BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005419
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 181/471 (38%), Gaps = 130/471 (27%)
Query: 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDL 259
C+++V +G + + DGS R+F+ ++G + T PE G + P+LD+
Sbjct: 25 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDI 76
Query: 260 TDQVHADV----ELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPS 315
V + + E G++ +AFHPN+++NG+ +VS+ ++ W
Sbjct: 77 HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW------------------ 118
Query: 316 KLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQIL 375
P + + E+ TV + V R L + H GGQ+L
Sbjct: 119 ------AIGPHDHILRVVEY------TVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL 166
Query: 376 FGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVD----KIPSAKEISDLGLWG 431
FGP DG LY ++GDG D G ++RLDVD +P
Sbjct: 167 FGP-DGFLYIILGDGXITLDDXEEXDGLSDFTGSVLRLDVDTDXCNVP------------ 213
Query: 432 NYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSY-----FLCADVGQDEYEEVD 486
YSIP NP+ PE++A G +P RC+ D LC+D
Sbjct: 214 -YSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD---------- 262
Query: 487 IVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYNHSEVNKAE----GSAS 542
S G N S++ I I Y SE + E +
Sbjct: 263 -----------------------SNGKNRSSARILQIIKGKDYE-SEPSLLEFKPFSNGP 298
Query: 543 ITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCD--RDSPIQ 600
+ GG+ YR +YG Y++ D +GNF T + S ++ P+
Sbjct: 299 LVGGFVYRGCQSERLYGSYVFGD--------------RNGNFLTLQQSPVTKQWQEKPLC 344
Query: 601 CDTVKGSSFPSLGFITSFGQDNRKDIYLLAS--------NG-VYRVVRPSR 642
T G I FG+D ++Y+L+S NG +Y++V P R
Sbjct: 345 LGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSXTQTHNGKLYKIVDPKR 395
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 181/471 (38%), Gaps = 130/471 (27%)
Query: 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDL 259
C+++V +G + + DGS R+F+ ++G + T PE G + P+LD+
Sbjct: 25 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDI 76
Query: 260 TDQVHADV----ELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPS 315
V + + E G++ +AFHPN+++NG+ +VS+ ++ W
Sbjct: 77 HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW------------------ 118
Query: 316 KLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQIL 375
P + + E+ TV + V R L + H GGQ+L
Sbjct: 119 ------AIGPHDHILRVVEY------TVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL 166
Query: 376 FGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVD----KIPSAKEISDLGLWG 431
FGP DG LY ++GDG D G ++RLDVD +P
Sbjct: 167 FGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP------------ 213
Query: 432 NYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSY-----FLCADVGQDEYEEVD 486
YSIP NP+ PE++A G +P RC+ D LC+D
Sbjct: 214 -YSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD---------- 262
Query: 487 IVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYNHSEVNKAE----GSAS 542
S G N S++ I I Y SE + E +
Sbjct: 263 -----------------------SNGKNRSSARILQIIKGKDYE-SEPSLLEFKPFSNGP 298
Query: 543 ITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCD--RDSPIQ 600
+ GG+ YR +YG Y++ D +GNF T + S ++ P+
Sbjct: 299 LVGGFVYRGCQSERLYGSYVFGD--------------RNGNFLTLQQSPVTKQWQEKPLC 344
Query: 601 CDTVKGSSFPSLGFITSFGQDNRKDIYLLAS--------NG-VYRVVRPSR 642
T G I FG+D ++Y+L+S NG +Y++V P R
Sbjct: 345 LGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 395
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 181/471 (38%), Gaps = 130/471 (27%)
Query: 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDL 259
C+++V +G + + DGS R+F+ ++G + T PE G + P+LD+
Sbjct: 4 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDI 55
Query: 260 TDQVHADV----ELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPS 315
V + + E G++ +AFHPN+++NG+ +VS+ ++ W
Sbjct: 56 HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW------------------ 97
Query: 316 KLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQIL 375
P + + E+ TV + V R L + H GGQ+L
Sbjct: 98 ------AIGPHDHILRVVEY------TVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL 145
Query: 376 FGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVD----KIPSAKEISDLGLWG 431
FGP DG LY ++GDG D G ++RLDVD +P
Sbjct: 146 FGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP------------ 192
Query: 432 NYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSY-----FLCADVGQDEYEEVD 486
YSIP NP+ PE++A G +P RC+ D LC+D
Sbjct: 193 -YSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD---------- 241
Query: 487 IVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYNHSEVNKAE----GSAS 542
S G N S++ I I Y SE + E +
Sbjct: 242 -----------------------SNGKNRSSARILQIIKGKDYE-SEPSLLEFKPFSNGP 277
Query: 543 ITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCD--RDSPIQ 600
+ GG+ YR +YG Y++ D +GNF T + S ++ P+
Sbjct: 278 LVGGFVYRGCQSERLYGSYVFGD--------------RNGNFLTLQQSPVTKQWQEKPLC 323
Query: 601 CDTVKGSSFPSLGFITSFGQDNRKDIYLLAS--------NG-VYRVVRPSR 642
T G I FG+D ++Y+L+S NG +Y++V P R
Sbjct: 324 LGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 181/471 (38%), Gaps = 130/471 (27%)
Query: 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDL 259
C+++V +G + + DGS R+F+ ++G + T PE G + P+LD+
Sbjct: 4 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDI 55
Query: 260 TDQVHADV----ELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPS 315
V + + E G++ +AFHPN+++NG+ +VS+ ++ W
Sbjct: 56 HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW------------------ 97
Query: 316 KLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQIL 375
P + + E+ TV + V R L + H GGQ+L
Sbjct: 98 ------AIGPHDHILRVVEY------TVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL 145
Query: 376 FGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVD----KIPSAKEISDLGLWG 431
FGP DG LY ++GDG D G ++RLDVD +P
Sbjct: 146 FGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP------------ 192
Query: 432 NYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSY-----FLCADVGQDEYEEVD 486
YSIP NP+ PE++A G +P RC+ D LC+D
Sbjct: 193 -YSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD---------- 241
Query: 487 IVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYNHSEVNKAE----GSAS 542
S G N S++ I I Y SE + E +
Sbjct: 242 -----------------------SNGKNRSSARILQIIKGKDYE-SEPSLLEFKPFSNGP 277
Query: 543 ITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCD--RDSPIQ 600
+ GG+ YR +YG Y++ D +GNF T + S ++ P+
Sbjct: 278 LVGGFVYRGCQSERLYGSYVFGD--------------RNGNFLTLQQSPVTKQWQEKPLC 323
Query: 601 CDTVKGSSFPSLGFITSFGQDNRKDIYLLAS--------NG-VYRVVRPSR 642
T G I FG+D ++Y+L+S NG +Y++V P R
Sbjct: 324 LGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 181/471 (38%), Gaps = 130/471 (27%)
Query: 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDL 259
C+++V +G + + DGS R+F+ ++G + T PE G + P+LD+
Sbjct: 4 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDI 55
Query: 260 TDQVHADV----ELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPS 315
V + + E G++ +AFHPN+++NG+ +VS+ ++ W
Sbjct: 56 HKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERW------------------ 97
Query: 316 KLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQIL 375
P + + E+ TV + V R L + H GGQ+L
Sbjct: 98 ------AIGPHDHILRVVEY------TVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLL 145
Query: 376 FGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVD----KIPSAKEISDLGLWG 431
FGP DG LY ++GDG D G ++RLDVD +P
Sbjct: 146 FGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP------------ 192
Query: 432 NYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSY-----FLCADVGQDEYEEVD 486
YSIP NP+ PE++A G +P RC+ D LC+D
Sbjct: 193 -YSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD---------- 241
Query: 487 IVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYNHSEVNKAE----GSAS 542
S G N S++ I I Y SE + E +
Sbjct: 242 -----------------------SNGKNRSSARILQIIKGKDYE-SEPSLLEFKPFSNGP 277
Query: 543 ITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCD--RDSPIQ 600
+ GG+ YR +YG Y++ D +GNF T + S ++ P+
Sbjct: 278 LVGGFVYRGCQSERLYGSYVFGD--------------RNGNFLTLQQSPVTKQWQEKPLC 323
Query: 601 CDTVKGSSFPSLGFITSFGQDNRKDIYLLAS--------NG-VYRVVRPSR 642
T G I FG+D ++Y+L+S NG +Y++V P R
Sbjct: 324 LGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|3A9G|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Apo-Form
pdb|3A9H|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Holo-Form
Length = 354
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 29/134 (21%)
Query: 369 HHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLG 428
H+GG+I FGP DG LY GD DP +Q+ SL GKI+R+D + P
Sbjct: 135 HNGGRIRFGP-DGMLYITTGDAA---DP-RLAQDLSSLAGKILRVDEEGRP--------- 180
Query: 429 LWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCA-DVGQDEYEEVDI 487
PADNP+ IW+ G RNP D R S + A + G ++EV+I
Sbjct: 181 -------PADNPFPNSP-----IWSYGHRNP--QGIDWHRASGVMVATEHGPVGHDEVNI 226
Query: 488 VTKGGNYGWRVYEG 501
+ KGGNYGW + G
Sbjct: 227 ILKGGNYGWPLATG 240
>pdb|1CRU|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1CRU|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1QBI|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1QBI|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1C9U|A Chain A, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1C9U|B Chain B, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1CQ1|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
pdb|1CQ1|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
Length = 454
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 85/290 (29%)
Query: 231 DGKTWLATVPEPGSGSKLELDESNPFLDLTDQV-----HADVELGMMGIAFHPNFQQNGR 285
D + WL E +G L ++ + + QV AD + G++G AFHP+F+ N
Sbjct: 37 DNQIWLT---ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93
Query: 286 FFVS--FNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTV 343
++S F K S + +P Q ++I ++ N
Sbjct: 94 IYISGTFKNPK------------------------STDKELPNQ--TIIRRYTYN----- 122
Query: 344 QHSSVASVKPLEVRRILTMGLHFTS-HHGGQILFGPEDGHLYFMVGDGEGRGD-PYNFSQ 401
S LE L GL + H G+++ GP D +Y+ +GD +GR Y F
Sbjct: 123 -----KSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD-QGRNQLAYLFLP 175
Query: 402 NK---------------KSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQ 446
N+ + +GK++RL++D SIP DNP
Sbjct: 176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDG----------------SIPKDNPSFNG-- 217
Query: 447 LQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNYGW 496
+ I+ LG RNP +F L ++ G + +E++++ KGGNYGW
Sbjct: 218 VVSHIYTLGHRNPQGLAFTPN--GKLLQSEQGPNSDDEINLIVKGGNYGW 265
>pdb|2ISM|A Chain A, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
pdb|2ISM|B Chain B, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
Length = 352
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 369 HHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLG 428
H GG+I FGP DG LY G+ R +Q+ SL GKI+RL + P+
Sbjct: 135 HSGGRIAFGP-DGMLYVTTGEVYER----ELAQDLASLGGKILRLTPEGEPAP------- 182
Query: 429 LWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDE----YEE 484
NP+ + +PE+++LG RNP ++ + F E ++E
Sbjct: 183 ---------GNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE 233
Query: 485 VDIVTKGGNYGW-RV--------YEGPFRYNPPSSPGGNTS 516
V+++ GGNYGW RV Y P + P P GN +
Sbjct: 234 VNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLA 274
>pdb|2G8S|A Chain A, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
pdb|2G8S|B Chain B, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
Length = 353
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 116/295 (39%), Gaps = 71/295 (24%)
Query: 263 VHADVELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNG 322
V A + G++ + P+F Q+ R ++S++ E T VG
Sbjct: 60 VWAHGQGGLLDVVLAPDFAQSRRIWLSYS-------EVGDDGKAGTAVGY---------- 102
Query: 323 AMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTSHHGGQILFGPEDGH 382
S + +K +V P L+ G HF GG+++F DG
Sbjct: 103 ----------GRLSDDLSKVTDFRTVFRQXPK-----LSTGNHF----GGRLVF---DGK 140
Query: 383 LYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYS 442
Y + GE P +Q+ L GK++RL +D G IP DNP+
Sbjct: 141 GYLFIALGENNQRPT--AQDLDKLQGKLVRL-----------TDQG-----EIPDDNPFI 182
Query: 443 EDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNYGWRVYEGP 502
++ ++ EIW+ G RNP + + + +L + G +E++I KG NYGW +
Sbjct: 183 KESGVRAEIWSYGIRNPQGXAXNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWG 241
Query: 503 FRYNPPSSP--GGNTSASSINPIFPVMGYNHSEVNKAEGSASITGGYFYRSQTDP 555
Y+ P G A + P+F + S +++G FY S P
Sbjct: 242 INYSGFKIPEAKGEIVAGTEQPVF-----------YWKDSPAVSGXAFYNSDKFP 285
>pdb|3DAS|A Chain A, Structure Of The Pqq-Bound Form Of Aldose Sugar
Dehydrogenase (Adh) From Streptomyces Coelicolor
Length = 347
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 28/133 (21%)
Query: 369 HHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLG 428
H+GG+I FGP D LY G+ GD SQ++KSL GKI+R D P+
Sbjct: 140 HNGGRIAFGP-DKXLYAGTGE---SGD-TGLSQDRKSLGGKILRXTPDGEPAPG------ 188
Query: 429 LWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIV 488
NP+ +++ G RN ++D ++ ++ GQD ++E++ +
Sbjct: 189 ----------NPFPGSP-----VYSYGHRNVQGLAWDDKQ--RLFASEFGQDTWDELNAI 231
Query: 489 TKGGNYGWRVYEG 501
G NYGW EG
Sbjct: 232 KPGDNYGWPEAEG 244
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 120 AAINFCSKVWDECHNVSISSSPFSL--QGRDARLV----NSTSKLTDLWPSKSAFCNEFG 173
+A NF +V HNV I + L G DA + NS+ + + +W +
Sbjct: 82 SAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLT 141
Query: 174 GASGDGLVCFDGG 186
SG G FDGG
Sbjct: 142 KCSGAGDASFDGG 154
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 120 AAINFCSKVWDECHNVSISSSPFSL--QGRDARLV----NSTSKLTDLWPSKSAFCNEFG 173
+A NF +V HNV I + L G DA + NS+ + + +W +
Sbjct: 82 SAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLT 141
Query: 174 GASGDGLVCFDGG 186
SG G FDGG
Sbjct: 142 KCSGAGDASFDGG 154
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 120 AAINFCSKVWDECHNVSISSSPFSL--QGRDARLV----NSTSKLTDLWPSKSAFCNEFG 173
+A NF +V HNV I + L G DA + NS+ + + +W +
Sbjct: 82 SAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLT 141
Query: 174 GASGDGLVCFDGG 186
SG G FDGG
Sbjct: 142 KCSGAGDASFDGG 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,781,695
Number of Sequences: 62578
Number of extensions: 1001508
Number of successful extensions: 2437
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 49
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)