E-value=2.9e-09 Score=116.00 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=76.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..++++. ....++++|+++.+++.|++ .++...+...|... ..++.||+|+|+.. +|.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-ccC
Confidence 589999999999999999874 34579999999999988864 24555555545432 23578999999987 554
Q ss_pred c-----ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 361 D-----QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~-----~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ...+.++.++.+.|||||.|++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2236799999999999999998764
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.01 E-value=2.5e-09 Score=113.76 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=73.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H-
Confidence 47999999999999998887753 4799999999999988764 33322221122123445679999999854 2
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.....++.++.++|||||+++++....
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 223578999999999999999998753
No 72
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.00 E-value=9.8e-11 Score=118.52 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-CCC-CCCCCccEEEeccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-YPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~LP-fpd~sFDlV~~~~~llh~ 360 (697)
..+++||+|||||.++..|... ...++|+|+|++|++.|.++++--...++++. .++ ..++.||+|++..+ +.+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHh
Confidence 3689999999999999998766 45589999999999999999876555555544 233 55678999999998 666
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
..+.+.++.-....|+|||.|.||.-..
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 6778889999999999999999997543
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=2.6e-09 Score=108.62 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
.....+.+.+...++ .+|||||||+|.++..+++......+++++|.++.+++.|+++ +. ++.+..+
T Consensus 63 ~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 63 HMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred HHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 334445555544443 8999999999999999887632345799999999999988764 33 4677778
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|+.....+.+.||+|++... .+ .....+.+.|||||.+++..
T Consensus 135 d~~~~~~~~~~fD~I~~~~~-~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAA-GP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcCCCcCEEEECCC-cc------cchHHHHHhhCCCcEEEEEE
Confidence 87766666789999998865 22 12346777999999999854
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.00 E-value=2.4e-09 Score=108.43 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=83.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC-CCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp-d~sFDlV~~~~~ 356 (697)
...+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...+...++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35789999999999999998764 3489999999999888764 34 466666777666654 378999999987
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++..+|.++.++|+|||.+++++...
T Consensus 122 -l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 122 -LEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -HHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6777888899999999999999999987654
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.99 E-value=2.8e-09 Score=108.38 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ ++.+..+|........++||+|++..+ .
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~-~ 156 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA-G 156 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-c
Confidence 47999999999999999988743345699999999999888754 33 456677776655444568999998765 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. .+...+.+.|+|||++++..
T Consensus 157 ~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 157 P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred c------cccHHHHHhcCcCcEEEEEE
Confidence 2 23456889999999999864
No 76
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.99 E-value=2.4e-09 Score=113.37 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH--HHHc--CCCc--EEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER--GLPA--MIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~--A~er--gl~~--~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|||||||.|.++..|+.+|. ..|+|+|++.-..-. +.++ +... .......+.+|. .++||+|+|.++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 458999999999999999999873 468999999765422 1122 2222 223357788888 789999999999
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++| ..+|-..|.+++..|+|||.+++.+...
T Consensus 192 LYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 192 LYH-RRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hhc-cCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 555 5788899999999999999999987643
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=5e-09 Score=111.50 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHh-hcCCceeEEEEecCCHHHHHHHHHcC-----C--CcEEEeecccCCCCCCCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLERG-----L--PAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La-~~g~~~~sV~gvD~S~~ml~~A~erg-----l--~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
.+++|+|||||.|.++..++ ....+...++++|.++++++.|++.. + .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 46899999999886655443 33345678999999999999887532 2 3677888877664345789999999
Q ss_pred ccccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 355 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 355 ~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++++|. ++...+|..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 757774 677899999999999999999986
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=6.9e-09 Score=106.31 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-C
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~LPfp-d 345 (697)
..+|||+|||.|..+..|+++|+ .|+|+|+|+.+++.+. ++++ .+.+.++|...++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999875 5899999999998763 4443 245566777776533 2
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEE
Q 005417 346 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
..||+|+-..++++..++. ..++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999887755544333 57999999999999975543
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=7.3e-09 Score=114.05 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|||+|||+|.++..+++++ +..+|+++|.|+.+++.|++. +. .+.+...+... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 689999999999999999874 457899999999999988754 22 23444444322 234568999999866
Q ss_pred cccccc-----cHHHHHHHHHHhccCCeEEEEEe
Q 005417 357 GVDWDQ-----KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~-----d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+|... ...+++.++.++|+|||.|++..
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 12578999999999999999985
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.94 E-value=1.2e-08 Score=101.37 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ...+++++|.++.+++.|+++ ++ .+.+...+.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 4789999999999999998874 446799999999999888653 32 3445555542 3343 58999998765 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.....++.++.++|+|||++++....
T Consensus 108 ---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 108 ---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 23457899999999999999997653
No 81
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.92 E-value=8.1e-09 Score=110.37 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+...|....++++ +|+|++.++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 34799999999999999999884 4567899997 6788777543 44 3556677776666654 799999888
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 357 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|.++. ..+|++++++|||||++++.+...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 55555433 579999999999999999998643
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.92 E-value=4.6e-09 Score=109.34 Aligned_cols=94 Identities=23% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||||||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+ .++..+.+||+|+|+.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~-~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANIL-A 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCc-H
Confidence 347999999999999988887753 3599999999999988764 221111 12222237999998754 1
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.....++.++.++|||||++++++...
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 223578999999999999999998753
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=3e-09 Score=103.59 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=66.4
Q ss_pred EEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEE
Q 005417 312 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 312 ~gvD~S~~ml~~A~erg--------l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
+|+|+|+.|++.|+++. .++.+.++|++++|+++++||+|++.++ +++.+++..+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999996542 2467888999999999999999999988 67778899999999999999999999
Q ss_pred EeCCC
Q 005417 384 TSPLT 388 (697)
Q Consensus 384 s~p~~ 388 (697)
.+...
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 98754
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.92 E-value=6.5e-09 Score=114.37 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC--CCCCCCccEEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L--Pfpd~sFDlV~~~~~ 356 (697)
...+||||||+|.++..++.+. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4689999999999999999884 557899999999998776543 44 456777787654 578899999998876
Q ss_pred cccccccH------HHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~------~~~L~El~RvLKPGG~Lvis~p 386 (697)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5664332 4799999999999999999764
No 85
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.89 E-value=4.2e-09 Score=95.60 Aligned_cols=100 Identities=25% Similarity=0.400 Sum_probs=77.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCccEEEeccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.++.+ +. ++.+.+.|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999886 57899999999999988764 22 4677888877765 78899999999865
Q ss_pred cccccc-------cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~-------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332211 124689999999999999998765
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=106.27 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=96.9
Q ss_pred ccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCC-ceeEEEEecCCHHHHHHHHHcC-----
Q 005417 255 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERG----- 328 (697)
Q Consensus 255 ~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~-~~~sV~gvD~S~~ml~~A~erg----- 328 (697)
.+|....-....+-+++..... ...+||+||||.|.....+++... ....+.+.|.|+.+++..+++.
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~ 122 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES 122 (264)
T ss_pred cccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh
Confidence 3444444455566666654433 233899999999999988887531 2267999999999999887653
Q ss_pred -CCcEEEeecccC--CCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCCChhhhhhh
Q 005417 329 -LPAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 396 (697)
Q Consensus 329 -l~~~~~~~da~~--LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~ 396 (697)
..+.+..++... -|.+.+++|.|++++++....++. ..++.++.++|||||.+++.|.+......+|.
T Consensus 123 ~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred hhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 122233333333 356788999999999966655444 57999999999999999999998877665544
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.89 E-value=1.4e-08 Score=108.77 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccC-CCCCCCC---cc-EEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS---FD-MLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~-LPfpd~s---FD-lV~ 352 (697)
..+|||+|||+|..+..|++......+++++|+|++|++.++++ ++++...++|+.. ++++... .+ +++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999999988743246799999999999888764 2344556777765 4444332 23 333
Q ss_pred ecccccccccc--HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 353 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+..+ +++.+. ...+|++++++|+|||.|+|......
T Consensus 144 ~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 144 PGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred eccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3334 444432 35699999999999999998765543
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.1e-08 Score=87.42 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=74.9
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCcEEEeecccCCCC-CCCCccEEEecccccc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 359 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~~~~~~da~~LPf-pd~sFDlV~~~~~llh 359 (697)
+|||+|||+|.++..+++. ...+++++|.++.+++.+++. . ....+...+...... ..++||+|++..+ ++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-ee
Confidence 4899999999999999873 356799999999999887721 1 234455556555543 5578999999988 55
Q ss_pred c-cccHHHHHHHHHHhccCCeEEEEE
Q 005417 360 W-DQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 360 ~-~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
+ ......+++.+.+.|+|||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 566678999999999999999986
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.89 E-value=2.3e-08 Score=107.83 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCCCCCCCCccEEEe
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
+.+|||||||+|.++..+++.+ ..|+++|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4799999999999999999875 46999999999999988762 1234555554433 578999999
Q ss_pred ccccccccccH-HHHHHHHHHhccCCeEEE
Q 005417 354 ARCGVDWDQKD-GILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 354 ~~~llh~~~d~-~~~L~El~RvLKPGG~Lv 382 (697)
..+++|+.++. ..++..+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99966654333 245666654 45665544
No 90
>PRK04266 fibrillarin; Provisional
Probab=98.88 E-value=1e-08 Score=105.63 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccC----CCCCCCCccEEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQ----LPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~----LPfpd~sFDlV~~~~~ 356 (697)
+.+|||+|||+|.++..+++... ...|+++|.++.|++.+.++ ..++.+..+|+.. .+++ ++||+|++...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA 150 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC
Confidence 47999999999999999988632 34799999999988755332 1245555566543 1233 46999996533
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ......++.++.|+|||||.++++.+
T Consensus 151 -~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 151 -Q--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred -C--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 11124578999999999999999643
No 91
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.87 E-value=1.7e-08 Score=102.51 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..|++.+ ..++++|+|+.|++.|+++ +. .+.+..++ ++..+++||+|+|..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34789999999999999999875 3499999999999998765 22 34455555 4555689999999988
Q ss_pred cccccc-cHHHHHHHHHHhccCCeEEE
Q 005417 357 GVDWDQ-KDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~~-d~~~~L~El~RvLKPGG~Lv 382 (697)
++|+.. +...+++++.+.+++++.+.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 555442 33568888888776544433
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=2e-08 Score=100.86 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
...+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...+... ++..++.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 347999999999999998876522345799999999999887654 32 34555566654 333346899999864
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 3 24567899999999999999998655
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=98.87 E-value=2e-08 Score=102.63 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=74.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.+ ...++++|.++.+++.++++ ++.+.+...|... .+++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4799999999999999998864 24789999999999877653 4555566666544 356679999999843221
Q ss_pred ccc--------------------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 360 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~--------------------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
... ....++.++.++|||||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0245788899999999999986553
No 94
>PTZ00146 fibrillarin; Provisional
Probab=98.86 E-value=3e-08 Score=105.34 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=81.6
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCcE
Q 005417 257 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAM 332 (697)
Q Consensus 257 yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~ 332 (697)
|..-+.|...++..+..... .+.-.+..+|||+|||+|.++.++++..-..-.|+++|+++.| ++.++++ .++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~ 184 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIV 184 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCE
Confidence 43334455555555432222 1112345799999999999999999873334579999999864 4555443 3455
Q ss_pred EEeecccC---CCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 333 IGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 333 ~~~~da~~---LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....|+.. +....++||+|++... . .++...++.++.++|||||+|+|...
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 55556542 2223458999998864 2 23344677799999999999999543
No 95
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.7e-08 Score=105.50 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=91.9
Q ss_pred ccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005417 249 SFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 249 ~F~~~~~~y--d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
.|......| +..+.-.+.+.+.+..... .+|||+|||.|.++..+++.. +...++.+|.+...++.|++
T Consensus 130 ~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~ 200 (300)
T COG2813 130 TFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARK 200 (300)
T ss_pred EEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHH
Confidence 455555555 4445555667777665444 489999999999999999985 46789999999999998875
Q ss_pred c----CCCcEEEeecccCCCCCCCCccEEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeC
Q 005417 327 R----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 327 r----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ++....+..+....+.++ +||+|+|+-- +|-..+. .+++.+..+.|++||.|.|..-
T Consensus 201 Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 201 NLAANGVENTEVWASNLYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred hHHHcCCCccEEEEecccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4 344422223334455555 9999999977 4433222 3789999999999999999875
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2e-08 Score=106.92 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCC-CCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd-~sFDlV~~~~~l 357 (697)
++.+|||+|||+|.++...++.| ...+.|+|+++-.++.|++. +++..........+..+. +.||+|+|+-.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 45899999999999999999987 34689999999999888764 344211111111222333 599999999541
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+-...+..++.+.|||||++++|....
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 113578999999999999999999753
No 97
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.83 E-value=4e-08 Score=106.37 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccc-
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG- 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~l- 357 (697)
+.+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+...|+.++|+++++||+|+++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 4789999999999988876654 4689999999999877643 433 467788999999988899999996321
Q ss_pred ----ccc--c-ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 358 ----VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 ----lh~--~-~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
... . .....++.++.++|||||++++..+.
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 010 1 11357999999999999999998874
No 98
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.83 E-value=5e-10 Score=111.78 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=126.7
Q ss_pred chhhhccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 005417 244 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 323 (697)
Q Consensus 244 d~~~~~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~ 323 (697)
..+...|-+.++||-...+ ++++++..... .+. ..+.++||+|+|.|..+..++.. ..+|.+.+.|..|...
T Consensus 78 ~TdING~lgrGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~r 149 (288)
T KOG3987|consen 78 QTDINGFLGRGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDR 149 (288)
T ss_pred hhccccccccCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHH
Confidence 3444478888888754443 66777765532 222 23478999999999999999876 4568899999999999
Q ss_pred HHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccC-CeEEEEEeCCCChhhhhhhHHhhhh
Q 005417 324 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNPQAFLRNKENQKR 402 (697)
Q Consensus 324 A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKP-GG~Lvis~p~~~~~~~lr~~e~~~~ 402 (697)
.+.++-++.- .....-.+-+||+|.|.+. +..+.++.++|++++.+|+| .|.++++-..+..+.--. .....
T Consensus 150 L~kk~ynVl~----~~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~--N~~g~ 222 (288)
T KOG3987|consen 150 LKKKNYNVLT----EIEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVET--NTSGL 222 (288)
T ss_pred HhhcCCceee----ehhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeec--CCCCC
Confidence 9888755432 2222233457999999987 77778889999999999999 899888765554321100 01123
Q ss_pred hhhhhhhhhccceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccccCcc
Q 005417 403 WNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQP 464 (697)
Q Consensus 403 W~~l~~la~~~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~~L~~ 464 (697)
|.+...+.+..+-.-..+ ..-+.....+..|........|++|+ +|++..+|+-.+.
T Consensus 223 ~~rPdn~Le~~Gr~~ee~---v~~~~e~lr~~g~~veawTrlPYLCE--GDm~ns~Y~L~Da 279 (288)
T KOG3987|consen 223 PLRPDNLLENNGRSFEEE---VARFMELLRNCGYRVEAWTRLPYLCE--GDMHNSFYWLIDA 279 (288)
T ss_pred cCCchHHHHhcCccHHHH---HHHHHHHHHhcCchhhhhhcCCeecc--cccccceEEecce
Confidence 444444443322211100 00000011122233344566799999 8999999985443
No 99
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.81 E-value=2.9e-08 Score=98.74 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
.+.+|||||||+|.++..++++......++++|+++.+ ....+.+.+++..+.+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 34799999999999999988764344569999999865 1224455666665532 456789999986
Q ss_pred cccc---cccc-------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 355 RCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~ll---h~~~-------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+.. +|.. +...++.++.++|+|||++++..+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4311 1111 1257899999999999999997653
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=98.81 E-value=5.8e-08 Score=95.13 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCCCCCCCCccEEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+|||+|||+|.++..+++++ .+++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 4789999999999999999873 5789999999999888643 332 5555555443 345568999998754
Q ss_pred ccccc--------------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 357 GVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~--------------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.. .....+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 22210 11245799999999999999887653
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.79 E-value=5.9e-08 Score=99.73 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++.. ....++++|+++.+++.|++. ++. +.+..++... ++++++||+|+|+....
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999998763 345799999999999888653 443 5666667654 46678999999964311
Q ss_pred c------cccc-------------------HHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h------~~~d-------------------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. +..+ ...++.++.++|+|||.+++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 0000 12578899999999999999753
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.76 E-value=2.7e-08 Score=106.30 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
++.+|||||||+|.++...++.|. ..|+++|+++..++.|++. ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 447999999999999999998874 4689999999999888754 5544443322 22234589999999854 1
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+-...++..+.++|+|||+|++|....
T Consensus 236 ---~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 113468888999999999999998854
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.76 E-value=7.5e-08 Score=97.43 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ..++++|.++.+++.|+++ ++ ++.+...+......+.++||+|++..+ .
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 4799999999999999887763 3689999999999888754 33 355666665433223478999999865 3
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ .+..++.+.|+|||.+++...
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEEc
Confidence 2 234567899999999998765
No 104
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=1e-08 Score=104.01 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=96.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
...++|||||.|....+|..++ +..++-+|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 4679999999999999999886 45688999999999988754 44555678899999999999999999987 999
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhh
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 396 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~ 396 (697)
..+...-+..++..|||+|.|+-+......+.++|-
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 999999999999999999999999888877776654
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=9.3e-08 Score=95.70 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+...++.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4799999999999999987653 346799999999999888753 33 35566566543 222223467765432
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+...++.++.++|+|||++++..+.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234568999999999999999998764
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=8.4e-08 Score=107.55 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCccEEEecc-
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR- 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP--fpd~sFDlV~~~~- 355 (697)
++.+|||+|||+|..+..+++... ...|+++|.++.+++.++++ ++.+.+.+.|+..++ ++.++||.|++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 347999999999999999998742 25799999999999887654 556667777877654 3467899999532
Q ss_pred ---cc-c------ccccc----------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 356 ---CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 356 ---~l-l------h~~~d----------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. + .|... ...+|.++.++|||||++++++-...
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 11 1 11111 13689999999999999999986443
No 107
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.70 E-value=1.7e-07 Score=99.67 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++++. ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999863 346799999999999888754 44 35566666532 3455689999997211
Q ss_pred c------------cccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 V------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 l------------h~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ++.+ ....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 114578899999999999998765
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.67 E-value=1.5e-07 Score=105.37 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEE--EeecccCCCC--CCCCccEEEec-
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHCA- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~~~da~~LPf--pd~sFDlV~~~- 354 (697)
+.+|||+|||+|..+..+++.. ....++++|.++.+++.++++ |+.+.+ ..++....++ ++++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4799999999999999998863 246799999999999877643 555333 4455544443 56789999952
Q ss_pred ---c-cccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 355 ---R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 ---~-~llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. ..++..++ ...+|.++.++|||||++++++-....
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 11222222 246899999999999999999876543
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.66 E-value=9.3e-08 Score=94.26 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||+|||.|.+...|++.+++ ..++|+|.|+..++.|+ .++.+ +.|.++|...-.+..+.||+|+--..
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 3459999999999999999999865 34899999999998775 33554 77888998877788889999985443
Q ss_pred c--cccccc-----HHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 357 G--VDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 l--lh~~~d-----~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +...++ +...+..+.+.|+|||+|+|..-+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1 111111 1347888999999999999987653
No 110
>PRK00811 spermidine synthase; Provisional
Probab=98.66 E-value=2.6e-07 Score=98.20 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccC-CCCCCCCccEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-LPfpd~sFDlV 351 (697)
.+.+||+||||.|..+..++++. ...+|+++|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998762 3457999999999999988641 234555666544 23346789999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005417 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... -++.+. ...+++.+.+.|+|||.+++....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98643 333222 146789999999999999986543
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.66 E-value=1.9e-07 Score=101.02 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.......|+++|.++.+++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 37999999999999999987632223589999999999888753 43 355666776665555578999998754 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .....+.+.|+|||.+++...
T Consensus 160 ~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred H------HhHHHHHHhcCCCCEEEEEeC
Confidence 2 233457789999999988653
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=2.8e-07 Score=94.98 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=80.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCcEEEeecccCCCCC--
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 344 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e-----------------rgl~~~~~~~da~~LPfp-- 344 (697)
..+||+.|||.|.-+.+|+++|+. |+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 479999999999999999999854 8999999999988754 234667888888888642
Q ss_pred -CCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005417 345 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+.||+|+=..++++..++. .+..+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 25899998777756655444 5799999999999999887765
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.7e-07 Score=105.24 Aligned_cols=107 Identities=22% Similarity=0.161 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC----CCCCCccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP----fpd~sFDlV~~ 353 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+..+|+..++ +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 347999999999999999987632345799999999999877643 44 3567777877766 45679999996
Q ss_pred c----c-cccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 354 A----R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 354 ~----~-~llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
. . ..++..++ ...+|.++.++|||||+++.++-...
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 3 1 11222222 24689999999999999999986543
No 114
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.63 E-value=8e-08 Score=104.29 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCcEEEeecccC------C
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ------L 341 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~------L 341 (697)
...+|||+|||.|.-+.-....+ +..++|+|++...++.|++|. ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 45899999999888666665554 567999999999999998774 233445554432 2
Q ss_pred CCCCCCccEEEeccccccccccH---HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 342 PYPSLSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 342 Pfpd~sFDlV~~~~~llh~~~d~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.....||+|-|-+++++..... ..+|..+...|+|||+|+.+.|..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22235999999999955444444 358999999999999999999843
No 115
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.62 E-value=2.3e-07 Score=97.02 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..++... ....++++|+++.+++.|++.. .++.+...|... ++++++||+|+++.-..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4689999999999999998874 3467999999999999887641 245566566532 33457999999964311
Q ss_pred cc------c-------------------ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 359 DW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~------~-------------------~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.. . .....++.++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 0 112457888889999999999954
No 116
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.62 E-value=2.6e-07 Score=93.45 Aligned_cols=142 Identities=21% Similarity=0.336 Sum_probs=93.3
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCcEE--EeecccC--CCC------CCCCccEE
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMI--GSFASKQ--LPY------PSLSFDML 351 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~--~~~da~~--LPf------pd~sFDlV 351 (697)
+|||||||||..+.+++++ ++.....+.|..+..+. ...+.+++... ..+|+.. .|. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999987 45677888898877652 22333332111 1223333 333 25699999
Q ss_pred EeccccccccccH--HHHHHHHHHhccCCeEEEEEeCCCCh-----------hhhhhhHH---hhhhhhhhhhhhhccce
Q 005417 352 HCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP-----------QAFLRNKE---NQKRWNFVRDFVENLCW 415 (697)
Q Consensus 352 ~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~-----------~~~lr~~e---~~~~W~~l~~la~~~~w 415 (697)
+|.++ +|..+-. +.+++.+.++|+|||.|++-.|.... ..+++... ...+.+.+..++.+.++
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99998 7765433 57999999999999999998875421 11222211 12233667788888888
Q ss_pred EEeeec-----CceEEEEe
Q 005417 416 ELVSQQ-----DETVVWKK 429 (697)
Q Consensus 416 ~ll~~~-----~~~~IwqK 429 (697)
++.... +...||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 776542 24566664
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=1.8e-07 Score=91.54 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+...|+..+++++.+||.|+++.- ++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3789999999999999999883 46999999999999987763 2466788899999888878999998854 443
Q ss_pred cccHHHHHHHHHHh--ccCCeEEEEEe
Q 005417 361 DQKDGILLLEVDRV--LKPGGYFVWTS 385 (697)
Q Consensus 361 ~~d~~~~L~El~Rv--LKPGG~Lvis~ 385 (697)
. ...+..+... +.++|.+++..
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 2333333332 45888888864
No 118
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=3.1e-07 Score=103.53 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEe----
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC---- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~---- 353 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+. +.+.+.|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 347999999999999988887522234799999999999877643 543 566777777665 5578999995
Q ss_pred cccc-cc------cccc----------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 354 ARCG-VD------WDQK----------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ~~~l-lh------~~~d----------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+... +. |... ...+|.++.++|||||++++++-....
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2211 10 1111 135899999999999999999876543
No 119
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.58 E-value=6e-07 Score=99.78 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=72.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCC-CCCccEEEecccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfp-d~sFDlV~~~~~llh 359 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.++.+.+.|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999888652 346799999999999988754 45566777776443332 458999999754211
Q ss_pred cc--------------------cc----HHHHHHHHHHhccCCeEEEEEeC
Q 005417 360 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~--------------------~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ++ ...++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 00 01 12567777889999999887654
No 120
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.57 E-value=1.2e-07 Score=96.63 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 335 (697)
......+.+.+.+.++ .+|||||||+|.+++.|+........|+++|..+..++.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4455566666666655 8999999999999999988643445789999999999888765 44 566777
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 336 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|....--....||.|++..+ .. . .-..+.+.||+||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~---~---ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VP---E---IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BS---S-----HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cc---h---HHHHHHHhcCCCcEEEEEEc
Confidence 776544334568999999876 32 1 12346777999999998544
No 121
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.56 E-value=3.8e-07 Score=96.85 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=73.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc-
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l- 357 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999998863 346799999999999888754 343 5666666543 3455589999997211
Q ss_pred -----------ccccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 -----------lh~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11111 224678899999999999998765
No 122
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.55 E-value=3.2e-07 Score=95.39 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~sFDlV~~~~ 355 (697)
..+|||+|||+|..+..++++- ....++++|+.+.+.+.|++. ++ .+.+.+.|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5899999999999999999883 347899999999999998764 11 3456667766654 3445799999985
Q ss_pred cccccc-----------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 356 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~-----------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-.+.-. -+.+..++-..++|||||++.+.-+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 422211 12346788889999999999998764
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=4e-07 Score=102.31 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEEec--
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA-- 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~~~-- 354 (697)
++.+|||+|||+|..+.++++.......|+++|.++.+++.++++ |+. +.+...|+..++ +.+++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 347899999999999999987632345799999999999887644 543 456777877776 556789999963
Q ss_pred --cc-cccccc----------------cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 355 --RC-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 --~~-llh~~~----------------d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.. .+...+ ...++|.++.+.|||||++++++-....
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 11 111111 1135799999999999999999876543
No 124
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.55 E-value=3.9e-07 Score=92.20 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
...|-|+|||.+.++..+.+. ..|.-.|.-.. +..+..+|+.++|.++++.|+|++..++ +..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSL--MGTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhh--hCCC
Confidence 468999999999999776432 34666676431 2235667999999999999999987553 4577
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC
Q 005417 364 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
...++.|..|+|||||.|.|.+..... ..-+.+....+.+++++..+..
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred cHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEeccc
Confidence 889999999999999999999874321 1123344556788999887643
No 125
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=3.8e-07 Score=98.15 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=73.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++ .+.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 689999999999999998763 446799999999999888754 43 35666666533 23456899999973211
Q ss_pred ------------cccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 ------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 ------------h~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++.+ ....++.++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0111 014678999999999999998644
No 126
>PRK04457 spermidine synthase; Provisional
Probab=98.53 E-value=5.3e-07 Score=94.91 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccC-CCCCCCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
.+.+|||||||+|.++..+++.. +..+++++|+++++++.|++.. .++.+..+|+.. +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999998763 4578999999999999998752 234556666533 222236899999863
Q ss_pred cc-ccccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CG-VDWDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~l-lh~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ..... ....+++++.++|+|||.+++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 10 11111 125799999999999999999654
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=98.53 E-value=5e-07 Score=95.31 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||+|||+|.++..++.+. ...+++++|+++.|++.++++...+.+.+.|+..+.. +.+||+|+++....+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3689999999999998887752 2357999999999999998875567777788776653 4689999998774442111
Q ss_pred -------------------HHHHHHHHHHhccCCeEEEEE
Q 005417 364 -------------------DGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 364 -------------------~~~~L~El~RvLKPGG~Lvis 384 (697)
...++.....+|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 134667788999999977665
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.52 E-value=7.1e-07 Score=93.91 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecc--
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR-- 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~-- 355 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+...|+..++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 347899999999999999887632234799999999999877643 44 34566677766665566799999631
Q ss_pred --c-ccc--------ccc--------cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 356 --C-GVD--------WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 356 --~-llh--------~~~--------d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. .+. +.+ ....+|.++.+.|||||+++.++-....
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 011 110 1134899999999999999999865443
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=98.51 E-value=7.2e-07 Score=97.46 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CCCcEEEeecccC-CCCCCCCcc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl~~~~~~~da~~-LPfpd~sFD 349 (697)
.+.+||+||||+|..+..++++. ....|+.+|+++++++.|++. ...+.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45899999999999998888763 456799999999999999861 1244555566554 334456899
Q ss_pred EEEeccccccccc---c--HHHHHHHHHHhccCCeEEEEEeCC
Q 005417 350 MLHCARCGVDWDQ---K--DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 350 lV~~~~~llh~~~---d--~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+|++... -.... . ...+++.+++.|+|||.+++....
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9998742 11110 0 145899999999999999987543
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-06 Score=89.01 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 335 (697)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..+...+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 3344556666666555 899999999999999999873 3789999999999888764 44 566677
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 336 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|...---+...||.|+...+ ..-. | ..+...|||||.+++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaa-a~~v--P----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAA-APEV--P----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeec-cCCC--C----HHHHHhcccCCEEEEEEc
Confidence 775443233478999999876 3222 2 235667999999998544
No 131
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=4.7e-08 Score=84.20 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=59.5
Q ss_pred EecccCchhhhhhhhcc-CCCeEEEEeecCCCCCchhhHhccCccc---ccccccccCCCCCCccccccccCccccccCC
Q 005417 550 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 550 mDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~~~l~~i~~RGlig---~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
||+|||.|-+++.|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.+|.-+.+||+|++..+|...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 79999999999999985 33344443332 3444444433211 2222233444435999999999998865
Q ss_pred CCCCCcchhhhhhcccccCCcEEEE
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
.....++-|+-|+|||||+++|
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 2456899999999999999986
No 132
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.45 E-value=9e-07 Score=91.24 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||+|.|.++..++++. +..+++..|. +..++.+++ ...+.+..+|.. -++|. +|+++..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 45789999999999999999874 5678899998 777888777 556778877876 66766 999999999777764
Q ss_pred cH-HHHHHHHHHhccCC--eEEEEEeCCC
Q 005417 363 KD-GILLLEVDRVLKPG--GYFVWTSPLT 388 (697)
Q Consensus 363 d~-~~~L~El~RvLKPG--G~Lvis~p~~ 388 (697)
+. ..+|+.+++.|+|| |.|+|.+...
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 44 57999999999999 9999998754
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.44 E-value=1.5e-06 Score=97.96 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
+.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 47899999999999999988632345799999999999877653 44 3566677776653 33 68999997521
Q ss_pred -----cccccc------c----------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 357 -----GVDWDQ------K----------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 -----llh~~~------d----------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.+...+ . ...+|.++.++|||||.+++++....
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 011001 0 13479999999999999999876543
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=1.3e-06 Score=92.14 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||+||||+|.++..++++. ...+++.+|+++.+++.|++.. ..+.+...|+.. +....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999999888764 3457999999999999887641 123344444322 122246899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005417 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+... ....+. ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8654 222222 24688999999999999999744
No 135
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.40 E-value=7.3e-07 Score=94.71 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=79.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCcEEEeecc------cCCCCCC
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------l~~~~~~~da------~~LPfpd 345 (697)
.++.++|+|||.|.-+...-+.|+ ..++++|+++..++.|++|. .++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 457899999999998777766664 35899999999999998762 2455665653 2356677
Q ss_pred CCccEEEecccccccc-ccH---HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 346 LSFDMLHCARCGVDWD-QKD---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~-~d~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+||+|-|-+| +|+. ... ..+|+.+.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 67999999999 5543 332 458999999999999999988854
No 136
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.39 E-value=1.5e-06 Score=90.01 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
....|-|+|||-+.++..- ...|...|... ++-.+...|+.++|.+|++.|++++..+ -+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~------~~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE------RHKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc------ccceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 3467999999999987622 12355666532 2344666799999999999999987644 4567
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
+...++.|++|+|||||.++|...-... .+ -..+..-.+.+++.......
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf----~d------v~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRF----SD------VKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhc----cc------HHHHHHHHHHcCCeeeehhh
Confidence 8889999999999999999998874322 11 11134445678887766543
No 137
>PLN02366 spermidine synthase
Probab=98.38 E-value=4e-06 Score=90.38 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-C-CCCCCccEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-P-YPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-P-fpd~sFDlV 351 (697)
++.+||+||||.|..+..++++ .....++.+|+++.+++.|++.. ..+.+...|+... . .+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4689999999999999999887 34567999999999999988742 2355566665322 1 235689999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005417 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++-.. .++.+. ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98643 332221 13689999999999999987654
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.37 E-value=4.4e-06 Score=83.26 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-CCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-PYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-Pfpd~sFDlV~~~~~ 356 (697)
+..+++|||||+|+.+..++.. .+...++++|-++++++..++. ++ ++.+..+++-.. +-.+ +||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC
Confidence 4589999999999999999843 4667899999999998765432 43 344555554332 2222 7999998876
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
...+.+|..+...|||||.+++.....
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 346689999999999999999987643
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.37 E-value=2.9e-06 Score=97.57 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCcEEEeecccC-CCCCCCCcc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQ-LPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~-LPfpd~sFD 349 (697)
++++|||||||+|..+..++++. ...+++.+|+++++++.+++.. ..+.+...|+.. +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45799999999999999998763 2368999999999999998721 234556666554 223346899
Q ss_pred EEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|++... ....+.. ..+++.+.+.|||||.+++....+
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 9999754 3322221 358899999999999999976433
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.36 E-value=2.1e-06 Score=88.86 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC--ceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~--~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|++....+.+...|....++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 46999999999999998876421 2457999999999999999776567777778766655 46899999985422111
Q ss_pred -c---------c-HHHHHHHHHHhccCCeE
Q 005417 362 -Q---------K-DGILLLEVDRVLKPGGY 380 (697)
Q Consensus 362 -~---------d-~~~~L~El~RvLKPGG~ 380 (697)
. . ...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 1 23578888887777776
No 141
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.36 E-value=1e-06 Score=89.77 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEeecccCCCCCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...++||.|||.|..|..++-.- .-.|..+|+.+..++.|++.-.. ..+.+...+.+..+.++||+|++--|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46799999999999999886653 45689999999999999854222 334555666665556799999999997
Q ss_pred ccccccH-HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHh---hhhhhhhhhhhhccceEEeeec
Q 005417 358 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 358 lh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~---~~~W~~l~~la~~~~w~ll~~~ 421 (697)
.|..++. -.+|+.+...|+|||.+++-+.........-+.+. ...-+.+..+.+..+.+++.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 7766433 57999999999999999997755433211112211 1223456666777777777654
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.6e-06 Score=87.55 Aligned_cols=100 Identities=29% Similarity=0.426 Sum_probs=73.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccC-CC--CCCCCccEEEeccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~-LP--fpd~sFDlV~~~~~ 356 (697)
..+||||||.|.++..+|... +...+.|+|+....+..+.+ .++ ++.+.++|+.. ++ ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 379999999999999999875 56789999999988866643 355 56677777766 32 56789999998876
Q ss_pred cccccccH--------HHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.|.... ..+|.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5554221 3699999999999999999764
No 143
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.34 E-value=2.7e-06 Score=89.02 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccC-CCC-CCCCccEEEeccccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~-LPf-pd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..+++.. ....++++|.++.+++.|++.- ....+.+.|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999988752 3357899999999999887541 123556566543 221 13579999998532210
Q ss_pred ------c---------------cc----HHHHHHHHHHhccCCeEEEEEeC
Q 005417 361 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ------~---------------~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .+ ...++..+.++|||||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999998765
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.33 E-value=3.8e-06 Score=87.03 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-----CCCCCccEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-----fpd~sFDlV 351 (697)
.++|||||||+|..+..++..-.....++++|.++++++.|++. ++ .+.+..+++... + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 47999999999998888876532345799999999999888754 44 345555665432 1 124689999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++-.- .+....++.++.++|||||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87532 23345789999999999999887653
No 145
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=89.76 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=81.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCC-CcEEEeecccCCC---CCCCCccEEEeccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl-~~~~~~~da~~LP---fpd~sFDlV~~~~~ 356 (697)
..+||||||.|.+...+|++. +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 456899999998776554 45688 8888888876543 45669999999987
Q ss_pred cccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005417 357 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-.|.... ..+|+.+.++|+|||.|.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6776333 36899999999999999997643
No 146
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.28 E-value=3.9e-06 Score=86.21 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-cCC----------------CcEEEeecccCCCCCC-
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGL----------------PAMIGSFASKQLPYPS- 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e-rgl----------------~~~~~~~da~~LPfpd- 345 (697)
..+||..|||.|.-...|+++| ..|+|+|+|+..++.+.+ ++. .+.+.++|.-.++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3689999999999999999997 468999999999998843 332 2345566766665433
Q ss_pred CCccEEEecccccccccc-HHHHHHHHHHhccCCeEEEEE
Q 005417 346 LSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d-~~~~L~El~RvLKPGG~Lvis 384 (697)
++||+|+=..++....++ ..+..+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 479999976654444433 467999999999999994443
No 147
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.28 E-value=4.9e-06 Score=84.16 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCch----HHHHHhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 005417 283 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 329 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~--~--g~~~~sV~gvD~S~~ml~~A~er--------gl----------------- 329 (697)
..-+|+-.||++|. ++..|.+ . ......|.|+|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999995 3444444 1 12257899999999999999742 11
Q ss_pred --------CcEEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEe
Q 005417 330 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 --------~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.|...+....+.+.+.||+|+|-++++++.+.. .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13455556555334557899999999977766443 579999999999999999964
No 148
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.27 E-value=8.9e-06 Score=71.56 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=71.9
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---cEEEeecccC--CCCCC-CCccEEEeccccc
Q 005417 287 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 358 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---~~~~~~da~~--LPfpd-~sFDlV~~~~~ll 358 (697)
++|+|||+|... .+.........++++|.+..++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333321111357789999999987554431 1 3455556554 78877 589999 666646
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6555 67899999999999999999887654
No 149
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.2e-05 Score=83.57 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=85.2
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 005417 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 339 (697)
Q Consensus 266 ~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 339 (697)
.|...+.+.++ .+|||.|.|+|.++.+|+..-....+++.+|..++..+.|++. ++ .+.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45555555555 8999999999999999996544557899999999999999865 22 2455556666
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 340 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 340 ~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
..-+++ .||+|+.- .++|-.++..++.+|||||.+++-.|+.+
T Consensus 157 ~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 157 EGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 665655 89999854 26788999999999999999999888653
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.20 E-value=1e-05 Score=91.26 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..+++.+ ..++++|.|+.|++.|++. ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4799999999999999999874 5799999999999888753 33 46677777643 34556789999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
--.. . ....+..+.+ ++|++.++++..
T Consensus 375 PPr~---g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 375 PPRA---G-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCc---C-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 4311 1 2345555555 699999999874
No 151
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.16 E-value=1e-05 Score=83.73 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcE-EEeecccCCC-----CCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQLP-----YPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~-~~~~da~~LP-----fpd~sFDlV~~~~~ 356 (697)
...+|||+|||||.|+..+++.| ...++++|.++.|+.........+. +...+...+. ..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 45789999999999999999986 3569999999998876554443332 2222333222 12236777776644
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..|..+.+.|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 358889999999 7776654
No 152
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=9.5e-06 Score=86.33 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=68.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+|||||||+|..+..++... ....|+++|+|+..++.|++. ++ ..+......-+.--.++||+|+|+--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 79999999999999999885 446899999999999888654 43 2222222211221224899999985322211
Q ss_pred -----c-----cH--------------HHHHHHHHHhccCCeEEEEEeC
Q 005417 362 -----Q-----KD--------------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 -----~-----d~--------------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ +| ..++.++.+.|+|||.+++..-
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 0 11 2568889999999999998654
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=5.4e-06 Score=98.60 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-CCCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-Pfpd~sFDlV~~~~ 355 (697)
+.+|||+|||+|.++..++..|. .+|+++|.|+.+++.|++. ++ .+.+..+|+... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999998753 3699999999999988754 33 356666675432 11146899999964
Q ss_pred ccccc----------cccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CGVDW----------DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~----------~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.+.- ..+...++..+.++|+|||.++++.-
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 31111 12234678889999999999988754
No 154
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.12 E-value=2e-05 Score=84.18 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCch----HHHHHhhcC---CceeEEEEecCCHHHHHHHHHc--------CC-------------------
Q 005417 284 VRTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL------------------- 329 (697)
Q Consensus 284 ~~~VLDIGCGtG~----~a~~La~~g---~~~~sV~gvD~S~~ml~~A~er--------gl------------------- 329 (697)
.-+|+..||.||. ++..+.+.. .....|+|+|+|+.+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999996 344444421 1146799999999999988752 11
Q ss_pred ---------CcEEEeecccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHHhccCCeEEEEEe
Q 005417 330 ---------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 ---------~~~~~~~da~~LPfp-d~sFDlV~~~~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.|...+....+++ .+.||+|+|.++++++.+. ..+++..+++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 112444455444443 5789999999997776533 3679999999999999988854
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=1e-05 Score=83.28 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------C-----------------------
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------P----------------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~----------------------- 330 (697)
.+..+|||||-.|.++..+++. +....+.|+|+++..++.|++..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999987 334569999999999999986420 0
Q ss_pred --------cE-----EEeecccCCCCCCCCccEEEeccc----cccccccH-HHHHHHHHHhccCCeEEEEE
Q 005417 331 --------AM-----IGSFASKQLPYPSLSFDMLHCARC----GVDWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 331 --------~~-----~~~~da~~LPfpd~sFDlV~~~~~----llh~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
+. ++.-..+-+.+....||+|+|..+ -+.|.++. ..++..+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 000001112234567999999754 23344443 57999999999999999984
No 156
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.07 E-value=1.3e-05 Score=89.39 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCCC----CCCCCccEEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP----YPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~LP----fpd~sFDlV~ 352 (697)
+.+|||+|||+|.++..++..+ ..+|+++|.++.+++.|++. ++ .+.+..+|+...- -..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999988766554 34799999999999888753 44 3456667765431 1356899999
Q ss_pred ecccccccc--------ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 353 CARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~--------~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.--.+.-. .+...++....++|+|||.++...-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 884422111 1123455567899999999997653
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.07 E-value=1.2e-05 Score=85.13 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+|||||||+|.++..+++++. .++++|+++.|++.++++. .++.+..+|+..+++++-.+|.|+++--
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 37899999999999999999852 6899999999999988753 3567788888888876533688888744
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.06 E-value=3e-05 Score=83.71 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC-CCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPf-pd~sFDlV~~~~~l 357 (697)
+.+|||+|||+|.++..+++.+ ..|+++|.++.+++.|++. ++ ++.+.++|+..+.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3789999999999999999874 4699999999999887643 44 46777788766542 34579999987431
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. .....+.++...++|++.++++.-..
T Consensus 251 ---~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 ---R-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred ---C-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 1 11223334445578888888876543
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.05 E-value=3e-05 Score=75.92 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-----CCCCCccEEEecccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP-----fpd~sFDlV~~~~~l 357 (697)
.+.-|||+|.|||.+|..++++|+...++++++.+++.+....++...+.+..+|+..+. +.+..||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 346899999999999999999999999999999999999988888777767777776664 677889999998665
Q ss_pred ccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 358 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.+.... -++|+++...|.+||.++--...+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 5544333 468999999999999999776654
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.99 E-value=2.3e-06 Score=81.14 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=63.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccC
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
-.+|||+|||.|.|+..|.+ .+. .|+-+|.. ..+.. +-.....++-.++.. -+++||+|.|..+|.+..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~--~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK--RGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-PDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH--TTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-HSSSEEEEEEESSGGGSS-
T ss_pred CCEEEEEcCCCCHHHHHHHH--hCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-cccchhhHhhHHHHhhcc-
Confidence 45999999999999999976 333 44444443 22222 222222221112211 238999999999998764
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005417 625 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 -----d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 -----DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3668999999999999999998653
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.97 E-value=2.8e-05 Score=81.55 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 338 (697)
...+.+.+.+.... ..+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+..+|+
T Consensus 16 ~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~ 84 (258)
T PRK14896 16 RVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEecc
Confidence 44455555554333 3789999999999999999884 46899999999999987653 2466778888
Q ss_pred cCCCCCCCCccEEEeccccccc
Q 005417 339 KQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 339 ~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..++++ .||.|+++.. ++.
T Consensus 85 ~~~~~~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 85 LKVDLP--EFNKVVSNLP-YQI 103 (258)
T ss_pred ccCCch--hceEEEEcCC-ccc
Confidence 888776 4899999865 443
No 162
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=6.4e-06 Score=86.65 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
...+||+|||.|..+..- +...+.+.|.+...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999764321 334688999999988888876643 45557999999999999999999885554422
Q ss_pred --HHHHHHHHHHhccCCeEEEEEeCC
Q 005417 364 --DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 364 --~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...+++|+.|+|||||...+....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 257999999999999998876653
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.93 E-value=5.9e-05 Score=74.60 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C-----CCcEEEeecccC-C--C-CCCCCccE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G-----LPAMIGSFASKQ-L--P-YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---g-----l~~~~~~~da~~-L--P-fpd~sFDl 350 (697)
...+|||+|||+|..+..++... ....|+..|..+ .++..+.. + ..+.+..++-.. . . ...++||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45899999999999998888872 346788999988 66554432 1 122333322111 1 0 23468999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+++.| ++.....+.++.-+.++|+|+|.++++...
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999 444566678999999999999998887663
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.92 E-value=5.4e-05 Score=85.02 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..+++.. ..|+++|.++.+++.|++. ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4789999999999999998863 4689999999999888753 33 45677777654 23445689999976
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-... .-...++..+.+ ++|++.++++..
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4311 112456666554 899998888753
No 165
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.90 E-value=0.00014 Score=73.82 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++.++ ..+++++|.++..++.+++. ++ ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 3689999999999998766664 35799999999998877643 33 35566666543 2223457999998855
Q ss_pred ccccccHHHHHHHHHH--hccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~R--vLKPGG~Lvis~p 386 (697)
+.. .-...++..+.. +|+|+|.++++..
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 221 122345555554 4899999998865
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.89 E-value=0.00012 Score=77.53 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHH---------cCCC---------------
Q 005417 283 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLE---------RGLP--------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~gvD~S~~ml~~A~e---------rgl~--------------- 330 (697)
..-+|.-.||+||. ++..|.+... ....|.|.|++...++.|++ ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999995 4555555542 25789999999999998873 1221
Q ss_pred ----------cEEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEe
Q 005417 331 ----------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 331 ----------~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1233333333332446799999999977766443 579999999999999999954
No 167
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.88 E-value=3.9e-05 Score=77.04 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=86.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc--ccccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|+|+|||+|.++.+|... .+- ..|+-+|.. ..+. .+-+.|+ +-+++.-.+.++. ..+||+|-|.. +
T Consensus 47 ~~VLDiGcGtG~~al~la~~-~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~ 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA-RPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c
Confidence 46999999999988877642 221 245555553 3332 2223444 3444444445554 57999999843 1
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEee-ec-cC--CCccEEEEEcc
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE-IE-SN--SDERLLICQKP 690 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~-~e-~~--~~~~~li~~K~ 690 (697)
..+..++-++-|+|||||.+++-+......++.++++.+-|++..+- .| +| ++..+.|.+|+
T Consensus 122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 23557888999999999999999888888899999999999965442 11 11 23446666664
No 168
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.85 E-value=0.00012 Score=76.60 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCcc---EEEeccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFD---lV~~~~~ 356 (697)
..+|||||||+|.++..|++++ ..++++|.++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 4799999999999999999885 24899999999999887652 3466777888888775 466 7777644
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.85 E-value=7.4e-05 Score=76.15 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-----CCCCCccEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-----fpd~sFDlV 351 (697)
+++|||||+++|..+.++++.-.....++.+|.+++..+.|++. |+ .+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999999999997633456899999999999888642 43 34555555533 12 123589999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. ..+....+..+.++|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 96643 344567889999999999999997653
No 170
>PLN02476 O-methyltransferase
Probab=97.84 E-value=0.00011 Score=78.03 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccC-CC-C----CCCCccE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-Y----PSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-LP-f----pd~sFDl 350 (697)
++.+|||||+|+|..+..++..-.....++.+|.+++..+.|++. |+. +.+..+++.. |+ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 358999999999999999987422234689999999999888643 543 4555555433 22 1 2368999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.-.- ..+...++..+.++|+|||.+++...
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 986532 23346789999999999999998654
No 171
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.84 E-value=7.7e-05 Score=78.08 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 005417 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 339 (697)
Q Consensus 266 ~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 339 (697)
.|...+.+.++ .+|||.|.|+|.++..|+..-.+...|..+|.+++..+.|++. ++ .+.+...|..
T Consensus 31 ~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 31 YILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 45566666666 9999999999999999997644556899999999999888754 44 3566666765
Q ss_pred CCCCC---CCCccEEEeccccccccccHHHHHHHHHHhc-cCCeEEEEEeCCC
Q 005417 340 QLPYP---SLSFDMLHCARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 388 (697)
Q Consensus 340 ~LPfp---d~sFDlV~~~~~llh~~~d~~~~L~El~RvL-KPGG~Lvis~p~~ 388 (697)
.-.|+ ++.||.|+.- .++|-.++..+.++| ||||++++-.|+.
T Consensus 103 ~~g~~~~~~~~~DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD------LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp CG--STT-TTSEEEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccccccCcccEEEEe------CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 44442 3679999754 256668999999999 9999999988864
No 172
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.82 E-value=5.5e-05 Score=86.84 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CcEEEeecccCCC--CCCCCccEEEec
Q 005417 282 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLP--YPSLSFDMLHCA 354 (697)
Q Consensus 282 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~LP--fpd~sFDlV~~~ 354 (697)
.....+||||||.|.++..++... +...+.|+|.+...+..+. +.++ ++.+...++..+. ++++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 346789999999999999999885 5578999999988776554 3354 3334444543332 788999999999
Q ss_pred cccccccccH--------HHHHHHHHHhccCCeEEEEEeC
Q 005417 355 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+. -.|.... ..+|..+.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 87 6664322 3689999999999999998754
No 173
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.81 E-value=1.5e-05 Score=80.17 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=61.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCc---ccccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-+|||+|||.|.++..|.+.+..|..+-+.| ..+.. +-++|+ -....|..+ + .++.+||+|-|..+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~----~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNP----MSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 4799999999999999987444444443322 22222 233444 223344432 2 235789999998877
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
... +.-....++-+|-|.|+|||++++
T Consensus 106 ~~~----~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL----EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC----CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 543 223456799999999999999654
No 174
>PRK04148 hypothetical protein; Provisional
Probab=97.80 E-value=0.00012 Score=69.88 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCEEEEeCCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC-CCCccEEEecccccccc
Q 005417 284 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~-~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfp-d~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|. ++..|++.| ..|+++|+++..++.+++.++.+... |..+-.+. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~d--Dlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVD--DLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEEC--cCCCCCHHHHhcCCEEEEeCC----C
Confidence 3789999999996 888888876 46899999999999999887655443 44433322 356999998876 2
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++....+.++.+.+ |.-++|..
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEc
Confidence 33334555555544 34455543
No 175
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.77 E-value=2.3e-05 Score=83.36 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc-c-cccccccccCCCCCCccccccccCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl-i-g~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+|||+|||.|.++.+|.+.+. .|+-+|.. .-+. .+-+.|+ + -...|.-+ .+ .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhh
Confidence 799999999999999987433 33444443 3232 2334565 1 11122222 11 268899999988876
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE---cCH-----------HHHHHHHHHHhhcCceeEEe
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~ 674 (697)
... +-.+..++-+|-|+|+|||++++- ++. -.-++++++.+. |++...
T Consensus 196 ~l~----~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 196 FLN----RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hCC----HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 543 235668999999999999996552 111 113455555554 888776
No 176
>PLN02244 tocopherol O-methyltransferase
Probab=97.77 E-value=1.8e-05 Score=86.42 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=60.8
Q ss_pred eeEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCCCchhh----HhccCccc----ccccccc-cCCCCCCccccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPM----ILDRGFVG----VLHDWCE-AFPTYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~~~l~~----i~~RGlig----~~~~~~e-~f~typrtyDl~H~ 615 (697)
-..|||+|||.|+++..|.+. +..|..+.+.| .++.. +-++|+.. +..|..+ +|+ +.+||+|.+
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s 192 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWS 192 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEE
Confidence 457999999999999999862 12333333322 33332 22345421 1223322 333 389999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
...+.++. +...+|-||-|+|||||.++|.+
T Consensus 193 ~~~~~h~~------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMP------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77766554 23478999999999999999853
No 177
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.77 E-value=2.6e-05 Score=78.36 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchhh----HhccCcc--cccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGli--g~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+.+. .|+-+|-. ..+.. +-+.|+- ....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999987433 34444443 33332 2234541 2222322 222 35689999998887
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
.... .-....++-++.|+|+|||++++
T Consensus 105 ~~~~----~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFLQ----AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence 6543 23456899999999999999554
No 178
>PLN02672 methionine S-methyltransferase
Probab=97.76 E-value=7.3e-05 Score=91.80 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-----------------CcEEEeecccCCC
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-----------------PAMIGSFASKQLP 342 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-----------------~~~~~~~da~~LP 342 (697)
+.+|||+|||+|.++..+++.. ....++++|+|+.+++.|++. ++ ++.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999998874 335799999999999888543 11 245666665433
Q ss_pred CCC--CCccEEEecccccccc---------------------------------ccH----HHHHHHHHHhccCCeEEEE
Q 005417 343 YPS--LSFDMLHCARCGVDWD---------------------------------QKD----GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 343 fpd--~sFDlV~~~~~llh~~---------------------------------~d~----~~~L~El~RvLKPGG~Lvi 383 (697)
+.+ ..||+|+++--.+... +|. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999974321100 111 3577888899999999988
Q ss_pred EeC
Q 005417 384 TSP 386 (697)
Q Consensus 384 s~p 386 (697)
..-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 654
No 179
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.76 E-value=0.00024 Score=77.10 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=63.8
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 005417 259 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 331 (697)
Q Consensus 259 ~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~ 331 (697)
....|+..+++++..............+|||||||+|.....|+.+. ...+++++|+++.+++.|++. ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35778888888876432111222345789999999998888777653 346799999999999988743 232 2
Q ss_pred EEE-eecccCCC----CCCCCccEEEeccc
Q 005417 332 MIG-SFASKQLP----YPSLSFDMLHCARC 356 (697)
Q Consensus 332 ~~~-~~da~~LP----fpd~sFDlV~~~~~ 356 (697)
.+. +.+...+. .+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 222 12222221 24678999999966
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.75 E-value=0.0002 Score=73.65 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EEe-ecccC-CC-CCCCCccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~-~da~~-LP-fpd~sFDlV~~ 353 (697)
++.+|||||.+.|..+.+|+..-.....++.+|.++++.+.|++. |+... ... +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999999999987633256799999999999999754 44332 222 23221 11 45689999985
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.. ..+...++..+.++|+|||.+++...
T Consensus 139 Dad----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 DAD----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eCC----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 432 34446899999999999999998754
No 181
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.74 E-value=6.7e-05 Score=76.55 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=57.8
Q ss_pred eEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHh----ccCc--ccccccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~----~RGl--ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.- ..|..+-+.| +.+..+- +.++ +-+++.=.+.++.-+.+||+|++..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 479999999999999887521 1233322221 3332222 2233 2222211222331137999999877
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.... ....+|-|+-|+|+|||++++.+
T Consensus 123 ~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 123 GLRNVP------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ccccCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 665433 23468899999999999999865
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.74 E-value=0.00011 Score=83.27 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHH----HcC--CCcEEEeecccCCCCCCCCccEEEec
Q 005417 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTL----ERG--LPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~----erg--l~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
...|||||||+|.+....++.+ .....|++++-++.++...+ +.+ -.+.+...+++.+..+. ..|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4679999999999976665542 13568999999887664432 333 35778888999988775 89999997
Q ss_pred ccccccc--ccHHHHHHHHHHhccCCeEEE
Q 005417 355 RCGVDWD--QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 355 ~~llh~~--~d~~~~L~El~RvLKPGG~Lv 382 (697)
-.. .+. +--...|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 222 222457889999999999887
No 183
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00028 Score=74.04 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEe-
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGS- 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~- 335 (697)
+.+.+.+.+.+..... .....+||+|||+|..+..++.. .....++++|.|+.++..|.+. ++..++.+
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555566555543222 13358999999999999998765 4567899999999999877654 33322221
Q ss_pred -ecc-----cCCCCCCCCccEEEeccccccccccH--------------------------HHHHHHHHHhccCCeEEEE
Q 005417 336 -FAS-----KQLPYPSLSFDMLHCARCGVDWDQKD--------------------------GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 336 -~da-----~~LPfpd~sFDlV~~~~~llh~~~d~--------------------------~~~L~El~RvLKPGG~Lvi 383 (697)
.++ ...+...+.+|+++|+--.+. .+|. -.++.-+.|.|+|||.+.+
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 111 223355789999999854221 1111 1245567899999999999
Q ss_pred EeCC
Q 005417 384 TSPL 387 (697)
Q Consensus 384 s~p~ 387 (697)
....
T Consensus 284 e~~~ 287 (328)
T KOG2904|consen 284 ELVE 287 (328)
T ss_pred Eecc
Confidence 8764
No 184
>PLN02823 spermine synthase
Probab=97.73 E-value=0.00025 Score=77.51 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||.||+|.|..+..++++. ...+++.+|+++.+++.|++.. ..+.+...|+.. +.-.+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45799999999999999888763 3467999999999999998642 233455555433 233457899999
Q ss_pred ecccccccccc------HHHHHH-HHHHhccCCeEEEEEeC
Q 005417 353 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d------~~~~L~-El~RvLKPGG~Lvis~p 386 (697)
+-.. -.+... ...+++ .+.+.|+|||.+++..-
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8632 211100 135777 89999999999988643
No 185
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.72 E-value=0.0002 Score=79.22 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC-CCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++..+ ..++++|.++.+++.|++. ++ ++.+..+++.... -..++||+|++.--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3689999999999999999764 4699999999999887753 34 4567777765432 122469999987441
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..-...++..+. .++|++.++++..
T Consensus 311 ---~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 ---RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999998864
No 186
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.72 E-value=5.3e-05 Score=83.35 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...++|+|||.|....+++.. ....++++|.++..+..+... ++ ...+...+....||++++||.+.+..+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~- 187 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV- 187 (364)
T ss_pred cccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee-
Confidence 347999999999999998766 345688999999888666543 22 223466788889999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.++...+++|++|+++|||+++..+..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 566788999999999999999999986553
No 187
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.70 E-value=0.00033 Score=74.18 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=93.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHHHc----C-------------------------CC
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTLER----G-------------------------LP 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml---~~A~er----g-------------------------l~ 330 (697)
+..+||==|||.|.++..++.+|+ .+.+.|.|--|+ ++.... + +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 456899999999999999999975 479999999996 233221 0 00
Q ss_pred -------------cEEEeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhh
Q 005417 331 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 394 (697)
Q Consensus 331 -------------~~~~~~da~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~l 394 (697)
.....+|...+..++ ++||+|++.+- +.-..+.-..|..|.++|||||+++=..|....-...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 001112222222233 69999998865 6656667789999999999999887777755432211
Q ss_pred --hh-HHhhhhhhhhhhhhhccceEEeeecC
Q 005417 395 --RN-KENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 395 --r~-~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
.+ ...+-.|+++..+++..+|+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 01 11345799999999999999986543
No 188
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.68 E-value=3.5e-05 Score=78.21 Aligned_cols=95 Identities=23% Similarity=0.405 Sum_probs=61.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---cc-ccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
+.|||+|||.|+++..+.+....+ +|+-++-. +++..+-+ .|+-+ ++ .|..+ . .+|.+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887631122 22323322 44443333 45522 22 22211 1 2367899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. +...++-++.|+|+|||++++.+
T Consensus 76 ~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIK------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCC------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 877654 24578999999999999999875
No 189
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.67 E-value=3.6e-05 Score=80.96 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=63.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-------c--ccccccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-------l--ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|.+.-.+-. +|+-+|-. +-|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988875211111 34444544 5555554442 1 222222234454323799999998
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
..+.... +...+|-||-|+|||||.+++.|
T Consensus 153 ~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7776543 34678999999999999998864
No 190
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00022 Score=72.35 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=69.7
Q ss_pred CEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CcEEEeecccCCCCCCCCc
Q 005417 285 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSLSF 348 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~erg---l------------~~~~~~~da~~LPfpd~sF 348 (697)
.+.||||.|+|.++..++.. +.......|+|..++.++.+++.- + ...+.++|....--+.+.|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999998887743 333333489999999998876531 1 2345677777776778899
Q ss_pred cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 349 DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|.|||... ..+..+++...|+|||.+++-.
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 99999854 2346677788899999998854
No 191
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.65 E-value=1.7e-05 Score=71.18 Aligned_cols=98 Identities=26% Similarity=0.391 Sum_probs=59.4
Q ss_pred eEEEecccCchhhhhhhhc--cCCCeEEEEeecCCCCCchhhHhc----cCcccc----cccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLE--KGKSVWVMNVVPTIGTNHLPMILD----RGFVGV----LHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~--~~~~vwvmnv~p~~~~~~l~~i~~----RGlig~----~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++.+|.+ ....|..+=..| ..+..+-+ .+.-.- ..|+ ..-...+..||+|.+.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP----EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 3689999999999999987 433333332211 33332222 333222 2333 2224445569999999
Q ss_pred C-ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 617 G-LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~-~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. .+..+. +......+|=++-+.|+|||+++|.+
T Consensus 78 ~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLL---PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCC---HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccc---chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 333232 11233456788999999999999975
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.63 E-value=0.00013 Score=78.92 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCc--EEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPA--MIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~--~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++...++.| ...|+++|.|.-+ +.|. ..+... .+..+..+.+-+|-++.|+|++...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45899999999999999999997 4578999988654 5444 344433 3344445555455679999999754
Q ss_pred ccccc--ccHHHHHHHHHHhccCCeEEE
Q 005417 357 GVDWD--QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~--~d~~~~L~El~RvLKPGG~Lv 382 (697)
.+-.. .....+|-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22211 223556777789999999876
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.61 E-value=0.00018 Score=77.24 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEe
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~ 335 (697)
...+.+.+.+...+ ..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + .++.+..
T Consensus 23 ~i~~~Iv~~~~~~~--------~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--------TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 34445555544333 3789999999999999999874 4589999999999988764 2 2466777
Q ss_pred ecccCCCCCCCCccEEEecccccccc
Q 005417 336 FASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.|+...+++ .||+|+++.- ++..
T Consensus 92 ~Dal~~~~~--~~d~VvaNlP-Y~Is 114 (294)
T PTZ00338 92 GDALKTEFP--YFDVCVANVP-YQIS 114 (294)
T ss_pred CCHhhhccc--ccCEEEecCC-cccC
Confidence 787666553 6899998754 4443
No 194
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00024 Score=73.07 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C---CCcEE
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G---LPAMI 333 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g---l~~~~ 333 (697)
+.+.+.+++.-..++ ..+.+|||...|-|.++...+++|. ..|..++-++..++.|.-. + ..+.+
T Consensus 118 dP~~Dt~~Kv~~V~~------~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKV------KRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheecc------ccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 455556655544333 2568999999999999999999974 3577788888888877632 2 13445
Q ss_pred EeecccCC--CCCCCCccEEEecccccccccc--HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhh
Q 005417 334 GSFASKQL--PYPSLSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 409 (697)
Q Consensus 334 ~~~da~~L--Pfpd~sFDlV~~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~l 409 (697)
..+|+.++ .|+|.+||+|+----.+..... -+.+.+|++|+|||||.++--+-.+..... - ......+.+.
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr--G---~d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR--G---LDLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc--c---CChhHHHHHH
Confidence 55665554 3889999999854322222211 257899999999999999876654443211 1 1222334444
Q ss_pred hhccceEEee
Q 005417 410 VENLCWELVS 419 (697)
Q Consensus 410 a~~~~w~ll~ 419 (697)
..+.+|+.+.
T Consensus 265 Lr~vGF~~v~ 274 (287)
T COG2521 265 LRRVGFEVVK 274 (287)
T ss_pred HHhcCceeee
Confidence 5566776543
No 195
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.58 E-value=7.8e-05 Score=77.30 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=61.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cc-ccccccccCCCCCCccccccccCccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig-~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..+|||+|||.|.++..|.+....|.. .|-. ..+..+-+++- +. +..|. +.++..+.+||+|-++..+. |
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~-----~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTA-----LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEE-----EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 467999999999999988763333333 3332 44444444432 11 12232 34444447999999876654 2
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. -+...+|-||-|+|+|||++++.
T Consensus 116 ~-----~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 C-----GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2 24567999999999999999986
No 196
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.58 E-value=0.00015 Score=71.54 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=75.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-cc-ccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-ig-~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||.|.++.+|.+.. + .|+-+|-. ..+..+-+ .|+ +- +..|+.+.+ +.+||+|-++-.|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCC
Confidence 459999999999999998732 2 33333332 22222211 222 11 223444432 4689999987665
Q ss_pred ccccCC---------------CCCCCcchhhhhhcccccCCcEEEEEcCHHH-HHHHHHHHhhcCceeEEee
Q 005417 620 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIE 675 (697)
Q Consensus 620 ~~~~~~---------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~ 675 (697)
...... ..++.+..+|-++.|+|+|||.+++-+.... ..++.++++..-|+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 432210 0122356789999999999999998765544 6677777777788887775
No 197
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00052 Score=74.60 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEE-
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIG- 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~- 334 (697)
..+.+.+.++.....+ ..|||==||||+++....-. ...++|.|++..|++-|+.. ++. ..+.
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3444455555554444 79999999999998777554 45689999999999888754 222 2233
Q ss_pred eecccCCCCCCCCccEEEeccc-----ccccc--cc-HHHHHHHHHHhccCCeEEEEEeC
Q 005417 335 SFASKQLPYPSLSFDMLHCARC-----GVDWD--QK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~-----llh~~--~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..|+..+|+++++||.|.+-.- ..... +. ..++|..+.++||+||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3499999999999999998532 01111 11 25789999999999999999888
No 198
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.55 E-value=6.3e-05 Score=78.39 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=64.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
..|||+|||.|.++.+|.+. .|- ..|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|++..+|....
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~-~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARR-WPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC--
Confidence 67999999999999999863 121 134444443 666667777742222332 2222 236899999998886543
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+...+|-|+-|+|+|||++++.
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEE
Confidence 2357899999999999999986
No 199
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.55 E-value=3.6e-05 Score=80.32 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---ccc-cccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~~-~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+.. +.+ |..+--+..+.+||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4899999999999999987433 34444443 44444333 34422 111 22221112347999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
++.... +...+|-|+-|+|+|||++++-
T Consensus 121 vl~~~~------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVA------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 887554 2347899999999999999874
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.54 E-value=0.00072 Score=76.99 Aligned_cols=108 Identities=22% Similarity=0.350 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEE----
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH---- 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~---- 352 (697)
.+.+|||++||+|.=+.++++.--....++++|+++.-++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 458999999999999999987632335799999999887666543 554 345556666553 2345799999
Q ss_pred eccccc---------ccccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 353 CARCGV---------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 353 ~~~~ll---------h~~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|+.... .|.+. ..++|....+.|||||+|+.++-....
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 663311 11110 035788999999999999999876544
No 201
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.54 E-value=6e-05 Score=81.77 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=58.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cc---ccccccccccCCCCCCccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Gl---ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+.|||+|||.|.|+..|++.+ +-.|.-|=|.... .+...+ .+ +. |-+...=-+.+|. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 689999999999999998742 2222222221110 010111 11 10 1111111134454 78999999988876
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+. -+...+|-++-|+|+|||.+|+.
T Consensus 201 H~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HR------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 34567999999999999999985
No 202
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00041 Score=69.49 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|+|+|||||.++...+-.| ...|+++|+++++++.+++. +..+.+.++|..+. +..||.|+.+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPP 117 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPP 117 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCC
Confidence 45789999999999988887776 35689999999999988754 23577777776665 367899988743
No 203
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.50 E-value=0.00052 Score=68.31 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCcee--------EEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCcc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTM--------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~--------sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFD 349 (697)
...|||--||+|++....+..+.... .+.|.|+++.+++.|++. ++ .+.+.+.|+..+++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 47899999999999866654432222 388999999999887654 33 35577889999998888999
Q ss_pred EEEeccccccc-ccc---H----HHHHHHHHHhccCCeEEEEE
Q 005417 350 MLHCARCGVDW-DQK---D----GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 350 lV~~~~~llh~-~~d---~----~~~L~El~RvLKPGG~Lvis 384 (697)
.|+++-- +-. ... . ..+++++.++|++...++++
T Consensus 109 ~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999843 211 111 1 25789999999994444443
No 204
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.49 E-value=8.2e-05 Score=74.19 Aligned_cols=114 Identities=11% Similarity=0.230 Sum_probs=71.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc--ccccc-cccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--ig~~~-~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++ -+.|+ |-+++ |.. .++ ...+||+|-+..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~-~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA-RPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc-ccCCccEEEehh-
Confidence 58999999999887766532 111 123333433 322222 22344 22222 222 222 347999998754
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcC-ceeEEee
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~~ 675 (697)
+ ..+.+++-++.|+|+|||.+++........++..+.+++| |.....+
T Consensus 118 ~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 118 L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 2 2344678888999999999999988878888888888766 6666554
No 205
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.46 E-value=4.5e-05 Score=80.95 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=63.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCcccccccccccCCCCCCccccccccCcccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.|||+|||.||++-.+.+. ..+=|.-|.. +++|+.. |-++||-....--+.-|...+-+||-|=+-+.|.+..
T Consensus 65 ~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 65 RVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred EEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 8999999999999999973 3553333332 2255554 4578885544433444444455899988888877652
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+-....++-.++|+|+|||.+++.
T Consensus 142 ----~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 ----RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 244567899999999999999975
No 206
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.46 E-value=6.2e-05 Score=79.25 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=60.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccc-ccccc-ccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWC-EAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~-~~~~~-e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||+|+++..|... .. ..|+-+|-. +.+..+-+|- -+-. ..|.. .+|+ +.+||+|++..++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 46999999999999888642 22 133333333 4444444431 1111 12221 2333 2799999997665
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.+.. ......+|-|+-|+|+|||++++.|-
T Consensus 128 ~h~~----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHLS----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5432 12455789999999999999999753
No 207
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.44 E-value=0.00054 Score=71.79 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-----CCCCccE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-----PSLSFDM 350 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-f-----pd~sFDl 350 (697)
.++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.. |+ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 57999999999999999986532346799999999998888643 43 34455554432 22 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.-.- .......+..+.+.|+|||.+++...
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 986532 23345688888999999999887643
No 208
>PRK08317 hypothetical protein; Provisional
Probab=97.41 E-value=0.00013 Score=73.57 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=61.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cccccc----ccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~----~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..+.+.-.+- -+|+-+|.. +.+..+-++ +..... .|.. .++.-+.+||+||+..+|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechh
Confidence 479999999999999887521010 133333433 555555554 111111 1221 122213689999999888
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.... +...++-++-|+|+|||++++.+
T Consensus 98 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7654 34578999999999999999854
No 209
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.39 E-value=0.0024 Score=64.19 Aligned_cols=99 Identities=15% Similarity=0.001 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-CCC-CccEEEe
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PSL-SFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-f-pd~-sFDlV~~ 353 (697)
..+|||++||+|.++..++.+|. ..++++|.++.+++.+++. +. .+.+...|+.. +. + ... .||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 47899999999999999999974 3689999999998877643 33 24566666633 22 1 122 4788776
Q ss_pred ccccccccccHHHHHHHHH--HhccCCeEEEEEeC
Q 005417 354 ARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p 386 (697)
--- +.. .....++..+. .+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 543 221 22334444443 47899998888654
No 210
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0012 Score=65.67 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+..+||||||+|..+..|++.-.......++|+++.+++.. +..+..+..++.|...- ...++.|+++.+.-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 357899999999999999998755566678999999987654 33455544554443221 2337888888764311
Q ss_pred c--------------cc--cc----HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 359 D--------------WD--QK----DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 359 h--------------~~--~d----~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. |. .+ ..+++..+..+|.|.|.|++.....+.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1 11 11 135677788889999999998765443
No 211
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.39 E-value=0.0002 Score=72.49 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=75.0
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCC-C-CCccccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~t-y-prtyDl~H~ 615 (697)
-.+|||+|||.|.++..|.+. .+- .+|+-+|-. ..+..+-+ -|+ +- +..|..+.++. + +.+||+|-+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 468999999999999988752 111 123333332 33332221 233 11 22233233441 3 478999987
Q ss_pred cCcccccc---CCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005417 616 EGLLSLES---GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 616 ~~~~~~~~---~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
..... |. ....+.....+|-++.|+|+|||++++. +.......+.+....--|.+.+.
T Consensus 118 ~~~~p-~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDP-WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCC-CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 54321 21 0002234567899999999999999996 66777777777777777877643
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=97.38 E-value=0.0025 Score=67.42 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCCCCCCCCccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
++++||=||.|.|..+..++++. .+|+.+|+++.+++.+++-- ..+.+.. .. ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 57999999999999999999984 38999999999999998731 1222221 11 1112368999997
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
-.. ....+.+.++|.|+|||.++...-.+
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 633 23578899999999999999976544
No 213
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.38 E-value=0.00024 Score=70.59 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=69.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccccccccc-ccCCCCCCccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWC-EAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~-e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++... .+- .+|+-.|-. ..+..+-+ .|+-. +.-.+ .....++..||+|.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~-~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQ-FPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 47999999999999888753 111 123333332 23333221 23211 11111 1112345789999985433
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCce
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 670 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 670 (697)
..+..++-++-|+|+|||++++.. ..+..+++.++.+...++
T Consensus 108 --------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 --------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred --------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 234568888999999999999976 456677888888888885
No 214
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.37 E-value=0.00024 Score=74.92 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccc-ccccc-ccCCCCCCccccccccCccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWC-EAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~-~~~~~-e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||.|.+++.|.+.-.+.=..+|+-.|-. +.+..+-+|.- +.. ..|-. .+|+ +.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~~--~~-- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIRI--YA-- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEEe--cC--
Confidence 56999999999999998752111101244555554 66666655531 111 12222 2343 3799999862 22
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
...+-|+.|+|+|||++|+..
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEe
Confidence 124679999999999999864
No 215
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.37 E-value=0.0005 Score=71.76 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=66.3
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCCCchhhHhc----cCcccccccccccCCCCCCccccccccCcccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~~~l~~i~~----RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|..+.++...+.. |..+-+-| ..+..+-+ .|+-...+ ++.-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 57999999999888877653222 33322222 33333322 23311111 1110116999998543222
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005417 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
+..++-++-|+|+|||++|+++- .+..+++.+..+...++....
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 23577799999999999999864 344667777777777876654
No 216
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.34 E-value=0.00026 Score=75.54 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=66.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCC-CCCccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~t-yprtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++...+. -.|+-+|-. ..+..+.++ |+-..+...+..... .+..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 5899999999998877764221 123333332 333333322 221112222221222 246899999965433
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. ..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 237 ~l---------~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 VI---------KELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HH---------HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 22 3688899999999999999753 23455666655555 766544
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.34 E-value=0.0003 Score=69.38 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc------cCCC--C--CCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLP--Y--PSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da------~~LP--f--pd~sFDlV~ 352 (697)
...+|||+||++|.|+..+++++.....+.++|..+.. ....+...++|. ..+. + ..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45899999999999999999996556789999997651 001111111111 1111 1 226899999
Q ss_pred eccccccccc----cH-------HHHHHHHHHhccCCeEEEEEeCC
Q 005417 353 CARCGVDWDQ----KD-------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~----d~-------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|-.+ ..... +. ...+.-+...|+|||.+++-...
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9763 22111 11 13455566789999999987764
No 218
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.32 E-value=0.0013 Score=73.23 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
.+|||++||+|.++..++... ....|+++|.++..++.+++. ++. ..+...|+..+....+.||+|++.--
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 589999999999999997753 234799999999999887653 343 33566666543221457999997631
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+..++....+.+++||++.++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 234568888788899999999994
No 219
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.31 E-value=0.0019 Score=64.86 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=69.4
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC-cEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~-~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
+++|||+|.|.-+..|+=. .+...++.+|....-+.+.+ +-++. +.+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 7999999999988777654 24567999999987765443 44665 6676667776 555679999999866
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEe
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 446688999999999999988764
No 220
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.30 E-value=0.002 Score=68.51 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=91.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHH----HHcCCCc--EEEeecccCC---CCCCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQL---PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~L---Pfpd~sFDlV~ 352 (697)
.+-+||||.||.|......++.... ..+|.-.|.|+..++.. +++|+.. .|.+.|+-+. .--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4578999999999988777665322 46889999999988654 4567653 5666665332 21233579999
Q ss_pred eccccccccccH---HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH---Hhh--hhh-------hhhhhhhhccceEE
Q 005417 353 CARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---ENQ--KRW-------NFVRDFVENLCWEL 417 (697)
Q Consensus 353 ~~~~llh~~~d~---~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~---e~~--~~W-------~~l~~la~~~~w~l 417 (697)
.+.. +...+|. ...|.-+.+.+.|||+++.+.-+..++-++-.. .++ ..| .+|..+.+.-+++.
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9987 6666553 457999999999999999987433322111111 111 234 66777777777765
Q ss_pred eee
Q 005417 418 VSQ 420 (697)
Q Consensus 418 l~~ 420 (697)
+.+
T Consensus 294 ~~q 296 (311)
T PF12147_consen 294 IDQ 296 (311)
T ss_pred hhh
Confidence 533
No 221
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.30 E-value=0.00015 Score=73.34 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=60.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC---cccccccccccCCCCCCccccccccCccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG---lig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..|||+|||.|.|...|.+....+ .|+-+|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998632111 12222322 2232232321 11122222 2334445899999998887643
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. +...+|-++.|+|+|||++++..
T Consensus 112 ~------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 35579999999999999999863
No 222
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0015 Score=73.49 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=93.2
Q ss_pred ccccc-ccccchhhhHHHHHHHHhccccccccccCCC-EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005417 250 FRSAS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVR-TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 250 F~~~~-~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~-~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
|...+ ..|+.+.+|......++..... .. ++|-+|||.-.+...+.+.|+. .|+.+|.|+..++....+
T Consensus 20 f~~rg~~~~ewY~~~l~l~~~i~~~~~p-------~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~ 90 (482)
T KOG2352|consen 20 FQPRGSDPFEWYGALLSLSGSIMKYLSP-------SDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVR 90 (482)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhhch-------hhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhc
Confidence 44432 4455555555544444432221 23 8999999999999999998754 689999999998888776
Q ss_pred CC----CcEEEeecccCCCCCCCCccEEEeccccccccccH---------HHHHHHHHHhccCCeEEEEEeC
Q 005417 328 GL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD---------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 328 gl----~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~---------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+. ...+...++..+.|++++||+|+-.+.+.+...+. ...+.++.|+|+|||+++....
T Consensus 91 ~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 91 NAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 63 23467789999999999999999988744443322 2457899999999999887665
No 223
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.29 E-value=0.00017 Score=80.16 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=62.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
..|||+|||.|+++..|.+. ..+ .|+-+|-. .++..+-+| |+ . ..-.+..+...+.+||.|.+...|.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 37999999999999988752 232 34444433 666666554 32 1 1111222222357899999988876542
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.-....++-++.|+|+|||++++.
T Consensus 243 ----~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 ----PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234557899999999999999985
No 224
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.25 E-value=0.0032 Score=66.92 Aligned_cols=104 Identities=17% Similarity=0.103 Sum_probs=65.9
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcE---E-EeecccCCCCCCCCccEEEec
Q 005417 282 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---I-GSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 282 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~---~-~~~da~~LPfpd~sFDlV~~~ 354 (697)
..+.+|||+|||+|..+..+.+.--...+++.+|.|+.|++.++.- ..... . ...-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3568999999999986655544311345789999999999877642 11111 0 00111123333 34999999
Q ss_pred ccccccccc-HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 355 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+++.+..+. ...+++.+.+.+.+ +|+|.+++..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 997766542 23466666666655 9999998754
No 225
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.22 E-value=0.0016 Score=66.66 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=83.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC---CCCCccEEEecccccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPf---pd~sFDlV~~~~~llh~~ 361 (697)
-++|||||=.......- . ....|+++|.++. ...+...|....|. +++.||+|.|+.+ +.+.
T Consensus 53 lrlLEVGals~~N~~s~--~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--S--GWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCcccc--c--CceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 68999999755443221 2 2345899998752 11233345555555 4679999999988 8888
Q ss_pred ccH---HHHHHHHHHhccCCeE-----EEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecCc----eEEEEe
Q 005417 362 QKD---GILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE----TVVWKK 429 (697)
Q Consensus 362 ~d~---~~~L~El~RvLKPGG~-----Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~~----~~IwqK 429 (697)
+++ ..+++.+++.|+|+|. |++..|.+-.... + .-.-+.+..+.+.+++..+..+.. ..+|++
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-R----y~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-R----YMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-c----ccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 877 4699999999999999 9998886532110 0 112245566788889988766432 245555
Q ss_pred c
Q 005417 430 T 430 (697)
Q Consensus 430 ~ 430 (697)
.
T Consensus 193 ~ 193 (219)
T PF11968_consen 193 S 193 (219)
T ss_pred c
Confidence 3
No 226
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.20 E-value=0.0002 Score=77.85 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=66.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccccccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||+|||.|.|+.+|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=|..+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 3799999999999998876332 45555554 555555443 22 22222223455544579999999888
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. +...+|-|+-|+|+|||.+++.+
T Consensus 208 LeHv~------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHVA------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87664 34679999999999999999874
No 227
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.20 E-value=0.00026 Score=76.71 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=58.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCcccccccccccCCCCCCccccccccCcccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+.|||+|||.|.++.+|+..+ .--|.-|=|.... .+...+- ..+-+.+...=-+.++. +.+||+|-|.+++.+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 689999999999998887632 2223333332221 1211110 11111111111122332 248999999988865
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. -+...+|-|+-|+|||||.+|+.
T Consensus 201 ~------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 4 35568999999999999999985
No 228
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.19 E-value=0.00094 Score=69.87 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=79.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc---Cc----ccccccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R---Gl----ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|+|+|||.|.++.+|... .+- .+|+-+|.. ..+..+-+. +. -=+..|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~-~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKE-RPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 36999999999999999863 221 233444433 333333322 22 112234544443 378999988543
Q ss_pred cccccCC----C-------------CCCC---cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeecc
Q 005417 619 LSLESGH----R-------------HRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 678 (697)
Q Consensus 619 ~~~~~~~----~-------------~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 678 (697)
+.....- . .... +..++-++-++|+|||++++.-....-+.++.+.+...+.......+-
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 3211000 0 0000 125667788999999999996444445667777777666533332344
Q ss_pred CCCccEEEEEc
Q 005417 679 NSDERLLICQK 689 (697)
Q Consensus 679 ~~~~~~li~~K 689 (697)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 55788888765
No 229
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.17 E-value=0.0008 Score=66.92 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred eEEEecccCchhhhhhhhccCC---CeEEEEeecCCCCCchhhHhccCccccccccccc---------CCCCCCcccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~---~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~---------f~typrtyDl~H 614 (697)
.+|||+|||.|+++.++..... .|+..=+.|.. .+ .|+--+.+|..+. ++ +.+||+|=
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~--~~~~D~V~ 103 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVG--DDKVDVVM 103 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhC--CCCccEEE
Confidence 4899999999999887765211 24443333321 00 1222222344332 22 25799988
Q ss_pred ccCcc--cc-ccC--CCCCCCcchhhhhhcccccCCcEEEEE-cC----HHHHHHHHHHHhhcCceeEEeeecc---CCC
Q 005417 615 AEGLL--SL-ESG--HRHRCSTLDIFTEIDRILRPEGWVIIR-DT----ARLIESARALTTRLKWDARVIEIES---NSD 681 (697)
Q Consensus 615 ~~~~~--~~-~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~~e~---~~~ 681 (697)
++... +. |.- ....+.+..+|-++-|+|+|||.+++- .. .+++++++. .+ |+..+...-. .+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 75431 11 100 001123457899999999999999993 22 233333333 32 5555543222 245
Q ss_pred ccEEEEE
Q 005417 682 ERLLICQ 688 (697)
Q Consensus 682 ~~~li~~ 688 (697)
|..+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8888885
No 230
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.16 E-value=0.0014 Score=70.44 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+.|||||||.|.++...++.|. .+|++++.| +|.+.|++. .+ .+.+..+..+++.+|+ ..|+|++.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccc
Confidence 457899999999999998888873 468999987 477877653 22 2334445566666664 8999998765
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEE
Q 005417 357 GVDWDQKD-GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvi 383 (697)
..-..... -...-..++.|||.|.++=
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 33322211 1233345699999999873
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.15 E-value=0.0033 Score=68.26 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-cEE--EeecccC----CCC--CCCC
Q 005417 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLS 347 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~ergl----~-~~~--~~~da~~----LPf--pd~s 347 (697)
...|+|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ .+++... ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 3589999999999877766541 123568999999999988765422 2 333 3344322 221 2245
Q ss_pred ccEEEeccccccccccH--HHHHHHHHH-hccCCeEEEEEeC
Q 005417 348 FDMLHCARCGVDWDQKD--GILLLEVDR-VLKPGGYFVWTSP 386 (697)
Q Consensus 348 FDlV~~~~~llh~~~d~--~~~L~El~R-vLKPGG~Lvis~p 386 (697)
..+++..+..+...+.. ..+|+++.+ .|+|||.|+|..-
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 78888777656655444 368999999 9999999998753
No 232
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0053 Score=65.64 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------CcEEEeecccCC-CCCCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQL-PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~~~~~~~da~~L-Pfpd~sFDlV~ 352 (697)
.+++||-||-|.|..+..++++. ....++.+|+.+..++.+++.-. .+.+...|.... .-..++||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999985 36789999999999999987521 123333343322 21233899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005417 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+-.. -.-.+. ...+++.+++.|+++|.++...-.
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 8643 221111 157999999999999999998443
No 233
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.15 E-value=0.00085 Score=67.29 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-----cccccccccccCCCCCCccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-----lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++... .+. .-.++-.|.. ..+..+-++. +--+..|-.+ .+.-+.+||+|++...+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~-~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKS-APD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHh-cCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 58999999999999998863 221 0123333322 3333333332 1111122222 222236899999876664
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 345678999999999999999854
No 234
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.14 E-value=0.00078 Score=70.06 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=66.7
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cccc-ccccccCCCCCCccccccccCccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~-~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-.+|||+|||.|.++..|.+. .+- -+|+=+|-. ..+..+-++-- +.++ .|-.+..+ +.+||+|+++.+|...
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQWL 106 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhhC
Confidence 468999999999999988762 111 123333332 33333322210 1111 12111122 3689999999888644
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcC--H--HHHHHHHHHHhhcCcee
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--RLIESARALTTRLKWDA 671 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~~~~~~~~~~~~~~W~~ 671 (697)
. +...+|-+|-|+|+|||.+++.-. . .....+++++....|..
T Consensus 107 ~------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 107 P------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 3 245789999999999999998621 1 11223445555555553
No 235
>PTZ00146 fibrillarin; Provisional
Probab=97.11 E-value=0.00046 Score=73.84 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCCCCceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhcc-CcccccccccccC--CCCCCcccc
Q 005417 539 PSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDL 612 (697)
Q Consensus 539 ~~~~~~~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f--~typrtyDl 612 (697)
..+..+. +|||+|||.|+|...|.+. +-.|+.+-+.|.-..+.+.++-+| +++.+..|-+.+. ...+-++|+
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3445553 7999999999999998863 123555544432222344555444 6777788876542 111246888
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|-++-.. . + ....+++|+.|+|+|||+|+|.
T Consensus 206 V~~Dva~-p-----d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-P-----D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-c-----c--hHHHHHHHHHHhccCCCEEEEE
Confidence 8664421 1 1 1224678999999999999983
No 236
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.09 E-value=0.00034 Score=61.83 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=46.2
Q ss_pred EecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--ccccc-cccccCCCCC-CccccccccCccc
Q 005417 550 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 550 mDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig~~~-~~~e~f~typ-rtyDl~H~~~~~~ 620 (697)
||+|||.|.+..+|++. . -...++=.|-. +-+..+-+| +. .-... +--+.+...+ .+||+|.+..+++
T Consensus 1 LdiGcG~G~~~~~l~~~-~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE-L--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHH-C---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHh-C--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999973 2 22334444433 444222222 21 11111 1122233333 5999999999998
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEE
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWV 648 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~ 648 (697)
+.. .+..+|-.+-++|+|||.+
T Consensus 78 ~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHHHTTT-TSS-EE
T ss_pred hhh------hHHHHHHHHHHHcCCCCCC
Confidence 763 4568899999999999986
No 237
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.09 E-value=0.00092 Score=68.72 Aligned_cols=134 Identities=21% Similarity=0.318 Sum_probs=78.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc--ccc-cccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--ig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.|+.+|.+. .+- .+|+-+|-. ..+..+ -..|+ +-+ ..|+-+.++ +.+||+|-|+--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 36999999999999999863 121 134444432 333222 22344 112 224334443 278999998655
Q ss_pred cccccCC---CCCCC-----------------cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeecc
Q 005417 619 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 678 (697)
Q Consensus 619 ~~~~~~~---~~~c~-----------------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 678 (697)
|...... ...+. ...++-++-|+|+|||.+++.......++++++.....|+......+-
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEeCC
Confidence 4431100 00000 125677899999999999998766667788888888787654443333
Q ss_pred CCCccEE
Q 005417 679 NSDERLL 685 (697)
Q Consensus 679 ~~~~~~l 685 (697)
.+..+++
T Consensus 244 ~~~~r~~ 250 (251)
T TIGR03534 244 AGKDRVV 250 (251)
T ss_pred CCCcCee
Confidence 3344443
No 238
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.07 E-value=0.0034 Score=65.68 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-CCCCC-CccEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSL-SFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-Pfpd~-sFDlV 351 (697)
.+.+||=||-|.|..+..++++. ...+++.+|+++..++.|++-. .++.+...|+... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56899999999999999998874 3567999999999999987531 2445555554332 12223 89999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005417 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. -...+. ...+++.+++.|+|||.+++....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 97543 221111 147999999999999999998643
No 239
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.07 E-value=0.0023 Score=69.58 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.....+|+|.|.|..+..+... ++ .+.+++.....+-.++... ..+..+-+|+-+- .|. -|+|++-.++.||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3578999999999999999884 34 4778888877765554433 3344443443322 333 35999999988887
Q ss_pred ccH-HHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 362 QKD-GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 362 ~d~-~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++. .++|+.++..|+|||.+++.+....
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 544 6899999999999999999987544
No 240
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.05 E-value=0.0021 Score=67.79 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--------------------rgl~------------ 330 (697)
++.++||||||+-.+-..-+.. ...+|+..|.++.-++..++ .|-.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997663333323 35678999999877653321 0100
Q ss_pred -c-EEEeecccCCC-CCC-----CCccEEEeccccccccccHH---HHHHHHHHhccCCeEEEEEeCCC
Q 005417 331 -A-MIGSFASKQLP-YPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 331 -~-~~~~~da~~LP-fpd-----~sFDlV~~~~~llh~~~d~~---~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ .+...|..+.+ +.. ..||+|++.+|+.....+.+ .+++.+.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0 13334544433 322 25999999999666666664 68999999999999999987644
No 241
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.05 E-value=0.00029 Score=71.12 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc--Cccc---ccccccccCCCCCCccccccccC
Q 005417 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R--Glig---~~~~~~e~f~typrtyDl~H~~~ 617 (697)
...+++++++|||-|-|.+.|...-+.+.++-++|. -|..+-+| |+.. .-.+-.+..| +.+|||||++-
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~SE 114 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVLSE 114 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEEeh
Confidence 467999999999999999999875556666666543 22222222 2211 1112233334 38999999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEE---EcCH-------HHHHHHHHHHhhcCceeEEeeeccCC-CccEEE
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTA-------RLIESARALTTRLKWDARVIEIESNS-DERLLI 686 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~-------~~~~~~~~~~~~~~W~~~~~~~e~~~-~~~~li 686 (697)
++--+. +.-.+..++-.|...|+|||.+|+ ||.. .--+.|.++....-=++.-.....++ +|.-|+
T Consensus 115 VlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T PF05401_consen 115 VLYYLD---DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLL 191 (201)
T ss_dssp -GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEE
T ss_pred HhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEe
Confidence 987765 445566778888899999999998 4322 12355555555554444444333333 455554
Q ss_pred E
Q 005417 687 C 687 (697)
Q Consensus 687 ~ 687 (697)
+
T Consensus 192 ~ 192 (201)
T PF05401_consen 192 A 192 (201)
T ss_dssp E
T ss_pred e
Confidence 4
No 242
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.05 E-value=0.00071 Score=69.77 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=59.0
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhcc----Cc---c-cccccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GF---V-GVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~R----Gl---i-g~~~~~~e~f~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++..|.+.- .+- .+|+-+|-. +-+..+-++ +. + =+..|.++ ++. ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VEI--KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC--CCCCEEeee
Confidence 479999999999998887520 111 134444433 333333222 21 1 12223322 221 358999887
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
..+.... . -....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~---~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP---P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC---H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7766543 1 1234789999999999999999864
No 243
>PRK14968 putative methyltransferase; Provisional
Probab=97.00 E-value=0.0016 Score=63.76 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=75.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---------hccCcccccccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---------~~RGlig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|...+. +|+-.|-. ..+..+ -+||+.-+.+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 4799999999999999987433 33333433 333333 123355566777777654 589998655
Q ss_pred Ccccccc---------------CCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005417 617 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~---------------~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.-+.... +......+..++-++.|+|+|||++++--. ....+++.++.....|+....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 4332200 000122245688999999999999876422 233567778888888876554
No 244
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00031 Score=68.56 Aligned_cols=135 Identities=16% Similarity=0.304 Sum_probs=87.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCC--cEEEe-------ecccCCCCCCCCccEEEec
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP--AMIGS-------FASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~--~~~~~-------~da~~LPfpd~sFDlV~~~ 354 (697)
++||++|.|.-.++..|.....+..+|...|-++..++..++- ..+ ..+.. ....+.....++||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 7899999996555555554445677889999999888665432 111 00000 0111222345689999999
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC-ceEEEEecc
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD-ETVVWKKTS 431 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~-~~~IwqK~~ 431 (697)
.| +-+.+..+.+++.|++.|+|.|..++..|-... .-+.+..+....++....+.. +..|||+..
T Consensus 111 DC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 111 DC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------SLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred cc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc-----------hHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99 555555678999999999999998888774321 223344456666777766643 456777643
No 245
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.003 Score=66.56 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc
Q 005417 263 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK 339 (697)
Q Consensus 263 y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~ 339 (697)
..+.+.+.....+ .++|||||+|.|.+|..|++++ ..|+++++++.+++..+++. .+..+..+|+.
T Consensus 18 v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaL 86 (259)
T COG0030 18 VIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchh
Confidence 3455555554433 3899999999999999999985 44899999999999888763 35667788888
Q ss_pred CCCCCCC-CccEEEeccc
Q 005417 340 QLPYPSL-SFDMLHCARC 356 (697)
Q Consensus 340 ~LPfpd~-sFDlV~~~~~ 356 (697)
..++++. .++.|+++--
T Consensus 87 k~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 87 KFDFPSLAQPYKVVANLP 104 (259)
T ss_pred cCcchhhcCCCEEEEcCC
Confidence 8888754 6899998854
No 246
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.96 E-value=0.0021 Score=65.33 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||+-||.|.|+..+++.+ ....|.++|.++..++.+++. ++. +....+|+..+.- .+.||.|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 34899999999999999999842 345699999999988766542 343 4456778777755 789999998743
Q ss_pred cccccccHHHHHHHHHHhccCCeEEE
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lv 382 (697)
.....+|..+.+++|+||.+.
T Consensus 179 -----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCcEEE
Confidence 223368889999999999875
No 247
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.95 E-value=0.0024 Score=68.41 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc------CCceeEEEEecCCHHHHHHHHHc----CCC
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP 330 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~------g~~~~sV~gvD~S~~ml~~A~er----gl~ 330 (697)
....+.+.+++... ...+|||-.||+|.|...+.+. ......+.|+|+++.++..|+.. ++.
T Consensus 32 ~~i~~l~~~~~~~~--------~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--------KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcc--------ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 34444555555333 3478999999999998887763 12356799999999998877632 322
Q ss_pred c---EEEeecccCCCC-C-CCCccEEEeccccccc--c-----------------ccH-HHHHHHHHHhccCCeEEEEEe
Q 005417 331 A---MIGSFASKQLPY-P-SLSFDMLHCARCGVDW--D-----------------QKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 331 ~---~~~~~da~~LPf-p-d~sFDlV~~~~~llh~--~-----------------~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
. .+...+.-..+. . ...||+|+++--.-.. . ... -.++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 244445433332 2 4789999997431111 0 011 247888999999999998888
Q ss_pred C
Q 005417 386 P 386 (697)
Q Consensus 386 p 386 (697)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 7
No 248
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.90 E-value=0.00074 Score=70.38 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=67.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cc-----ccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig-----~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-+|||++||+|=+|..+.+. .+ .-.|+-.|-. +-|-++-+|-- .| ..+.==|.+|.-.+|||++=++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 47999999999999999873 22 3455555544 66666666643 12 1222234555334999999998776
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-+.. +++..|=||-|||+|||-+++=
T Consensus 130 rnv~------d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNVT------DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcCC------CHHHHHHHHHHhhcCCeEEEEE
Confidence 6543 5678999999999999988774
No 249
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.88 E-value=0.00061 Score=70.77 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=58.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc--cccccccccCCCCCCccccccccCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli--g~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||++||+|-++..|.+.-.+ .-.|+-.|-. +-|.++-+| |.. =....=.|.+|.-..|||.|=|+..+.
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~--~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGP--NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCC--ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 8999999999999888752111 1245555554 666666554 332 112222344553238999999877766
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. ++....|-||=|||||||.++|=
T Consensus 128 n~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 128 NF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp G-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 44 34667999999999999999984
No 250
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.85 E-value=0.0052 Score=67.86 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=63.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-C-CC-------------
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 344 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-P-fp------------- 344 (697)
.+|||++||+|.++..+++.. ..|+++|.++.+++.|++. ++ ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888762 4799999999999888754 44 456666665442 1 10
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 345 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...||+|+.---. ..-...++..+.+ |++.++++.-.
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 2258999875331 1112345555543 78888888653
No 251
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.76 E-value=0.007 Score=66.62 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--------C---C----
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--------Y---P---- 344 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--------f---p---- 344 (697)
.+|||++||+|.++..|++.. ..|+++|.++.+++.|++. ++ ++.+...++..+- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 3799999999999888754 34 4556666654421 1 0
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 345 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...||+|+.---. ..-...++..+. +|++.++++..+
T Consensus 276 ~~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 276 KSYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred ccCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcCH
Confidence 1137988765321 011134445443 478888888653
No 252
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.72 E-value=0.0035 Score=63.55 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=56.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---cccc-ccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
..|||+|||.|.++..+.+. .+- .-.|+-+|-. +.+..+-++ ++ +-+. .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~-~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKA-VGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHH-cCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 46999999999998888752 110 0123333322 222222221 11 1111 22221 222136899999877
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++... .....+|-++-++|+|||.+++.+
T Consensus 130 ~l~~~------~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV------PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC------CCHHHHHHHHHHhccCCcEEEEEE
Confidence 65433 456688999999999999998753
No 253
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.71 E-value=0.00098 Score=67.49 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=57.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cccc-ccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~-~~~~e~f~typrtyDl~H~~~~ 618 (697)
-+|||+|||.|.++..|.+.... ++=++.. ..+..+-+ -|+ +-.. .+..+-....+.+||+|.+..+
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 47999999999999988753222 2222322 22222222 122 1111 1111111122578999999887
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... ....+|-++.++|+|||.+++.+
T Consensus 122 l~~~~------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 76443 45578999999999999999875
No 254
>PRK05785 hypothetical protein; Provisional
Probab=96.70 E-value=0.0013 Score=67.77 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=60.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
.+|||+|||+|-++.+|.+.. . -+|+-+|-. +-|..+-+++ ...+.-.+.+|.=+.+||+|-++..+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 479999999999999987621 1 256666655 5565555553 12233334455334899999998776433
Q ss_pred CCCCCcchhhhhhcccccCCc
Q 005417 626 RHRCSTLDIFTEIDRILRPEG 646 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G 646 (697)
-+.+..|-||.|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 346789999999999954
No 255
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.68 E-value=0.0025 Score=63.98 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=68.3
Q ss_pred EEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCCCccccccccC
Q 005417 548 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.|+|||||.|.|+.++... +.. -.|+-+|.. ..+..+-+ -|+.. +..|..+..+.++..||.|.+..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~---~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGET---GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 7999999999998766431 011 123333332 22332211 23211 11233333333445788887632
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEee
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
....+..++-++-|+|+|||.+++. -..+.+.++...++.+.++..+.+
T Consensus 120 ---------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 120 ---------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred ---------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEEE
Confidence 1134457888999999999999983 345667777777777777666554
No 256
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.67 E-value=0.0009 Score=69.69 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=58.4
Q ss_pred eEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCC-CccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typ-rtyDl~H~~~~~ 619 (697)
..|||+|||.|.++.+|... ..+-+ .|+=+|.. .-+..+-+| |+..-..-.|..+...| ..||+|-+...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 46999999999998887641 01211 23334432 333333222 32111111122222222 358988877666
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.... ......++-||-|+|+|||.+++.|.
T Consensus 136 ~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLE----PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCC----HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5543 12345799999999999999999863
No 257
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.63 E-value=0.0052 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEE
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~ 334 (697)
...-+.+-+.+... . ..+.++||+=||+|.++...+.+|. ..++.+|.+...++..++. +.. ..+.
T Consensus 26 drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 26 DRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp HHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred HHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 44445555666533 0 1358999999999999999999984 4689999999988766543 332 3444
Q ss_pred eeccc-CCC---CCCCCccEEEeccccccccccHHHHHHHHH--HhccCCeEEEEEeC
Q 005417 335 SFASK-QLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 386 (697)
Q Consensus 335 ~~da~-~LP---fpd~sFDlV~~~~~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p 386 (697)
..|+. .++ .....||+|++--- +........++..+. .+|+++|.+++...
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ccCHHHHHHhhcccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 44422 221 24679999998754 332211256777776 79999999999765
No 258
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.60 E-value=0.0048 Score=65.70 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=81.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc----ccccccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl----ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
..|+|+|||.|.++.+|... .+- .+|+-+|-. ..+.++-+ -|+ -=+..||.++++. ..||+|=++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~-~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE-FPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999863 221 134444443 44444433 233 1233677776643 4799987752
Q ss_pred cccccc----------CCCCCC---------CcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHh-hcCceeEEeeec
Q 005417 618 LLSLES----------GHRHRC---------STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWDARVIEIE 677 (697)
Q Consensus 618 ~~~~~~----------~~~~~c---------~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 677 (697)
-+.... -+...+ .+..++-+.-++|+|||++++--....-+.++++.. ...|......-+
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 211100 000000 133677888999999999999765555567777665 456753322223
Q ss_pred cCCCccEEEEEc
Q 005417 678 SNSDERLLICQK 689 (697)
Q Consensus 678 ~~~~~~~li~~K 689 (697)
-.+.++++++++
T Consensus 271 ~~g~~R~~~~~~ 282 (284)
T TIGR00536 271 LNGKERVVLGFY 282 (284)
T ss_pred CCCCceEEEEEe
Confidence 445788888764
No 259
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.58 E-value=0.0017 Score=68.13 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=55.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc--c-cccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig--~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|..+..+...-.+- ..|+=+|-. ..+..+-++ |+-. . ..|. +.++.-+.+||+|++...
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~--~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPT--GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 499999999987544332210110 123333332 344444332 3211 0 1222 223322379999998776
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. +...++-|+-|+|||||.+++.|
T Consensus 156 ~~~~~------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 23578999999999999999964
No 260
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.58 E-value=0.0028 Score=63.60 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=67.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccc--c-ccccccC-CCCC-Ccccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV--L-HDWCEAF-PTYP-RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~--~-~~~~e~f-~typ-rtyDl~H~~ 616 (697)
+.|||+|||.|.|+.+|... .|- .||+=+|-. .-+..+ -..|+-.+ . .|.-+-. ..+| .++|.|+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~-~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ-NPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh-CCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 57999999999999999863 221 133333332 222222 23343111 1 1111111 1134 489999875
Q ss_pred CccccccC---CCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhh-cCcee
Q 005417 617 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDA 671 (697)
Q Consensus 617 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~-~~W~~ 671 (697)
.. ..|.. ...|.....+|-|+-|+|+|||.+++. |.....+.+.+.... -+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 32 12211 114556678899999999999999986 666556665554433 33554
No 261
>PRK06922 hypothetical protein; Provisional
Probab=96.57 E-value=0.0011 Score=77.64 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-ccccccccccCCC-C-CCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT-Y-PRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~~~~~e~f~t-y-prtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|... .+ ..+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 47999999999998888642 22 1244444443 334433332 21 1111111223442 2 489999998876
Q ss_pred cccccC----CCC---CCCcchhhhhhcccccCCcEEEEEcC
Q 005417 619 LSLESG----HRH---RCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 619 ~~~~~~----~~~---~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+..+-. .+. .-.+..+|-|+-|+|+|||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 654310 001 12455789999999999999999874
No 262
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.57 E-value=0.019 Score=66.43 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccC--C---CCCCC
Q 005417 284 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ--L---PYPSL 346 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~-------~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~--L---Pfpd~ 346 (697)
..+|||.|||+|.+...++++.. ....+.++|+++..+..++.. + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999988876521 136789999999999887654 1 122222222111 1 11125
Q ss_pred CccEEEeccc
Q 005417 347 SFDMLHCARC 356 (697)
Q Consensus 347 sFDlV~~~~~ 356 (697)
.||+|+++--
T Consensus 112 ~fD~IIgNPP 121 (524)
T TIGR02987 112 LFDIVITNPP 121 (524)
T ss_pred cccEEEeCCC
Confidence 7999999843
No 263
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.56 E-value=0.0035 Score=68.70 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc---ccccccccccCCCCCCccccccccCccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..|||+|||.|.++..|.+. .+- -+|+=+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+...+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887652 111 134444443 44554444321 112221122233324799999888777655
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------------HHHHHHHHHHhhcCceeEEe
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
. +...+|-|+-|+|+|||.+++.+.. ...+++.+++++..++....
T Consensus 192 ~------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 P------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 2246899999999999999875321 12366777778877875444
No 264
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.56 E-value=0.011 Score=66.04 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-C---CCCCCccEEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-P---fpd~sFDlV~ 352 (697)
+++|||+=|=||.|+.+.+..|. .+++.+|.|...++.|++. |+ ...+.++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 58999999999999999998863 3689999999999999865 33 245666665332 1 2345999999
Q ss_pred eccccccc--------cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 353 CARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~--------~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.---.+.- ..+...++..+.++|+|||.++++.-..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 75322221 1233468899999999999999987543
No 265
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.54 E-value=0.042 Score=61.18 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cC-----cccccccccccCCCCC-Cccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-----FVGVLHDWCEAFPTYP-RTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RG-----lig~~~~~~e~f~typ-rtyDl~H~ 615 (697)
..|||+|||+|-.+.+|.+. .|-. .|+-+|.. .-+..+-+ -+ -+-+++ ...++..+ .+||+|-|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-NPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence 47999999999999998863 2221 22333332 22222211 01 122222 22333333 58999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+-.|..-... ..-....++-+.-|+|+|||.+++-
T Consensus 305 NPPfh~~~~~-~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 305 NPPFHQQHAL-TDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcCcccCccC-CHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8777532200 0001236788899999999999985
No 266
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.54 E-value=0.011 Score=62.40 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CC----cEEE
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP----AMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~----~~~~ 334 (697)
....+++.+-...++ ++.|||||.|||.+|..|++.+ ..|++++.++.|+....+|. .+ ..+.
T Consensus 44 p~v~~~I~~ka~~k~--------tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKP--------TDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCC--------CCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 344445554444444 4899999999999999999985 45899999999998887763 33 2344
Q ss_pred eecccCCCCCCCCccEEEeccc
Q 005417 335 SFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|....++| .||.++++--
T Consensus 113 ~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 113 HGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred ecccccCCCc--ccceeeccCC
Confidence 5565555554 5999998743
No 267
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.50 E-value=0.012 Score=64.38 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
.+.++|||||++|.++..|+++|. .|+++|..+ |-... .....+.+...+.....-+.+.+|+++|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 568999999999999999999974 689999654 32222 2233455554454433222678999998855 5
Q ss_pred cHHHHHHHHHHhccCC--eEEEEEeC
Q 005417 363 KDGILLLEVDRVLKPG--GYFVWTSP 386 (697)
Q Consensus 363 d~~~~L~El~RvLKPG--G~Lvis~p 386 (697)
.|..++.-+.+.|..| ..+++.--
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 5777778888888776 45666543
No 268
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.49 E-value=0.011 Score=60.29 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=54.1
Q ss_pred eEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHhccCcccccccccc---------cCCCCCCcccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e---------~f~typrtyDl~H 614 (697)
.+|||+|||.|+|...|++.. ..|..+-+.|.. .+ .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---PI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---CC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 379999999999988776531 124444443311 11 122222233332 233 26899999
Q ss_pred ccCccccccCCCCC--------CCcchhhhhhcccccCCcEEEEE
Q 005417 615 AEGLLSLESGHRHR--------CSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 615 ~~~~~~~~~~~~~~--------c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
++....... .. +....+|-|+=|+|+|||.|++.
T Consensus 123 S~~~~~~~g---~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSG---TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred cCCCCccCC---ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 865322111 11 11246889999999999999995
No 269
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.47 E-value=0.0066 Score=62.01 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=62.3
Q ss_pred ccccch-hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------
Q 005417 255 LIFDGV-EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------ 327 (697)
Q Consensus 255 ~~yd~~-~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------ 327 (697)
..|-+. ......+.+.+.+.+ .+..+|||||.|......+-.- ......|+++.+...+.|...
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--------~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--------DDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--------T-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCC--------CCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 345332 333444445554443 4899999999999876665431 234478999998876555421
Q ss_pred -----CC---CcEEEeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEE
Q 005417 328 -----GL---PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 328 -----gl---~~~~~~~da~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
|. ++.+..+|....++.. ..-|+|++++.. +.++....|.++..-||+|-+++-.
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 22 2233444432222110 236999998763 3455567788888999998876643
No 270
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.47 E-value=0.0013 Score=66.57 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=73.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCC--CCCCccccccccCccccccCC
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP--TYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~--typrtyDl~H~~~~~~~~~~~ 625 (697)
.|||+|||-|--|-+|.+.+.+|-..=..+..-.....++-++||- ++.++--+. .+|..||+|-+..+|-...
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-- 108 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-- 108 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC--
Confidence 7999999999999999986655444333332222233355667874 333333222 2468999999877776553
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE---c--------CHHHHHHHHHHHhhcC-ceeEEee
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVIIR---D--------TARLIESARALTTRLK-WDARVIE 675 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~---d--------~~~~~~~~~~~~~~~~-W~~~~~~ 675 (697)
+-.+..|+-.|-.-++||||+++- + +.+..-+-.+|..-.. |++...+
T Consensus 109 --~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~ 168 (192)
T PF03848_consen 109 --RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYN 168 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEE
Confidence 456778899999999999999983 1 1233333344444443 9987653
No 271
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.47 E-value=0.0057 Score=65.78 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
...+||.+||.|..+..+++.......|+|+|.++.+++.|+++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 37999999999999999998753356799999999999999875
No 272
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.44 E-value=0.0018 Score=66.28 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=60.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc--ccccccccCCCCCCccccccccCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig--~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||+|||.|.++..|.+.. .+|+-++.. +.+..+-++ |+-. ...++.+-....+.+||+|.++.++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG-----ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC-----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 59999999999999987632 244444443 334333332 3311 12223222112236899999988877
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
... +...+|-++.|+|+|||.+++..
T Consensus 126 ~~~------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVP------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 543 34578999999999999999874
No 273
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.44 E-value=0.0026 Score=60.87 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhc-cCCCeEEEEeecCCCC-CchhhHhc----cCcc--c-ccccccccCCC-CCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAFPT-YPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~-~~~~vwvmnv~p~~~~-~~l~~i~~----RGli--g-~~~~~~e~f~t-yprtyDl~H~~ 616 (697)
-+|||+|||.|-+.-.|.+ .....=++. +|-. ..+..+-. .|+- = ...|+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~g---vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIG---VDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEE---EESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEE---EECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999999883 111222333 3333 34443333 3442 1 1233333 332 44789999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
..+... .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888433 44557889999999999999998765
No 274
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.43 E-value=0.0024 Score=68.43 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=62.9
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCcccccccccccC--CCCCCccccccccC
Q 005417 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAF--PTYPRTYDLVHAEG 617 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGlig~~~~~~e~f--~typrtyDl~H~~~ 617 (697)
...+.|+|+|||.|.++.++.+. .|-. +++-.|-+..+.. +-+.|+-.-+.-.+--| ..+| .+|++-.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-FPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-CCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 34679999999999999999873 3322 2333343433433 33446533222222222 1234 379987777
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++..|.. -....+|-++-|.|+|||.++|-|
T Consensus 224 ~lh~~~~----~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 224 ILYSANE----QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhcCCh----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7766641 122358889999999999999875
No 275
>PRK14967 putative methyltransferase; Provisional
Probab=96.41 E-value=0.0041 Score=63.64 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=68.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-.|||+|||.|.++..+... .. -+|+-+|-. ..+..+-+ .|+ .-+..|+.+.++ +.+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA--GA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCC
Confidence 37999999999998888752 21 123333322 33332222 233 122345555444 2689999997544
Q ss_pred ccccC--------------CC-CCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005417 620 SLESG--------------HR-HRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 620 ~~~~~--------------~~-~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
..-.. .. ..+.+..++-++-|+|+|||.+++- .+....+++.++.++-.|++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 32110 00 0112446777899999999999983 22223445555555556655443
No 276
>PRK04266 fibrillarin; Provisional
Probab=96.41 E-value=0.0091 Score=61.79 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=50.5
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchh----hHhcc-CcccccccccccC--CCCCCccccccccCc
Q 005417 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~----~i~~R-Glig~~~~~~e~f--~typrtyDl~H~~~~ 618 (697)
.|||+|||.|++...|.+.- ..|+.+-+-| .-|. .+-+| ++.-+..|-.++. ...+.+||.|=++..
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 69999999999999997621 1233332222 1121 22222 3344444544431 112456887643111
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. .+ ....+|-|+-|+|||||+++|
T Consensus 151 ~-p~-------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 151 Q-PN-------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred C-hh-------HHHHHHHHHHHhcCCCcEEEE
Confidence 0 00 112346799999999999999
No 277
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.37 E-value=0.019 Score=59.03 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+++|||.|.|.-+..|+=. .+...++-+|....-+.+. .+-+++ +.+...-++.+.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 579999999999988887622 2445689999987665443 344666 77777777777543222999998866
Q ss_pred cccccHHHHHHHHHHhccCCeEEEE
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
.+...++.=+...+|+||.+++
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchh
Confidence 3455677778899999998765
No 278
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.36 E-value=0.012 Score=66.02 Aligned_cols=138 Identities=10% Similarity=0.091 Sum_probs=83.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cccccccccc-CCCCCCccccccccCcc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEA-FPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~-f~typrtyDl~H~~~~~ 619 (697)
+|+|+|||.|.++.+|... .+- .+|+-+|-. ..+..+-+ .|+ .=+-.|+.+. ++. ...||+|-|+--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999888742 221 234444443 44443332 232 1223455443 221 2479999996654
Q ss_pred cccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCC
Q 005417 620 SLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 680 (697)
Q Consensus 620 ~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~ 680 (697)
.... +..+... +..++-+.-+.|+|||++++--..+.-++++++++...|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 2211 0000000 22566667789999999998655566778888888888876544445556
Q ss_pred CccEEEEEc
Q 005417 681 DERLLICQK 689 (697)
Q Consensus 681 ~~~~li~~K 689 (697)
.++++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 799998874
No 279
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.34 E-value=0.0053 Score=64.86 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=79.0
Q ss_pred CccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCch----hhhhhhhccCC--CeEEE
Q 005417 500 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG----GFNSALLEKGK--SVWVM 573 (697)
Q Consensus 500 ~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g----~Faaal~~~~~--~vwvm 573 (697)
+...|--|..+|..-.+.....+ +... ..+.--.|+|+|||+| +.|-.|.+... .-|..
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l---~~~~------------~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~ 133 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLL---IASR------------RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDV 133 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHH---HHhc------------CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCe
Confidence 34557778888887665544322 2100 0112357999999999 46666654211 12334
Q ss_pred EeecCCCC-CchhhHhccCcc-----------------------------------cccccccccCCCCCCccccccccC
Q 005417 574 NVVPTIGT-NHLPMILDRGFV-----------------------------------GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 574 nv~p~~~~-~~l~~i~~RGli-----------------------------------g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.|+-+|-. .-|..+- +|+- =..||-.+.-+ -+..||+|.|..
T Consensus 134 ~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crn 211 (264)
T smart00138 134 KILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRN 211 (264)
T ss_pred EEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEech
Confidence 55555544 3343322 2210 01244444322 137899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHH
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 655 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~ 655 (697)
+|.... .-....++-++-|+|+|||++++-....
T Consensus 212 vl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 212 VLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 876653 1223469999999999999999976543
No 280
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.0068 Score=58.51 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=56.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+..++|+|||.|-+.....-. ....+.|+|+.++.++.+... .+++.+.+++...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4578999999999987444332 345789999999999988654 35566778888888888899999998754
No 281
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.031 Score=58.12 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEE-EeecccCCC---CCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~LP---fpd~sFDlV~~~~~ll 358 (697)
+++.+||||+-||.||..++++| ...|+++|..-.++..-.+....+.. ...++..+. +. +..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence 46899999999999999999997 45799999999888777665554443 222333332 22 2678999876533
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhh--------hhhhHH-hhhhhhhhhhhhhccceEEe
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA--------FLRNKE-NQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~--------~lr~~e-~~~~W~~l~~la~~~~w~ll 418 (697)
. ...+|..+..+++|+|.++.-.-+....+ -.++.+ ....-..+..++...+|...
T Consensus 156 S----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 156 S----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred h----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 3 45799999999999999887654332211 112222 23344666777777788765
No 282
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.33 E-value=0.006 Score=64.00 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=77.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCC-CCCccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~t-yprtyDl~H~~~~~~ 620 (697)
.+|+|+|||.|.++-+|... .+- .+|+-+|-. ..+..+-+ -|+--+-.|+.+.++. +...||+|=++--+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~-~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA-LDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888752 221 133334432 33333222 2321133455544432 234699998765443
Q ss_pred cccC----------CCCCCC----------cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccC
Q 005417 621 LESG----------HRHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 679 (697)
Q Consensus 621 ~~~~----------~~~~c~----------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 679 (697)
.... ...++. +..++-...++|+|||.+++--..+...++..+.+...|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 2110 000111 2367778889999999999865555677888888888888888775543
No 283
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.30 E-value=0.0043 Score=63.37 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=60.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
--.|=|||||-|-.|+++-. +..|.-.-.|..+..=| +-|= ---|++. .+.|++=+ |+|+-.
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vt---acdi--------a~vPL~~--~svDv~Vf--cLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVT---ACDI--------ANVPLED--ESVDVAVF--CLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S----EEEEESS-SSTTEE---ES-T--------TS-S--T--T-EEEEEE--ES---S--
T ss_pred CEEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEE---EecC--------ccCcCCC--CceeEEEE--EhhhhC--
Confidence 34899999999999999853 23455555555433211 1110 0123333 78888655 565533
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEcCHHHH---HHHHHHHhhcCceeEEeee
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIEI 676 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~~ 676 (697)
=+..+.|.|..|||||||.++|-+-..-. +.-.+..+++-.+....|.
T Consensus 135 ---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 135 ---TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp ---S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ---CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 34558999999999999999997654443 3334566778888887753
No 284
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.30 E-value=0.0051 Score=68.45 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=72.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-----CchhhHhccCcc---ccccccc---ccCCCCCCccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFV---GVLHDWC---EAFPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGli---g~~~~~~---e~f~typrtyDl~H~ 615 (697)
..++|+|||.|.|..+|.... |= .|++=.+-. ....-+..+|+- -+..|-- +.|+. .++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~-P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~--~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN-PN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS--NSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC-CC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC--CceeEEEE
Confidence 479999999999999998632 21 133333332 222344556651 1223332 34443 79999997
Q ss_pred cCccccccCCCCC-CCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhc-Ccee
Q 005417 616 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 671 (697)
Q Consensus 616 ~~~~~~~~~~~~~-c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 671 (697)
... ..|...++| =-...+|-|+-|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 422 335433332 12257899999999999999986 6666666655554443 5554
No 285
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.26 E-value=0.0035 Score=63.85 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred eEEEecccCchhhhhhhhccCCC---eEEEEeecCCCCCchhhH----hccCc---ccccccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~---vwvmnv~p~~~~~~l~~i----~~RGl---ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.+++.|.+.-.+ |..+-+-| ..+..+ -+.|+ .=+..|..+.++. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 37999999999999998763222 33332222 222222 22343 1122344443333 2579999985
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc------------cccHHHHHhcCcCcEEEEE
Confidence 4332 2344566889999999984
No 286
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.029 Score=61.86 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHH----cCCCc-EEEeecccCCC--CC-CCCccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLP--YP-SLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A~e----rgl~~-~~~~~da~~LP--fp-d~sFDlV~~ 353 (697)
++.+|||+.++.|.=|.++++..-. ...|+++|.++.-++...+ .|+.. .+...|+..++ .+ .+.||.|++
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 4589999999999999999887432 2346999999877755543 36553 45556665554 22 235999985
Q ss_pred ----ccc-ccc------c--ccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 354 ----ARC-GVD------W--DQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ----~~~-llh------~--~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+.. .++ | .+. ..++|....++|||||.|+.++-....
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 221 121 1 111 125789999999999999999865543
No 287
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.23 E-value=0.015 Score=64.57 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=70.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEEeccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~~~~~ll 358 (697)
-+|||+-||+|..+..++.+......|+++|.++..++.+++. ++. +.+.+.|+..+- ...+.||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4899999999999999998722235699999999999877653 232 455555655432 1235799998653 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+..++..+.+.+++||++.++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234579999999999999999984
No 288
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.21 E-value=0.0035 Score=63.48 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCccc---cc-ccccccCCCCCCccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVG---VL-HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGlig---~~-~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||+|.+++.|.+. +..|..+-+.|.-....-.-+...|+-. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 36999999999999887642 1123333333221110001122345422 22 244444443 3689999986554
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. +.=|+-|+|+|||.+++-
T Consensus 153 ~~------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch------------hhHHHHHhcCcCcEEEEE
Confidence 32 223677999999999984
No 289
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.20 E-value=0.0019 Score=66.58 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHhhc-ccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh
Q 005417 508 TENWKTAVGNFWSLLS-PLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM 586 (697)
Q Consensus 508 ~~~w~~~v~~Y~~~l~-~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~ 586 (697)
.+.|...+..+.+... ..+.. .+++..+++|+|+|+|.|.|+++++.. .|=+ .++-.|-|..+..
T Consensus 73 ~~~f~~~m~~~~~~~~~~~~~~-----------~~d~~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~v~~~ 138 (241)
T PF00891_consen 73 AKRFNAAMAEYSRLNAFDILLE-----------AFDFSGFKTVVDVGGGSGHFAIALARA-YPNL--RATVFDLPEVIEQ 138 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HSTTTTSSEEEEET-TTSHHHHHHHHH-STTS--EEEEEE-HHHHCC
T ss_pred HHHHHHHHHhhhhcchhhhhhc-----------cccccCccEEEeccCcchHHHHHHHHH-CCCC--cceeeccHhhhhc
Confidence 4566666666654433 22211 234677899999999999999999974 5533 2344455544444
Q ss_pred Hhcc-CcccccccccccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCC--cEEEEEc
Q 005417 587 ILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPE--GWVIIRD 652 (697)
Q Consensus 587 i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~--G~~i~~d 652 (697)
+.+. .+--+=||. |.++|. +|++...+++..|.. +.|. .||--+=+.|+|| |.++|-|
T Consensus 139 ~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh~~~d--~~~~--~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 139 AKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLHDWSD--EDCV--KILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHHTTTEEEEES-T---TTCCSS-ESEEEEESSGGGS-H--HHHH--HHHHHHHHHSEECTTEEEEEEE
T ss_pred cccccccccccccH---Hhhhcc-ccceeeehhhhhcch--HHHH--HHHHHHHHHhCCCCCCeEEEEe
Confidence 4441 122233333 355566 999999999999973 3343 5899999999999 9999864
No 290
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.20 E-value=0.0028 Score=53.63 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=56.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh---ccCc---cccc-ccccccCCCCCCccccccccCcc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~---~RGl---ig~~-~~~~e~f~typrtyDl~H~~~~~ 619 (697)
+|+|+|||.|++...+.+ .+. .++.-.|.. +.+..+. +.+. +-.+ .|+...-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999985 111 223333322 2222221 1111 1111 22222221134789999998887
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... -....++-.+.+.|||||++++.
T Consensus 77 ~~~~-----~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLV-----EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehh-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6521 13346888889999999999986
No 291
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.20 E-value=0.034 Score=58.61 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeec
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 337 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 337 (697)
....+.+.+.+....+ ..|||||+|+|.+|..|++.+ ..++++|.++.+++..+++. .++.+...|
T Consensus 16 ~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 16 PNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecc
Confidence 4566677777765444 899999999999999999985 57899999999999888753 466777788
Q ss_pred ccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccC
Q 005417 338 SKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 377 (697)
Q Consensus 338 a~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKP 377 (697)
+..+..+. +.-..|+++-- ++. ...++..+...-+.
T Consensus 85 ~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 85 FLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred hhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 87776554 44556666633 221 23566666664343
No 292
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.19 E-value=0.034 Score=57.41 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCcEEEee
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAMIGSF 336 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~~~~~ 336 (697)
..+...++..+..+.. .+.-.++.+||-+|+.+|....++++--.....|++++.|+.. +..|++|. ++.-...
T Consensus 52 ~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~ 129 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILE 129 (229)
T ss_dssp -TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES
T ss_pred CchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeec
Confidence 4455556665543322 1222356899999999999999988763334568999999854 45666653 4433334
Q ss_pred cccCCC----CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 337 ASKQLP----YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 337 da~~LP----fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+. .| .--+..|+|++--+ ..+..+.++.++...||+||.++++..
T Consensus 130 DAr-~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DAR-HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TT-SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 543 33 11247999998633 223345688889999999999999854
No 293
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.07 E-value=0.0063 Score=55.05 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=53.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccc---ccc--ccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV---LHD--WCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~---~~~--~~e~f~typrtyDl~H~~ 616 (697)
.+|+|+|||.|.++..+.+. .+- .+|+-.|-. ..+..+ -..|+-.+ ..| |+.+ .-+.+||.|=+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARL-VPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 48999999999999999863 221 234444432 223221 12232111 112 2222 223579988664
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..... +..++-++-|+|+|||++++.
T Consensus 96 ~~~~~---------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGL---------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccchh---------HHHHHHHHHHHcCCCCEEEEE
Confidence 43322 237899999999999999974
No 294
>PRK06202 hypothetical protein; Provisional
Probab=96.06 E-value=0.0045 Score=63.55 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred eeEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhccCc---ccccccccccCCCCCCccccccccCccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.++..|.+.- +.-...+|+-+|-. +.+..+.++.- +-+...=++.++.-+.+||+|-|+.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 4689999999999988876310 00112356667765 66666655421 1111111234444358999999999887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.. +. .+..+|-||-|++| |.+++.|
T Consensus 141 h~~---d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLD---DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCC---hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 765 21 24468999999999 5566554
No 295
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.04 E-value=0.0035 Score=64.98 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=77.5
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccc--------cccCCCCCCccccccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDW--------CEAFPTYPRTYDLVHA 615 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~--------~e~f~typrtyDl~H~ 615 (697)
.-|.+.|+|||.| +||..+.. . -=+|+-+|-. .+|.++ .-+.--+||.- -+++..=+.+-|||-|
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae-~---~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAE-H---YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCC-cchHHHHH-h---hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 4679999999999 88877642 1 2267777766 777744 33333333333 3444444799999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCc-EEE---EEcCHHHHHHHHHHHhhcCce
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 670 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G-~~i---~~d~~~~~~~~~~~~~~~~W~ 670 (697)
..|+. =|+++..+-++-|||||.| .+. .+|+.-.+-++.++..+++|+
T Consensus 107 Aqa~H-------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAVH-------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhHH-------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 99874 3778889999999999999 222 355555556666666777765
No 296
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.03 E-value=0.005 Score=67.54 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=59.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccccccccccCCCCCCccccccccCccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.|+|+|||.|.++++|.+. .+-. .|+-+|.. .-|..+ -+.|+-+.++ +...++..+..||+|-++-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~-~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-SPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999999863 2311 12333332 222111 1223322221 223344345889999998877532
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. ...-....++-++-|.|+|||.++|-.
T Consensus 275 ~~-~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 275 IQ-TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cc-ccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 10 011234578999999999999998853
No 297
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.00 E-value=0.061 Score=55.68 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CcEEEeeccc-CCC-----CCCCCccEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFASK-QLP-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~da~-~LP-----fpd~sFDlV 351 (697)
++++||||.=||..+..++..-.....++++|++++..+.+.+ .|+ .+.+..+.+. .|+ .+.++||+|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4899999988888777776654445679999999988877643 233 2333333321 111 356899999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+. -+|-++-...+.++.++||+||.+++.-
T Consensus 154 Fv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 84 3445555678999999999999999864
No 298
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.00 E-value=0.043 Score=56.31 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=80.1
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----Cc
Q 005417 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PA 331 (697)
Q Consensus 256 ~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~ 331 (697)
|-.....+++..++.+.. ++.+||+||-|-|.....+.+.... .-.-++.++..++..+.-|- ++
T Consensus 83 Mm~WEtpiMha~A~ai~t---------kggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nV 151 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIST---------KGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENV 151 (271)
T ss_pred hhhhhhHHHHHHHHHHhh---------CCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccce
Confidence 333345677777777662 4579999999999998888776432 23557899999988887653 23
Q ss_pred EEEeecc-cCCC-CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 332 MIGSFAS-KQLP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 332 ~~~~~da-~~LP-fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+..+-- ..++ ++|+.||-|.---- -.+-++...+...+.|+|||+|.|-+--
T Consensus 152 iil~g~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 152 IILEGRWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred EEEecchHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3222211 1122 67889999985422 2344566678889999999999987643
No 299
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.96 E-value=0.077 Score=58.23 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||+=||.|.|+..+++.+.. .|.++|+++..++..++. ++. +...++|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 478999999999999999998744 399999999999877654 333 34567888888766579999998754
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.+...++....+.+++||.+.+-...+..
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 33457888899999999999998876543
No 300
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.95 E-value=0.016 Score=62.10 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccC-CC--CCCCCccEEEe
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~-LP--fpd~sFDlV~~ 353 (697)
..+|||+=|=||.|+.+.+..| ..+++.+|.|..+++.+++. ++ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999988775 45689999999999988764 33 33455555432 11 12468999998
Q ss_pred cccccc-----ccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 354 ARCGVD-----WDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh-----~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
---.+. ...+...++..+.++|+|||.++++.-..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 532221 11233568889999999999998876543
No 301
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.032 Score=56.93 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
++.+|+|+||-+|+++..+++.......|+++|+.+-- ....+.+.++|...-+ +....+|+|+|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 35899999999999999999875444458899986521 1123555556654432 344457999975
Q ss_pred ccc---ccccccH-------HHHHHHHHHhccCCeEEEEEeC
Q 005417 355 RCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~l---lh~~~d~-------~~~L~El~RvLKPGG~Lvis~p 386 (697)
..- -++.-|. ..++.-...+|+|||.|++-++
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 331 1121111 2456667789999999999876
No 302
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.0025 Score=61.95 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=45.4
Q ss_pred cccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCCChh
Q 005417 337 ASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQ 391 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~ 391 (697)
.....+|.++|.|+|.|.+++.|..-+. ..++++++|+|||||+|-++.|.....
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3456789999999999999977765433 469999999999999999999876553
No 303
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.89 E-value=0.007 Score=60.48 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=53.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCC-CccccccccCccccccCC
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typ-rtyDl~H~~~~~~~~~~~ 625 (697)
+|||+|||.|.+..+|.+. ..+ +++-+|.. ..+..+.++|+--+..|..+.++.++ ++||+|-+...|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 7999999999999999752 222 12222322 44545556675333444444333343 7999999998886554
Q ss_pred CCCCCcchhhhhhcccccC
Q 005417 626 RHRCSTLDIFTEIDRILRP 644 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP 644 (697)
+...+|-||-|++++
T Consensus 90 ----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ----NPEEILDEMLRVGRH 104 (194)
T ss_pred ----CHHHHHHHHHHhCCe
Confidence 244567777666554
No 304
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.87 E-value=0.0021 Score=66.23 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=92.5
Q ss_pred CCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCccc-ccccccccCC--CCCCccccccccC
Q 005417 542 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFP--TYPRTYDLVHAEG 617 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig-~~~~~~e~f~--typrtyDl~H~~~ 617 (697)
+.+.+|.++|+|||+|=++-+|.+. +=-+.=+|-. |-|-.+.|+|+-- .+|-=-..|. .=+.-+|||-+..
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~-----a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM-----ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH-----HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 3456999999999999999999862 1122334434 8899999999821 1111112244 3468899999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeee-----
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI----- 676 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~----- 676 (697)
+|.-. -.++.++.=..+.|.|||.|+++-.. .--..|+.+.++---+++.++-
T Consensus 197 Vl~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~ 270 (287)
T COG4976 197 VLPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRR 270 (287)
T ss_pred HHHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchh
Confidence 98744 46778999999999999999997221 1124566677776676654421
Q ss_pred ccC-C-CccEEEEEcc
Q 005417 677 ESN-S-DERLLICQKP 690 (697)
Q Consensus 677 e~~-~-~~~~li~~K~ 690 (697)
+.+ + ...+.|++|+
T Consensus 271 d~g~pv~G~L~iark~ 286 (287)
T COG4976 271 DAGEPVPGILVIARKK 286 (287)
T ss_pred hcCCCCCCceEEEecC
Confidence 112 2 4566777764
No 305
>PRK04457 spermidine synthase; Provisional
Probab=95.87 E-value=0.022 Score=60.12 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=74.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCC-CCchhhHhcc-Cccc-------ccccccccCCCCCCcccccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDR-GFVG-------VLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~-~~~l~~i~~R-Glig-------~~~~~~e~f~typrtyDl~H~~ 616 (697)
-++|||+|||.|+++.+|... .|- +.|+-++- +..+.++-+. ++.+ +..|--+-+...|.+||+|=++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 568999999999999888752 232 22333333 2333333332 1111 1123323334456789999765
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE---cCHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEc
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
. |+.... ........++-++-++|+|||.+++- .+...-+.++.+.....-.+.+...+.. ..-++++.|
T Consensus 144 ~-~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~-~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESH-GNVAVFAFK 216 (262)
T ss_pred C-CCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCC-ccEEEEEEC
Confidence 2 332110 01122357888999999999999972 3333333344454444433334333222 246777876
No 306
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.87 E-value=0.022 Score=54.37 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=59.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------cEEEeecccCCCCCCCCcc
Q 005417 283 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~-----~g~~~~sV~gvD~S~~ml~~A~ergl--~------~~~~~~da~~LPfpd~sFD 349 (697)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.- . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 457999999999999999988 3 45779999999998877765421 1 111111111111 144566
Q ss_pred EEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.. |-..+. ..+|+.+.+ |+-.+++..|.=
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 66644 434444 345555555 666666666643
No 307
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.79 E-value=0.0086 Score=60.80 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=59.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.|+.+|.+... .|+-+|.. +.+..+-++ |+-..++-....++.-+.+||+|.+..++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 35899999999999999986322 24444433 444444332 221112222222444457899999988886
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
++. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 653 13455777888888766665555443
No 308
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.76 E-value=0.014 Score=61.15 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCCCC
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRH 627 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~ 627 (697)
.|-|||||-|-.|..- ..+|--|-+|+++..=+.--| .+ -|+. .+|-|++-+ |+|+--
T Consensus 183 vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm---------~~--vPl~--d~svDvaV~--CLSLMg---- 240 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDM---------RN--VPLE--DESVDVAVF--CLSLMG---- 240 (325)
T ss_pred EEEecccchhhhhhcc---ccceeeeeeecCCCceeeccc---------cC--CcCc--cCcccEEEe--eHhhhc----
Confidence 6889999999888743 368999998888775222100 00 2333 488998654 677643
Q ss_pred CCCcchhhhhhcccccCCcEEEEEcCHHHHHHHH---HHHhhcCceeEEee
Q 005417 628 RCSTLDIFTEIDRILRPEGWVIIRDTARLIESAR---ALTTRLKWDARVIE 675 (697)
Q Consensus 628 ~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~---~~~~~~~W~~~~~~ 675 (697)
-++-+.+.|.+|||+|||.++|-+-......++ .-.+.|..++...+
T Consensus 241 -tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 241 -TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred -ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 466799999999999999999975544433333 33456777776665
No 309
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.74 E-value=0.011 Score=60.44 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=48.7
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhc----cCcccccccccccCCCCC--CccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~----RGlig~~~~~~e~f~typ--rtyDl~H~~~ 617 (697)
.+|||+|||+|.+++.|.+. +..|..+-+-| ..+..+-+ -|+-.+---....+..++ ..||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 47999999999999877642 01333333322 22222221 233111111122222222 6799999854
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc------------cchHHHHHhhCCCcEEEEE
Confidence 432 2334556689999999884
No 310
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.086 Score=55.83 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=78.9
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeec
Q 005417 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFA 337 (697)
Q Consensus 264 ~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~d 337 (697)
+..+..+|...++ .+|||-|.|+|+++..+++.-.++.++...|.++.-.+.|++. ++ ++.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 3456677777776 8999999999999999998766777899999998877777643 43 34454445
Q ss_pred ccCCCC--CCCCccEEEeccccccccccHHHHHHHHHHhccCCe-EEEEEeCC
Q 005417 338 SKQLPY--PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPL 387 (697)
Q Consensus 338 a~~LPf--pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG-~Lvis~p~ 387 (697)
.....| .+..+|.|+.-. +.|-.++--++.+||.+| +|+--.|+
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHH
Confidence 554444 467899997542 445567777888999866 66554454
No 311
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.73 E-value=0.063 Score=64.42 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc----c-ccccccccCCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----G-VLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli----g-~~~~~~e~f~typrtyDl~H~~ 616 (697)
+.|||++||+|+|+-++...+-. .|+-+|.. .-+..+-+ -|+- - +-.|..+.+..+.++||+|=++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 58999999999999999863211 24444543 33332222 2331 0 1223222222235789999886
Q ss_pred Cc-cccccCC----CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeee
Q 005417 617 GL-LSLESGH----RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 617 ~~-~~~~~~~----~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
-- |+.-... ...-....++-..=|+|+|||.+++......+....+.+..-.+++.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 43 2211000 000123467777789999999999976655555556677777888877753
No 312
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.70 E-value=0.008 Score=60.65 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=86.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCC-CccccccccCccccccCC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typ-rtyDl~H~~~~~~~~~~~ 625 (697)
-.|||.|||.|.+-++|.+. +.|=..-|= -.+..+.-..+||+-=+-+|.-+-++.|| .+||.|=.++-+.+..
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 36999999999999999984 666665442 12356778899999888889999999999 7999999988876654
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE------------------------------cCH----HHHHHHHHHHhhcCcee
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVIIR------------------------------DTA----RLIESARALTTRLKWDA 671 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------------d~~----~~~~~~~~~~~~~~W~~ 671 (697)
.-+.+|-|| ||=|.-.|++ |++ -.+...+++.+.+..++
T Consensus 90 ----~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 90 ----RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred ----HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 244789999 5557778874 232 33677778888887766
Q ss_pred EE
Q 005417 672 RV 673 (697)
Q Consensus 672 ~~ 673 (697)
.-
T Consensus 163 ~~ 164 (193)
T PF07021_consen 163 EE 164 (193)
T ss_pred EE
Confidence 53
No 313
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.62 E-value=0.025 Score=60.43 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---c-ccccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|... .+- .+|+-+|-. ..+.++-+ .|+- - +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~-~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYA-FPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 47999999999999999863 221 134444443 34433332 3542 1 2244444443 25899999863
Q ss_pred cccccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeE
Q 005417 618 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 672 (697)
Q Consensus 618 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 672 (697)
-+.... +..+... ...++-++-+.|+|||++++--.... ++++++.....|.-.
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 221100 0000011 23678888999999999998543333 677777776554433
No 314
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.047 Score=58.36 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccccccccccCCCCCCccccccccCccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
+|+|||||+|--|.+|... .+. .+|+-+|-. .-|.++ -.-|+.-++.-.+.-|+..+.+||+|=++--.-..
T Consensus 113 ~ilDlGTGSG~iai~la~~-~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE-GPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhh-CcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCC
Confidence 9999999999999999873 333 455555544 444433 23454222222223455544589998775432111
Q ss_pred c------------------CCCCCCCc---chhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCc-eeEEeeeccCC
Q 005417 623 S------------------GHRHRCST---LDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW-DARVIEIESNS 680 (697)
Q Consensus 623 ~------------------~~~~~c~~---~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W-~~~~~~~e~~~ 680 (697)
. + ...++ ..++-+..++|+|||++++.-....-+.++++.....+ ........-.+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~--g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVG--GGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred cccccChhhhccCHHHHHcc--CccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 0 1 11222 27788899999999999998776677888888888885 22222112234
Q ss_pred CccEEEEEc
Q 005417 681 DERLLICQK 689 (697)
Q Consensus 681 ~~~~li~~K 689 (697)
.+++.+.++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666554
No 315
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.59 E-value=0.14 Score=51.74 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCC-CCCCC--CccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~L-Pfpd~--sFDlV~~ 353 (697)
.+.++||+=+|+|.++...+.+|. ..++.+|.+...++..++. + ....+...|+... +-... .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 358999999999999999999974 4678999999988777654 3 2344444554422 22222 4999998
Q ss_pred cccccccc-ccHHHHHHH--HHHhccCCeEEEEEeC
Q 005417 354 ARCGVDWD-QKDGILLLE--VDRVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~-~d~~~~L~E--l~RvLKPGG~Lvis~p 386 (697)
--- ++.. -+....+.. -..+|+|+|.+++...
T Consensus 121 DPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 754 3321 111233333 5678999999999765
No 316
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=0.011 Score=63.15 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=70.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh-hHhccCcc----cccccccccCCCCCCccccccccCcccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP-MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~-~i~~RGli----g~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+|||+|||-|+++-++.+ .++|=|.-|.-..+. ...+ -|-++|+- -.++||...=.+ ||=|=+-+.|.+
T Consensus 75 ~lLDiGCGWG~l~~~aA~-~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDrIvSvgmfEh 149 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAE-EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDRIVSVGMFEH 149 (283)
T ss_pred EEEEeCCChhHHHHHHHH-HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cceeeehhhHHH
Confidence 799999999999999987 357766666554433 2222 46779996 447777665444 787877777776
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. .-...+++-=+.++|+|||-+++.
T Consensus 150 vg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 150 VG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 53 355668889999999999999974
No 317
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.50 E-value=0.099 Score=55.84 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCchHHHHHhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCcEEEeecccCCCCCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~-~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
+++|+=||||.=-+|..+.. +....+.|+++|.+++.++.+++- +....+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999998777666554 322456789999999999887531 2345677777776665556899999875
Q ss_pred cccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005417 356 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 356 ~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. ..+. .+-..+|..+.+.++||..+++..
T Consensus 201 l-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 L-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred h-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4 3322 244689999999999999999874
No 318
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.087 Score=59.69 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC---CCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp---d~sFDlV~~~ 354 (697)
+..+|||+=||.|.|+..|+++ ...|+|+|+++++++.|++. ++ ++.+..++++...-. ...||.|+.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 3479999999999999999976 46799999999999887643 43 467777777776532 3578999864
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
--. .--...+++.+. .++|-..+++|..+
T Consensus 370 PPR---~G~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 370 PPR---AGADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CCC---CCCCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 210 001124455444 46777888888754
No 319
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.40 E-value=0.013 Score=63.14 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=62.8
Q ss_pred eEEEecccCch--hhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccc-cccccCCCCCCccccccccCcccccc
Q 005417 547 RNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~-~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||+| +.||+++-. +.|...-+=|..-.++..-+-.-|+-.-+. ...+.++. ..||+|=|+=+.....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL~ 239 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVLL 239 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHHH
Confidence 49999999999 556777653 345544443332222222233344422111 02233343 7899999855554443
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCceeEEe
Q 005417 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 674 (697)
.++=++.+.|+|||++|++.-. +..++|.+..+. .|++...
T Consensus 240 ---------~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 240 ---------ELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---------HHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred ---------HHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 4666789999999999997321 223444444455 6665444
No 320
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.39 E-value=0.012 Score=59.93 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-..|||+|||.|-+..+|.+. .+- .+++-+|-. ..+..+-++ ++-=...|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 356999999999999999762 111 234444543 555555443 22111234344554 3899999999998876
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. .-.+..++-||-|++ +++++|.
T Consensus 119 ~----p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N----PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C----HHHHHHHHHHHHhhc--CcEEEEE
Confidence 4 234567889999998 5788874
No 321
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.39 E-value=0.013 Score=57.79 Aligned_cols=142 Identities=22% Similarity=0.331 Sum_probs=68.4
Q ss_pred CCCceeEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHhccCcc---cccccccccCCCCCCccccccc
Q 005417 542 PYNMVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~~RGli---g~~~~~~e~f~typrtyDl~H~ 615 (697)
+.+.-.+|||+||+-|||..++++.. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-|
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 34568999999999999999999854 33555666655333222222 2211 1112222333211257999999
Q ss_pred cCccccccC--CCCCCCcchhhh---hhcccccCCcEEEEE-----cCHHHHHHHHHHHhhcCceeEEeeecc---CCCc
Q 005417 616 EGLLSLESG--HRHRCSTLDIFT---EIDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDE 682 (697)
Q Consensus 616 ~~~~~~~~~--~~~~c~~~~~l~---E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~---~~~~ 682 (697)
+..+..-.. ..+--.+..++- =+-..|+|||.+|+. +..+++..++..=+ ++.++.... .+.|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~----~v~~~Kp~~sr~~s~E 173 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFS----KVKIVKPPSSRSESSE 173 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHH----HEEEEE-TTSBTTCBE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCe----EEEEEECcCCCCCccE
Confidence 885432210 000001111222 223569999988874 22344444444222 244444332 2357
Q ss_pred cEEEEEc
Q 005417 683 RLLICQK 689 (697)
Q Consensus 683 ~~li~~K 689 (697)
..+||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 7788764
No 322
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.39 E-value=0.018 Score=56.57 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=65.9
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---ccccccccccCCCCCCccccccccC
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|||+|||+|-.+.+|... .+-.. |+-+|-. .-+..+.+ -|+ --+.+|+.+.++ +..||+|=++-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~-~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR-GPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT-STCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred CCeEEEecCChHHHHHHHHHh-CCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 456999999999999999873 34433 2333332 33333322 232 234567777666 48999998865
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEE--EEcCHHHHHHHHHHHh
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTT 665 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i--~~d~~~~~~~~~~~~~ 665 (697)
-|..-. ......+..++-+.=++|+|||.++ ++.....-..++++..
T Consensus 107 P~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 543211 0012335678889999999999774 4544433333444433
No 323
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.37 E-value=0.014 Score=59.39 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=61.4
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccccccccccCCCCCCccccccccCccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.|+.+|.+. .. .|+=+|.. +.+..+.+|- +..-..-.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 468999999999999999863 21 33444443 4555554442 10001111222222347899998776665
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
++. ...+..++-++.|+++|++++.+...
T Consensus 131 ~~~----~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP----ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC----HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 542 23456789999999999888887543
No 324
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.31 E-value=0.024 Score=61.25 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=66.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|... .+. .+|+-+|-. ..+..+-+ .|+ |- +..|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999863 232 245555543 44443332 344 22 2345555554 36899999863
Q ss_pred cccccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhc
Q 005417 618 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 667 (697)
Q Consensus 618 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 667 (697)
-+.... +..+... ...++-+.-++|+|||++++--..+ .+++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 221110 0000001 2367888999999999999853222 33466655543
No 325
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.20 E-value=0.0069 Score=54.34 Aligned_cols=96 Identities=19% Similarity=0.100 Sum_probs=38.8
Q ss_pred EEeCCCCchHHHHHhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CcEEEeecccCC-C-CCCCCccEEEeccccc
Q 005417 288 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL-P-YPSLSFDMLHCARCGV 358 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~--~sV~gvD~S~---~ml~~A~ergl--~~~~~~~da~~L-P-fpd~sFDlV~~~~~ll 358 (697)
||||+..|..+..+++.--.. ..++++|..+ ...+..++.++ .+.+...+.... + +++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999988887642112 3689999988 33344443333 344555443321 1 33578999997643
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|-.+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 323444568899999999999999865
No 326
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.09 E-value=0.03 Score=59.89 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcE-EEeecccCC-C-CCCCCccEEEe--
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAM-IGSFASKQL-P-YPSLSFDMLHC-- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~-~~~~da~~L-P-fpd~sFDlV~~-- 353 (697)
+..+|||+.++.|.-+.++++.-.....+++.|.+..-+....+ .|+... ....|+... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 45789999999999999998874445679999999987765543 355443 333555544 1 23346999995
Q ss_pred --ccc-ccccccc---------H-------HHHHHHHHHhc----cCCeEEEEEeCC
Q 005417 354 --ARC-GVDWDQK---------D-------GILLLEVDRVL----KPGGYFVWTSPL 387 (697)
Q Consensus 354 --~~~-llh~~~d---------~-------~~~L~El~RvL----KPGG~Lvis~p~ 387 (697)
+.. .+...++ . .++|....+.+ ||||+++.++-.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 221 1111111 1 25789999999 999999999863
No 327
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.08 E-value=0.027 Score=56.97 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=71.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-----CchhhHhccCcccccccccccCC---C-C-CCccccccccC
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFVGVLHDWCEAFP---T-Y-PRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGlig~~~~~~e~f~---t-y-prtyDl~H~~~ 617 (697)
.+||+|||.|.|..+|....-+. |++=++-. ..+.-+..+||-.+.--.+.+.- . . |.+.|.||-..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 89999999999999998643333 33333332 34456667787333333333322 1 1 47888887632
Q ss_pred ccccccCCC--CCCCcc-hhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhc--CceeE
Q 005417 618 LLSLESGHR--HRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 672 (697)
Q Consensus 618 ~~~~~~~~~--~~c~~~-~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 672 (697)
- ..|-..+ +|..+. ..|-++-|+|+|||.+.++ |..+..+.+.+..... .++..
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 1232111 244443 7788999999999999985 7777777777776664 55544
No 328
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.03 E-value=0.057 Score=54.02 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc--ccccc-cccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--ig~~~-~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|+|+|||.|.++..+....... .|+-+|-. ..+..+- +.|+ +-+++ |-.+.++..+-.+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 369999999999988775321111 22223321 2222221 1233 11111 1111111111224554431
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcC
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 668 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~ 668 (697)
....+..++-++-|+|+|||++++-.. .+.+.++.+..+.+.
T Consensus 117 --------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 117 --------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred --------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 113456899999999999999998753 334455555555543
No 329
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.87 E-value=0.11 Score=57.85 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCCCccEEEeccccccccccHH--------------------------------------HHHHHHHHhccCCeEEEEE
Q 005417 343 YPSLSFDMLHCARCGVDWDQKDG--------------------------------------ILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 343 fpd~sFDlV~~~~~llh~~~d~~--------------------------------------~~L~El~RvLKPGG~Lvis 384 (697)
||+++.+++|++.+ +||..... .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 89999999999998 88874211 1233334567899999998
Q ss_pred eCCCC
Q 005417 385 SPLTN 389 (697)
Q Consensus 385 ~p~~~ 389 (697)
..+..
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 87653
No 330
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.78 E-value=0.0035 Score=55.76 Aligned_cols=93 Identities=26% Similarity=0.268 Sum_probs=56.0
Q ss_pred EEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----c-cc-ccccccccCCCCCCccccccccCc-cc
Q 005417 549 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VG-VLHDWCEAFPTYPRTYDLVHAEGL-LS 620 (697)
Q Consensus 549 vmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l-ig-~~~~~~e~f~typrtyDl~H~~~~-~~ 620 (697)
|||+|||.|....+|.+.-+.--...+.-.|-. ..|..+.++. + += +..|. +.++..-.+||+|=|+++ +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 799999999999999862100011345555544 5666565555 2 11 11222 223333369999999777 55
Q ss_pred cccCCCCCCCcchhhhhhcccccCCc
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEG 646 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G 646 (697)
+ - ..-.+..+|=++=|+|||||
T Consensus 80 ~-~---~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 H-L---SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp G-S---SHHHHHHHHHHHHHTEEEEE
T ss_pred C-C---CHHHHHHHHHHHHHHhCCCC
Confidence 5 3 44556789999999999998
No 331
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.74 E-value=0.027 Score=56.99 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=48.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc--ccc-ccccccCCCCC--Ccccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVL-HDWCEAFPTYP--RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli--g~~-~~~~e~f~typ--rtyDl~H~~ 616 (697)
..|||+|||+|.+++.|.+... .|+-++.. +-+..+-++ |+- -+. .|. +.++| .+||+|.++
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVT 151 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEc
Confidence 4799999999999987765211 23333322 223322221 331 111 121 22232 689999986
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..+.. +.-++-+.|+|||.+++.
T Consensus 152 ~~~~~------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAAPE------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCchh------------hhHHHHHhcCCCcEEEEE
Confidence 54432 233456899999999985
No 332
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.53 E-value=0.35 Score=49.47 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=72.4
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCC-CccEEEecccccc
Q 005417 287 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSL-SFDMLHCARCGVD 359 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~-sFDlV~~~~~llh 359 (697)
|.||||--|.+..+|++++ ....++++|+++..++.|++. ++. +.+..+|... +++.+ ..|.|+.+++.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999997 456789999999999888754 433 3444445322 23333 3788887765211
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005417 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
-....|.+....++..-.|++.-. .....++.+....+|.+..+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~--------------~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPN--------------THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEES--------------S-HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCC--------------CChHHHHHHHHHCCCEEEEe
Confidence 124567777777777667777533 22345677888889988754
No 333
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.50 E-value=0.02 Score=61.49 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------Cc--ccccccccccCCCCCCcc----c-c
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF--VGVLHDWCEAFPTYPRTY----D-L 612 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Gl--ig~~~~~~e~f~typrty----D-l 612 (697)
.+|||+|||.|.++..|++.-.. .-+|++.|-. .-|..+.++ ++ .++..|.++.++. |..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEE
Confidence 46999999999999999863111 2467888876 666666553 22 3556677665432 2333 2 3
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.+...|.... +-....+|-++=+.|+|||.+++.
T Consensus 142 ~~~gs~~~~~~----~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT----PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33333333322 223447899999999999999973
No 334
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.41 E-value=0.13 Score=52.22 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+++|||+|+|.|..+...+..|. ..+...|+.+...+.. ...++.+.+...+. -..+..||+|+...+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeeceec
Confidence 358999999999999888877763 3467778776655433 23344555543332 23677899999998855
Q ss_pred cccccHHHHHHHHHHhccC-CeEEEEEeCCCCh
Q 005417 359 DWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNP 390 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKP-GG~Lvis~p~~~~ 390 (697)
.+. ...+++. +.+.|+. |-.+++-+|...+
T Consensus 154 ~~~-~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHT-EADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cch-HHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 543 2345666 5555555 5555566665443
No 335
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.29 E-value=0.47 Score=52.77 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=83.6
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCce---------------------------
Q 005417 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLT--------------------------- 308 (697)
Q Consensus 256 ~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~--------------------------- 308 (697)
.+++.+..-+.++..+-...+ |. ....++|==||+|++....+-.+...
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 344555556666665544443 22 22589999999999987776553210
Q ss_pred ----e-------EEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc-cccccc--HH---
Q 005417 309 ----M-------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--DG--- 365 (697)
Q Consensus 309 ----~-------sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l-lh~~~d--~~--- 365 (697)
. .++|.|+++.+++.|+.. |+. +.|.++++..++-+-+.+|+|+|+--. .-.... .+
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 1 377999999999988743 554 667888998887554799999998431 111111 12
Q ss_pred -HHHHHHHHhccCCeEEEEEeC
Q 005417 366 -ILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 366 -~~L~El~RvLKPGG~Lvis~p 386 (697)
.+...+++.++--+.++|+..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 345566677777788888876
No 336
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.21 E-value=0.2 Score=53.19 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCC--cEEEeecccCCC--CC----CCCcc
Q 005417 283 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP--YP----SLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCG--tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~--~~~~~~da~~LP--fp----d~sFD 349 (697)
+.+..|||||| |-..+...++...+...|.-+|+.+..+..++.. ... ..++.+|..+.. +. .+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 57899999999 4445666766645667899999999888755432 233 456666654421 00 11222
Q ss_pred -----EEEeccccccccc---cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 350 -----MLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 350 -----lV~~~~~llh~~~---d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.|+...+ +|+.+ ++..++..+...|.||.+|+|+.....
T Consensus 148 ~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 3334444 66664 457899999999999999999987654
No 337
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.19 E-value=0.069 Score=50.11 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
++||||||.|.++..+++.+ ...+++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 334799999999998877653
No 338
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.14 E-value=0.041 Score=56.43 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=55.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccc--------------cccccccCCCCC----C
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGV--------------LHDWCEAFPTYP----R 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~--------------~~~~~e~f~typ----r 608 (697)
..|||.|||.|-.|.+|.+.+..|.-+=++|.--. + +.-+.|+-.. +.-+|--|-.++ -
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~-~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE-Q--FFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH-H--HHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 48999999999999999998778887777665221 0 1112232110 111222221111 2
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+||+|=...+|.+.. ...-..++-.|-|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~----~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP----EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 455554444443332 12223578889999999997444
No 339
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.06 E-value=0.14 Score=51.73 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.+.|+|+|+|.++...++. .-.|++++.++.....|.+. | .+..++.+|+....| ...|+|+|...--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 68999999999988777665 34589999999888888765 1 356677788887777 46899999754111
Q ss_pred cccc-HHHHHHHHHHhccCCeEEEE
Q 005417 360 WDQK-DGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 360 ~~~d-~~~~L~El~RvLKPGG~Lvi 383 (697)
.... .-.++..+...||-.+.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 22467777778888888773
No 340
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.02 E-value=0.16 Score=56.05 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 340 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~ 340 (697)
..|||+=||.|.++..|++. ...|+|+|.++++++.|++. ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 37999999999999999987 35699999999999888643 44 45666555443
No 341
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.93 E-value=0.069 Score=52.78 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=44.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCC-ccEEEec
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 354 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~s-FDlV~~~ 354 (697)
..|+|+.||.|..+..+++.. ..|+++|+++..++.|+.. |+ ++.+.++|..++. +..+. ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999873 4689999999999888754 44 4567777755432 22122 8999975
No 342
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.80 E-value=0.34 Score=52.39 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHH----HcCC---------------------CcEE-
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERGL---------------------PAMI- 333 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml---~~A~----ergl---------------------~~~~- 333 (697)
...+||==|||.|.++..|+..|+. +.|.+.|--|+ .++. ..+- ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 4467999999999999999988754 57778887775 2332 1110 0000
Q ss_pred --Ee--------------ecccCC---CCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhh
Q 005417 334 --GS--------------FASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 394 (697)
Q Consensus 334 --~~--------------~da~~L---Pfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~l 394 (697)
.. +|..+. +-..++||+|+..+. +.-..+.-..|..|..+|||||+++=..|....-..-
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 00 010000 011246999987754 5545556679999999999999999777754331110
Q ss_pred hh----HHhhhhhhhhhhhhhccceEEeeec
Q 005417 395 RN----KENQKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 395 r~----~e~~~~W~~l~~la~~~~w~ll~~~ 421 (697)
.. ....-..+.+..+++..+|+++.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 00 0112356778888999999998765
No 343
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.76 E-value=0.039 Score=57.47 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=67.5
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccccccccc----cCCCCC-CccccccccCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCE----AFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~~~~~e----~f~typ-rtyDl~H~~~~~~ 620 (697)
.|||+|||-|.++-.|...+ -+|.-.|.. ..+.++-.+.+ -|+.-+|.. .+-. . -+||.|=|..+..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-~~~~FDvV~cmEVlE 135 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG-----ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-AGGQFDVVTCMEVLE 135 (243)
T ss_pred eEEEecCCccHhhHHHHHCC-----CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-cCCCccEEEEhhHHH
Confidence 48999999999999999855 477777876 67777665444 233323321 1111 0 4799999988888
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+.. +...++.+..+.+||||-++++.-
T Consensus 136 Hv~------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVP------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 764 344699999999999999999753
No 344
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.71 E-value=0.67 Score=48.81 Aligned_cols=128 Identities=18% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|+|||||.=-++....... ....++++|++..++++... .+++..+...|...-+ +....|+++..-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-L 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-H
Confidence 36899999999999999887653 34589999999999987653 3556666666644433 3457999998766 5
Q ss_pred cccccH--HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhh-hhhhhhhhhccceEE
Q 005417 359 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR-WNFVRDFVENLCWEL 417 (697)
Q Consensus 359 h~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~-W~~l~~la~~~~w~l 417 (697)
+..+.. ...++-+.. ++ .=.+++|.|....-+ |.+..... -..++.++...+|..
T Consensus 182 p~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~g--R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLGG--RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHSTTHHHHHHHH-SC-ESEEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhcchHHHHHHH-hC-CCeEEEecccccccc--CccccccCHHHHHHHhcccCCcee
Confidence 544322 122332333 32 226677777543211 22222222 245677777788874
No 345
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.71 E-value=0.32 Score=53.55 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCcEEEeecccCC-CCCCCCcc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--------l~~~~~~~da~~L-Pfpd~sFD 349 (697)
+.++||=+|.|.|..+..+.+. ....+|+-+|.++.|++.++.. . ..+.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4578999999999999999876 2467899999999999988732 1 1233343343322 23446899
Q ss_pred EEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.++++.-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9986532 1111111 256777899999999999986544
No 346
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.60 E-value=0.2 Score=52.76 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=81.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC----CchhhHh----ccC--cccccccccccCCCCCCccccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL----DRG--FVGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~----~~l~~i~----~RG--lig~~~~~~e~f~typrtyDl~H~ 615 (697)
...|+|+|||.|.-+=+|.+...++=+.-| -.+.. .+-.+.+ ||- +=+=+..|+.++.. .+||+|=|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~V-Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGV-EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEE-EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEe
Confidence 889999999999877777653122322211 11111 1111111 221 12334567777776 57999999
Q ss_pred cCccccccCC------------CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEE
Q 005417 616 EGLLSLESGH------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 673 (697)
Q Consensus 616 ~~~~~~~~~~------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 673 (697)
+--|-.-... ...|.+++++-=--++|+|||++.+=-..+.+.++-++++++.|....
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 8765332210 134667777777889999999999998999999999999999998653
No 347
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.56 E-value=0.15 Score=57.62 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=53.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---hcc-Cccc----cccccccc-CCCCCCcccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GFVG----VLHDWCEA-FPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---~~R-Glig----~~~~~~e~-f~typrtyDl~H~~ 616 (697)
.+||||+||.||++.+|.+. .+ .-.|+-.|-. ..+..+ ++| |+-- +-.|..+. +..-+.+||.|-++
T Consensus 240 ~~VLDlcag~G~kt~~la~~-~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILEL-AP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 48999999999999988762 11 0123333333 333332 222 4310 11122111 10013689999864
Q ss_pred CccccccCCCC--CC-------C-------cchhhhhhcccccCCcEEEEE
Q 005417 617 GLLSLESGHRH--RC-------S-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~--~c-------~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
--.|....-++ .+ . -..+|-++=|+|||||.+|++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 32221100000 00 0 126888999999999999997
No 348
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.52 E-value=0.02 Score=51.63 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=55.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-------ccccccccccCCCCCCccccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-------VGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-------ig~~~~~~e~f~typrtyDl~H~ 615 (697)
.|||++||.|.|+.++++.. .-+++=+|-. ..+.++-. .|+ .|=+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHC----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998732 2233333322 11111110 111 3333344445554 88999999
Q ss_pred cCccccccCC--CCCCCcchhhhhhcccccCCcEEEE
Q 005417 616 EGLLSLESGH--RHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 616 ~~~~~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+--|...... ..+-....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8888653210 0112345778899999999999886
No 349
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.44 E-value=0.061 Score=55.87 Aligned_cols=132 Identities=13% Similarity=0.205 Sum_probs=67.4
Q ss_pred ceeEEEecccCchh----hhhhhhccCCCeEEEEeecCCCCCchhhHhccCc---cc-ccccccccCCCC-----CCccc
Q 005417 545 MVRNVLDMNAHFGG----FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGF---VG-VLHDWCEAFPTY-----PRTYD 611 (697)
Q Consensus 545 ~iRnvmDm~~g~g~----Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGl---ig-~~~~~~e~f~ty-----prtyD 611 (697)
.-++|||+|||+|. +|+++.. +-.|.++=+-|....-.-..+-.-|+ |- +..|..+.++.. ..+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 36789999998886 3444432 12344433322111100111222343 11 122333333321 25899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc---------C----H----HHHHHHHH----HHhhcCce
Q 005417 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------T----A----RLIESARA----LTTRLKWD 670 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---------~----~----~~~~~~~~----~~~~~~W~ 670 (697)
+|-++.-=..|. .++-++=|+|||||.+|+-+ . . .....+++ |...=+|+
T Consensus 147 ~VfiDa~k~~y~---------~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 147 FAFVDADKPNYV---------HFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred EEEECCCHHHHH---------HHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 998754433333 56667789999999999621 1 0 12334444 33344565
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005417 671 ARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K~ 690 (697)
+.+... .+.++|+.|+
T Consensus 218 ~~~lp~----gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI----GDGVTLCRRL 233 (234)
T ss_pred EEEEEe----CCccEEEEEe
Confidence 555532 3678888875
No 350
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.33 E-value=0.064 Score=58.33 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCccc--c-cccccccCCCCCCccccccccCcc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig--~-~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.|||.+||.|+|...+...+. +|+=.|.. ..+..+ -.-|+-. + ..|-. .++.-+.+||+|=++--|
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 799999999999654433222 23333332 222211 1124432 1 12222 233223689999886444
Q ss_pred ccccCC-CC--CCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCc
Q 005417 620 SLESGH-RH--RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 669 (697)
Q Consensus 620 ~~~~~~-~~--~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W 669 (697)
...... .+ ......+|-|+-|+|+|||++++--... .+++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321100 01 1224689999999999999988753322 144566777666
No 351
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.25 E-value=0.13 Score=52.40 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=31.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
-.+.|||||.|.+...|+.. ++..-+.|.++--..-++.++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 35899999999999999887 466778899886555444443
No 352
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.16 E-value=0.6 Score=47.52 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----------HHHHHHHcCC-CcEEEeecccCCCCCCCCccEEE
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~----------ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~ 352 (697)
..+|+|+=.|.|.++..+...-.....|+++-..+. +-..+++... +..........++ +.+..|+++
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence 489999999999999999876323334555433322 1122222211 1111111111222 223444444
Q ss_pred e--------ccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHH--hhhhhhhhhhhhhccceEEeeec
Q 005417 353 C--------ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE--NQKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 353 ~--------~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e--~~~~W~~l~~la~~~~w~ll~~~ 421 (697)
. ... +| .....++..++++.|||||.+++.++....-..+++.. ++-.-..+...++.-++.+..+.
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 3 322 23 33446899999999999999999987554311122221 12222334455666777766553
No 353
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.04 E-value=0.057 Score=55.61 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=57.3
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh-hHhccCccccc--------------ccccccCCCC---C-C
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P-R 608 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~-~i~~RGlig~~--------------~~~~e~f~ty---p-r 608 (697)
.|||.|||.|--|.+|.+.+..|.-+=++|.- +. ++-++|+.... .-+|.-+..+ + -
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~A----i~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELA----VEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHH----HHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 89999999999999999866655555444431 22 23456653221 1122222211 1 2
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+||+|-...+|.+.. ...-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~----~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP----EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 567776666655442 12234688999999999996443
No 354
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.81 E-value=0.13 Score=55.39 Aligned_cols=97 Identities=25% Similarity=0.357 Sum_probs=65.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccc-ccc-----ccCCCCCCccccccccCcc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~-~~~-----e~f~typrtyDl~H~~~~~ 619 (697)
=|.|||+|||-|-|.=.|+.. .+-.|+-+=|..- -.+|+-+-+-++|.-. -.. |..|. ..+||+|-|.|++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 479999999999999888864 4545555554433 3344333334443211 011 33455 6899999999998
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-+ |-+-.+.|.++=..|||||-+|+.
T Consensus 193 YH------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 74 445557889999999999999973
No 355
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.69 E-value=0.11 Score=54.90 Aligned_cols=90 Identities=23% Similarity=0.458 Sum_probs=61.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCch-hhHhccCc--ccccccccccCCCCCCccccccccCcccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHL-PMILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l-~~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+..++||+|||-|+--+.|... .=.|.-++..-.. ----+||+ +... +|.+. +..||+|-|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-----f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL-- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-----FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL-- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-----cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh--
Confidence 4678999999999998888531 1133334433222 12346887 4433 47643 4569999996665
Q ss_pred ccCCCCCCCcc-hhhhhhcccccCCcEEEEE
Q 005417 622 ESGHRHRCSTL-DIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~-~~l~E~dRiLRP~G~~i~~ 651 (697)
+||.-. .+|-+|-+.|+|+|.+|+.
T Consensus 162 -----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578755 6778999999999999983
No 356
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.23 Score=53.68 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=62.1
Q ss_pred ceeEEEecccCchhhhhhhhccC-CCeEEEEeecCCC-CCchhhHhc----cCcccccccccccCCCCC--Ccccccccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAE 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~-~~~l~~i~~----RGlig~~~~~~e~f~typ--rtyDl~H~~ 616 (697)
.-+||||+|||+|=+|-|.++.+ .+|. -+|- +-.+.++.| -|+--+.+.-+-.-++.| +.||+|=|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~-----g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVV-----GVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEE-----EecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 36899999999998876655421 1222 2221 123333333 111111122222222333 489999884
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCceeEEee
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~ 675 (697)
=+=.-. ..+.=++-|.|+|||++|++.-- +..+.|.+-..+=.|++.-+.
T Consensus 237 ILA~vl---------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 237 ILAEVL---------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hhHHHH---------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 321111 13445678999999999998632 123444554545567766553
No 357
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.34 E-value=0.21 Score=52.68 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEE------EEeecCCC-CCchhhHhcc----Ccccc-cccc-c-----ccCCCCCC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWV------MNVVPTIG-TNHLPMILDR----GFVGV-LHDW-C-----EAFPTYPR 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwv------mnv~p~~~-~~~l~~i~~R----Glig~-~~~~-~-----e~f~typr 608 (697)
=.||||.||+|--|=.+++. |=. -+|+-.|- +++|.+...| ||-.- ---| | .|||+ .
T Consensus 102 m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--D 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--C
Confidence 68999999999888777741 221 23333343 3677766555 44211 1123 2 35555 8
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+||+.--+.-.-.+. .++..|-|+-|+|+|||-|.+=+
T Consensus 177 s~D~yTiafGIRN~t------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999876543333222 36689999999999999988743
No 358
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.33 E-value=0.13 Score=58.39 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||||||.|+++.+|.+.-.+- ..|+-.|-. +.+..+-+ .|+- -+-.|..+....++.+||+|=++--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 579999999999998887521010 123333332 33333322 2431 1234444433345578999865432
Q ss_pred cccccC---------CCCCCCc-------chhhhhhcccccCCcEEEEE
Q 005417 619 LSLESG---------HRHRCST-------LDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~---------~~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 651 (697)
.|.... ..+.-.+ ..+|-++=|+|||||.+|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111100 0000111 24788889999999999975
No 359
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.19 E-value=0.24 Score=43.18 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred EEecccCchh--hhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-------cccccccccc-cCCCCC-Ccccccccc
Q 005417 549 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------FVGVLHDWCE-AFPTYP-RTYDLVHAE 616 (697)
Q Consensus 549 vmDm~~g~g~--Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-------lig~~~~~~e-~f~typ-rtyDl~H~~ 616 (697)
++|+|||.|. +.+.+.. ....+.. .+.. ..+.....+. +-.+..+... .++.-. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG--RGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCC--CCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 5555543 2223333 2222 2222222111 1233334433 133322 389999 76
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
.....+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~---~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL---P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC---C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 6555443 2 568999999999999999987543
No 360
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=92.10 E-value=0.22 Score=52.56 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=53.0
Q ss_pred EEEecccCchhhhhhhhccCC-CeEEEEeecCCCC-CchhhHhc----cCc--cccc-ccccccCCCCCCccccccccCc
Q 005417 548 NVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~-~~~~e~f~typrtyDl~H~~~~ 618 (697)
.||||+||.|+++.+|.+.-. .- .|+-.|-. .-+..+-+ -|+ |-++ +|- ..++.....||.|-++--
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAP 149 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCC
Confidence 599999999999987764200 11 24444443 33332222 243 1222 222 223332346999876433
Q ss_pred ccccc---CC------CCCCC-------cchhhhhhcccccCCcEEEEE
Q 005417 619 LSLES---GH------RHRCS-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~---~~------~~~c~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.|..- .. ...-. -..+|-++=++|||||++|++
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22210 00 00000 125888899999999999997
No 361
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.01 E-value=1 Score=49.54 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--HcCCC-----cEEEeecccCCCCC-CCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ERGLP-----AMIGSFASKQLPYP-SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~--ergl~-----~~~~~~da~~LPfp-d~sFDlV~~~ 354 (697)
.+.+|||+|.|+|.-+..+-.--..--+++-++.|+..-+..- ++++. ..-......+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4577999999999765555332111223445566665433321 22211 11111222344443 2367777766
Q ss_pred ccccccccc-H-HHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 355 RCGVDWDQK-D-GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d-~-~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.-+++.... + ...++.+..++.|||.|+|.+++..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 554443311 1 2378889999999999999998653
No 362
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.66 E-value=0.69 Score=50.83 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
++.+|+=+|+| .|..+..+++.- ..+|+++|.+++-++.|++-|....+...+.....--.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 34788888877 566788888742 3779999999999999999886655542232223222234999986522
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...+....+.||+||.+++....
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 35788889999999999998765
No 363
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.62 E-value=0.41 Score=48.96 Aligned_cols=134 Identities=21% Similarity=0.325 Sum_probs=85.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc----cccccccccc-------CCCCCCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF----VGVLHDWCEA-------FPTYPRTYD 611 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl----ig~~~~~~e~-------f~typrtyD 611 (697)
.||.+++|+|--|+++.. ..|-+ ---|.|-. +.++ -+-+-|+ ..+.-|-+.+ -+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 799999999987776664 24432 34677765 3323 2445665 2333333322 334678999
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE------------------------cC---HHHHHHHHHHH
Q 005417 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR------------------------DT---ARLIESARALT 664 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------d~---~~~~~~~~~~~ 664 (697)
.|-|..++.--. ....+-++-+.-|+|+|||.+++- |. ..-++.|.++|
T Consensus 105 ~i~~~N~lHI~p----~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHISP----WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhcC----HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 999988753211 112357899999999999999972 11 13367888999
Q ss_pred hhcCceeEEeeeccCCCccEEEEEc
Q 005417 665 TRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 665 ~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
.+-..+.... ++=-...++||++|
T Consensus 181 ~~~GL~l~~~-~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEED-IDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcc-cccCCCCeEEEEeC
Confidence 9877765432 12122588999997
No 364
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.50 E-value=0.72 Score=51.70 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=73.3
Q ss_pred ccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCcE-EEeecccCCC---CCCCCccE
Q 005417 279 FILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAM-IGSFASKQLP---YPSLSFDM 350 (697)
Q Consensus 279 l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~~-~~~~da~~LP---fpd~sFDl 350 (697)
+.|..+.+|||+.+-+|.=|.+++..--.+..|.+.|.+..-+.... +.|+... +...|...+| |+. +||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 34557789999999999877777654223456899998877765443 4466544 3455666555 555 8999
Q ss_pred EE----eccccccc-------cc----------cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005417 351 LH----CARCGVDW-------DQ----------KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 351 V~----~~~~llh~-------~~----------d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
|. |+...+.. .. -..++|......+++||+|+.++-...
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 98 44411111 00 013578889999999999999986543
No 365
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=91.30 E-value=0.25 Score=51.39 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=61.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc---c----Ccccc-cccccccCCCCCCcccccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD---R----GFVGV-LHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~---R----Glig~-~~~~~e~f~typrtyDl~H~~ 616 (697)
=++|||+|||.|+|.-.|++. .+ -.|+-+|.. ++|---+. | +..-+ +.+|-+-.+ |++-|+
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~--ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~D 145 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK--GA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFD 145 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc--CC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------Cceeee
Confidence 358999999999999999873 21 123333332 33332111 1 22111 235555432 444444
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEE-------------------EcCH---HHHHHHHHHHhhcCceeEEe
Q 005417 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-------------------RDTA---RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-------------------~d~~---~~~~~~~~~~~~~~W~~~~~ 674 (697)
-.|.... .+|-.|.++|+| |.+|+ +|+. .+++++...+.++.|++.-.
T Consensus 146 vsfiS~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 146 VSFISLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred EEEeehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 3343222 356677777777 66663 3432 56777888888888886544
No 366
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.20 E-value=0.41 Score=54.09 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=55.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---hcc-Cc-c-cccccccccCCCC-CCccccccccCcc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GF-V-GVLHDWCEAFPTY-PRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---~~R-Gl-i-g~~~~~~e~f~ty-prtyDl~H~~~~~ 619 (697)
.|||+|||.|+++.+|.+.... -.|+-.|-. ..+..+ ++| |+ + =+.+|-.+....+ +.+||.|=++--.
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 6999999999999998863211 123333433 333333 222 33 1 1223433322222 3689999854432
Q ss_pred ccccC-CCC--------C-------CCcchhhhhhcccccCCcEEEEEc
Q 005417 620 SLESG-HRH--------R-------CSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 620 ~~~~~-~~~--------~-------c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... .++ . .....+|-+.=++|+|||.+++..
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22100 000 0 011257888999999999999863
No 367
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.63 E-value=0.31 Score=55.74 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=41.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeeccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASK 339 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~ 339 (697)
..+||+-||||.++..+++. +..|.|+++++..+..|... |+ ++.|.++-++
T Consensus 385 k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 78999999999999999876 56799999999999888653 33 4556655333
No 368
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.08 E-value=0.25 Score=53.89 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=46.9
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHh----ccCcc---cccccccccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMIL----DRGFV---GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~----~RGli---g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.+++.|.+.-.. --| +-++-. .-+..+- ..|+- =+..|-.+..+. ...||+|.++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~V---vgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLV---VSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEE---EEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 37999999999999988752111 012 222222 2222221 23431 112232222222 24699998742
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-.. .+.-.+-|.|+|||.+++-
T Consensus 158 g~~------------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 GVD------------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred chH------------HhHHHHHHhcCCCCEEEEE
Confidence 221 2333456789999998884
No 369
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.91 E-value=0.5 Score=49.14 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=72.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCC--CCchhhHhccCc--cccc-ccccccCCCCC-C-ccccccccCcc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--TNHLPMILDRGF--VGVL-HDWCEAFPTYP-R-TYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~--~~~l~~i~~RGl--ig~~-~~~~e~f~typ-r-tyDl~H~~~~~ 619 (697)
..+++||||.|.|-++|...+=.+-..-|=+... -.-+.-|-+.|| |-++ +|=-+-+..++ . +.|-|+- .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 4899999999999999987432232222222221 144556777887 4444 22233344443 3 7888776 45
Q ss_pred c-cccCCCC--CCC-cchhhhhhcccccCCcEEEEE-cCHHHHHH-HHHHHhh
Q 005417 620 S-LESGHRH--RCS-TLDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 666 (697)
Q Consensus 620 ~-~~~~~~~--~c~-~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~-~~~~~~~ 666 (697)
. .|...+| |-- -...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3 3554334 333 337788899999999999996 55555555 5554444
No 370
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.43 E-value=2.9 Score=44.14 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH--HHHHH--------cCCCcEEEeecccCC---CCCCCC-cc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLE--------RGLPAMIGSFASKQL---PYPSLS-FD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml--~~A~e--------rgl~~~~~~~da~~L---Pfpd~s-FD 349 (697)
..+||++|+|+|..+...+... ...+...|...... +.... .|..+.+..++-... .+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4679999999998777776642 34456666654332 22211 122233322221111 111122 99
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+++.|.++ ....+.++.-+...|-.+|.+++..+..
T Consensus 165 lilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999444 5566788999999999999777776643
No 371
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.39 E-value=0.68 Score=47.50 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=53.2
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHH-HHHc---CCCcEEEeecccCCC-------C-CCCCc
Q 005417 284 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQL-TLER---GLPAMIGSFASKQLP-------Y-PSLSF 348 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~-A~er---gl~~~~~~~da~~LP-------f-pd~sF 348 (697)
++.|+|+|.=.|..+..+++. -.....|.++|+....... +.+. .-.+.+.+++..... . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 489999999998877766542 1134679999995433322 2222 135566666654332 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 349 DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+|+- .+ .|..++..+.|+....++++|+|+++.|..
T Consensus 113 vlVil-Ds-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 113 VLVIL-DS-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEEE-SS-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred eEEEE-CC-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 34443 33 555567778888899999999999997754
No 372
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=89.21 E-value=1.2 Score=47.08 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----C-c----cccc-ccccccCCCCCCccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-F----VGVL-HDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----G-l----ig~~-~~~~e~f~typrtyDl~ 613 (697)
-++||++|||.|+++..+++. .++- +|+-++-. +.+..+-+. | + +-+. .|-.+-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 458999999999999888752 2222 23333322 222221110 1 0 1111 12212122335789999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
=++.... ... ....-....+-.+-|+|+|||.+++.
T Consensus 150 i~D~~~~-~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDP-VGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCC-CCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 7654321 110 00111234556788999999999986
No 373
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.20 E-value=2.1 Score=47.30 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=65.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----C-CC-CCCCccEEEecc
Q 005417 284 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----L-PY-PSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----L-Pf-pd~sFDlV~~~~ 355 (697)
..+||.+|||. |..+..+++.. ....+++++.+++.++.+++.+ ...+....... + .+ ....+|+|+-.-
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 47899999987 88888888762 1235889999999999998873 12222111110 1 12 234699998642
Q ss_pred cc--------------ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CG--------------VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~l--------------lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ++-..+....+.++.+.|+|+|.+++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 01112345688999999999999998754
No 374
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.09 E-value=3.8 Score=42.15 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=72.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCcEEEeec
Q 005417 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFA 337 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~d 337 (697)
.+...++..+..+.. .+.-..+.+||=+|+-+|....+++.-- ....+++++.|+.+. ..|.+|. ++.-...|
T Consensus 56 p~RSKLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~D 132 (231)
T COG1889 56 PRRSKLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILED 132 (231)
T ss_pred cchhHHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cceeeecc
Confidence 333444444433222 2233456899999999999999988752 234589999998764 4555542 22222234
Q ss_pred ccCCC----CCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005417 338 SKQLP----YPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 338 a~~LP----fpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ +.| +--+..|+|++--+ .++. +-+..++...||+||+++++.-
T Consensus 133 A-~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 133 A-RKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred c-CCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 3 233 11245899887533 2333 4578889999999998887753
No 375
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=89.02 E-value=0.51 Score=53.52 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCC-CCCccccccccCc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPT-YPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~t-yprtyDl~H~~~~ 618 (697)
+||||+||.||.+.+|.+.-.+- -.|+-.|-. .-|..+-+ .|+- -+.+|... ++. .+.+||.|=++--
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDAP 316 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECCC
Confidence 69999999999988776521010 134444544 44443322 2541 22234432 231 2367999876433
Q ss_pred cccccCCCCC----C-----C-------cchhhhhhcccccCCcEEEEE
Q 005417 619 LSLESGHRHR----C-----S-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~~~~~----c-----~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-|....-+.+ . . -..+|-+.=+.|+|||.+++.
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221100000 0 0 125677888999999999986
No 376
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=88.98 E-value=0.02 Score=51.93 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=43.9
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCCCCcc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL 193 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C~~~~ 193 (697)
.+|||.|++.++.++..|+.+..-|. +++++.. |++......++.++.+++++.+...+
T Consensus 33 ~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~l~ 91 (102)
T cd04789 33 ANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIARKQ 91 (102)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888 7777766 44443344555666677776666544
No 377
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=88.75 E-value=0.73 Score=52.36 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=53.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc---ccccccccccCCCCCCcccccccc--
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE-- 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl---ig~~~~~~e~f~typrtyDl~H~~-- 616 (697)
..||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+ -..|+ --+.+|.....+ +.+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcCC
Confidence 469999999999887765410000 023334433 333322 22354 122234333222 2579998753
Q ss_pred --Ccccc-------ccCCCCCCCc-------chhhhhhcccccCCcEEEEEc
Q 005417 617 --GLLSL-------ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 --~~~~~-------~~~~~~~c~~-------~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... |.. ....+ ..+|-++=|+|||||.+++..
T Consensus 328 csg~g~~~r~p~~~~~~--~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKL--TPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22111 110 00111 158889999999999999974
No 378
>PLN03075 nicotianamine synthase; Provisional
Probab=88.72 E-value=0.56 Score=50.67 Aligned_cols=141 Identities=12% Similarity=0.131 Sum_probs=73.4
Q ss_pred ceeEEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchh-hHh--ccCccc----ccccccccCCCCCCccccccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP-MIL--DRGFVG----VLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~-~i~--~RGlig----~~~~~~e~f~typrtyDl~H~ 615 (697)
.-+.|+|+|||-|++.|.++... ...-+.|+=.......+. -.+ +.|+=. ..+|--+..+ -...||+|-|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 45889999999998865544210 122233332221111111 111 234411 1122223211 1267999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---HHHHHHHHHHhhcCceeEEeeeccCC-CccEEEEEccc
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESARALTTRLKWDARVIEIESNS-DERLLICQKPF 691 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~~~~~~~~W~~~~~~~e~~~-~~~~li~~K~~ 691 (697)
. .+..+. +-.-..+|-.+=|.|||||++++|--. .++-.+-....-=.|+....-+-.++ -.-++|.+|+-
T Consensus 202 ~-ALi~~d----k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGMD----KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-cccccc----cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 8 443331 122347889999999999999999521 11111110111117887766544443 46688888864
No 379
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.61 E-value=1.4 Score=47.60 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--cE
Q 005417 260 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--AM 332 (697)
Q Consensus 260 ~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~~ 332 (697)
...|+..+++++...... ....-++||||+|..-.-..|..+- ...+++|.|+++..++.|++. ++. +.
T Consensus 82 R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 468888999988754430 1124689999999875543443331 256799999999999998753 232 22
Q ss_pred EEeec-ccC----CCCCCCCccEEEeccc
Q 005417 333 IGSFA-SKQ----LPYPSLSFDMLHCARC 356 (697)
Q Consensus 333 ~~~~d-a~~----LPfpd~sFDlV~~~~~ 356 (697)
+.... ... +-.+++.||+.+|+--
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EEEcCCccccchhhhcccceeeEEecCCc
Confidence 32211 111 1223468999999966
No 380
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=88.47 E-value=0.28 Score=47.78 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=35.0
Q ss_pred cccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005417 600 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 600 ~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.+|.-+.+||+|=+...+..+. +....|-||-|+|+|||.+++-|
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 344554347999998876665443 34578999999999999999865
No 381
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.38 E-value=2.1 Score=41.41 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=49.4
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-C-CCCCccEEEecccccccc-----ccH---HHHHHHHHH
Q 005417 310 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDWD-----QKD---GILLLEVDR 373 (697)
Q Consensus 310 sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-f-pd~sFDlV~~~~~llh~~-----~d~---~~~L~El~R 373 (697)
.|.+.|+-+.+++.++++ ++ ++.+...+-+++. + +.+.+|+|+.+...+.-. ..+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 378999999999877755 33 3555554544444 2 335899999886644322 122 268999999
Q ss_pred hccCCeEEEEEeCCC
Q 005417 374 VLKPGGYFVWTSPLT 388 (697)
Q Consensus 374 vLKPGG~Lvis~p~~ 388 (697)
+|+|||.+.+....-
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999988654
No 382
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.32 E-value=2.2 Score=45.13 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEecccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~~l 357 (697)
..+||..|+| .|..+..+++.. ...++.++.++...+.+++.++...+..-+ ... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 4688888877 477777777752 244788899999998887777543222110 000 123457998875422
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999997654
No 383
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=88.10 E-value=0.35 Score=47.85 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=52.7
Q ss_pred ceeEEEecccCch--hhhhhhhccCCCeEEEEeecCCCCCchh---hHhcc------C-cccccccccccC--CCC-CCc
Q 005417 545 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLP---MILDR------G-FVGVLHDWCEAF--PTY-PRT 609 (697)
Q Consensus 545 ~iRnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~~~l~---~i~~R------G-lig~~~~~~e~f--~ty-prt 609 (697)
.-++||++|||.| |.++|.+. ....|+-+|.+..++ .-.++ + +--.-.+|.++. ... ++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhcc-----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 4579999999888 77777761 112444455443333 22222 1 234456897744 111 368
Q ss_pred cccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 610 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 610 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
||+|-|+.|+-... ..+.++-=++++|.|+|-+++.
T Consensus 120 ~D~IlasDv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYDEE------LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S-GG------GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccchHH------HHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999865432 2345666689999999998874
No 384
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=87.81 E-value=2.5 Score=45.67 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=60.5
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEee--cccCCCCCCCCccEEEeccccccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~--da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+||=+||| .|.++..+++.- -...++++|.+++.++.+++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 4788888886 455666666551 122578899999999999887754332110 11111111235899875522
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+....+.|++||.+++...
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467888899999999998764
No 385
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=87.57 E-value=1.1 Score=45.21 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=66.3
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC----Cchh-hHhccCccc----ccccccccCCCCCCccccccccCc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLP-MILDRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~----~~l~-~i~~RGlig----~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+|||.|||-|.+--.|++..-+- -++=+|=. ...+ ++-.+|+-- .-.|--.| ...+.-||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~---~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS---KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC---CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 89999999999998888633111 01111111 1122 233345421 11122222 233467999999888
Q ss_pred cccccC--CCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhc
Q 005417 619 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 667 (697)
Q Consensus 619 ~~~~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 667 (697)
|....- ....-.+.-++==++++|+|||.|+|..=.-..+++.+.-..-
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 876531 0011122345666899999999999987665666655544443
No 386
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.21 E-value=3.6 Score=47.84 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc---------CCC----------
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP---------- 342 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~---------~LP---------- 342 (697)
.+.+|+=+|||. |..+...++.- ...|.++|.+++-++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999996 44555555541 23699999999999999887654221111000 010
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 343 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 343 fpd--~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.+ +.+|+|+.... ..-.+.+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999997744 32222343346999999999999887654
No 387
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=87.20 E-value=1.6 Score=48.00 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHH-HH---------HHcCCCcEEEee-
Q 005417 283 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQ-LT---------LERGLPAMIGSF- 336 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---------------g~~~~sV~gvD~S~~ml~-~A---------~ergl~~~~~~~- 336 (697)
+.-+|+|+||..|..+..+... ..+..+|.-.|.-..--. .. ... .+..+..+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 4568999999999988776543 112345666665322111 00 011 22333222
Q ss_pred --cccCCCCCCCCccEEEecccccccc
Q 005417 337 --ASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 337 --da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+...=-||+++.|+++++.+ +||.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-
T ss_pred CchhhhccCCCCceEEEEEech-hhhc
Confidence 22222389999999999988 8885
No 388
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=86.79 E-value=1 Score=48.49 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccCC--CCCCCCccEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L--Pfpd~sFDlV 351 (697)
++++||=||-|.|.+....+++ -....+.-+|+....++..++- +..+.+..+|.-.+ ..+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5789999999999999888888 4566788888888877766542 22333333343222 1346899999
Q ss_pred EeccccccccccH----HHHHHHHHHhccCCeEEEEEeCC
Q 005417 352 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. -...+.. +.++..+.+.||+||+++...-.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 97643 2222221 34677899999999999987643
No 389
>PRK01581 speE spermidine synthase; Validated
Probab=86.64 E-value=1.4 Score=49.14 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=55.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc--------cC-c----c-cccccccccCCCCCCcc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD--------RG-F----V-GVLHDWCEAFPTYPRTY 610 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~--------RG-l----i-g~~~~~~e~f~typrty 610 (697)
.-++||++|||.|+.+..+++. .++-.+=+|-.+. .-+.++-+ +| + + -++.|-.+-...-++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4579999999999998888862 2232222232222 22222221 11 1 0 11222222222224679
Q ss_pred ccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 611 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 611 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
|+|=++- .........+---...+-.+-|.|+|||.+++...
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998863 22111000111112466788999999999998754
No 390
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.53 E-value=0.45 Score=47.00 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCCccEEEecccccccc----cc---H---HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 345 SLSFDMLHCARCGVDWD----QK---D---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 345 d~sFDlV~~~~~llh~~----~d---~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++||.+.|..+..|.. .| + ..++.++.++|||||.|+++.|.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 36899999987744432 11 1 378999999999999999999865
No 391
>PRK00811 spermidine synthase; Provisional
Probab=86.51 E-value=0.57 Score=50.05 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=53.8
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc------Cc-----cc-ccccccccCCCCCCcccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR------GF-----VG-VLHDWCEAFPTYPRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R------Gl-----ig-~~~~~~e~f~typrtyDl 612 (697)
.-++|||+|||.|+++..+++. .++-.+=+|=.+. ..+.++-+. |+ +- +..|-.+-..+-+.+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3578999999999999998862 2333222222222 222222111 11 11 112211112222468999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|=++. +..+.. ...---...+-++-|+|+|||.+++.
T Consensus 154 Ii~D~-~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDS-TDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 97642 222210 00001134566889999999999986
No 392
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=86.02 E-value=0.68 Score=48.52 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=63.7
Q ss_pred EEEecccCchhhhhhhhccCCC--eEEEEeecCCCCCchhhHh-------ccCcccccccccccC---CCCCCccccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMIL-------DRGFVGVLHDWCEAF---PTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~--vwvmnv~p~~~~~~l~~i~-------~RGlig~~~~~~e~f---~typrtyDl~H~ 615 (697)
++|.+|||.|.--=-|++.+.+ +-||.. +. +++-+-+.- .|. -...+|-+.+= |.-+-+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666654333 444432 11 112221111 122 23333433322 222389999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
-.++|... .-.|..++-.+-|+|+|||.+++||=
T Consensus 151 IFvLSAi~----pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIH----PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccC----hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999985 35588899999999999999999963
No 393
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=85.66 E-value=1.5 Score=49.66 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=58.9
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc--c-ccccccccC---CCCCCcccccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAF---PTYPRTYDLVHAE 616 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli--g-~~~~~~e~f---~typrtyDl~H~~ 616 (697)
.||||+||.||++.+|.+.-.+- -.|+-.|-. .-+..+-+ -|+- - +-.|-.+.. +..+.+||.|=++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 69999999999998887520000 023333433 33333322 2331 1 112221111 1223689988753
Q ss_pred CccccccCC-CC--------CCC-------cchhhhhhcccccCCcEEEEEc----CHHHHHHHHHHHhh
Q 005417 617 GLLSLESGH-RH--------RCS-------TLDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 666 (697)
Q Consensus 617 ~~~~~~~~~-~~--------~c~-------~~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~~ 666 (697)
--.|....- ++ ... -..+|-++=|+|||||.+|+.. ..+-.+.|+.+++.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 221110000 00 011 2377889999999999999863 22334445554443
No 394
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.62 E-value=1.8 Score=49.79 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHhcc-ccccccccCCCEEEEeCCCCchHHHHHhh---cCCceeEEEEecCCHHHHHHHHHcC-----CCc
Q 005417 261 EDYSHQIAEMIGLR-NESNFILAGVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTLERG-----LPA 331 (697)
Q Consensus 261 ~~y~~~l~~lL~l~-~~~~l~~~~~~~VLDIGCGtG~~a~~La~---~g~~~~sV~gvD~S~~ml~~A~erg-----l~~ 331 (697)
..|.+.+.+.+..+ +. . .......|+=+|+|-|-+.....+ .-...+.+++++-++.++-..+.+. -.+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd-~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V 423 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPD-E-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV 423 (649)
T ss_pred HHHHHHHHHHHHhhCcc-c-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee
Confidence 45555665555433 22 0 111245688899999987654433 2234678999999988876555443 356
Q ss_pred EEEeecccCCCCCCCCccEEEeccccccccccH--HHHHHHHHHhccCCeEEEEE
Q 005417 332 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 332 ~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis 384 (697)
.+...|+..++-|..+.|++++... =.+.++. ...|.-+-+.|||.|..+=+
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSELL-GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSELL-GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEEeccccccCCchhhccchHHHhh-ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 6777899999866789999998643 3344443 47899999999999877643
No 395
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.39 E-value=0.46 Score=43.96 Aligned_cols=37 Identities=19% Similarity=0.608 Sum_probs=27.5
Q ss_pred CccEEEecccccccc-----ccH-HHHHHHHHHhccCCeEEEEE
Q 005417 347 SFDMLHCARCGVDWD-----QKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 347 sFDlV~~~~~llh~~-----~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
.||+|+|..+ .-|+ ++. ..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999876 3332 222 46899999999999999995
No 396
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=85.04 E-value=0.043 Score=49.80 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=41.0
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCCCCc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQE 192 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C~~~ 192 (697)
.+|||.|++.|+.++..|..+..-|. +++++.. |++.......+.++.+.+++.+...
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~-------~~~~~~~~~~l~~~~~~l~~~i~~l 90 (102)
T cd04775 33 EANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG-------CLAQPHVQAILEERLQSLNREIQRL 90 (102)
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999988888 6777765 4433323344455556666655543
No 397
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.95 E-value=2.7 Score=42.30 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=80.7
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCch--hhhhhhhccCCCeEEEEeecCCCC--
Q 005417 506 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 581 (697)
Q Consensus 506 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~-- 581 (697)
...+.|.+.+-+-...+. .+. .... +++|+|+|-| |.--|++-++. +|+-.++.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~---------------~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLP---------------DFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS----------------CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhc---------------cCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCch
Confidence 446788877766665443 221 1111 6999999865 33334442221 23334432
Q ss_pred --Cchh-hHhccCc--ccccccccccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC---
Q 005417 582 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--- 653 (697)
Q Consensus 582 --~~l~-~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--- 653 (697)
+=|. ++-+=|| +=++|...|. +.++..||+|=| |.=+.+..++--+-+.|+|||.++.-.-
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----------RAVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE----------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe----------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555677 6688888888 777899999987 1334555666667889999999988543
Q ss_pred HHHHHHHHHHHhhcCceeEEe
Q 005417 654 ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 654 ~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.+.++++++-.+.+.++....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeee
Confidence 455555666666666665544
No 398
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=84.02 E-value=1.5 Score=47.77 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=52.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-c------cccccc-cccCCCCCCccccccccC
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-V------GVLHDW-CEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-i------g~~~~~-~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.+. +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3799999999999999987433 44555544 55555544421 0 011111 112233358899998888
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEE
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
++.++. . -.+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---H-HHHHHHHHHHHhh-cCCEEEE
Confidence 876654 1 1122344445443 4565544
No 399
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=83.87 E-value=4.1 Score=43.67 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=88.3
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cch
Q 005417 506 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL 584 (697)
Q Consensus 506 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l 584 (697)
-+|+.|-+.|-.=.+..+ - .+ +. .++|.|||.|.-+-+|+. ..+ ---|.-+|-. .-+
T Consensus 128 pETEE~V~~Vid~~~~~~--~-~~--------------~~--~ildlgtGSGaIslsll~-~L~--~~~v~AiD~S~~Ai 185 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSE--H-SK--------------HT--HILDLGTGSGAISLSLLH-GLP--QCTVTAIDVSKAAI 185 (328)
T ss_pred ccHHHHHHHHHHHHhhhh--h-cc--------------cc--eEEEecCCccHHHHHHHh-cCC--CceEEEEeccHHHH
Confidence 478899888865332221 1 01 11 799999999999999986 233 1111222221 223
Q ss_pred hhHhc-------cCccccccc--ccccCCCCC---CccccccccCcc--cccc----------------CCCCCCC--cc
Q 005417 585 PMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVHAEGLL--SLES----------------GHRHRCS--TL 632 (697)
Q Consensus 585 ~~i~~-------RGlig~~~~--~~e~f~typ---rtyDl~H~~~~~--~~~~----------------~~~~~c~--~~ 632 (697)
.++-| -|-|++.|. --+.|-+|| .+||+|=++--. +.-. ..+..|. +.
T Consensus 186 ~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 186 KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 33333 455888876 455666666 789998876432 2111 0001111 11
Q ss_pred hhhhhhcccccCCcEEEEE-----cCHHHHHHHHHHHhhcC-ceeEEeeeccCCCccEEEEEc
Q 005417 633 DIFTEIDRILRPEGWVIIR-----DTARLIESARALTTRLK-WDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 633 ~~l~E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~-W~~~~~~~e~~~~~~~li~~K 689 (697)
.+..=.-|.|+|||++++. +...++..+.....--+ |.+.++. +-...+++++..+
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~-Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVS-DFAGRPRFVIIHR 327 (328)
T ss_pred HHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheee-cccCCcceEEEEe
Confidence 4555567999999999985 33455555544333333 5555542 3334567766544
No 400
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=83.85 E-value=1.2 Score=49.95 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=66.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc-c----ccccccccCCCC---CCccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G----VLHDWCEAFPTY---PRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli-g----~~~~~~e~f~ty---prtyDl~ 613 (697)
++|||++||+|+|+-+.+..+. -.|+-+|.. ..+..+-+ -|+- . +..|..+....+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 5799999999999855432211 123333433 23322211 1331 1 112332222222 2579999
Q ss_pred cccCcc-ccccCC--CCCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcCceeEEee
Q 005417 614 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 614 H~~~~~-~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
=++--+ +..+.. .......+++.-.-++|+|||+++.-.. .+..+.+.+-+..-..++++.+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 887543 211100 0012344566667799999999998432 4556666666766666776664
No 401
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=83.77 E-value=4.3 Score=44.17 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
+..++|.=||.|..+..+++.- ....++|+|.++.+++.++++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 3789999999999999999863 237799999999999999875
No 402
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=83.30 E-value=8.3 Score=44.63 Aligned_cols=105 Identities=21% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCC-----CCCCcc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPY-----PSLSFD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPf-----pd~sFD 349 (697)
..+|+|-.||+|.+.....+.- .....++|.|........|+.. ++. +.+...+...-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 3589999999999866654431 1125689999999998888753 444 2334444333332 336799
Q ss_pred EEEecccc--ccccc---------------------cH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCG--VDWDQ---------------------KD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~l--lh~~~---------------------d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|+++.-. -.|.. .. ..++..+...|+|||+..|..+..
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99987432 11111 01 357899999999999777766543
No 403
>PHA01634 hypothetical protein
Probab=83.29 E-value=6.2 Score=37.83 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCc-EEE--eecccCCCCCCCCccEEE
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA-MIG--SFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~-~~~--~~da~~LPfpd~sFDlV~ 352 (697)
...+|+|||++-|..+.+++-+|. -.|.+++.++...+..++. +.. .+. ......++-.-+.||+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCCCcceEE
Confidence 458999999999999999998874 4689999999998888763 221 111 011123443345688776
No 404
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=83.27 E-value=0.48 Score=52.00 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=35.5
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE--cCHHHHHHHHH
Q 005417 603 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESARA 662 (697)
Q Consensus 603 f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~ 662 (697)
|++-.+.||+|=|--.+.---. ..-....+|--+-..|||||+||.. |...+++++++
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 3432369999988555432110 2223446788899999999999986 66666566655
No 405
>PLN02476 O-methyltransferase
Probab=82.80 E-value=1.5 Score=46.99 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred ceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCcc---c-ccccccccCCCC-----CCcccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---G-VLHDWCEAFPTY-----PRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGli---g-~~~~~~e~f~ty-----prtyDl 612 (697)
+-++||++|+++|..+.+|... +-.|.++=.-|....-.-..+-+-|+- = +..+-.+-++.+ +.+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 4689999999999999888751 112333332221111111122233431 1 111222222222 357999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHHH----HHhhcCceeEEeee
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----LTTRLKWDARVIEI 676 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~ 676 (697)
|-.+.-=.. ...++-+.=++|||||.+|+-+- ......+++ ++..=+++..+.-.
T Consensus 198 VFIDa~K~~---------Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKRM---------YQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHHH---------HHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 887543222 33566666689999999987311 111123333 44455577666532
Q ss_pred ccCCCccEEEEEcc
Q 005417 677 ESNSDERLLICQKP 690 (697)
Q Consensus 677 e~~~~~~~li~~K~ 690 (697)
.+.++|++|.
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 2678888874
No 406
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=82.30 E-value=0.26 Score=48.98 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=44.6
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCch--hhhhhccccccccccCCCCcc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNES--RNLALGYSNGDEVDRHCGQEL 193 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~--~~~~~~~~r~~~~er~C~~~~ 193 (697)
..+|||.|++.|+.++..|..+...|. +++++.. |++.. .....+.++++++++++...+
T Consensus 33 ~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~-------ll~~~~~~~~~~L~~~~~~l~~ei~~L~ 94 (172)
T cd04790 33 SESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS-------LLQQPGDDATDVLRRRLAELNREIQRLR 94 (172)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH-------HHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999889 7888877 43322 122345667777777777644
No 407
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.80 E-value=2.6 Score=38.56 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCccEEEeccccccccccHHH
Q 005417 293 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARCGVDWDQKDGI 366 (697)
Q Consensus 293 GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----P-fpd~sFDlV~~~~~llh~~~d~~~ 366 (697)
|.|.++..+++... ..|+++|.++.-++.+++.|....+.. ....+ . ..+..+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~-~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDY-SDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEET-TTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccc-cccccccccccccccccceEEEEecC-------cHH
Confidence 45788888887732 678999999999999998874333321 11110 1 23357999974422 146
Q ss_pred HHHHHHHhccCCeEEEEEeCCC
Q 005417 367 LLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 367 ~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+.+...+|+|||.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8999999999999999987654
No 408
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.02 E-value=5.2 Score=44.40 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCce---eEEEEecCCHHHHHHHH---HcCC--CcEEEeecccCCC---------CCC
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLT---MCIANYEASGSQVQLTL---ERGL--PAMIGSFASKQLP---------YPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~---~sV~gvD~S~~ml~~A~---ergl--~~~~~~~da~~LP---------fpd 345 (697)
++.+|||+.+-+|+=++.|.+..... ..+++.|.+..-+.... .+-. ...+...++...| ...
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~ 234 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQ 234 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhh
Confidence 55899999999999998888763211 25888999876554332 2211 1222222222222 334
Q ss_pred CCccEEEecc-c----ccc---------cccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 346 LSFDMLHCAR-C----GVD---------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 346 ~sFDlV~~~~-~----llh---------~~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..||-|+|-- | .+. |... .-.+|..-.++||+||.+|.|+-..+.
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 5799998721 1 010 1100 124788899999999999999865443
No 409
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=80.90 E-value=8.5 Score=43.08 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc---EEEeecccCCC-CCCCCccEEEecc
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA---MIGSFASKQLP-YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~---~~~~~da~~LP-fpd~sFDlV~~~~ 355 (697)
.-+|||.=+|+|.=+.+++........|+..|++++.++..++. ++.. .+...|+..+= ...+.||+|=.--
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899999999998888887722356799999999998877653 4443 44455554432 2467899996431
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...+..+|....+.+|.||+|.++..
T Consensus 130 -----fGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 -----FGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -----CCCccHhHHHHHHHhhcCCEEEEecc
Confidence 23456799999999999999999864
No 410
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.85 E-value=9.1 Score=40.61 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+||-+||| .|..+..+++.. ...++.++.+++.++.+.+.+....+.........-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 4788888987 677666666652 2457888888888888876663322211110000001246898875422
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeC
Q 005417 363 KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEECC
Confidence 12467888999999999987653
No 411
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.79 E-value=9.5 Score=41.18 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.+.+||=.|+| .|.++..+++.. ...+++++.+++-++.+++.|....+. .... ..+.+|+++-...
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-----
Confidence 34789988975 444555566542 235788888888889998877543322 1111 1245887654322
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|++||.+++...
T Consensus 233 --~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 --AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --cHHHHHHHHHhhCCCcEEEEEec
Confidence 12478889999999999988764
No 412
>PRK03612 spermidine synthase; Provisional
Probab=80.57 E-value=3.2 Score=48.29 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=60.7
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc---------Cc----cc-ccccccccCCCCCCccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR---------GF----VG-VLHDWCEAFPTYPRTYD 611 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R---------Gl----ig-~~~~~~e~f~typrtyD 611 (697)
-++|||+|||.|+.+..+++. .+|=.+=+|=.|. .-+..+-+. ++ +- +..|=.+-....+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 468999999999999888762 2221111122221 122222110 00 11 11121111223457899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc-----CHHHHHHHHHHHhhcCce
Q 005417 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD 670 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~ 670 (697)
+|-++- .........+=--..++-++-|+|+|||.+++.. ..+...++.+..++....
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 998862 2221100000001135557789999999999953 234445555555555443
No 413
>PHA03411 putative methyltransferase; Provisional
Probab=80.15 E-value=1.8 Score=46.43 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
..|||+|||.|.|+.+++.. .+- .+|+=+|-. ..+..+-++ ..--+..|-.+... +++||+|=++--|....
T Consensus 66 grVLDLGcGsGilsl~la~r-~~~--~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR-CKP--EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES--NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc--cCCCcEEEEcCCccccC
Confidence 36999999999998888652 111 234444443 444444332 11111222222111 36899999988776522
Q ss_pred C--CCC--C---------C-CcchhhhhhcccccCCcEEEE
Q 005417 624 G--HRH--R---------C-STLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 624 ~--~~~--~---------c-~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. ++. + | .+...+-+.-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 1 001 1 1 135677888999999998775
No 414
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=79.96 E-value=3 Score=43.33 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=90.7
Q ss_pred CCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-----ccccccccccCCCCCCccccccc
Q 005417 542 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-----VGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-----ig~~~~~~e~f~typrtyDl~H~ 615 (697)
+....|+|.|+|||.|---+-|.. .-|.=+ |.=.|+. +-|--+-+|+. .|=+++||-.-+ .|||-+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~-RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfa 98 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLAR-RWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFA 98 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHH-hCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhh
Confidence 345799999999999987777765 233322 2334443 66667777875 688999997766 599999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEE--cCH--HHHHHHHHHHhhcCceeEEeeec--------------
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTA--RLIESARALTTRLKWDARVIEIE-------------- 677 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~--~~~~~~~~~~~~~~W~~~~~~~e-------------- 677 (697)
+-.|.-.-. |--.+..++ --|+|||++-++ |+. ..-.-|++.|+..-|.....+.-
T Consensus 99 NAvlqWlpd--H~~ll~rL~----~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 99 NAVLQWLPD--HPELLPRLV----SQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhccc--cHHHHHHHH----HhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 988865442 222233333 358999999997 322 22345677777777776554311
Q ss_pred --cCCCccEEEEEcccccc
Q 005417 678 --SNSDERLLICQKPFFKR 694 (697)
Q Consensus 678 --~~~~~~~li~~K~~~~~ 694 (697)
..-..+|=||.+.|-.+
T Consensus 173 lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 173 LLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HhCcccceeeeeeeecccc
Confidence 01136778888887654
No 415
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.89 E-value=20 Score=35.49 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=72.5
Q ss_pred eCCCCchHHHHHhhcCCceeEE--EEecCCHHHH----------HHHHHcCCCcEEEeecccCCC----CCCCCccEEEe
Q 005417 290 IGCGYGSFGAHLFSKELLTMCI--ANYEASGSQV----------QLTLERGLPAMIGSFASKQLP----YPSLSFDMLHC 353 (697)
Q Consensus 290 IGCGtG~~a~~La~~g~~~~sV--~gvD~S~~ml----------~~A~ergl~~~~~~~da~~LP----fpd~sFDlV~~ 353 (697)
||=|.=+|+..|+++-.....+ +..|..++.. +..++.|+.+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 5667777888888762212333 4456554433 2333445555543 4666665 35689999998
Q ss_pred cccccccc-----cc-------HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEee
Q 005417 354 ARCGVDWD-----QK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419 (697)
Q Consensus 354 ~~~llh~~-----~d-------~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~ 419 (697)
++-..... .+ ...+++.+.++|+++|.+.|+-..... ...|+- +.+++..++.+..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~i-~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWNI-EELAAEAGLVLVR 149 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------CccccH-HHHHHhcCCEEEE
Confidence 86411100 01 125788899999999999998653321 356775 5777777776653
No 416
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=79.72 E-value=1.6 Score=40.49 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecC
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 316 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~ 316 (697)
....-.|||||+|.+..-|.+.|+.. .|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPG---WGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCc---ccccc
Confidence 34679999999999999999888664 56665
No 417
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.58 E-value=11 Score=38.16 Aligned_cols=93 Identities=24% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-------CCCCCCccEEEec
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-------PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-------Pfpd~sFDlV~~~ 354 (697)
...+||-+|+|. |..+..+++.. ...+.+++.++...+.+++.+....+ +.... ....+.+|+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 347899999985 66666666652 25688889988888887766532222 11111 1124579999865
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.. . ...+..+.+.|+++|.++.....
T Consensus 209 ~~------~-~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VG------G-PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CC------C-HHHHHHHHHhcccCCEEEEEccC
Confidence 32 1 14577788899999999976543
No 418
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=79.55 E-value=2.5 Score=47.66 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=61.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc---ccccccccccCCCCC---Cccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYP---RTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl---ig~~~~~~e~f~typ---rtyDl~H~ 615 (697)
..|||++||+|.|+..|.+....| +-++.. .-+..+- ..|+ --+..|..+.++.++ .+||+|-.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V-----~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSV-----VGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEE-----EEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 369999999999999998633333 333332 2222221 1233 112334333333322 46888765
Q ss_pred cCccccccCCCCCCCc-chhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEe
Q 005417 616 EGLLSLESGHRHRCST-LDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~-~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
+- .|-.+ ..++-++.+ |+|++.++++-++..+.+--++...-.|++...
T Consensus 369 dP---------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 369 DP---------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWV 418 (431)
T ss_pred Cc---------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEE
Confidence 22 22232 234434444 889999999977777655554444445765443
No 419
>PLN02366 spermidine synthase
Probab=79.43 E-value=3.6 Score=44.78 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=53.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC------CchhhHhccCc----cc-ccccccccCCCC-CCcccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT------NHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~------~~l~~i~~RGl----ig-~~~~~~e~f~ty-prtyDl 612 (697)
.-++|||+|||.|+.+..+++. .+|..+=+|=.|.. ..++.+ ..|+ +- +..|=-+-.... ++.||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3678999999999999999862 23433222322221 112211 1111 11 111211111222 368999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|-++. +..... ...---..++-.+-|.|+|||.++.+
T Consensus 169 Ii~D~-~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGP-AQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98753 332210 00000124667889999999999875
No 420
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.23 E-value=11 Score=41.37 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC---------CCCCCCccEEEe
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---------Pfpd~sFDlV~~ 353 (697)
.+.+||=+|+|+=.+...+..+.+-...|..+|.++.-++.|++-|..+.......... -+....||+.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 34899999999644444444443456679999999999999999775544332221101 123345888875
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005417 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
... .+..++.....+|+||.+++.....
T Consensus 249 CsG-------~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 249 CSG-------AEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred ccC-------chHHHHHHHHHhccCCEEEEeccCC
Confidence 433 2346666788999999988887654
No 421
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=78.74 E-value=1.1 Score=45.96 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=72.3
Q ss_pred ceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCc---cccc-ccccccCCCC-----CCcccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPTY-----PRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGl---ig~~-~~~~e~f~ty-----prtyDl 612 (697)
+-++||.+|+++|==|.+|.+. +-.|+++-+-|....-.-..+-.-|+ |=+. .|..+-+++. +.+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5789999999998666666531 23456655544332211122333454 2222 3344444432 358999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-------------HH---HHHHHHHHHhhcCceeEEeee
Q 005417 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------AR---LIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-------------~~---~~~~~~~~~~~~~W~~~~~~~ 676 (697)
|-.+.-=+.|. .++-..=++|||||.+|+-+. .+ +-+-.+.|...=+.++.+..+
T Consensus 125 VFiDa~K~~y~---------~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 125 VFIDADKRNYL---------EYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEESTGGGHH---------HHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred EEEcccccchh---------hHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 98866433333 444455589999999998532 11 122223344444566666532
Q ss_pred ccCCCccEEEEEcc
Q 005417 677 ESNSDERLLICQKP 690 (697)
Q Consensus 677 e~~~~~~~li~~K~ 690 (697)
.+.++|++|+
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 3678998884
No 422
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=78.51 E-value=6.2 Score=40.32 Aligned_cols=107 Identities=8% Similarity=-0.019 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC------CCCCccEE-E
Q 005417 283 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY------PSLSFDML-H 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPf------pd~sFDlV-~ 352 (697)
.++.|+|+|.-.|..+..++.. ..+...|.++|++-..++.+..+-..+.+..++...... ..+.+--| +
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 3589999999988877666543 225567899999877766655544455666555443321 11223233 3
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005417 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|..+ -|..+..-+.|+-+.++|.-|-|+++.+-+.+.
T Consensus 149 ilDs-dHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 149 ILDS-DHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EecC-CchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 4444 555555566778889999999999998876654
No 423
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.50 E-value=1.5 Score=46.94 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcE------------EEeeccc---CCC--CCC
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM------------IGSFASK---QLP--YPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~------------~~~~da~---~LP--fpd 345 (697)
...+|||+|||.|.-.......+. .++...|.+.+.++.-.--.+.+. +...... .+- +..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468999999999998888777652 456777777766521111000000 0000000 011 111
Q ss_pred -CCccEEEeccccccccccHHHH-HHHHHHhccCCeEEEEE
Q 005417 346 -LSFDMLHCARCGVDWDQKDGIL-LLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 346 -~sFDlV~~~~~llh~~~d~~~~-L~El~RvLKPGG~Lvis 384 (697)
..||+|.++...+. .+....+ +......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~-~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYS-IDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhC-cchhhhhHhhhhhhcCCccchhhhh
Confidence 27888888877443 2223333 55666778888887764
No 424
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.48 E-value=33 Score=35.83 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=73.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EEeecccCCCCC-CCCccEEEecccc
Q 005417 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGSFASKQLPYP-SLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~~da~~LPfp-d~sFDlV~~~~~l 357 (697)
.++.||||--|.+..+|.+.+ ....+++.|+++..++.|.+. ++.-. +..+|. -.++. +..+|+|+..+..
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred CceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCc
Confidence 349999999999999999886 456688999998888877543 33222 333343 12233 4489999877651
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
= .-....|.+-...|+-==+|++. |+.+. ..++.++....|++..+
T Consensus 96 G---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 96 G---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAE 141 (226)
T ss_pred H---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeee
Confidence 1 11245677777777644455553 32221 13466677777877654
No 425
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.32 E-value=11 Score=40.32 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec---ccCCCCCCCCccEEEeccccc
Q 005417 284 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA---SKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d---a~~LPfpd~sFDlV~~~~~ll 358 (697)
..+||-.|||. |..+..+++. |. ..+++++.++...+.+++.+....+. .. ...+....+.||+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVN-LARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEc-CCchhhhhhhccCCCccEEEECCC--
Confidence 47888888874 6666666664 32 14788888888888777766432221 11 1112212235899985432
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 241 -----~~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -----APAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEEec
Confidence 12467888999999999987543
No 426
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.28 E-value=5.8 Score=42.20 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=48.2
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC--CCCccEEEecc
Q 005417 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCAR 355 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfp--d~sFDlV~~~~ 355 (697)
+|+|+-||.|.+..-+.+.|+. .+.++|.++..++..+..... .+...|...+... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCC
Confidence 5899999999998888887743 478999999998877665322 2334455554422 34699999764
No 427
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=78.03 E-value=3 Score=42.92 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.1
Q ss_pred hhhhhhcccccCCcEEEEEcCH
Q 005417 633 DIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 633 ~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
.+|.|.-=+||+||.++.-.++
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 5788889999999999876444
No 428
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=77.80 E-value=52 Score=34.80 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCcEEEeecccCCCCC---CCCccEEEecc
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYP---SLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~LPfp---d~sFDlV~~~~ 355 (697)
.+++||=||=..-...+..+.. ....|+.+|+++..+++ |.+.|+++.....|.. -|+| .++||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR-~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR-DPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT-S---TTTSS-BSEEEE--
T ss_pred cCCEEEEEcCCcHHHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc-ccCCHHHhcCCCEEEeCC
Confidence 3588999995554332222222 34679999999999854 4566888877777753 3333 37999999874
Q ss_pred ccccccccHHHHHHHHHHhccCCe-EEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEe
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG-~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll 418 (697)
. +. .+-...++......||.-| ..+++--... .....|..++.....++.-+.
T Consensus 121 P-yT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~--------~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 121 P-YT-PEGLKLFLSRGIEALKGEGCAGYFGFTHKE--------ASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SS-HHHHHHHHHHHHHTB-STT-EEEEEE-TTT----------HHHHHHHHHHHHTS--EEE
T ss_pred C-CC-HHHHHHHHHHHHHHhCCCCceEEEEEecCc--------CcHHHHHHHHHHHHHCCcCHH
Confidence 4 22 1223468888888999755 3333322111 123567777777667766554
No 429
>PHA03412 putative methyltransferase; Provisional
Probab=77.73 E-value=2.3 Score=44.70 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=51.3
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCC--CCccccccccCccccc
Q 005417 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY--PRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~ty--prtyDl~H~~~~~~~~ 622 (697)
.|||+|||.|.|+.++...- .+. .+|+-++-. +.+..+. +.+.. .+-.+.-|-.+ +.+||+|=++--|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 79999999999999887510 011 133333332 2332222 12211 11112222222 3589999988777643
Q ss_pred cCC--CCCC---Ccch-hhhhhcccccCCcEEEE
Q 005417 623 SGH--RHRC---STLD-IFTEIDRILRPEGWVII 650 (697)
Q Consensus 623 ~~~--~~~c---~~~~-~l~E~dRiLRP~G~~i~ 650 (697)
... +.|. .+.. ++-..-|+||||++ |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 311 1222 2223 44555679999997 54
No 430
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.73 E-value=5.4 Score=41.82 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=59.3
Q ss_pred cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCc-
Q 005417 258 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPA- 331 (697)
Q Consensus 258 d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~- 331 (697)
.+.++|+..+++++....+. ...+.-++||||.|.--.--.+--+- -...++|.|+++..++.|+.- ++..
T Consensus 55 PgRAdYih~laDLL~s~~g~--~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQ--IPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCC--CCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhh
Confidence 56789999999999876651 22355689999988654433332221 234689999999988877642 1211
Q ss_pred -EEE-eecccC----CCCCCCCccEEEeccc
Q 005417 332 -MIG-SFASKQ----LPYPSLSFDMLHCARC 356 (697)
Q Consensus 332 -~~~-~~da~~----LPfpd~sFDlV~~~~~ 356 (697)
.+. +-+... +--.++.||++.|+--
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCC
Confidence 111 111111 1123578999999977
No 431
>PRK11524 putative methyltransferase; Provisional
Probab=77.33 E-value=2.2 Score=45.53 Aligned_cols=54 Identities=20% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CcEEEeecccCC--CCCCCCccEEEecccccc---------------ccccHHHHHHHHHHhccCCeEEEE
Q 005417 330 PAMIGSFASKQL--PYPSLSFDMLHCARCGVD---------------WDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 330 ~~~~~~~da~~L--Pfpd~sFDlV~~~~~llh---------------~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
...+.++|+... .+++++||+|++.--... +..-....+.++.|+|||||.+++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
No 432
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.87 E-value=2.8 Score=43.83 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCce-----e---EEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCC
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLT-----M---CIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLS 347 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~-----~---sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~s 347 (697)
..+|+|+.+-+|+++..|.++-+.. . .|+++|+-+ |. --..+...++|.+... |..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-----PI~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-----PIEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-----ccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 5789999999999999988762220 1 266777632 11 0011223444544332 55678
Q ss_pred ccEEEeccc----cccccccH------HHHHHHHHHhccCCeEEEEEeC
Q 005417 348 FDMLHCARC----GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 348 FDlV~~~~~----llh~~~d~------~~~L~El~RvLKPGG~Lvis~p 386 (697)
-|+|+|-++ .+|-.+.. ..+|.-...+|||||.|+--.+
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 999999754 12211111 1356667889999999986443
No 433
>PRK04148 hypothetical protein; Provisional
Probab=76.51 E-value=5.3 Score=38.39 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=59.6
Q ss_pred eEEEecccCchh-hhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005417 547 RNVLDMNAHFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~-Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
+.|+|+|||+|. +|..|.+.+..|..+=+-| .-+.-+-++|+-.+..|+=++=..-=+-+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~----~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys---------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE----KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS---------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH----HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE----------
Confidence 469999999996 9999987554444443333 4466677777655555543332221122333332
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeec
Q 005417 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 677 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 677 (697)
+|-..++...+.+||+.+.=++.+.-..
T Consensus 84 ------------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 ------------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred ------------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4567788889999999999888887443
No 434
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.31 E-value=16 Score=38.80 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCcEEEeecccCC----CCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQL----PYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~s-V~gvD~S~~ml~~A~ergl~~~~~~~da~~L----Pfpd~sFDlV~~~~~ 356 (697)
...+||-+|+| .|..+..+++.. ... +..++.+++..+.+++.+....+. ...... ....+.+|+|+....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEECCC
Confidence 34788988865 355555566552 222 677788888888887766542221 111110 113457999986522
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12578888999999999987654
No 435
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=75.65 E-value=4.7 Score=45.66 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=47.1
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005417 257 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 257 yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
+++...|..-+...+..... ....+...|||||.|||.++...+..|. -.+++++.-..|.+.|++
T Consensus 42 ~dRNiky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 42 SDRNIKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARK 107 (636)
T ss_pred ccccHHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHH
Confidence 34556677777776654433 1112334699999999999888887763 358999999999988874
No 436
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=75.40 E-value=0.49 Score=42.46 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=37.8
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCC
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 189 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C 189 (697)
.+|||.|++.++.++..|..+..-|. ++++... ++.+.+......++.++.++++.++
T Consensus 33 ~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~----~l~~~~~~~~~~~l~~~~~~l~~~i 90 (97)
T cd04782 33 ENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD----YLDNRNPDELIELLKKQEKEIKEEI 90 (97)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH----HHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999988888 5655554 2223333333344444555554443
No 437
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=75.29 E-value=12 Score=40.47 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
...+||=+||| .|.++..++++-.....++++|.+++-++.+++.+ .... . ..+. .+..+|+|+-.-. .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~--~~~~-~--~~~~-~~~g~d~viD~~G----~ 232 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFAD--ETYL-I--DDIP-EDLAVDHAFECVG----G 232 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcC--ceee-h--hhhh-hccCCcEEEECCC----C
Confidence 34789999987 45555555553111235788899888888876532 1111 1 1111 1124898874322 0
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
......+.+..++|++||.+++...
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1123578889999999999987653
No 438
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=75.24 E-value=14 Score=39.03 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCH----HHHHHHHHcCCCcEEEee
Q 005417 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPAMIGSF 336 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~----~ml~~A~ergl~~~~~~~ 336 (697)
+.|...++.-+.-... .+--....+||=+|++.|....+..+--.+.-.|++++.|+ ..+..|++|- ++.-..-
T Consensus 135 nPfrSKLAA~I~gGvd-nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt-NiiPIiE 212 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVD-NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT-NIIPIIE 212 (317)
T ss_pred ChHHHHHHHHhhcCcc-ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-Cceeeec
Confidence 4555555554432222 11223458999999999999888877644455688888875 3345666553 2222222
Q ss_pred cccCCCC----CCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 337 ASKQLPY----PSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 337 da~~LPf----pd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|+ +.|. .-.-.|+|++--. .++. ..+..+..-.||+||.|+++....
T Consensus 213 DA-rhP~KYRmlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 213 DA-RHPAKYRMLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred cC-CCchheeeeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 33 2331 1235677765422 2333 345667888999999999987544
No 439
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.91 E-value=0.64 Score=45.70 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=38.4
Q ss_pred cccccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 598 DWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 598 ~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+|-.+|-+ ++-|+|-|.|++.+.+ - -....-+-|.-|+|||||++-+.
T Consensus 38 s~e~~F~d--ns~d~iyaeHvlEHlt---~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 38 SNESMFED--NSVDAIYAEHVLEHLT---Y-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhccCCC--cchHHHHHHHHHHHHh---H-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 45566775 9999999999998876 2 23347889999999999999874
No 440
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=74.56 E-value=2.6 Score=41.11 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=48.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC--c--ccccccccccCCCCC-CccccccccCccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--F--VGVLHDWCEAFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG--l--ig~~~~~~e~f~typ-rtyDl~H~~~~~~ 620 (697)
.+|+|+|||.|.++..|++... .|+-++-. ..+..+-++- . +-+++.=.+.++ ++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 4799999999999999997432 33444433 3333333221 0 112221112222 12 3577775543333
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
... .+..-+++... +.++|+++++..
T Consensus 89 ~~~------~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 IST------PILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred cHH------HHHHHHHhcCC-CcceEEEEEEHH
Confidence 211 22233444333 569999999853
No 441
>PRK10742 putative methyltransferase; Provisional
Probab=73.84 E-value=14 Score=39.17 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---Hc-------CC----C
Q 005417 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER-------GL----P 330 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~---er-------gl----~ 330 (697)
+.+++.+.+..+ ...+|||.=+|.|..+..++.+|. .|+.+|-++......+ ++ +. .
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r 146 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhce
Confidence 456666665554 223899999999999999999974 3899999987654332 22 11 1
Q ss_pred cEEEeecccC-CCCCCCCccEEEeccc
Q 005417 331 AMIGSFASKQ-LPYPSLSFDMLHCARC 356 (697)
Q Consensus 331 ~~~~~~da~~-LPfpd~sFDlV~~~~~ 356 (697)
+.+...+... |.-...+||+|++--.
T Consensus 147 i~l~~~da~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 147 LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred EEEEeCcHHHHHhhCCCCCcEEEECCC
Confidence 2233334322 2212237999987655
No 442
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=73.41 E-value=15 Score=39.74 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecC---CHHHHHHHHHcCCCcEEEeecccCC--CCCCCCccEEEecccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEA---SGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~---S~~ml~~A~ergl~~~~~~~da~~L--Pfpd~sFDlV~~~~~l 357 (697)
+.+||=+|+| .|.++..+++.. ...+++++. ++.-++.+++.|... .....+.. ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 4788988987 466666666652 224667765 677788888766532 11111110 001246898875532
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..++|++||.+++...
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEec
Confidence 12478889999999999987654
No 443
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.32 E-value=14 Score=40.09 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=58.9
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCccEEEeccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----P-fpd~sFDlV~~~~~ 356 (697)
..+||=+||| .|..+..+++.. -...++++|.++..++.+++.|....+. ...... . .....+|+|+-.-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 4788888876 355566666652 1124788999999999998877533221 111110 0 12235898874321
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ...+.+..+.|++||.+++...
T Consensus 255 ------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 ------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ------C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 2467778899999999998754
No 444
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=72.69 E-value=10 Score=44.17 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCc-hHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC---------------------
Q 005417 283 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--------------------- 340 (697)
Q Consensus 283 ~~~~VLDIGCGtG-~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~--------------------- 340 (697)
.+.+||=+|||.= ..+..+++. ....|+.+|.++..++.+++.|... ...+...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHH
Confidence 3589999999954 555555554 1235888999999888887755332 1111100
Q ss_pred --CCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEE
Q 005417 341 --LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 341 --LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lv 382 (697)
++-.-..+|+|++.-. +.-.+.|.-+.+++.+.+|||+.++
T Consensus 239 ~~~~e~~~~~DIVI~Tal-ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTAL-IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHhCCCCEEEECcc-cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1111246999987743 4444455557888999999999877
No 445
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=72.55 E-value=5.9 Score=45.00 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=61.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---ccccccccccCCC--C-CCccccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPT--Y-PRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig~~~~~~e~f~t--y-prtyDl~H~ 615 (697)
..|||+|||.|.|+.+|.+.. ..|+-+|.. ..+..+-+ .|+ -=+..|+-+.++. + +.+||+|-+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA-----AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 379999999999999998632 245555544 34433322 233 1122333332322 2 257898865
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHH-HHHHHHHHhhcCceeEE
Q 005417 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARV 673 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~ 673 (697)
+- .|..+..++-.+-+ |.|++.++++=++.. -..++.|.+ --|++..
T Consensus 374 dP---------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~ 421 (443)
T PRK13168 374 DP---------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKR 421 (443)
T ss_pred Cc---------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEE
Confidence 22 33334455544444 589999999955544 444555533 2466543
No 446
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=72.28 E-value=2 Score=44.12 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=44.1
Q ss_pred EEEecccCchhhhhhhhccCCCe-EEEEeecCCCC-CchhhHhcc-Cc---ccccccccccCCCCCCccccccccCcccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSV-WVMNVVPTIGT-NHLPMILDR-GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~v-wvmnv~p~~~~-~~l~~i~~R-Gl---ig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.|||+|||+|=++|.|...-.++ -|..|=....- ..-.-.+++ |+ .-+.+|=.+..+.. -.||.||+......
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~-apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE-APFDRIIVTAAVPE 153 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBBSS
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC-CCcCEEEEeeccch
Confidence 79999999998888776421111 12222211110 111112221 33 12333433333321 25999999443322
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005417 622 ESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+..-++| -|+|||.+|+
T Consensus 154 ---------ip~~l~~---qL~~gGrLV~ 170 (209)
T PF01135_consen 154 ---------IPEALLE---QLKPGGRLVA 170 (209)
T ss_dssp -----------HHHHH---TEEEEEEEEE
T ss_pred ---------HHHHHHH---hcCCCcEEEE
Confidence 2244555 4999999997
No 447
>KOG2730 consensus Methylase [General function prediction only]
Probab=71.64 E-value=5 Score=41.80 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccC----CCCCCCCccEEEe
Q 005417 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ----LPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~----LPfpd~sFDlV~~ 353 (697)
...|+|.-||.|..+..++.++ ..|.++|+++.-+.-|+.. |++ +.|.++|... +.+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4679999999999999998875 3478999999888777654 444 4566776443 3344445667765
Q ss_pred ccccccccccHHHHHHHHHHhccCCeE
Q 005417 354 ARCGVDWDQKDGILLLEVDRVLKPGGY 380 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~ 380 (697)
+.- .....-...-+..+...++|.|.
T Consensus 172 spp-wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 172 SPP-WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCC-CCCcchhhhhhhhhhhhcchhHH
Confidence 532 11112223345555555665543
No 448
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=71.31 E-value=7.2 Score=40.48 Aligned_cols=132 Identities=14% Similarity=0.202 Sum_probs=74.7
Q ss_pred ceeEEEecccCchhhhhhhhccCCC----eEEEEeecCCCCCchhhHhccCc---cccc--ccccccCCC-CCCcccccc
Q 005417 545 MVRNVLDMNAHFGGFNSALLEKGKS----VWVMNVVPTIGTNHLPMILDRGF---VGVL--HDWCEAFPT-YPRTYDLVH 614 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~----vwvmnv~p~~~~~~l~~i~~RGl---ig~~--~~~~e~f~t-yprtyDl~H 614 (697)
.-++||.+|.+.|==|..|.. ..| +.+.=+-|......-...-+=|+ |=++ .|+-+-++. ..-+||||-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~-~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMAL-ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 578999999988755555543 112 22222222111111222333343 1122 488777774 667999998
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE--------------cCHHHHHHHHHHHhhcCce----eEEeee
Q 005417 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--------------DTARLIESARALTTRLKWD----ARVIEI 676 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--------------d~~~~~~~~~~~~~~~~W~----~~~~~~ 676 (697)
-+.-= -.....+=+.=++|||||.+|+- +.......++....-+.++ ..+..
T Consensus 138 IDadK---------~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP- 207 (219)
T COG4122 138 IDADK---------ADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP- 207 (219)
T ss_pred EeCCh---------hhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe-
Confidence 74433 33346676777889999999862 2234455566555555554 33331
Q ss_pred ccCCCccEEEEEcc
Q 005417 677 ESNSDERLLICQKP 690 (697)
Q Consensus 677 e~~~~~~~li~~K~ 690 (697)
-.+.++|+.|.
T Consensus 208 ---~gDGl~v~~k~ 218 (219)
T COG4122 208 ---LGDGLLLSRKR 218 (219)
T ss_pred ---cCCceEEEeec
Confidence 13788998885
No 449
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=70.86 E-value=17 Score=38.88 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCcEEEeec--ccCC-C-CCCCCccEEEecccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFA--SKQL-P-YPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~s-V~gvD~S~~ml~~A~ergl~~~~~~~d--a~~L-P-fpd~sFDlV~~~~~l 357 (697)
+.+||=+|+| .|.++..+++.. ... +++++.+++..+.+++.|....+..-+ ...+ . .....||+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4778888875 444555555542 233 788999999888888777533321111 0011 0 12346999985422
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|+++|.+++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12456778899999999987654
No 450
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.69 E-value=19 Score=39.42 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=58.4
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCcee-EEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEeccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~-sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~~ 356 (697)
..+||=+|+| .|.++..+++.. .. .|+++|.++..++.+++.|....+...+ ..+ ....+.+|+|+-.-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCC
Confidence 3677778876 455666666542 23 4788899999999998877543322111 110 011236899885422
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|++||.+++...
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467788899999999987654
No 451
>PRK13699 putative methylase; Provisional
Probab=70.31 E-value=5.6 Score=41.26 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEcc
Q 005417 631 TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 631 ~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K~ 690 (697)
+..++-|+-|||+|||++++--....+..+..+.....|...-. +||.|+
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~----------IiW~K~ 100 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGH----------LVFTKN 100 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeE----------EEEECC
No 452
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=70.24 E-value=15 Score=41.99 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCch--HHHHHhhcCCceeEEEEecCCHHHHHHHHH--cC---C-CcEE--EeecccCCCCCC-CCccEE
Q 005417 283 GVRTILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLE--RG---L-PAMI--GSFASKQLPYPS-LSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~--~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--rg---l-~~~~--~~~da~~LPfpd-~sFDlV 351 (697)
.++.++|+|.|.|. .++.+.-++ ..-.++.||.+.+|...... ++ . ...+ .+.--..+|... +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 35678888877554 444444442 34458899999999876542 11 1 1111 122334567554 459999
Q ss_pred EeccccccccccH--HHHHH-HHHHhccCCeEEEEEeCCCC
Q 005417 352 HCARCGVDWDQKD--GILLL-EVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 352 ~~~~~llh~~~d~--~~~L~-El~RvLKPGG~Lvis~p~~~ 389 (697)
+|++.+++..... ..... -+.+..++||++++......
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999855543222 22333 36667899999999887653
No 453
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=69.99 E-value=2.3 Score=39.20 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=27.6
Q ss_pred cccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 126 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 126 ~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
+|||.|+++|++++..|..+..=|. +++++..
T Consensus 34 ~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 34 GGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred CCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 8999999999999999999985557 6777775
No 454
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.86 E-value=18 Score=37.88 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=58.4
Q ss_pred CCCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec----ccCCCCCCCCccEEEeccc
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA----SKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d----a~~LPfpd~sFDlV~~~~~ 356 (697)
...+||=+|+| .|..+..+++. |. ..++.+|.++.-++.+++.|....+...+ ...+ .....+|+|+-.-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEECCC
Confidence 34788888876 45555556554 32 23677798888888888877533221100 0001 12235898875422
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|+|+|.+++...
T Consensus 197 -------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 -------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13478888999999999997663
No 455
>PRK13749 transcriptional regulator MerD; Provisional
Probab=69.82 E-value=2.3 Score=40.12 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=28.2
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
.+|||.|+++++++|..|..+..-|. +++++..
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 36 TGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999998777778 6777664
No 456
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=69.69 E-value=5.9 Score=42.94 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=56.9
Q ss_pred EEEecccCchhhhhhhhccCCC--eEEEEeecCCCC--CchhhHhccCccc---ccccccccCCCCCCccccccccCccc
Q 005417 548 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGT--NHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~--vwvmnv~p~~~~--~~l~~i~~RGlig---~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+|+|.|||+|-.++.|.+. .| -++|-=+...+- ++..+.. -++-+ ...|-+++-. ..||+|=|+--|.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~-N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAA-NGVENTEVWASNLYEPVE---GKFDLIISNPPFH 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHH-cCCCccEEEEeccccccc---ccccEEEeCCCcc
Confidence 9999999999999999973 44 455532222221 2222222 23333 2223334333 4899999988887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005417 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.=+. -..--...++-+-=+-|++||-++|=
T Consensus 236 ~G~~-v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 236 AGKA-VVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred CCcc-hhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 4320 00000114667778899999977763
No 457
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=69.30 E-value=25 Score=36.22 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeE-EEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~s-V~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+.+||=.|||. |..+..+++.. ... +++++.+++..+.+++.|....+... ..-......+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVAAD--TADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCcccccc--chhhhcCCCCCEEEEccC----
Confidence 347788888764 55666666542 233 78889898888888877621111111 100113456899885421
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 361 DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|+++|.++....
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEec
Confidence 12467888999999999987543
No 458
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=55 Score=34.98 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHH----c--CCCcEEEeecc----cCCCCCCCCcc
Q 005417 284 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLE----R--GLPAMIGSFAS----KQLPYPSLSFD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~----g~~~~sV~gvD~S~~ml~~A~e----r--gl~~~~~~~da----~~LPfpd~sFD 349 (697)
..+.+|+|.|+..-+..|... +. ...+.++|+|...+....+ . ++++.-.+++. ..+| ..+--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 578999999999887776543 42 3678999999988854322 1 33333333332 2233 33333
Q ss_pred EEEecccccc-ccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005417 350 MLHCARCGVD-WDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh-~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.+...+.+. +.+++ ..+|..+..+|+||-+|++.+-..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 4433333233 33333 569999999999999999876543
No 459
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=69.16 E-value=39 Score=35.92 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEeccc
Q 005417 284 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGC--GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~~ 356 (697)
+.+||=.|+ |.|.++..+++.. ...+++++.+++..+.+++.|....+..-+...+ ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 478888884 4788888887762 3457788888888888887775333321110011 012346898874321
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
...+.+..+.|++||.++...
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEec
Confidence 135678899999999999754
No 460
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=68.65 E-value=1.3 Score=42.79 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.1
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
..+|||.|++.+++++..|..+..-|. ++++...
T Consensus 39 ~~~gyR~Y~~~~l~rl~~I~~lr~~G~---sL~eI~~ 72 (144)
T PRK13752 39 PYGSIRRYGEADVTRVRFVKSAQRLGF---SLDEIAE 72 (144)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 358999999999999999999998888 6666654
No 461
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=68.11 E-value=22 Score=37.92 Aligned_cols=86 Identities=21% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+||=+||| .|.++..+++. |.. .+..+|..+..++.|.+... .+.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG----- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC-----
Confidence 3568888876 56677777765 422 35667888877776654321 111110 2346899885532
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|++||.+++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 12467888999999999998654
No 462
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=66.59 E-value=2.7 Score=39.91 Aligned_cols=34 Identities=26% Similarity=0.115 Sum_probs=29.4
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
..+|||.|++.++.++..|+.++.-|. ++++...
T Consensus 32 ~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 32 PVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred CCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 348999999999999999999999888 6776554
No 463
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=66.59 E-value=3.4 Score=44.72 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=59.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcc--cc-cccccccCCCCCCccccccccCc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGli--g~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||++||.|.|+..|.+... .|+-+|.. ..+..+ -..|+- -. ..|..+-...-+..||+|-.+-
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP- 248 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP- 248 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC-
Confidence 5799999999999999986322 44555543 333322 223431 01 1111111111124689887741
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHH-HHHHHHHhhcCceeEE
Q 005417 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLI-ESARALTTRLKWDARV 673 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~-~~~~~~~~~~~W~~~~ 673 (697)
.|..+...++++=.-++|++.++++-++..+ ..++.+ . -|++..
T Consensus 249 --------Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~ 293 (315)
T PRK03522 249 --------PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIER 293 (315)
T ss_pred --------CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEE
Confidence 3444443444443336899999998665443 444444 2 466544
No 464
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.37 E-value=33 Score=36.63 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=58.6
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC----C--CCCCCCccEEEecc
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L--PYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~----L--Pfpd~sFDlV~~~~ 355 (697)
...+||-.|+|. |..+..+++. ....++.+..+++..+.+++.+....+. ..... + ..++..+|+++...
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTIN-VGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCCCCCCEEEECC
Confidence 346888888763 6677777765 2345677777788888777666322221 11111 1 02345699998653
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ....+.++.+.|+++|.++....
T Consensus 236 g-------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 236 G-------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 2 12467888999999999886543
No 465
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=65.92 E-value=6.5 Score=40.05 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=58.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC--------CCCCCCccEEEec
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L--------Pfpd~sFDlV~~~ 354 (697)
+..+|||+||.+|+++....++--+...+.|+|+-. ..--.|...... .|..+- ..|+...|+|++-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~-~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQG-NDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccc-cccCCHHHHHHHHHhCCCCcccEEEec
Confidence 358999999999999999888744556688888632 111122211111 011110 1356788999886
Q ss_pred ccccccc----ccHH-------HHHHHHHHhccCCeEEEEEeCCCC
Q 005417 355 RCGVDWD----QKDG-------ILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~----~d~~-------~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. ..-. .|.. .+|.-....++|+|.|+.-.....
T Consensus 144 Ma-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 144 MA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 43 2111 1111 234444566789999998766443
No 466
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=65.82 E-value=1.8 Score=45.95 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=57.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh---------hHhccCc---ccccccccccCCCCCCccccc
Q 005417 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP---------MILDRGF---VGVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~---------~i~~RGl---ig~~~~~~e~f~typrtyDl~ 613 (697)
|+|+|+|||-|=.--.|...+. +|+-+|.. ..+- -.+++++ |-..|.=-|.+- -.||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 6699999999977777765443 44444443 2222 2344442 111121112222 229999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005417 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
=|+-+..+.+ +...++-=+=+.|+|||-+.|.+-.
T Consensus 163 vcsevleHV~------dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVK------DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHh------CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9988888875 2335566677899999999998654
No 467
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=65.60 E-value=3.5 Score=38.82 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=28.6
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
.+|||.|++.++.++..|..+...|. ++++...
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~~ 68 (120)
T TIGR02054 36 TSGYGIFDDASLQRLRFVRAAFEAGI---GLGELAR 68 (120)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999999999888 6666553
No 468
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=65.22 E-value=9.8 Score=39.76 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=72.5
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCC-CCchhhHhccCccc--ccccccccCCCCCCccccccccCccc
Q 005417 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~-~~~l~~i~~RGlig--~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
..=+-|||+|||.|=-++-|.+.+ -+|+ =+|- +.-|-++.||-+=| ++.|.-|..|+=|-|||=+-.-.-.
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~G-h~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv- 122 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSG-HQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV- 122 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCC-ceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-
Confidence 356889999999999999998865 4443 2232 36677777754432 5678889999989999954321111
Q ss_pred cccC-CCCCCCcc-----hhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCc
Q 005417 621 LESG-HRHRCSTL-----DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 669 (697)
Q Consensus 621 ~~~~-~~~~c~~~-----~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W 669 (697)
.|-+ ....|... ..+--+=..|.+|+-.+++=-++..+.++-|..+-.|
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~ 177 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMK 177 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHh
Confidence 1110 00112222 2344467889999999998443333334434333334
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=64.71 E-value=47 Score=36.18 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=60.4
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCCCcEEEeecccCC-----CCCCCCccEEEec
Q 005417 283 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~ 354 (697)
.+.+||=.|+ |.|.++..+++.. ...+++++.+++..+.++ +.|....+..-+...+ ....+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 3478998987 4788888887762 345788888888888776 5565433321100011 0112468988754
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-. ...+.+..+.|++||.+++...
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEECc
Confidence 22 2467888999999999997653
No 470
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=64.25 E-value=8.2 Score=44.49 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=54.3
Q ss_pred EEEecccCchhhhhhhhcc--CCCeEEEEeecCCCC----CchhhHhcc-Cccc--cc-ccccccCCCCCCcccccc---
Q 005417 548 NVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGT----NHLPMILDR-GFVG--VL-HDWCEAFPTYPRTYDLVH--- 614 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~--~~~vwvmnv~p~~~~----~~l~~i~~R-Glig--~~-~~~~e~f~typrtyDl~H--- 614 (697)
.||||.|+-||=..+|.+. +... |+-.|-+ ..|.--++| |+-- +. .|=+..-..+|.+||.|-
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 6999999999977666542 1122 3333433 334434455 5421 11 121111124467899999
Q ss_pred -ccCccccccCC--C--------CCCCc--chhhhhhcccccCCcEEEEE
Q 005417 615 -AEGLLSLESGH--R--------HRCST--LDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 615 -~~~~~~~~~~~--~--------~~c~~--~~~l~E~dRiLRP~G~~i~~ 651 (697)
|++....-+.. . .+|.- ..||-..=+.|||||.+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 66553221100 0 00000 16777788999999999987
No 471
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=63.75 E-value=5.1 Score=42.89 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=52.1
Q ss_pred ccccccccCCCCC---CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE--------EcC-------HH-
Q 005417 595 VLHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII--------RDT-------AR- 655 (697)
Q Consensus 595 ~~~~~~e~f~typ---rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~--------~d~-------~~- 655 (697)
...|.+|-++. + .+||.|=.. .|.. .--++.++|-.|-++|||||++|= .+. .+
T Consensus 149 ~aGDF~e~y~~-~~~~~~~d~VvT~-FFID-----TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveL 221 (270)
T PF07942_consen 149 CAGDFLEVYGP-DENKGSFDVVVTC-FFID-----TAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVEL 221 (270)
T ss_pred ecCccEEecCC-cccCCcccEEEEE-EEee-----chHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCC
Confidence 34566666655 3 578876442 2322 113577899999999999998883 333 22
Q ss_pred HHHHHHHHHhhcCceeEEeee
Q 005417 656 LIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 656 ~~~~~~~~~~~~~W~~~~~~~ 676 (697)
.+++|+.+++.+-|+....+.
T Consensus 222 s~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 222 SLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CHHHHHHHHHHCCCEEEEEEE
Confidence 289999999999999987653
No 472
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=63.56 E-value=32 Score=37.26 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc--cCC----C--CCCCCcc----
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL----P--YPSLSFD---- 349 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da--~~L----P--fpd~sFD---- 349 (697)
.+.+||=+|||. |..+..+++.. ...++++|.+++.++.+++.|....+...+. ..+ . .....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 347899999864 66666666652 2357888999999999988775433211110 000 0 0112354
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|+-.-. ....+....+.|++||.+++...
T Consensus 244 ~v~d~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFECSG-------SKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEECCC-------ChHHHHHHHHHHhcCCeEEEECc
Confidence 4542211 12467778889999999998764
No 473
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=63.46 E-value=5.2 Score=41.45 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=64.6
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeE-EEEee-cCCCC-CchhhHh--ccCcccccccc-cccCCCCCCccccccccC
Q 005417 544 NMVRNVLDMNAHFGGFNSALLEKGKSVW-VMNVV-PTIGT-NHLPMIL--DRGFVGVLHDW-CEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vw-vmnv~-p~~~~-~~l~~i~--~RGlig~~~~~-~e~f~typrtyDl~H~~~ 617 (697)
.....+||.|||.|=..-.|+- ++- .+-+| |+..- ++.+--+ +.+-+|-+..- =+-|-.=+.+||+|=+--
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl---~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLL---PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCC---CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHH---HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 4688999999999999888874 221 12222 22221 3332212 22223322211 111211146999999977
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeeec
Q 005417 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIE 677 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e 677 (697)
|..+.+. ..+...|.-.=.-|+|+|++|+.++. ..-+..+.|-+.=-.++...+..
T Consensus 131 ~lghLTD----~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 131 CLGHLTD----EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp -GGGS-H----HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hhccCCH----HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 7766652 34445666667789999999997543 11355556666655665555433
No 474
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=63.38 E-value=5.9 Score=45.33 Aligned_cols=112 Identities=23% Similarity=0.308 Sum_probs=55.6
Q ss_pred eeEEEecccCchhhhhhhhcc------CCCeEEEEeecCCCC--Cchh-hHhccCc---ccccccccccCCCCCCccccc
Q 005417 546 VRNVLDMNAHFGGFNSALLEK------GKSVWVMNVVPTIGT--NHLP-MILDRGF---VGVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~------~~~vwvmnv~p~~~~--~~l~-~i~~RGl---ig~~~~~~e~f~typrtyDl~ 613 (697)
--+|||+|||.|-...+-+.. ...|.. |-.+.. .+|+ .|-+.|+ |=++|.-=+-+.. |--.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA---VEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA---VEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE---EESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE---EcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEE
Confidence 467999999999885221111 122222 222211 2333 2244454 5555544444443 3456666
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE---------cCHHHHHHHHHHHh
Q 005417 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---------DTARLIESARALTT 665 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---------d~~~~~~~~~~~~~ 665 (697)
=.--+-|.- ....+..+|.-.||.|+|+|.+|=+ .......++.....
T Consensus 263 VSElLGsfg----~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~~ 319 (448)
T PF05185_consen 263 VSELLGSFG----DNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWWN 319 (448)
T ss_dssp EE---BTTB----TTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHHG
T ss_pred EEeccCCcc----ccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhcc
Confidence 443332221 2234557788899999999988821 33466666655433
No 475
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=63.06 E-value=3.5 Score=37.83 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 159 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~ 159 (697)
..+|||.|++.+++++..|..+...|. ++++..
T Consensus 32 ~~~g~R~Y~~~~l~~l~~I~~lr~~G~---~l~~I~ 64 (107)
T cd01111 32 TEGGYGLFDDCALQRLRFVRAAFEAGI---GLDELA 64 (107)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347999999999999999999887777 555554
No 476
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=62.84 E-value=3.7 Score=36.78 Aligned_cols=33 Identities=21% Similarity=0.013 Sum_probs=28.2
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
.+|||.|++.++.++..|+.+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~~I~~ 65 (96)
T cd04768 33 ENGYRYYSYAQLYQLQFILFLRELGF---SLAEIKE 65 (96)
T ss_pred CCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 46999999999999999999998888 5655554
No 477
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=62.20 E-value=5 Score=41.44 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=58.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCC---------CCchhhHhccCcccccccccccCCCCC-CccccccccC
Q 005417 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG---------TNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~---------~~~l~~i~~RGlig~~~~~~e~f~typ-rtyDl~H~~~ 617 (697)
-||.+|||+|.---.+-. +..+=|-.+=|... ...-+.=++|=.+|- -|.+|--+ -+||.|-|.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~----ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD----GENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec----hhcCcccccCCeeeEEEEE
Confidence 579999999975555532 12223333433321 101111222222222 24455334 5899999865
Q ss_pred ccccccCCCCCCCc---chhhhhhcccccCCcEEEEEcC----HHHHHHHH-HHHhh
Q 005417 618 LLSLESGHRHRCST---LDIFTEIDRILRPEGWVIIRDT----ARLIESAR-ALTTR 666 (697)
Q Consensus 618 ~~~~~~~~~~~c~~---~~~l~E~dRiLRP~G~~i~~d~----~~~~~~~~-~~~~~ 666 (697)
++ |+. ...|=|+-|||||||.+|+=+. -+.|.++- ..++.
T Consensus 154 vL---------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 154 VL---------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EE---------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 54 443 3789999999999999998543 34454443 34444
No 478
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.05 E-value=19 Score=35.70 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
.+..|||-=||+|+.+....+.| -...|+|+++..++.|.+
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 45899999999999888877765 347999999999998864
No 479
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=61.86 E-value=3.9 Score=38.38 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=27.8
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
.+|||.|+++++.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (127)
T cd04784 33 ANNYRLYDEEHLERLLFIRRCRSLDM---SLDEIRT 65 (127)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999998888778 6666554
No 480
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=61.86 E-value=2.2 Score=39.02 Aligned_cols=58 Identities=19% Similarity=0.077 Sum_probs=37.8
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCC
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 189 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C 189 (697)
.+|||.|++.++.++..|..+..-|. ++++... ++-+.+......++.++++.+++..
T Consensus 34 ~ngyR~Y~~~~i~~l~~I~~lr~~G~---sl~~i~~----l~~~~~~~~~~~~l~~~~~~l~~~i 91 (108)
T cd01107 34 DTGYRYYSAEQLERLNRIKYLRDLGF---PLEEIKE----ILDADNDDELRKLLREKLAELEAEI 91 (108)
T ss_pred CCCccccCHHHHHHHHHHHHHHHcCC---CHHHHHH----HHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988778 6666554 2223333222333444444444433
No 481
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=61.43 E-value=3.9 Score=37.66 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.7
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
..+|||.|++.++.++..|..|..-|. ++++...
T Consensus 31 ~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sl~eI~~ 64 (112)
T cd01282 31 SANGYRDYDEAAVDRVRQIRRLLAAGL---TLEEIRE 64 (112)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 458999999999999999999998778 5665553
No 482
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=61.34 E-value=3.7 Score=34.00 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=27.8
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 159 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~ 159 (697)
.-+|||.|++.|+.++..|..|+..|. +++++.
T Consensus 32 ~~~g~R~yt~~di~~l~~i~~l~~~g~---~l~~i~ 64 (68)
T cd04763 32 SDGGHRLFNDADIDRILEIKRWIDNGV---QVSKVK 64 (68)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 347999999999999999999988777 666554
No 483
>PLN02740 Alcohol dehydrogenase-like
Probab=61.15 E-value=34 Score=37.70 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=58.3
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCcee-EEEEecCCHHHHHHHHHcCCCcEEEeeccc-CC-----CCCCCCccEEEec
Q 005417 283 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~-sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~L-----Pfpd~sFDlV~~~ 354 (697)
...+||=+||| .|..+..+++.. .. .|+++|.+++.++.+++.|....+..-+.. .+ ....+.||+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 34788888886 445555566542 23 478899999999999887754333111100 00 0112269998754
Q ss_pred cccccccccHHHHHHHHHHhccCC-eEEEEEeC
Q 005417 355 RCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPG-G~Lvis~p 386 (697)
-. ....+.+....+++| |.+++...
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 32 124677888889997 98887654
No 484
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.06 E-value=34 Score=37.58 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=63.9
Q ss_pred CEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----CCCCC-CCccEEEecccc
Q 005417 285 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----LPYPS-LSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----LPfpd-~sFDlV~~~~~l 357 (697)
.+|+=+||| .|.++..+++. .....|+.+|.++.-++.|++.+....+.....+. +.... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 389999999 57776666665 23456889999999999998854222221111100 11222 36999984432
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005417 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...++.++.+++||||.+++....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 235899999999999999987754
No 485
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.67 E-value=26 Score=38.39 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHH-HHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQ-VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~m-l~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+||=.|+| .|.++..+++.- ...++.++.+... .+.+++.|....+..-+...+.-..+.+|+|+-.-.
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 3677778886 556666666652 2345666665544 344455564322211110011000124888874321
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|++||.++....
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12467888999999999997653
No 486
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=60.60 E-value=40 Score=36.32 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc--cCC--CCCCCCcc-EEEeccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL--PYPSLSFD-MLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da--~~L--Pfpd~sFD-lV~~~~~ 356 (697)
..+||=.||| .|.++..+++. |. ..+++++.+++-++.+++.|....+...+. ..+ -.....+| +|+-.-.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 4788888876 44455555554 32 236788889888888877664322211000 000 01234577 5543211
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|++||.+++...
T Consensus 239 -------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 239 -------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13578889999999999998764
No 487
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=60.58 E-value=13 Score=41.53 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH
Q 005417 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 325 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ 325 (697)
+...|.|+|.|.|.++..|.-+ ...+|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 4678999999999999988655 2467899999976655443
No 488
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=60.58 E-value=29 Score=41.49 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCEEEEeCCCCchHHHHHhhc-------C----CceeEEEEecCC---HHHHHHHHH--------------------cCC
Q 005417 284 VRTILDIGCGYGSFGAHLFSK-------E----LLTMCIANYEAS---GSQVQLTLE--------------------RGL 329 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~-------g----~~~~sV~gvD~S---~~ml~~A~e--------------------rgl 329 (697)
.-+|||+|=|+|.......+. + ....+++.+|.. .+.+..+.+ .|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 368999999999865544421 1 124677888753 333332221 111
Q ss_pred ----------CcEEEeecccC-CCCCCCCccEEEeccccccccccH--HHHHHHHHHhccCCeEEEE
Q 005417 330 ----------PAMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 330 ----------~~~~~~~da~~-LPfpd~sFDlV~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvi 383 (697)
...+..+|+.. ++--...||+++.-...-...++. ..++.++.|+++|||.|+-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 11123334322 221124699998764311111111 5799999999999999884
No 489
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=60.39 E-value=5.3 Score=37.54 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.3
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 159 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~ 159 (697)
..+|||.|++.++.++..|..+..-|. ++++-.
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (127)
T TIGR02044 32 SEGGYRTYTQQHLDELRLISRARQVGF---SLEECK 64 (127)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 357999999999999999999988877 555543
No 490
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=60.18 E-value=37 Score=36.47 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=61.3
Q ss_pred CEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 285 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 285 ~~VLDIGCG--tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
.+|+=+|.| -|+++..+.+.|. ...+++.|.+...++.+.+.++........ .--.....|+|+.+-- ..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~VivavP----i~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVAVP----IE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEecc----HH
Confidence 567778877 5677777777764 567899999999999998877544432111 0112346899986622 12
Q ss_pred cHHHHHHHHHHhccCCeEEE
Q 005417 363 KDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lv 382 (697)
....+++++...|++|..+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHHhcccCCCCCEEE
Confidence 34578999999999987654
No 491
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=59.89 E-value=4.3 Score=39.00 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=27.6
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 159 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~ 159 (697)
..+|||+|+++|+.++..|..++..|. ++++-.
T Consensus 32 ~~~g~R~Y~~~dl~~l~~I~~lr~~G~---sl~eI~ 64 (139)
T cd01110 32 NAGNQRRYPRDVLRRIAFIKVAQRLGL---SLAEIA 64 (139)
T ss_pred CCCCCeEECHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 357999999999999999999998888 555433
No 492
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=59.72 E-value=40 Score=38.29 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005417 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.+++|+=+|||. |.....+++. ..+.|+.+|.++.-+..|.+.|.... ... +.+ ..+|+|+..-.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~atG----- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTTG----- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECCC-----
Confidence 358999999994 5555555443 12357789999888888887664221 111 111 35799986532
Q ss_pred ccHHHHHH-HHHHhccCCeEEEEEeC
Q 005417 362 QKDGILLL-EVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~-El~RvLKPGG~Lvis~p 386 (697)
.. .++. +..+.+|+||+++....
T Consensus 267 -~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 -NK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -CH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 22 3454 45889999999988764
No 493
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=59.20 E-value=22 Score=37.36 Aligned_cols=83 Identities=22% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH---HHHHc---CC--------C
Q 005417 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER---GL--------P 330 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~---~A~er---gl--------~ 330 (697)
+.+.+...+..+ ...+|||.=+|-|.-+..++..|. .|++++-|+.+.. .+.++ .. .
T Consensus 63 ~~l~kA~Glk~~------~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 63 DPLAKAVGLKPG------MRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp SHHHHHTT-BTT------B---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred cHHHHHhCCCCC------CCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 345555554443 335899999999999999887764 5999999986642 22211 11 2
Q ss_pred cEEEeecccC-CCCCCCCccEEEeccc
Q 005417 331 AMIGSFASKQ-LPYPSLSFDMLHCARC 356 (697)
Q Consensus 331 ~~~~~~da~~-LPfpd~sFDlV~~~~~ 356 (697)
+.+...|... |+.++++||+|.+--.
T Consensus 134 i~l~~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCCCHSS--SEEEE--S
T ss_pred CEEEcCCHHHHHhhcCCCCCEEEECCC
Confidence 3344455433 5566889999998655
No 494
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.18 E-value=58 Score=34.34 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+||=.|+| .|..+..+++. ....++.++.+++..+.+++.|....+. .... ...+.||+|+-...
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC------
Confidence 4678877754 33344444443 1234778888888888888766443221 1111 23456999986422
Q ss_pred cHHHHHHHHHHhccCCeEEEEE
Q 005417 363 KDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis 384 (697)
....+....+.|+++|.++..
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888899999999973
No 495
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=58.72 E-value=4.8 Score=37.95 Aligned_cols=33 Identities=18% Similarity=0.010 Sum_probs=27.5
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
-+|||.|++.++.++..|..+..-|. ++++-..
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~lG~---sL~eI~~ 65 (127)
T TIGR02047 33 DNNYRVYTVGHVERLAFIRNCRTLDM---SLAEIRQ 65 (127)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 37999999999999999999988788 5555543
No 496
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=58.51 E-value=48 Score=35.27 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC------CCCCCCccEEEeccc
Q 005417 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L------Pfpd~sFDlV~~~~~ 356 (697)
..+||-.|+| .|..+..+++.-. ...+..++.++...+.+++.+....+. .....+ -.+++.||+|+-...
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 4678887775 4666666666521 124666777777777777655322221 110110 013357999885421
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEe
Q 005417 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
....+.+..+.|+++|.++...
T Consensus 246 -------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 -------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1247888899999999988654
No 497
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=58.43 E-value=4.7 Score=36.09 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=28.9
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
.+|||.|++.++.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~eI~~ 65 (96)
T cd04788 33 EGGHRLYDRADIRRLHQIIALRRLGF---SLREIGR 65 (96)
T ss_pred CCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 47999999999999999999988888 6776664
No 498
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=58.21 E-value=5.8 Score=37.94 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.8
Q ss_pred cccccccchhhhhHHHHhhhhhccCCC
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSS 150 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~ 150 (697)
..+|||.|++.++.++..|..+..-|.
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (135)
T PRK10227 32 SENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHCCC
Confidence 458999999999999999999866666
No 499
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=57.85 E-value=4.9 Score=35.42 Aligned_cols=32 Identities=25% Similarity=0.136 Sum_probs=27.6
Q ss_pred cccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 126 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 126 ~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
+|||.|++.|+..+..|..|...|. ++++...
T Consensus 35 ~g~R~Ys~~dv~~l~~I~~Lr~~G~---sl~~i~~ 66 (88)
T cd01105 35 GGQRKYSLADVDRLLVIKELLDEGF---TLAAAVE 66 (88)
T ss_pred CCceecCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 6999999999999999999998888 6665554
No 500
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=57.50 E-value=6.4 Score=36.97 Aligned_cols=34 Identities=24% Similarity=0.054 Sum_probs=28.7
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCcccccc
Q 005417 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 160 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~ 160 (697)
..+|||.|+++++.++..|..|..-|. ++++...
T Consensus 32 ~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (126)
T cd04785 32 TAGGYRLYGAAHVERLRFIRRARDLGF---SLEEIRA 65 (126)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 357999999999999999999998888 5665553
Done!