Query 005419
Match_columns 697
No_of_seqs 283 out of 1683
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07995 GSDH: Glucose / Sorbo 100.0 3.2E-60 6.9E-65 508.7 33.5 322 213-636 5-331 (331)
2 TIGR03606 non_repeat_PQQ dehyd 100.0 4E-59 8.8E-64 515.2 40.0 348 197-632 15-425 (454)
3 COG2133 Glucose/sorbosone dehy 100.0 5.2E-48 1.1E-52 419.0 31.1 334 199-640 54-397 (399)
4 TIGR02604 Piru_Ver_Nterm putat 100.0 1.1E-32 2.4E-37 299.4 32.6 319 201-640 1-366 (367)
5 PF03024 Folate_rec: Folate re 99.5 3.2E-15 7E-20 146.6 0.0 95 26-137 1-113 (167)
6 PF08450 SGL: SMP-30/Gluconola 98.4 0.00045 9.8E-09 70.8 27.6 237 214-631 4-245 (246)
7 PLN02919 haloacid dehalogenase 97.9 0.0075 1.6E-07 75.1 30.2 71 559-640 815-887 (1057)
8 PF08450 SGL: SMP-30/Gluconola 97.7 0.0025 5.4E-08 65.4 17.8 147 213-476 89-244 (246)
9 PF10282 Lactonase: Lactonase, 97.3 0.012 2.7E-07 63.9 18.1 168 213-483 147-317 (345)
10 PLN02919 haloacid dehalogenase 95.0 0.85 1.8E-05 57.3 18.5 32 453-486 855-886 (1057)
11 PRK11028 6-phosphogluconolacto 93.8 7.5 0.00016 41.5 20.2 64 213-290 129-193 (330)
12 COG2706 3-carboxymuconate cycl 93.6 3.2 6.9E-05 45.7 16.7 158 215-478 150-311 (346)
13 KOG4659 Uncharacterized conser 93.5 1.6 3.6E-05 54.5 15.6 47 597-643 517-564 (1899)
14 COG3386 Gluconolactonase [Carb 92.9 3.5 7.6E-05 44.9 15.8 73 372-481 114-186 (307)
15 TIGR02604 Piru_Ver_Nterm putat 92.6 1.4 3E-05 48.6 12.5 77 203-291 63-142 (367)
16 PRK11028 6-phosphogluconolacto 91.2 21 0.00045 38.1 19.2 61 213-290 83-144 (330)
17 PF10282 Lactonase: Lactonase, 90.6 4.2 9.2E-05 44.3 13.5 72 209-290 190-263 (345)
18 TIGR03866 PQQ_ABC_repeats PQQ- 90.5 17 0.00036 36.8 17.1 26 213-239 160-186 (300)
19 COG4257 Vgb Streptogramin lyas 89.8 12 0.00027 40.4 15.5 51 363-441 226-277 (353)
20 PF06977 SdiA-regulated: SdiA- 89.2 9.1 0.0002 40.5 14.1 79 201-289 53-135 (248)
21 COG4257 Vgb Streptogramin lyas 89.0 12 0.00026 40.5 14.6 39 202-243 53-93 (353)
22 COG3386 Gluconolactonase [Carb 88.6 12 0.00026 40.8 14.9 145 199-417 150-299 (307)
23 COG4946 Uncharacterized protei 88.4 8.7 0.00019 44.0 13.8 66 202-289 392-460 (668)
24 PF07995 GSDH: Glucose / Sorbo 87.9 6.2 0.00014 43.0 12.3 28 201-230 170-200 (331)
25 TIGR03606 non_repeat_PQQ dehyd 84.6 19 0.00041 41.4 14.4 38 447-489 20-57 (454)
26 COG3391 Uncharacterized conser 84.0 76 0.0016 35.3 19.2 67 203-290 108-178 (381)
27 PF06977 SdiA-regulated: SdiA- 83.4 5.8 0.00013 41.9 9.0 67 213-290 121-189 (248)
28 TIGR02658 TTQ_MADH_Hv methylam 82.5 74 0.0016 35.5 17.5 76 367-480 244-322 (352)
29 TIGR02658 TTQ_MADH_Hv methylam 80.2 19 0.00042 40.0 12.0 21 368-389 298-320 (352)
30 PF01436 NHL: NHL repeat; Int 80.0 3.7 8.1E-05 28.6 4.2 24 613-636 2-27 (28)
31 PF01436 NHL: NHL repeat; Int 78.6 2.9 6.3E-05 29.2 3.3 23 456-480 1-23 (28)
32 COG3204 Uncharacterized protei 78.5 82 0.0018 34.5 15.5 67 214-290 133-199 (316)
33 KOG0315 G-protein beta subunit 76.2 81 0.0018 33.9 14.3 27 214-241 129-155 (311)
34 PRK04043 tolB translocation pr 73.5 1.7E+02 0.0036 33.2 21.4 42 198-239 175-220 (419)
35 KOG0282 mRNA splicing factor [ 73.2 29 0.00063 39.8 10.9 115 159-293 239-363 (503)
36 PF07494 Reg_prop: Two compone 72.4 5.2 0.00011 27.0 3.1 20 613-632 5-24 (24)
37 PF03088 Str_synth: Strictosid 72.3 12 0.00025 33.7 6.2 75 374-480 3-79 (89)
38 smart00135 LY Low-density lipo 71.4 6.5 0.00014 28.6 3.8 31 451-482 3-33 (43)
39 KOG4659 Uncharacterized conser 70.7 1.5E+02 0.0032 38.6 16.6 87 372-481 596-684 (1899)
40 PF05787 DUF839: Bacterial pro 68.6 24 0.00051 41.4 9.4 101 373-480 354-457 (524)
41 cd00200 WD40 WD40 domain, foun 65.8 1.2E+02 0.0027 29.1 12.6 58 213-291 181-238 (289)
42 COG2706 3-carboxymuconate cycl 64.7 2.1E+02 0.0046 31.9 15.1 108 169-289 147-261 (346)
43 PTZ00420 coronin; Provisional 64.4 1.5E+02 0.0032 35.3 14.9 59 213-279 78-136 (568)
44 PF13449 Phytase-like: Esteras 62.2 1.6E+02 0.0034 32.1 13.8 21 369-390 145-168 (326)
45 TIGR00917 2A060601 Niemann-Pic 62.1 9.9 0.00022 48.7 5.1 110 24-139 15-138 (1204)
46 TIGR03866 PQQ_ABC_repeats PQQ- 60.2 1.9E+02 0.0042 29.0 14.6 26 213-239 34-60 (300)
47 PF05787 DUF839: Bacterial pro 59.0 2.2E+02 0.0047 33.6 14.9 21 271-294 352-372 (524)
48 PTZ00421 coronin; Provisional 57.1 1.8E+02 0.0039 33.8 13.8 57 213-279 79-136 (493)
49 PRK02889 tolB translocation pr 56.6 3E+02 0.0066 30.9 15.3 26 213-238 287-314 (427)
50 KOG1214 Nidogen and related ba 52.5 2.7E+02 0.0059 34.6 14.1 33 448-481 1102-1134(1289)
51 PRK05137 tolB translocation pr 52.1 3.5E+02 0.0077 30.3 14.9 17 118-134 143-159 (435)
52 KOG0289 mRNA splicing factor [ 51.5 79 0.0017 36.2 9.2 86 171-291 317-408 (506)
53 PF02239 Cytochrom_D1: Cytochr 49.4 4.1E+02 0.009 29.6 19.8 67 203-290 28-96 (369)
54 PF03022 MRJP: Major royal jel 48.3 3.3E+02 0.0072 29.3 13.3 197 214-497 5-236 (287)
55 PRK01029 tolB translocation pr 47.1 4.7E+02 0.01 29.6 16.0 27 213-239 284-312 (428)
56 COG2133 Glucose/sorbosone dehy 47.0 48 0.001 37.7 6.8 65 213-291 180-258 (399)
57 TIGR03032 conserved hypothetic 46.3 1.1E+02 0.0023 34.0 9.0 112 159-294 135-263 (335)
58 PRK02888 nitrous-oxide reducta 45.9 1.2E+02 0.0025 36.6 10.0 76 205-292 315-394 (635)
59 PRK01742 tolB translocation pr 45.2 3.7E+02 0.0081 30.2 13.7 38 201-239 193-235 (429)
60 PRK04922 tolB translocation pr 44.0 4.5E+02 0.0096 29.6 14.1 26 213-238 295-322 (433)
61 TIGR03118 PEPCTERM_chp_1 conse 43.9 16 0.00034 40.1 2.3 30 450-481 16-45 (336)
62 PTZ00421 coronin; Provisional 42.2 3.7E+02 0.0081 31.3 13.3 57 213-289 129-185 (493)
63 KOG0266 WD40 repeat-containing 41.2 2.9E+02 0.0062 31.6 12.1 58 213-291 207-265 (456)
64 PF14870 PSII_BNR: Photosynthe 41.1 57 0.0012 35.6 6.1 59 213-288 190-248 (302)
65 KOG2919 Guanine nucleotide-bin 40.8 1.5E+02 0.0033 32.9 9.1 100 213-386 162-268 (406)
66 KOG0272 U4/U6 small nuclear ri 40.5 2.9E+02 0.0062 31.8 11.3 54 213-290 307-363 (459)
67 TIGR02800 propeller_TolB tol-p 39.0 5.5E+02 0.012 28.0 19.5 26 213-239 193-221 (417)
68 PRK03629 tolB translocation pr 38.4 3.8E+02 0.0082 30.2 12.4 26 213-239 246-274 (429)
69 PRK02889 tolB translocation pr 37.6 6.4E+02 0.014 28.3 18.7 26 213-239 199-227 (427)
70 PF00400 WD40: WD domain, G-be 37.5 1.3E+02 0.0027 21.3 5.7 24 213-237 15-38 (39)
71 COG3204 Uncharacterized protei 37.5 4.1E+02 0.009 29.3 11.7 24 213-237 184-207 (316)
72 PRK01029 tolB translocation pr 37.4 6.6E+02 0.014 28.5 18.4 27 213-239 188-218 (428)
73 KOG0641 WD40 repeat protein [G 35.3 1.9E+02 0.0041 30.7 8.5 21 267-291 31-51 (350)
74 KOG0266 WD40 repeat-containing 34.8 7.3E+02 0.016 28.3 14.4 69 201-291 236-307 (456)
75 PF08662 eIF2A: Eukaryotic tra 34.5 3.8E+02 0.0082 26.9 10.5 58 213-293 104-164 (194)
76 COG3292 Predicted periplasmic 34.1 50 0.0011 39.0 4.5 42 612-653 246-287 (671)
77 KOG2055 WD40 repeat protein [G 33.1 3.5E+02 0.0075 31.5 10.6 26 214-239 262-287 (514)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.8 1.5E+02 0.0032 34.8 8.2 85 372-473 237-339 (527)
79 COG3211 PhoX Predicted phospha 31.3 4.8E+02 0.01 31.3 11.6 20 272-294 420-439 (616)
80 PRK04792 tolB translocation pr 30.3 8.6E+02 0.019 27.6 14.3 26 213-239 265-293 (448)
81 KOG0263 Transcription initiati 30.0 3.3E+02 0.0072 33.2 10.3 27 356-390 569-597 (707)
82 TIGR03074 PQQ_membr_DH membran 28.6 1.2E+03 0.026 28.9 18.7 99 373-474 379-484 (764)
83 TIGR03803 Gloeo_Verruco Gloeo_ 27.9 91 0.002 23.3 3.4 26 380-417 1-26 (34)
84 COG3211 PhoX Predicted phospha 27.4 2.5E+02 0.0053 33.5 8.5 99 373-480 421-521 (616)
85 KOG1445 Tumor-specific antigen 27.2 4.6E+02 0.01 31.8 10.5 52 191-243 609-661 (1012)
86 KOG2055 WD40 repeat protein [G 26.3 5.9E+02 0.013 29.7 10.9 26 213-239 348-373 (514)
87 PF06739 SBBP: Beta-propeller 26.3 67 0.0015 24.1 2.6 18 614-631 14-31 (38)
88 PTZ00420 coronin; Provisional 25.7 1E+03 0.022 28.4 13.5 55 213-289 129-184 (568)
89 KOG0271 Notchless-like WD40 re 25.5 4.4E+02 0.0096 30.1 9.6 53 213-281 161-213 (480)
90 PRK03629 tolB translocation pr 25.3 1E+03 0.022 26.8 21.7 39 201-239 188-230 (429)
91 cd00200 WD40 WD40 domain, foun 25.2 6.1E+02 0.013 24.2 13.6 50 213-279 55-104 (289)
92 KOG0295 WD40 repeat-containing 24.4 6.1E+02 0.013 28.8 10.4 52 220-291 302-353 (406)
93 PF10313 DUF2415: Uncharacteri 23.9 1.6E+02 0.0035 23.2 4.3 27 213-239 4-32 (43)
94 PF15145 DUF4577: Domain of un 23.6 1E+02 0.0022 29.0 3.8 28 619-653 12-40 (128)
95 PF00058 Ldl_recept_b: Low-den 23.6 1.1E+02 0.0024 23.2 3.4 31 408-466 12-42 (42)
96 PRK01742 tolB translocation pr 23.4 6.7E+02 0.014 28.1 11.1 16 372-388 375-390 (429)
97 PF14727 PHTB1_N: PTHB1 N-term 22.4 7E+02 0.015 28.6 10.9 59 218-278 33-96 (418)
98 KOG0272 U4/U6 small nuclear ri 22.3 4.1E+02 0.009 30.5 8.8 61 213-293 221-282 (459)
99 PRK05137 tolB translocation pr 22.2 1.1E+03 0.024 26.3 21.1 41 199-239 189-233 (435)
100 KOG0640 mRNA cleavage stimulat 22.1 4.1E+02 0.0089 29.6 8.4 59 213-291 176-235 (430)
101 PRK04792 tolB translocation pr 22.0 1.2E+03 0.026 26.5 19.3 39 201-239 207-249 (448)
102 PF07676 PD40: WD40-like Beta 22.0 2.1E+02 0.0046 20.6 4.6 19 213-231 12-30 (39)
103 PF15416 DUF4623: Domain of un 21.2 1.2E+03 0.027 26.3 12.9 38 364-417 232-272 (442)
104 PF03088 Str_synth: Strictosid 20.7 2.8E+02 0.0061 24.9 5.9 40 199-239 44-86 (89)
No 1
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=100.00 E-value=3.2e-60 Score=508.66 Aligned_cols=322 Identities=33% Similarity=0.584 Sum_probs=238.3
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEee
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFNC 292 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~ 292 (697)
|.|+++||| ||||+||.|+||+++ .+|+. ..++.++. +|...+|+|||||||||+|.+|++|||+|+.
T Consensus 5 ~~~a~~pdG--~l~v~e~~G~i~~~~--~~g~~-------~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 5 RSMAFLPDG--RLLVAERSGRIWVVD--KDGSL-------KTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEETTS--CEEEEETTTEEEEEE--TTTEE-------CEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred eEEEEeCCC--cEEEEeCCceEEEEe--CCCcC-------cceecccc-cccccccCCcccceeccccCCCCEEEEEEEc
Confidence 899999998 899999999999986 33431 22344553 6778899999999999999999999999997
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeeccCC---CCc
Q 005419 293 DKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHF---TSH 369 (697)
Q Consensus 293 ~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~~P~---~~H 369 (697)
..... ....++|+||+.+.. .....+.++|++ ++|. ..|
T Consensus 73 ~~~~~----------------------------~~~~~~v~r~~~~~~---------~~~~~~~~~l~~-~~p~~~~~~H 114 (331)
T PF07995_consen 73 ADEDG----------------------------GDNDNRVVRFTLSDG---------DGDLSSEEVLVT-GLPDTSSGNH 114 (331)
T ss_dssp E-TSS----------------------------SSEEEEEEEEEEETT---------SCEEEEEEEEEE-EEES-CSSSS
T ss_pred ccCCC----------------------------CCcceeeEEEeccCC---------ccccccceEEEE-EeCCCCCCCC
Confidence 52110 013579999998643 123345666765 4554 679
Q ss_pred cceeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCC
Q 005419 370 HGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQP 449 (697)
Q Consensus 370 ~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~p 449 (697)
+|++|.|+| ||+|||++||.++ ...+|+++++.||||||++|| +||.||||++.++...
T Consensus 115 ~g~~l~fgp-DG~LYvs~G~~~~----~~~~~~~~~~~G~ilri~~dG----------------~~p~dnP~~~~~~~~~ 173 (331)
T PF07995_consen 115 NGGGLAFGP-DGKLYVSVGDGGN----DDNAQDPNSLRGKILRIDPDG----------------SIPADNPFVGDDGADS 173 (331)
T ss_dssp -EEEEEE-T-TSEEEEEEB-TTT----GGGGCSTTSSTTEEEEEETTS----------------SB-TTSTTTTSTTSTT
T ss_pred CCccccCCC-CCcEEEEeCCCCC----cccccccccccceEEEecccC----------------cCCCCCccccCCCceE
Confidence 999999999 9999999999886 257999999999999999998 7999999999889999
Q ss_pred eEEEeccccceeeeecCCCCCeEEEEEcCCCCceeeEEeccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccceeee
Q 005419 450 EIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGY 529 (697)
Q Consensus 450 EI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p~g~~~~~~~~~~~Pi~~y 529 (697)
||||+|||||+||+|||.++ +||++|||++.+||||+|++|+|||||.+++...+.... .... .....++.|++.|
T Consensus 174 ~i~A~GlRN~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~--~~~~-~~~~~~~~P~~~~ 249 (331)
T PF07995_consen 174 EIYAYGLRNPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP--IGDA-PSCPGFVPPVFAY 249 (331)
T ss_dssp TEEEE--SEEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---ECTG-SS-TTS---SEEE
T ss_pred EEEEeCCCccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc--cccc-cCCCCcCccceee
Confidence 99999999999999999987 699999999999999999999999999999876654321 0011 1123578999999
Q ss_pred cCCccCCCCCCcccceeEeecCCCCcccCCcEEEEEcccCeeEEeecCCCCCCCeeEEEEeeccCCCCCccccccccccc
Q 005419 530 NHSEVNKAEGSASITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCDRDSPIQCDTVKGSSF 609 (697)
Q Consensus 530 ~H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~ylfgD~~~G~lw~~~~~p~~~G~~~~~~i~f~~~~~~p~~c~~~~g~~~ 609 (697)
+|. .||+|+.||+|++||+|+|.||++|+..++||++..++. +.....+. ++ .
T Consensus 250 ~~~--------~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-------------~~----~ 302 (331)
T PF07995_consen 250 PPH--------SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED--GSVTEEEE-------------FL----G 302 (331)
T ss_dssp TTT----------EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEEEE-------------EC----T
T ss_pred cCc--------cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC--CCccceEE-------------cc----c
Confidence 763 899999999999999999999999999999999987543 32222211 11 1
Q ss_pred CCCCceeeEEEcCCCcEEEEec--CeEEE
Q 005419 610 PSLGFITSFGQDNRKDIYLLAS--NGVYR 636 (697)
Q Consensus 610 ~~~grI~sf~ed~dGeLYvlts--~gIYR 636 (697)
...+||++|+++|||+|||+++ +.|||
T Consensus 303 ~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 303 GFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp TSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred cCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 2245999999999999999987 45998
No 2
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=100.00 E-value=4e-59 Score=515.18 Aligned_cols=348 Identities=22% Similarity=0.426 Sum_probs=257.7
Q ss_pred CCCCCcEEEEEecCce--eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceee
Q 005419 197 SPPSGLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMG 273 (697)
Q Consensus 197 ~~p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLG 273 (697)
+.|.+|.+|+|++||. |.|++.||| ||||+|| .|+|++++ ++++. .++++++...+...+|+||||
T Consensus 15 ~~p~~f~~~~va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~-~~~~~--------~~~~~~l~~v~~~~ge~GLlg 83 (454)
T TIGR03606 15 AASENFDKKVLLSGLNKPWALLWGPDN--QLWVTERATGKILRVN-PETGE--------VKVVFTLPEIVNDAQHNGLLG 83 (454)
T ss_pred cCCCCcEEEEEECCCCCceEEEEcCCC--eEEEEEecCCEEEEEe-CCCCc--------eeeeecCCceeccCCCCceee
Confidence 3488999999999999 999999999 8999999 69999985 33222 233456643333337999999
Q ss_pred eEeCCCC---CcCCeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccc
Q 005419 274 IAFHPNF---QQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVAS 350 (697)
Q Consensus 274 iAfhPdF---~~NG~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~ 350 (697)
|||||+| ++|++|||+|+...... ..+ ...+|+||+++.. .
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~~~-------------------------~~~--~~~~I~R~~l~~~---------~ 127 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNGDK-------------------------ELP--NHTKIVRYTYDKS---------T 127 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCCCC-------------------------Ccc--CCcEEEEEEecCC---------C
Confidence 9999999 99999999999643110 000 1369999998642 1
Q ss_pred cCCCceEEEEeeccCC-CCccceeeEeCCCCCeEEEEecCCCCCC-----CCc----------cccccccCCCceEEEEe
Q 005419 351 VKPLEVRRILTMGLHF-TSHHGGQILFGPEDGHLYFMVGDGEGRG-----DPY----------NFSQNKKSLLGKIMRLD 414 (697)
Q Consensus 351 ~~~~~~r~Il~~~~P~-~~H~GG~L~FGP~DG~LYis~GDgg~~~-----DP~----------~~aQn~~sl~GKILRId 414 (697)
....++++|++ ++|. .+|+||+|+|+| ||+|||++||++... .|. .++||+++++|||||||
T Consensus 128 ~~l~~~~~Il~-~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin 205 (454)
T TIGR03606 128 QTLEKPVDLLA-GLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLN 205 (454)
T ss_pred CccccceEEEe-cCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEc
Confidence 12345677775 6775 479999999999 999999999997421 120 12348899999999999
Q ss_pred cCCCCcccccccccCCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEcCCCCceeeEEeccCCCC
Q 005419 415 VDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNY 494 (697)
Q Consensus 415 vDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn~I~kG~NY 494 (697)
+|| +||+||||++ ++++||||||||||||++||| ++ +||++|||++.+||||+|++|+||
T Consensus 206 ~DG----------------siP~dNPf~~--g~~~eIyA~G~RNp~Gla~dp-~G-~Lw~~e~Gp~~~DEiN~I~~G~NY 265 (454)
T TIGR03606 206 LDG----------------SIPKDNPSIN--GVVSHIFTYGHRNPQGLAFTP-DG-TLYASEQGPNSDDELNIIVKGGNY 265 (454)
T ss_pred CCC----------------CCCCCCCccC--CCcceEEEEeccccceeEECC-CC-CEEEEecCCCCCcEEEEeccCCcC
Confidence 999 8999999984 678999999999999999999 66 599999999999999999999999
Q ss_pred CcccccCCC--------CCCCCC-----------CCCCC-----CCCCCCCCccceeeec--------CCccC-----CC
Q 005419 495 GWRVYEGPF--------RYNPPS-----------SPGGN-----TSASSINPIFPVMGYN--------HSEVN-----KA 537 (697)
Q Consensus 495 GWP~~eG~~--------~~~p~~-----------~p~g~-----~~~~~~~~~~Pi~~y~--------H~~~~-----~~ 537 (697)
|||.++|.. .|.... .+.+. +.....+++.|++.|- |.-.. ..
T Consensus 266 GWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (454)
T TIGR03606 266 GWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYNYNDATCGEMTYIC 345 (454)
T ss_pred CCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceecccccccccccccccccccccc
Confidence 999998732 222110 00010 0111125889997411 11000 01
Q ss_pred CCCcccceeEeec--CCCCcccCCcEEEEEcccCeeEEeecCCCCCCCee-EEEEeeccCCCCCcccccccccccCCCCc
Q 005419 538 EGSASITGGYFYR--SQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFS-TTKLSVSCDRDSPIQCDTVKGSSFPSLGF 614 (697)
Q Consensus 538 ~Gs~S~tGg~vYr--G~~fP~l~G~ylfgD~~~G~lw~~~~~p~~~G~~~-~~~i~f~~~~~~p~~c~~~~g~~~~~~gr 614 (697)
.++.|++|+.||+ |.+||+|+|.+|++-+..+.|+++..+.+. ++.. .++. ++...+|
T Consensus 346 ~psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~-~~v~~~~~~------------------~~~~~~R 406 (454)
T TIGR03606 346 WPTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDY-STVYGDAVP------------------MFKTNNR 406 (454)
T ss_pred CCCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCc-ceecceeEE------------------eecCCCe
Confidence 3678999999999 689999999999999999999999876431 1111 1111 1112479
Q ss_pred eeeEEEcCCC-cEEEEecC
Q 005419 615 ITSFGQDNRK-DIYLLASN 632 (697)
Q Consensus 615 I~sf~ed~dG-eLYvlts~ 632 (697)
||+|.++||| .|||++++
T Consensus 407 iRdv~~~pDg~~iy~~td~ 425 (454)
T TIGR03606 407 YRDVIASPDGNVLYVATDN 425 (454)
T ss_pred eEEEEECCCCCEEEEEEcC
Confidence 9999999997 99999973
No 3
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-48 Score=419.02 Aligned_cols=334 Identities=25% Similarity=0.392 Sum_probs=258.2
Q ss_pred CCCcEEEEEecCce--eeEEECCCCCceEEEEecC-ceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeE
Q 005419 199 PSGLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQD-GKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIA 275 (697)
Q Consensus 199 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~-G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiA 275 (697)
+.++.++.++.||. |.|++.||| +++|+|+. |.|.++. ..+. . .+-+.-...|...++.|++++|
T Consensus 54 ~~~~~~~~~a~gLe~p~~~~~lP~G--~~~v~er~~G~l~~i~--~g~~---~-----~~~~~~~~~~~~~~~~Gll~~a 121 (399)
T COG2133 54 AKGVSVEVVAQGLEHPWGLARLPDG--VLLVTERPTGRLRLIS--DGGS---A-----SPPVSTVPIVLLRGQGGLLDIA 121 (399)
T ss_pred ccceecccccccccCchhheecCCc--eEEEEccCCccEEEec--CCCc---c-----cccccccceEEeccCCCccceE
Confidence 35789999999988 999999999 89999998 9888763 2221 1 1112222346677899999999
Q ss_pred eCCCCCcCCeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCc
Q 005419 276 FHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLE 355 (697)
Q Consensus 276 fhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~ 355 (697)
++|+|+++..+|.+|+.....-. ..+++++...+.. +.+.++
T Consensus 122 l~~~fa~~~~~~~~~a~~~~~~~-----------------------------~~n~~~~~~~~~g---------~~~l~~ 163 (399)
T COG2133 122 LSPDFAQGRLVYFGISEPGGGLY-----------------------------VANRVAIGRLPGG---------DTKLSE 163 (399)
T ss_pred ecccccccceeeeEEEeecCCce-----------------------------EEEEEEEEEcCCC---------cccccc
Confidence 99999999999999987543210 1244444444321 234567
Q ss_pred eEEEEeeccCCC-CccceeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCcc
Q 005419 356 VRRILTMGLHFT-SHHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYS 434 (697)
Q Consensus 356 ~r~Il~~~~P~~-~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~Ys 434 (697)
.++|++ .+|.. .|+|++|+|+| ||+|||++||.++. ..+|+..++.|||+|++.++ .
T Consensus 164 ~~~i~~-~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~----~~aq~~~~~~Gk~~r~~~a~----------------~ 221 (399)
T COG2133 164 PKVIFR-GIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDP----ALAQDNVSLAGKVLRIDRAG----------------I 221 (399)
T ss_pred ccEEee-cCCCCCCcCcccEEECC-CCcEEEEeCCCCCc----ccccCccccccceeeeccCc----------------c
Confidence 788886 78976 58899999999 99999999997653 37899999999999999998 8
Q ss_pred CCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEcCC---CCceeeEEeccCCCCCcccccCCCCCCCCCCC
Q 005419 435 IPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQ---DEYEEVDIVTKGGNYGWRVYEGPFRYNPPSSP 511 (697)
Q Consensus 435 IP~DNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~---d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p 511 (697)
||.||||.+ +||||+|||||++++|||.++ .||++|||+ -..||||+|++|+|||||++.....+++...+
T Consensus 222 ~~~d~p~~~-----~~i~s~G~RN~qGl~w~P~tg-~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~ 295 (399)
T COG2133 222 IPADNPFPN-----SEIWSYGHRNPQGLAWHPVTG-ALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIP 295 (399)
T ss_pred cccCCCCCC-----cceEEeccCCccceeecCCCC-cEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccC
Confidence 999999986 799999999999999999998 599999999 56899999999999999999877666665433
Q ss_pred CCCCCCCCCCCccceeeecCCccCCCCCCcccceeEeecCCCCcccCCcEEEEEcccCeeEEeecCCCCCCCeeEEEEee
Q 005419 512 GGNTSASSINPIFPVMGYNHSEVNKAEGSASITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSV 591 (697)
Q Consensus 512 ~g~~~~~~~~~~~Pi~~y~H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~ylfgD~~~G~lw~~~~~p~~~G~~~~~~i~f 591 (697)
. .+. ....+.|++.| ..|.|+.|+.||+|+.||+|+|..|++-+.+-. .+...+ .|++++...
T Consensus 296 ~-~~~--~~~~~~p~~~~--------~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~--~~~~~~--~g~~~~~~~-- 358 (399)
T COG2133 296 D-GTV--VAGAIQPVYTW--------APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWP--VLRLRP--DGNYKVVLT-- 358 (399)
T ss_pred C-Ccc--cccccCCceee--------ccccccceeEEecCCcCccccCcEEEEeeccee--EEEecc--CCCcceEEE--
Confidence 3 121 23588999999 345899999999999999988999999875532 233333 355443211
Q ss_pred ccCCCCCcccccccccccCCCCceeeEEEcCCCcEEEEecC---eEEEEecC
Q 005419 592 SCDRDSPIQCDTVKGSSFPSLGFITSFGQDNRKDIYLLASN---GVYRVVRP 640 (697)
Q Consensus 592 ~~~~~~p~~c~~~~g~~~~~~grI~sf~ed~dGeLYvlts~---gIYRIv~p 640 (697)
.|+.+ ..-|||+++.+++||.|||+++. .||||.+-
T Consensus 359 ----------~fl~~---d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 359 ----------GFLSG---DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ----------EEEec---CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 12221 11289999999999999999974 69999863
No 4
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=100.00 E-value=1.1e-32 Score=299.40 Aligned_cols=319 Identities=19% Similarity=0.262 Sum_probs=220.0
Q ss_pred CcEEEEEecC--ce--eeEEECCCCCceEEEEec------------Cc-eEEEEecCCCCCCCcccccCCCCccCcccce
Q 005419 201 GLCLEKVGTG--AY--LNMVPHPDGSNRVFLSNQ------------DG-KTWLATVPEPGSGSKLELDESNPFLDLTDQV 263 (697)
Q Consensus 201 G~~le~va~G--l~--~~m~~~pDGs~RlfV~Eq------------~G-~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V 263 (697)
||+++.+|+. +. +.|++.++| ||||+|. .| +|+++. +.+++|+.. +. .+
T Consensus 1 Gf~~~l~A~~p~~~~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~-d~dgdG~~d---~~--------~v 66 (367)
T TIGR02604 1 GFKVTLFAAEPLLRNPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILE-DADGDGKYD---KS--------NV 66 (367)
T ss_pred CcEEEEEECCCccCCCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEE-cCCCCCCcc---ee--------EE
Confidence 7899999987 55 999999998 8999983 34 898886 344555421 22 23
Q ss_pred eeccCCceeeeEeCCCCCcCCeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCccc
Q 005419 264 HADVELGMMGIAFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTV 343 (697)
Q Consensus 264 ~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~ 343 (697)
..++.....||++++ +| +||.-. ..|.+|+....
T Consensus 67 fa~~l~~p~Gi~~~~----~G-lyV~~~--------------------------------------~~i~~~~d~~g--- 100 (367)
T TIGR02604 67 FAEELSMVTGLAVAV----GG-VYVATP--------------------------------------PDILFLRDKDG--- 100 (367)
T ss_pred eecCCCCccceeEec----CC-EEEeCC--------------------------------------CeEEEEeCCCC---
Confidence 344445569999986 67 888521 25667764322
Q ss_pred ccccccccCCCceEEEEeeccCCC----CccceeeEeCCCCCeEEEEecCCCCC--CCCccccccccCCCceEEEEecCC
Q 005419 344 QHSSVASVKPLEVRRILTMGLHFT----SHHGGQILFGPEDGHLYFMVGDGEGR--GDPYNFSQNKKSLLGKIMRLDVDK 417 (697)
Q Consensus 344 ~~s~~~~~~~~~~r~Il~~~~P~~----~H~GG~L~FGP~DG~LYis~GDgg~~--~DP~~~aQn~~sl~GKILRIdvDg 417 (697)
+ .+++ .+.++|++ +++.. .|....|.|+| ||+|||+.|+.+.. ..|....++.....|+|+|+++|+
T Consensus 101 ---d-g~ad-~~~~~l~~-~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 101 ---D-DKAD-GEREVLLS-GFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred ---C-CCCC-CccEEEEE-ccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 0 1122 13344443 56653 23455899999 99999999986532 112112355567789999999998
Q ss_pred CCcccccccccCCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEcCCCCceeeEEeccCCCCCcc
Q 005419 418 IPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNYGWR 497 (697)
Q Consensus 418 ~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn~I~kG~NYGWP 497 (697)
. ..|+||.|+||||+++||+. | .||++|++....+||+.+.+|+|||||
T Consensus 174 ~-----------------------------~~e~~a~G~rnp~Gl~~d~~-G-~l~~tdn~~~~~~~i~~~~~g~~~g~~ 222 (367)
T TIGR02604 174 G-----------------------------KLRVVAHGFQNPYGHSVDSW-G-DVFFCDNDDPPLCRVTPVAEGGRNGYQ 222 (367)
T ss_pred C-----------------------------eEEEEecCcCCCccceECCC-C-CEEEEccCCCceeEEcccccccccCCC
Confidence 2 24899999999999999995 5 499999988889999999999999999
Q ss_pred cccCCCCCCCCCCCCCCC-----CCCCCCCccceeeecCCccCCCCCCcccceeEeecCCCCc-ccCCcEEEEEcccCee
Q 005419 498 VYEGPFRYNPPSSPGGNT-----SASSINPIFPVMGYNHSEVNKAEGSASITGGYFYRSQTDP-CMYGRYLYTDLYGAAV 571 (697)
Q Consensus 498 ~~eG~~~~~p~~~p~g~~-----~~~~~~~~~Pi~~y~H~~~~~~~Gs~S~tGg~vYrG~~fP-~l~G~ylfgD~~~G~l 571 (697)
...+.....+........ .......++|+..+. ++.|++|+.||+|.+|| +|+|.+|++|+..++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v 294 (367)
T TIGR02604 223 SFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAG--------GGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLI 294 (367)
T ss_pred CCCCcccccccccccccccccccccccccccccccccC--------CCccccEEEEeCCCcCCHHHCCCEEeeeccCCEE
Confidence 876643322211000000 000112445566662 34799999999999999 7999999999999999
Q ss_pred EEeecCCCCCCCeeEEEEeeccCCCCCcccccccccccCCCCceeeEEEcCCCcEEEEe-----------------c-Ce
Q 005419 572 WAGTENPENSGNFSTTKLSVSCDRDSPIQCDTVKGSSFPSLGFITSFGQDNRKDIYLLA-----------------S-NG 633 (697)
Q Consensus 572 w~~~~~p~~~G~~~~~~i~f~~~~~~p~~c~~~~g~~~~~~grI~sf~ed~dGeLYvlt-----------------s-~g 633 (697)
|+++.++++. .++.+.. .++.+. ..++|++++.++|||+|||++ . +.
T Consensus 295 ~~~~l~~~g~-~~~~~~~------------~~l~~~--~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~Gr 359 (367)
T TIGR02604 295 VRYSLEPKGA-GFKGERP------------EFLRSN--DTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSGR 359 (367)
T ss_pred EEEEeecCCC-ccEeecC------------ceEecC--CCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCce
Confidence 9998776543 2433210 122221 246899999999999999998 3 34
Q ss_pred EEEEecC
Q 005419 634 VYRVVRP 640 (697)
Q Consensus 634 IYRIv~p 640 (697)
||||+++
T Consensus 360 IyRi~~~ 366 (367)
T TIGR02604 360 IYRITPK 366 (367)
T ss_pred EEEEccC
Confidence 9999975
No 5
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=99.49 E-value=3.2e-15 Score=146.60 Aligned_cols=95 Identities=25% Similarity=0.659 Sum_probs=0.0
Q ss_pred CCCCCCCCCC---CCCCee-ecc-CCCCccCCchhhHHHHHHhHHh-c--------cCChhhHhhhhhccc-cccccCcc
Q 005419 26 LCTNLRAPFT---PKAPLA-FCQ-YNGSVCCNSTEDQQLQNQFKAM-N--------VSDSGCASLLKSIRC-SRCDQFSS 90 (697)
Q Consensus 26 ~c~d~~~p~~---~~~~l~-fC~-y~~~~cc~~~~d~~~~~~~~~~-~--------~~~~~C~~~~~~ilc-~~c~p~~a 90 (697)
+|+|+++|++ |...|. ||. |..++||++..+.+|.+++.++ . .....|.+++++++| ++||||++
T Consensus 1 ~Cl~~~~~k~~P~pe~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~ 80 (167)
T PF03024_consen 1 QCLDGKPHKRSPGPEPDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAG 80 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCChhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccc
Confidence 6999999998 345587 997 9999999999999999998864 1 247889999999999 99999999
Q ss_pred cccccCC---CCcccccccCCCccCCccccccccccchHHHhhcccCccc
Q 005419 91 ELYRVES---KPKKVPVLCNSTVSANSTQSQRAAINFCSKVWDECHNVSI 137 (697)
Q Consensus 91 ~l~~~~~---~~~~~p~lc~~~~~~~~~~~~~~~~~yc~~~~~~c~~~~~ 137 (697)
|+ ++++ +.+.|| ||. +||.++|.+|++..+
T Consensus 81 ~~-~~~~~~~~~~~~P-LC~---------------~~Cd~wf~aCk~d~t 113 (167)
T PF03024_consen 81 HW-QAEDRKTRIRGVP-LCA---------------SFCDDWFEACKDDYT 113 (167)
T ss_dssp --------------------------------------------------
T ss_pred cc-ccCCcCCccCCCC-cCH---------------HHHHHHHHHhhhHHh
Confidence 99 5553 588999 999 999999999999853
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.36 E-value=0.00045 Score=70.80 Aligned_cols=237 Identities=20% Similarity=0.306 Sum_probs=134.2
Q ss_pred eEEECC-CCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 214 NMVPHP-DGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 214 ~m~~~p-DGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
+.++.+ +| +||+++. .|+|+.++ ++.+. . ++. ...+..|++++. .+|++||...
T Consensus 4 gp~~d~~~g--~l~~~D~~~~~i~~~~-~~~~~--~--------------~~~--~~~~~~G~~~~~---~~g~l~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDG--RLYWVDIPGGRIYRVD-PDTGE--V--------------EVI--DLPGPNGMAFDR---PDGRLYVADS 59 (246)
T ss_dssp EEEEETTTT--EEEEEETTTTEEEEEE-TTTTE--E--------------EEE--ESSSEEEEEEEC---TTSEEEEEET
T ss_pred ceEEECCCC--EEEEEEcCCCEEEEEE-CCCCe--E--------------EEE--ecCCCceEEEEc---cCCEEEEEEc
Confidence 456777 55 7999995 78999986 33221 1 111 122389999993 2599999753
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeeccCC-CCcc
Q 005419 292 CDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHF-TSHH 370 (697)
Q Consensus 292 ~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~~P~-~~H~ 370 (697)
.. .++ +... + .+++.+.+..... ..+.
T Consensus 60 ~~------------------------------------~~~--~d~~-~-------------g~~~~~~~~~~~~~~~~~ 87 (246)
T PF08450_consen 60 GG------------------------------------IAV--VDPD-T-------------GKVTVLADLPDGGVPFNR 87 (246)
T ss_dssp TC------------------------------------EEE--EETT-T-------------TEEEEEEEEETTCSCTEE
T ss_pred Cc------------------------------------eEE--EecC-C-------------CcEEEEeeccCCCcccCC
Confidence 10 122 2211 1 2445555431111 2334
Q ss_pred ceeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCe
Q 005419 371 GGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPE 450 (697)
Q Consensus 371 GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 450 (697)
-..++++| ||.||++.=...... .. .. |+|+|+++++ ..+
T Consensus 88 ~ND~~vd~-~G~ly~t~~~~~~~~-----~~--~~--g~v~~~~~~~------------------------------~~~ 127 (246)
T PF08450_consen 88 PNDVAVDP-DGNLYVTDSGGGGAS-----GI--DP--GSVYRIDPDG------------------------------KVT 127 (246)
T ss_dssp EEEEEE-T-TS-EEEEEECCBCTT-----CG--GS--EEEEEEETTS------------------------------EEE
T ss_pred CceEEEcC-CCCEEEEecCCCccc-----cc--cc--cceEEECCCC------------------------------eEE
Confidence 45799999 999999865432210 11 11 9999999986 125
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEcCCCCceeeEEeccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccceeeec
Q 005419 451 IWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVTKGGNYGWRVYEGPFRYNPPSSPGGNTSASSINPIFPVMGYN 530 (697)
Q Consensus 451 I~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p~g~~~~~~~~~~~Pi~~y~ 530 (697)
+.+-++.-|.+++|++.. ..||++|-.....-.+++-..+.-.+ ....++...
T Consensus 128 ~~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~--------------------------~~~~~~~~~ 180 (246)
T PF08450_consen 128 VVADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELS--------------------------NRRVFIDFP 180 (246)
T ss_dssp EEEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEE--------------------------EEEEEEE-S
T ss_pred EEecCcccccceEECCcc-hheeecccccceeEEEecccccccee--------------------------eeeeEEEcC
Confidence 678899999999999985 47999998776533333322221111 011222222
Q ss_pred CCccCCCCCCcccceeEeecCCCCcccCCcEEEEEcccCeeEEeecCCCCCCCeeEEEEeeccCCCCCcccccccccccC
Q 005419 531 HSEVNKAEGSASITGGYFYRSQTDPCMYGRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCDRDSPIQCDTVKGSSFP 610 (697)
Q Consensus 531 H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~ylfgD~~~G~lw~~~~~p~~~G~~~~~~i~f~~~~~~p~~c~~~~g~~~~ 610 (697)
. +...+-|+.+- -.|+++++++..++|+.+. |+ |... ..|.+ +
T Consensus 181 ~-------~~g~pDG~~vD-------~~G~l~va~~~~~~I~~~~--p~--G~~~-~~i~~--------p---------- 223 (246)
T PF08450_consen 181 G-------GPGYPDGLAVD-------SDGNLWVADWGGGRIVVFD--PD--GKLL-REIEL--------P---------- 223 (246)
T ss_dssp S-------SSCEEEEEEEB-------TTS-EEEEEETTTEEEEEE--TT--SCEE-EEEE---------S----------
T ss_pred C-------CCcCCCcceEc-------CCCCEEEEEcCCCEEEEEC--CC--ccEE-EEEcC--------C----------
Confidence 1 11134455542 2578999999999998886 33 5532 23321 1
Q ss_pred CCCceeeEEEc-CC-CcEEEEec
Q 005419 611 SLGFITSFGQD-NR-KDIYLLAS 631 (697)
Q Consensus 611 ~~grI~sf~ed-~d-GeLYvlts 631 (697)
..++.+++.+ ++ +.|||.+.
T Consensus 224 -~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 -VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -SSSEEEEEEESTTSSEEEEEEB
T ss_pred -CCCEEEEEEECCCCCEEEEEeC
Confidence 1256677773 44 67888764
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.90 E-value=0.0075 Score=75.15 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=40.9
Q ss_pred CcEEEEEcccCeeEEeecCCCCCCCeeEEEEeeccCCCCCcccccccccc-cCCCCceeeEEEcCCCcEEEEecC-eEEE
Q 005419 559 GRYLYTDLYGAAVWAGTENPENSGNFSTTKLSVSCDRDSPIQCDTVKGSS-FPSLGFITSFGQDNRKDIYLLASN-GVYR 636 (697)
Q Consensus 559 G~ylfgD~~~G~lw~~~~~p~~~G~~~~~~i~f~~~~~~p~~c~~~~g~~-~~~~grI~sf~ed~dGeLYvlts~-gIYR 636 (697)
|..+++|..+++|..+.. + .| . ...+. -.+.. .+..|.. ...+.++.+++.+++|.|||++++ ...|
T Consensus 815 G~LYVADs~N~rIrviD~--~-tg-~-v~tia--G~G~~----G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDP--A-TK-R-VTTLA--GTGKA----GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CcEEEEECCCCEEEEEEC--C-CC-e-EEEEe--ccCCc----CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 578899999999877652 2 22 2 22221 00110 0111211 123468999999999999999874 4555
Q ss_pred EecC
Q 005419 637 VVRP 640 (697)
Q Consensus 637 Iv~p 640 (697)
+++.
T Consensus 884 vid~ 887 (1057)
T PLN02919 884 YLDL 887 (1057)
T ss_pred EEEC
Confidence 5553
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.67 E-value=0.0025 Score=65.38 Aligned_cols=147 Identities=20% Similarity=0.289 Sum_probs=89.8
Q ss_pred eeEEECCCCCceEEEEecC---------ceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcC
Q 005419 213 LNMVPHPDGSNRVFLSNQD---------GKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQN 283 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~---------G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~N 283 (697)
=.+++.||| ++|+++.. |+||.+. ++ +. + .+...+....-||||+|+ .
T Consensus 89 ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~-~~-~~---~-------------~~~~~~~~~pNGi~~s~d---g 145 (246)
T PF08450_consen 89 NDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRID-PD-GK---V-------------TVVADGLGFPNGIAFSPD---G 145 (246)
T ss_dssp EEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEE-TT-SE---E-------------EEEEEEESSEEEEEEETT---S
T ss_pred ceEEEcCCC--CEEEEecCCCccccccccceEEEC-CC-Ce---E-------------EEEecCcccccceEECCc---c
Confidence 468899998 69999852 7788875 32 21 1 112233455679999984 4
Q ss_pred CeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeec
Q 005419 284 GRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMG 363 (697)
Q Consensus 284 G~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~ 363 (697)
..+||..+. ..+|.+|..+.. .....+.+++.+
T Consensus 146 ~~lyv~ds~------------------------------------~~~i~~~~~~~~---------~~~~~~~~~~~~-- 178 (246)
T PF08450_consen 146 KTLYVADSF------------------------------------NGRIWRFDLDAD---------GGELSNRRVFID-- 178 (246)
T ss_dssp SEEEEEETT------------------------------------TTEEEEEEEETT---------TCCEEEEEEEEE--
T ss_pred hheeecccc------------------------------------cceeEEEecccc---------ccceeeeeeEEE--
Confidence 468886542 137888988643 011223344432
Q ss_pred cCCCCccceeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCC
Q 005419 364 LHFTSHHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSE 443 (697)
Q Consensus 364 ~P~~~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~ 443 (697)
.+...-..-.|.++. ||.||++.-. .|+|.|++++|.
T Consensus 179 ~~~~~g~pDG~~vD~-~G~l~va~~~-----------------~~~I~~~~p~G~------------------------- 215 (246)
T PF08450_consen 179 FPGGPGYPDGLAVDS-DGNLWVADWG-----------------GGRIVVFDPDGK------------------------- 215 (246)
T ss_dssp -SSSSCEEEEEEEBT-TS-EEEEEET-----------------TTEEEEEETTSC-------------------------
T ss_pred cCCCCcCCCcceEcC-CCCEEEEEcC-----------------CCEEEEECCCcc-------------------------
Confidence 332221123699999 9999998642 357999999883
Q ss_pred CCCCCCeEEEeccccceeeeecCCCCCeEEEEE
Q 005419 444 DKQLQPEIWALGFRNPWRCSFDAERPSYFLCAD 476 (697)
Q Consensus 444 ~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~~~D 476 (697)
.-+++..+..+|-.|+|--.+..+||++-
T Consensus 216 ----~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ----LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ----EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 23567778788999999422234799863
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.30 E-value=0.012 Score=63.89 Aligned_cols=168 Identities=20% Similarity=0.341 Sum_probs=94.0
Q ss_pred eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 213 LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
-.+.+.|||. ++||++. ..+|+++.+.+ ..+ .|. ....+......|.-.|+|||+ ..++||...
T Consensus 147 H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~-~~~-~l~---------~~~~~~~~~G~GPRh~~f~pd---g~~~Yv~~e 211 (345)
T PF10282_consen 147 HQVVFSPDGR-FVYVPDLGADRVYVYDIDD-DTG-KLT---------PVDSIKVPPGSGPRHLAFSPD---GKYAYVVNE 211 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEE-T-TS--TEE---------EEEEEECSTTSSEEEEEE-TT---SSEEEEEET
T ss_pred eeEEECCCCC-EEEEEecCCCEEEEEEEeC-CCc-eEE---------EeeccccccCCCCcEEEEcCC---cCEEEEecC
Confidence 4688999995 7999997 57899987632 221 121 112333455678999999994 457888653
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeeccCCCC-cc
Q 005419 292 CDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTS-HH 370 (697)
Q Consensus 292 ~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~~P~~~-H~ 370 (697)
. ...|..|+++.. .........+-+....... -.
T Consensus 212 ~------------------------------------s~~v~v~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 212 L------------------------------------SNTVSVFDYDPS---------DGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp T------------------------------------TTEEEEEEEETT---------TTEEEEEEEEESCETTSCSSSS
T ss_pred C------------------------------------CCcEEEEeeccc---------CCceeEEEEeeeccccccccCC
Confidence 1 135556666422 1122233333222111111 25
Q ss_pred ceeeEeCCCCC-eEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCC
Q 005419 371 GGQILFGPEDG-HLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQP 449 (697)
Q Consensus 371 GG~L~FGP~DG-~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~p 449 (697)
...|.+.| || +||++..... ++ .|++||.++. .+ ..-
T Consensus 247 ~~~i~isp-dg~~lyvsnr~~~-------------sI--~vf~~d~~~g----~l----------------------~~~ 284 (345)
T PF10282_consen 247 PAEIAISP-DGRFLYVSNRGSN-------------SI--SVFDLDPATG----TL----------------------TLV 284 (345)
T ss_dssp EEEEEE-T-TSSEEEEEECTTT-------------EE--EEEEECTTTT----TE----------------------EEE
T ss_pred ceeEEEec-CCCEEEEEeccCC-------------EE--EEEEEecCCC----ce----------------------EEE
Confidence 67899999 88 7999875411 01 1455543320 00 012
Q ss_pred eEEEeccccceeeeecCCCCCeEEEEEcCCCCce
Q 005419 450 EIWALGFRNPWRCSFDAERPSYFLCADVGQDEYE 483 (697)
Q Consensus 450 EI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~E 483 (697)
+.+..|-+.|..|++||.. ..||++..+.+...
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVS 317 (345)
T ss_dssp EEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEE
T ss_pred EEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEE
Confidence 3455567789999999974 58999988776533
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.03 E-value=0.85 Score=57.33 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=23.3
Q ss_pred EeccccceeeeecCCCCCeEEEEEcCCCCceeeE
Q 005419 453 ALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVD 486 (697)
Q Consensus 453 A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn 486 (697)
.-.+..|.++++|+. | +||++|.+.+..--++
T Consensus 855 ~a~l~~P~GIavd~d-G-~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 855 KAQLSEPAGLALGEN-G-RLFVADTNNSLIRYLD 886 (1057)
T ss_pred ccccCCceEEEEeCC-C-CEEEEECCCCEEEEEE
Confidence 445678999999996 4 5999998776433333
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.84 E-value=7.5 Score=41.49 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=38.0
Q ss_pred eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSF 290 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 290 (697)
..++++|||. ++||++. .+.|+++++...+ .+. . ... ..+......|.-+++|||+ ..++||..
T Consensus 129 ~~~~~~p~g~-~l~v~~~~~~~v~v~d~~~~g---~l~---~--~~~--~~~~~~~g~~p~~~~~~pd---g~~lyv~~ 193 (330)
T PRK11028 129 HSANIDPDNR-TLWVPCLKEDRIRLFTLSDDG---HLV---A--QEP--AEVTTVEGAGPRHMVFHPN---QQYAYCVN 193 (330)
T ss_pred cEeEeCCCCC-EEEEeeCCCCEEEEEEECCCC---ccc---c--cCC--CceecCCCCCCceEEECCC---CCEEEEEe
Confidence 5677899985 7888886 5999999863322 121 0 000 0111112346778999984 45688863
No 12
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.61 E-value=3.2 Score=45.67 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=94.1
Q ss_pred EEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCe-EEEEEee
Q 005419 215 MVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGR-FFVSFNC 292 (697)
Q Consensus 215 m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~-~YvsYs~ 292 (697)
..+.|||. .+++.+. .-+|.++++. +|. |. -..+.....-.|.-=|+||| ||+ .|+.--
T Consensus 150 a~~tP~~~-~l~v~DLG~Dri~~y~~~-dg~---L~---------~~~~~~v~~G~GPRHi~FHp----n~k~aY~v~E- 210 (346)
T COG2706 150 ANFTPDGR-YLVVPDLGTDRIFLYDLD-DGK---LT---------PADPAEVKPGAGPRHIVFHP----NGKYAYLVNE- 210 (346)
T ss_pred eeeCCCCC-EEEEeecCCceEEEEEcc-cCc---cc---------cccccccCCCCCcceEEEcC----CCcEEEEEec-
Confidence 45679983 6777775 5789998874 342 21 11122234557888999999 565 455421
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeeccCCC-Cccc
Q 005419 293 DKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFT-SHHG 371 (697)
Q Consensus 293 ~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~~P~~-~H~G 371 (697)
- ...|.-|..+.. .++..+.++|.++..-+. .-.+
T Consensus 211 L-----------------------------------~stV~v~~y~~~---------~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 211 L-----------------------------------NSTVDVLEYNPA---------VGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred c-----------------------------------CCEEEEEEEcCC---------CceEEEeeeeccCccccCCCCce
Confidence 0 124444555432 234556666665332233 3456
Q ss_pred eeeEeCCCCC-eEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCe
Q 005419 372 GQILFGPEDG-HLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPE 450 (697)
Q Consensus 372 G~L~FGP~DG-~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 450 (697)
..|...+ || +||++- ...| ++ .+.+||+++. .. ..-+
T Consensus 247 aaIhis~-dGrFLYasN-----------Rg~d--sI--~~f~V~~~~g----~L----------------------~~~~ 284 (346)
T COG2706 247 AAIHISP-DGRFLYASN-----------RGHD--SI--AVFSVDPDGG----KL----------------------ELVG 284 (346)
T ss_pred eEEEECC-CCCEEEEec-----------CCCC--eE--EEEEEcCCCC----EE----------------------EEEE
Confidence 6899999 88 799863 2222 22 3788888762 00 0236
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEcC
Q 005419 451 IWALGFRNPWRCSFDAERPSYFLCADVG 478 (697)
Q Consensus 451 I~A~GlRNP~r~sfDp~~g~~L~~~DvG 478 (697)
+|..+-+-|-.|.|++.. ..|+++..-
T Consensus 285 ~~~teg~~PR~F~i~~~g-~~Liaa~q~ 311 (346)
T COG2706 285 ITPTEGQFPRDFNINPSG-RFLIAANQK 311 (346)
T ss_pred EeccCCcCCccceeCCCC-CEEEEEccC
Confidence 778888889999999975 456665433
No 13
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.54 E-value=1.6 Score=54.52 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCcccccccccccCCCCceeeEEEcC-CCcEEEEecCeEEEEecCCCC
Q 005419 597 SPIQCDTVKGSSFPSLGFITSFGQDN-RKDIYLLASNGVYRVVRPSRC 643 (697)
Q Consensus 597 ~p~~c~~~~g~~~~~~grI~sf~ed~-dGeLYvlts~gIYRIv~ps~c 643 (697)
.|++|+.......-.+--+.+++++| |+.|||++++-||||..--+-
T Consensus 517 ~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV 564 (1899)
T KOG4659|consen 517 PPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRV 564 (1899)
T ss_pred CccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccE
Confidence 36778653322212345788999998 889999999999999865543
No 14
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.90 E-value=3.5 Score=44.88 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=49.5
Q ss_pred eeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCeE
Q 005419 372 GQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEI 451 (697)
Q Consensus 372 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 451 (697)
-.+..+| ||.+|+++-.. .+ .........|+|+|+++++. .-++
T Consensus 114 ND~~v~p-dG~~wfgt~~~---~~---~~~~~~~~~G~lyr~~p~g~-----------------------------~~~l 157 (307)
T COG3386 114 NDGVVDP-DGRIWFGDMGY---FD---LGKSEERPTGSLYRVDPDGG-----------------------------VVRL 157 (307)
T ss_pred CceeEcC-CCCEEEeCCCc---cc---cCccccCCcceEEEEcCCCC-----------------------------EEEe
Confidence 3567789 99999987653 01 11223467889999998762 1123
Q ss_pred EEeccccceeeeecCCCCCeEEEEEcCCCC
Q 005419 452 WALGFRNPWRCSFDAERPSYFLCADVGQDE 481 (697)
Q Consensus 452 ~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~ 481 (697)
+.-.+.-|-+++|+|.. ..||.+|-....
T Consensus 158 ~~~~~~~~NGla~SpDg-~tly~aDT~~~~ 186 (307)
T COG3386 158 LDDDLTIPNGLAFSPDG-KTLYVADTPANR 186 (307)
T ss_pred ecCcEEecCceEECCCC-CEEEEEeCCCCe
Confidence 33336677799999985 479999987653
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.58 E-value=1.4 Score=48.59 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=45.2
Q ss_pred EEEEEecCce--eeEEECCCCCceEEEEecCceEEEEecCCCCCCCccccc-CCCCccCcccceeeccCCceeeeEeCCC
Q 005419 203 CLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELD-ESNPFLDLTDQVHADVELGMMGIAFHPN 279 (697)
Q Consensus 203 ~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~-~~~pflDl~~~V~~~~e~GLLGiAfhPd 279 (697)
..+++++++. ..|++.+|| |||+++. +||.+.. .++.++. + +.+.+++--..-....+.++.++++.|
T Consensus 63 ~~~vfa~~l~~p~Gi~~~~~G---lyV~~~~-~i~~~~d-~~gdg~a---d~~~~~l~~~~~~~~~~~~~~~~~l~~gp- 133 (367)
T TIGR02604 63 KSNVFAEELSMVTGLAVAVGG---VYVATPP-DILFLRD-KDGDDKA---DGEREVLLSGFGGQINNHHHSLNSLAWGP- 133 (367)
T ss_pred eeEEeecCCCCccceeEecCC---EEEeCCC-eEEEEeC-CCCCCCC---CCccEEEEEccCCCCCcccccccCceECC-
Confidence 4578888887 889999987 9999854 5776542 2333321 1 111122110000001245677889887
Q ss_pred CCcCCeEEEEEe
Q 005419 280 FQQNGRFFVSFN 291 (697)
Q Consensus 280 F~~NG~~YvsYs 291 (697)
+|+||++..
T Consensus 134 ---DG~LYv~~G 142 (367)
T TIGR02604 134 ---DGWLYFNHG 142 (367)
T ss_pred ---CCCEEEecc
Confidence 799999765
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.17 E-value=21 Score=38.14 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=37.8
Q ss_pred eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSF 290 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 290 (697)
..|++.|||. ++|++.. .|.|.++++.++|. .. + .+. ...+..+..+++|+|+ ..++||.-
T Consensus 83 ~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~--~~-----~-~~~-----~~~~~~~~~~~~~~p~---g~~l~v~~ 144 (330)
T PRK11028 83 THISTDHQGR-FLFSASYNANCVSVSPLDKDGI--PV-----A-PIQ-----IIEGLEGCHSANIDPD---NRTLWVPC 144 (330)
T ss_pred eEEEECCCCC-EEEEEEcCCCeEEEEEECCCCC--CC-----C-cee-----eccCCCcccEeEeCCC---CCEEEEee
Confidence 5789999995 7888875 78888876533221 11 0 001 0123356788999983 45777753
No 17
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.60 E-value=4.2 Score=44.28 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred cCce-eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeE
Q 005419 209 TGAY-LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRF 286 (697)
Q Consensus 209 ~Gl~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~ 286 (697)
.|.. ..|+++|||. ++||+.+ .+.|.++++.. ..+ .++.... +...+. ...++..--+|+++|| ..++
T Consensus 190 ~G~GPRh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~-~~g-~~~~~~~---~~~~~~-~~~~~~~~~~i~ispd---g~~l 259 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGK-YAYVVNELSNTVSVFDYDP-SDG-SLTEIQT---ISTLPE-GFTGENAPAEIAISPD---GRFL 259 (345)
T ss_dssp TTSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEET-TTT-EEEEEEE---EESCET-TSCSSSSEEEEEE-TT---SSEE
T ss_pred cCCCCcEEEEcCCcC-EEEEecCCCCcEEEEeecc-cCC-ceeEEEE---eeeccc-cccccCCceeEEEecC---CCEE
Confidence 3444 8899999996 7888865 78898887652 122 2211000 111011 1223346788999995 2367
Q ss_pred EEEE
Q 005419 287 FVSF 290 (697)
Q Consensus 287 YvsY 290 (697)
||+-
T Consensus 260 yvsn 263 (345)
T PF10282_consen 260 YVSN 263 (345)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.55 E-value=17 Score=36.85 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.0
Q ss_pred eeEEECCCCCceEEEEe-cCceEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSN-QDGKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~ 239 (697)
..+++.|||. ++|++. ..|.|+++++
T Consensus 160 ~~~~~s~dg~-~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 160 RFAEFTADGK-ELWVSSEIGGTVSVIDV 186 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCEEEEEEc
Confidence 5688999985 576664 5899999875
No 19
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.85 E-value=12 Score=40.38 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccCCCCcccee-eEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCC
Q 005419 363 GLHFTSHHGGQ-ILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPY 441 (697)
Q Consensus 363 ~~P~~~H~GG~-L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF 441 (697)
.+|...|+|.+ |--+| -|.+++++= -.|.++|+|+... .|-.|..|..||-
T Consensus 226 p~P~~~~~gsRriwsdp-ig~~wittw-----------------g~g~l~rfdPs~~----------sW~eypLPgs~ar 277 (353)
T COG4257 226 PQPNALKAGSRRIWSDP-IGRAWITTW-----------------GTGSLHRFDPSVT----------SWIEYPLPGSKAR 277 (353)
T ss_pred cCCCcccccccccccCc-cCcEEEecc-----------------CCceeeEeCcccc----------cceeeeCCCCCCC
Confidence 45666688874 77778 899999841 2355899988652 3889999988874
No 20
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.17 E-value=9.1 Score=40.48 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=37.5
Q ss_pred CcEEEEEe-cCce--eeEEECCCCCceEEEEe-cCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEe
Q 005419 201 GLCLEKVG-TGAY--LNMVPHPDGSNRVFLSN-QDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAF 276 (697)
Q Consensus 201 G~~le~va-~Gl~--~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAf 276 (697)
|=.++++. .|.. =+++...+| ++.|++ +.+.+++++++.++. .++... ...+++ .+...+..|+=|+|+
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~--~~~~~~-~~~~~l--~~~~~~N~G~EGla~ 125 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTT--SLDRAD-VQKISL--GFPNKGNKGFEGLAY 125 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----T--T--EEE-EEEEE-----S---SS--EEEEE
T ss_pred CCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEecccc--ccchhh-ceEEec--ccccCCCcceEEEEE
Confidence 33345543 3333 467777777 555554 789999988754321 221110 011111 111246789999999
Q ss_pred CCCCCcCCeEEEE
Q 005419 277 HPNFQQNGRFFVS 289 (697)
Q Consensus 277 hPdF~~NG~~Yvs 289 (697)
+| .+++|||.
T Consensus 126 D~---~~~~L~v~ 135 (248)
T PF06977_consen 126 DP---KTNRLFVA 135 (248)
T ss_dssp ET---TTTEEEEE
T ss_pred cC---CCCEEEEE
Confidence 97 67889886
No 21
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.95 E-value=12 Score=40.48 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=24.5
Q ss_pred cEEEEEecCce-eeEEECCCCCceEEEEecC-ceEEEEecCCCC
Q 005419 202 LCLEKVGTGAY-LNMVPHPDGSNRVFLSNQD-GKTWLATVPEPG 243 (697)
Q Consensus 202 ~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~-G~V~~~~~p~~g 243 (697)
+..=.+-+|.. ..++++|||+ +|.+.|. |.|=.++ |..|
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~--VWft~qg~gaiGhLd-P~tG 93 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGA--VWFTAQGTGAIGHLD-PATG 93 (353)
T ss_pred cceeccCCCCCccccccCCCCc--eEEecCccccceecC-CCCC
Confidence 33334445665 7888999996 8888874 5554443 5433
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.57 E-value=12 Score=40.80 Aligned_cols=145 Identities=17% Similarity=0.294 Sum_probs=83.3
Q ss_pred CCCcEEEEEecCce--eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCce-eee
Q 005419 199 PSGLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGM-MGI 274 (697)
Q Consensus 199 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GL-LGi 274 (697)
|.|-.++.+...+. =+|+|+|||+ .+|++|- .++||.+.++. . ...++.... .+....+.|+ =|+
T Consensus 150 p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~-~---~g~~~~~~~------~~~~~~~~G~PDG~ 218 (307)
T COG3386 150 PDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDP-A---TGPIGGRRG------FVDFDEEPGLPDGM 218 (307)
T ss_pred CCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCc-c---cCccCCcce------EEEccCCCCCCCce
Confidence 33433333333365 4699999997 7999996 58999987642 1 111222222 2333334554 589
Q ss_pred EeCCCCCcCCeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCC
Q 005419 275 AFHPNFQQNGRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPL 354 (697)
Q Consensus 275 AfhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~ 354 (697)
+.| .+|.+|+...- +| .+|.+|.-++.
T Consensus 219 ~vD----adG~lw~~a~~----------------------------~g-------~~v~~~~pdG~-------------- 245 (307)
T COG3386 219 AVD----ADGNLWVAAVW----------------------------GG-------GRVVRFNPDGK-------------- 245 (307)
T ss_pred EEe----CCCCEEEeccc----------------------------CC-------ceEEEECCCCc--------------
Confidence 998 68999973321 11 26777865432
Q ss_pred ceEEEEeeccCCCCccceeeEeCCCC-CeEEEEecCCCCCCCCccccccccCCCceEEEEecCC
Q 005419 355 EVRRILTMGLHFTSHHGGQILFGPED-GHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDK 417 (697)
Q Consensus 355 ~~r~Il~~~~P~~~H~GG~L~FGP~D-G~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 417 (697)
.|-++.+|.. .--.+.||-.| ..|||++-..+.. . ... ...+.|+++++....
T Consensus 246 ---l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs~~~~~~--~-~~~--~~~~~G~lf~~~~~~ 299 (307)
T COG3386 246 ---LLGEIKLPVK--RPTNPAFGGPDLNTLYITSARSGMS--R-MLT--ADPLGGGLFSLRLEV 299 (307)
T ss_pred ---EEEEEECCCC--CCccceEeCCCcCEEEEEecCCCCC--c-ccc--ccccCceEEEEeccc
Confidence 2223345531 12236665313 5899998776542 1 112 466889999988765
No 23
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=88.41 E-value=8.7 Score=44.01 Aligned_cols=66 Identities=20% Similarity=0.418 Sum_probs=45.0
Q ss_pred cEEEEEecCce--eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCce-eeeEeCC
Q 005419 202 LCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGM-MGIAFHP 278 (697)
Q Consensus 202 ~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GL-LGiAfhP 278 (697)
-.++++..++. -+|...|||. .+.|+.-.++||++++ ++|..+ +.-..|-|| ++++.||
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vidi-dngnv~----------------~idkS~~~lItdf~~~~ 453 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDI-DNGNVR----------------LIDKSEYGLITDFDWHP 453 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEe-cCCCee----------------EecccccceeEEEEEcC
Confidence 34456666665 6788999994 5888888999999987 344311 112345565 7999998
Q ss_pred CCCcCCeEEEE
Q 005419 279 NFQQNGRFFVS 289 (697)
Q Consensus 279 dF~~NG~~Yvs 289 (697)
|+++..|
T Consensus 454 ----nsr~iAY 460 (668)
T COG4946 454 ----NSRWIAY 460 (668)
T ss_pred ----CceeEEE
Confidence 6766543
No 24
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.85 E-value=6.2 Score=43.03 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.5
Q ss_pred CcEEEEEecCce--eeEEECCC-CCceEEEEec
Q 005419 201 GLCLEKVGTGAY--LNMVPHPD-GSNRVFLSNQ 230 (697)
Q Consensus 201 G~~le~va~Gl~--~~m~~~pD-Gs~RlfV~Eq 230 (697)
+...|++|.|++ +.|+|.|. | +||++|.
T Consensus 170 ~~~~~i~A~GlRN~~~~~~d~~tg--~l~~~d~ 200 (331)
T PF07995_consen 170 GADSEIYAYGLRNPFGLAFDPNTG--RLWAADN 200 (331)
T ss_dssp TSTTTEEEE--SEEEEEEEETTTT--EEEEEEE
T ss_pred CceEEEEEeCCCccccEEEECCCC--cEEEEcc
Confidence 456689999999 99999998 5 7999995
No 25
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.58 E-value=19 Score=41.43 Aligned_cols=38 Identities=11% Similarity=0.344 Sum_probs=29.3
Q ss_pred CCCeEEEeccccceeeeecCCCCCeEEEEEcCCCCceeeEEec
Q 005419 447 LQPEIWALGFRNPWRCSFDAERPSYFLCADVGQDEYEEVDIVT 489 (697)
Q Consensus 447 ~~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~EEIn~I~ 489 (697)
...|++|-||.+||.|+|.|. + +||+++-+.. .|.+|.
T Consensus 20 f~~~~va~GL~~Pw~maflPD-G-~llVtER~~G---~I~~v~ 57 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPD-N-QLWVTERATG---KILRVN 57 (454)
T ss_pred cEEEEEECCCCCceEEEEcCC-C-eEEEEEecCC---EEEEEe
Confidence 456899999999999999996 4 6999987422 355554
No 26
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=76 Score=35.32 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=41.7
Q ss_pred EEEEEecCce-eeEEECCCCCceEEEEec---CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCC
Q 005419 203 CLEKVGTGAY-LNMVPHPDGSNRVFLSNQ---DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHP 278 (697)
Q Consensus 203 ~le~va~Gl~-~~m~~~pDGs~RlfV~Eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhP 278 (697)
+++.+.-|.. ..+++.|||. .+||+.- .+.|++++ ++ +++.++ .+ ..++.. .++|++|
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid-~~--t~~~~~------------~~-~vG~~P-~~~a~~p 169 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVID-AA--TNKVTA------------TI-PVGNTP-TGVAVDP 169 (381)
T ss_pred eeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEe-CC--CCeEEE------------EE-ecCCCc-ceEEECC
Confidence 3444555545 7889999995 7999997 57888875 22 222211 11 122222 9999998
Q ss_pred CCCcCCeEEEEE
Q 005419 279 NFQQNGRFFVSF 290 (697)
Q Consensus 279 dF~~NG~~YvsY 290 (697)
+ -.++||..
T Consensus 170 ~---g~~vyv~~ 178 (381)
T COG3391 170 D---GNKVYVTN 178 (381)
T ss_pred C---CCeEEEEe
Confidence 3 34599876
No 27
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=83.38 E-value=5.8 Score=41.92 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=31.6
Q ss_pred eeEEECCCCCceEEEEecC--ceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQD--GKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSF 290 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~--G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 290 (697)
=++++.|.+ +|+||+... ..|+.+..-. ....+.+.....+.+ .. ..-+-+-++++|| .+|.+||.-
T Consensus 121 EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~d~S~l~~~p---~t~~lliLS 189 (248)
T PF06977_consen 121 EGLAYDPKT-NRLFVAKERKPKRLYEVNGFP--GGFDLFVSDDQDLDD--DK---LFVRDLSGLSYDP---RTGHLLILS 189 (248)
T ss_dssp EEEEEETTT-TEEEEEEESSSEEEEEEESTT---SS--EEEE-HHHH---HT-----SS---EEEEET---TTTEEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCChhhEEEcccc--Cccceeecccccccc--cc---ceeccccceEEcC---CCCeEEEEE
Confidence 467888865 489998754 4555543200 111111100001110 00 1123367899998 589999973
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=82.52 E-value=74 Score=35.51 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCccce--eeEeCCCCCeEEEEe-cCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCC
Q 005419 367 TSHHGG--QILFGPEDGHLYFMV-GDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSE 443 (697)
Q Consensus 367 ~~H~GG--~L~FGP~DG~LYis~-GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~ 443 (697)
.++-|| .+.+.|..+.|||.+ |.+ .+ ..+.....|..||....
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~--~~-------thk~~~~~V~ViD~~t~------------------------- 289 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRA--KW-------THKTASRFLFVVDAKTG------------------------- 289 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCc--cc-------cccCCCCEEEEEECCCC-------------------------
Confidence 456666 499999346899944 321 00 01223446888887551
Q ss_pred CCCCCCeEEEeccccceeeeecCCCCCeEEEEEcCCC
Q 005419 444 DKQLQPEIWALGFRNPWRCSFDAERPSYFLCADVGQD 480 (697)
Q Consensus 444 ~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d 480 (697)
..-..+..| +.||+++|.+...-+||+++-+.+
T Consensus 290 ---kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 290 ---KRLRKIELG-HEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred ---eEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCC
Confidence 011233456 478999999974216787765444
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=80.24 E-value=19 Score=40.01 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=15.5
Q ss_pred CccceeeEeCCCCC--eEEEEecC
Q 005419 368 SHHGGQILFGPEDG--HLYFMVGD 389 (697)
Q Consensus 368 ~H~GG~L~FGP~DG--~LYis~GD 389 (697)
.|...+|.|.| || .||++.+.
T Consensus 298 G~~~~~iavS~-Dgkp~lyvtn~~ 320 (352)
T TIGR02658 298 GHEIDSINVSQ-DAKPLLYALSTG 320 (352)
T ss_pred CCceeeEEECC-CCCeEEEEeCCC
Confidence 35566799999 76 47777765
No 30
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.01 E-value=3.7 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.4
Q ss_pred CceeeEEEcCCCcEEEEecC--eEEE
Q 005419 613 GFITSFGQDNRKDIYLLASN--GVYR 636 (697)
Q Consensus 613 grI~sf~ed~dGeLYvlts~--gIYR 636 (697)
.+|.+++.+++|+|||++++ .|.+
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 36789999999999999975 3544
No 31
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=78.61 E-value=2.9 Score=29.18 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.0
Q ss_pred cccceeeeecCCCCCeEEEEEcCCC
Q 005419 456 FRNPWRCSFDAERPSYFLCADVGQD 480 (697)
Q Consensus 456 lRNP~r~sfDp~~g~~L~~~DvG~d 480 (697)
|++|+++++|+. | .||++|.+..
T Consensus 1 f~~P~gvav~~~-g-~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSD-G-NIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETT-S-EEEEEECCCT
T ss_pred CcCCcEEEEeCC-C-CEEEEECCCC
Confidence 689999999965 4 6999997754
No 32
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.54 E-value=82 Score=34.52 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=38.8
Q ss_pred eEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEE
Q 005419 214 NMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSF 290 (697)
Q Consensus 214 ~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 290 (697)
.+++..+|. =+.+-||...++++.+..++ ..+.++. .-+-| ........||=|+|-+| .+++|||.=
T Consensus 133 ~Ieyig~n~-fvi~dER~~~l~~~~vd~~t--~~~~~~~--~~i~L--~~~~k~N~GfEGlA~d~---~~~~l~~aK 199 (316)
T COG3204 133 TIEYIGGNQ-FVIVDERDRALYLFTVDADT--TVISAKV--QKIPL--GTTNKKNKGFEGLAWDP---VDHRLFVAK 199 (316)
T ss_pred HeEEecCCE-EEEEehhcceEEEEEEcCCc--cEEeccc--eEEec--cccCCCCcCceeeecCC---CCceEEEEE
Confidence 456666661 23344578999988774322 2222211 11111 12223478999999998 688999863
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=76.24 E-value=81 Score=33.88 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=21.9
Q ss_pred eEEECCCCCceEEEEecCceEEEEecCC
Q 005419 214 NMVPHPDGSNRVFLSNQDGKTWLATVPE 241 (697)
Q Consensus 214 ~m~~~pDGs~RlfV~Eq~G~V~~~~~p~ 241 (697)
.++.+|.-+ .|++.+|.|.||+.++-+
T Consensus 129 ~vvlhpnQt-eLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 129 TVVLHPNQT-ELISGDQSGNIRVWDLGE 155 (311)
T ss_pred eEEecCCcc-eEEeecCCCcEEEEEccC
Confidence 456788765 699999999999998744
No 34
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.52 E-value=1.7e+02 Score=33.23 Aligned_cols=42 Identities=2% Similarity=-0.095 Sum_probs=26.4
Q ss_pred CCCCcEEEEEec-CceeeEEECCCCCceEEEEec---CceEEEEec
Q 005419 198 PPSGLCLEKVGT-GAYLNMVPHPDGSNRVFLSNQ---DGKTWLATV 239 (697)
Q Consensus 198 ~p~G~~le~va~-Gl~~~m~~~pDGs~RlfV~Eq---~G~V~~~~~ 239 (697)
+..|.-.+.+.. +..+...|+|||...+|++.. ...||++++
T Consensus 175 d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl 220 (419)
T PRK04043 175 DYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNL 220 (419)
T ss_pred CCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEEC
Confidence 345655554543 333788999999633776543 356998875
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=73.16 E-value=29 Score=39.84 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=66.4
Q ss_pred cccCC---CccchhhhcCCCCCCCceeecCCcccC-----CCCCCCCC-CCCcEEEEEecCce-eeEEECCCCCceEEEE
Q 005419 159 TDLWP---SKSAFCNEFGGASGDGLVCFDGGPVSL-----NSSETPSP-PSGLCLEKVGTGAY-LNMVPHPDGSNRVFLS 228 (697)
Q Consensus 159 ~~~~~---~~~~fc~~~~~~~~d~~~cf~~~~~~~-----~~~~~~~~-p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~ 228 (697)
..||. +..---.+.+-...-.++||.....+| +..--..+ -.|-|+..+.+|-. .-+-++||+.|-+|+.
T Consensus 239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 45676 222222333333345667777655543 22111111 23889999988877 6788999996555555
Q ss_pred ecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEeec
Q 005419 229 NQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFNCD 293 (697)
Q Consensus 229 Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~ 293 (697)
-.+|+|+.+++ .+++.++ -+-...+..+.|.|-| +|+=||+-+.+
T Consensus 319 ~sd~ki~~wDi---Rs~kvvq-------------eYd~hLg~i~~i~F~~----~g~rFissSDd 363 (503)
T KOG0282|consen 319 GSDKKIRQWDI---RSGKVVQ-------------EYDRHLGAILDITFVD----EGRRFISSSDD 363 (503)
T ss_pred cCCCcEEEEec---cchHHHH-------------HHHhhhhheeeeEEcc----CCceEeeeccC
Confidence 57999999874 3333321 0112235678888875 67777766543
No 36
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=72.38 E-value=5.2 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.5
Q ss_pred CceeeEEEcCCCcEEEEecC
Q 005419 613 GFITSFGQDNRKDIYLLASN 632 (697)
Q Consensus 613 grI~sf~ed~dGeLYvlts~ 632 (697)
..|.++.||.+|.|||.+.+
T Consensus 5 n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SCEEEEEE-TTSCEEEEETS
T ss_pred CeEEEEEEcCCcCEEEEeCC
Confidence 46899999999999999853
No 37
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=72.28 E-value=12 Score=33.71 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=46.6
Q ss_pred eEeCCCCCeEEEEecCCCCCCCCcccccc--ccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCeE
Q 005419 374 ILFGPEDGHLYFMVGDGEGRGDPYNFSQN--KKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEI 451 (697)
Q Consensus 374 L~FGP~DG~LYis~GDgg~~~DP~~~aQn--~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 451 (697)
|.+.+.+|.+|++-...-.. ....... .....|.+||.|+.+. .-+|
T Consensus 3 ldv~~~~g~vYfTdsS~~~~--~~~~~~~~le~~~~GRll~ydp~t~-----------------------------~~~v 51 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYD--RRDWVYDLLEGRPTGRLLRYDPSTK-----------------------------ETTV 51 (89)
T ss_dssp EEE-TTT--EEEEES-SS----TTGHHHHHHHT---EEEEEEETTTT-----------------------------EEEE
T ss_pred eeEecCCCEEEEEeCccccC--ccceeeeeecCCCCcCEEEEECCCC-----------------------------eEEE
Confidence 56677239999998764321 1111111 2577899999999872 2479
Q ss_pred EEeccccceeeeecCCCCCeEEEEEcCCC
Q 005419 452 WALGFRNPWRCSFDAERPSYFLCADVGQD 480 (697)
Q Consensus 452 ~A~GlRNP~r~sfDp~~g~~L~~~DvG~d 480 (697)
-+-||+=|-|++..+.. +.++++|-+..
T Consensus 52 l~~~L~fpNGVals~d~-~~vlv~Et~~~ 79 (89)
T PF03088_consen 52 LLDGLYFPNGVALSPDE-SFVLVAETGRY 79 (89)
T ss_dssp EEEEESSEEEEEE-TTS-SEEEEEEGGGT
T ss_pred ehhCCCccCeEEEcCCC-CEEEEEeccCc
Confidence 99999999999999975 46889887764
No 38
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=71.43 E-value=6.5 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEcCCCCc
Q 005419 451 IWALGFRNPWRCSFDAERPSYFLCADVGQDEY 482 (697)
Q Consensus 451 I~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~~ 482 (697)
+..-++..|-+++||+..+ +||.+|.+....
T Consensus 3 ~~~~~~~~~~~la~d~~~~-~lYw~D~~~~~I 33 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEG-RLYWTDWGLDVI 33 (43)
T ss_pred EEECCCCCcCEEEEeecCC-EEEEEeCCCCEE
Confidence 4566889999999999976 799999988543
No 39
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=70.71 E-value=1.5e+02 Score=38.56 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=48.4
Q ss_pred eeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCeE
Q 005419 372 GQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEI 451 (697)
Q Consensus 372 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 451 (697)
..|+||+ ||-|||+=-|+-.- |.-+.. +-.|.|--+. |.++..++-. -+-++=|..+ .+
T Consensus 596 r~Iavg~-~G~lyvaEsD~rri----Nrvr~~-~tdg~i~ila--Ga~S~C~C~~--------~~~cdcfs~~-----~~ 654 (1899)
T KOG4659|consen 596 RDIAVGT-DGALYVAESDGRRI----NRVRKL-STDGTISILA--GAKSPCSCDV--------AACCDCFSLR-----DV 654 (1899)
T ss_pred hceeecC-CceEEEEeccchhh----hheEEe-ccCceEEEec--CCCCCCCccc--------ccCCcccccc-----ch
Confidence 3599999 99999999886542 222222 2233333221 1111111110 0124445433 33
Q ss_pred EEe--ccccceeeeecCCCCCeEEEEEcCCCC
Q 005419 452 WAL--GFRNPWRCSFDAERPSYFLCADVGQDE 481 (697)
Q Consensus 452 ~A~--GlRNP~r~sfDp~~g~~L~~~DvG~d~ 481 (697)
+|. =|-.|..+++-|.. .++++|.|.-.
T Consensus 655 ~At~A~lnsp~alaVsPdg--~v~IAD~gN~r 684 (1899)
T KOG4659|consen 655 AATQAKLNSPYALAVSPDG--DVIIADSGNSR 684 (1899)
T ss_pred hhhccccCCcceEEECCCC--cEEEecCCchh
Confidence 332 35678899999974 59999999753
No 40
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=68.56 E-value=24 Score=41.36 Aligned_cols=101 Identities=24% Similarity=0.376 Sum_probs=55.3
Q ss_pred eeEeCCCCCeEEEEecCCCCCC-CCcccccc--ccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCC
Q 005419 373 QILFGPEDGHLYFMVGDGEGRG-DPYNFSQN--KKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQP 449 (697)
Q Consensus 373 ~L~FGP~DG~LYis~GDgg~~~-DP~~~aQn--~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~p 449 (697)
.|.+.|.+|.+|+++=..+... ++ ..+.| .....|.|+|+++++..... +...|..+-+ ..+|.........
T Consensus 354 gi~~~p~~g~vY~a~T~~~~r~~~~-~~~~n~~~~n~~G~I~r~~~~~~d~~~---~~f~~~~~~~-~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 354 GITVNPDDGEVYFALTNNSGRGESD-VDAANPRAGNGYGQIYRYDPDGNDHAA---TTFTWELFLV-GGDPTDASGNGSN 428 (524)
T ss_pred CeeEeCCCCEEEEEEecCCCCcccc-cccCCcccCCcccEEEEecccCCcccc---ceeEEEEEEE-ecCcccccccccC
Confidence 4788887899999975554221 11 12233 36789999999988731111 1112211111 1222211111112
Q ss_pred eEEEeccccceeeeecCCCCCeEEEEEcCCC
Q 005419 450 EIWALGFRNPWRCSFDAERPSYFLCADVGQD 480 (697)
Q Consensus 450 EI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d 480 (697)
..=..+|.||=.++||+. | +||+.+=+..
T Consensus 429 ~~~~~~f~sPDNL~~d~~-G-~LwI~eD~~~ 457 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPD-G-NLWIQEDGGG 457 (524)
T ss_pred cccCCCcCCCCceEECCC-C-CEEEEeCCCC
Confidence 223567899999999996 4 4776654443
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.78 E-value=1.2e+02 Score=29.11 Aligned_cols=58 Identities=28% Similarity=0.408 Sum_probs=37.6
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
..|.+.|+|. +++++...|.|+++++.. ++.+. .....+.....++++|+ +.+++..+
T Consensus 181 ~~~~~~~~~~-~l~~~~~~~~i~i~d~~~---~~~~~-------------~~~~~~~~i~~~~~~~~----~~~~~~~~ 238 (289)
T cd00200 181 NSVAFSPDGE-KLLSSSSDGTIKLWDLST---GKCLG-------------TLRGHENGVNSVAFSPD----GYLLASGS 238 (289)
T ss_pred ceEEECCCcC-EEEEecCCCcEEEEECCC---Cceec-------------chhhcCCceEEEEEcCC----CcEEEEEc
Confidence 6889999984 688888899999987521 11110 00122346788999985 66666543
No 42
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=64.69 E-value=2.1e+02 Score=31.92 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred hhhcCCCCCCCceeecCCccc----CCCCCCCCCCCCcEEEEEecCce-eeEEECCCCCceEEEEecCceEEEEecCCC-
Q 005419 169 CNEFGGASGDGLVCFDGGPVS----LNSSETPSPPSGLCLEKVGTGAY-LNMVPHPDGSNRVFLSNQDGKTWLATVPEP- 242 (697)
Q Consensus 169 c~~~~~~~~d~~~cf~~~~~~----~~~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~- 242 (697)
|++....++..-+|-++...- +...+-.--|. ..-.+..|-- +.|+|||+|.==..|.|-++.|-++...+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~--~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA--DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc--cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 666665555557777765431 11111100000 0112244555 899999999533556778999877654221
Q ss_pred CCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCe-EEEE
Q 005419 243 GSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGR-FFVS 289 (697)
Q Consensus 243 gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~-~Yvs 289 (697)
|.-+.| ..++.-++ .+.++.+.-.|..+| +|+ +|++
T Consensus 225 g~~~~l------Q~i~tlP~-dF~g~~~~aaIhis~----dGrFLYas 261 (346)
T COG2706 225 GKFEEL------QTIDTLPE-DFTGTNWAAAIHISP----DGRFLYAS 261 (346)
T ss_pred ceEEEe------eeeccCcc-ccCCCCceeEEEECC----CCCEEEEe
Confidence 221122 12222121 256788899999997 565 5553
No 43
>PTZ00420 coronin; Provisional
Probab=64.38 E-value=1.5e+02 Score=35.27 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=35.3
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCC
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPN 279 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPd 279 (697)
+.++|+|+..+.|..+..+|.|++++++..+. .+. ....+. .+...-......++|||+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~--~~~-~i~~p~-----~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDE--SVK-EIKDPQ-----CILKGHKKKISIIDWNPM 136 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc--ccc-ccccce-----EEeecCCCcEEEEEECCC
Confidence 68899998545677777899999998764321 000 000111 111223456789999994
No 44
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=62.19 E-value=1.6e+02 Score=32.05 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=16.8
Q ss_pred ccce--eeEeCCCCCe-EEEEecCC
Q 005419 369 HHGG--QILFGPEDGH-LYFMVGDG 390 (697)
Q Consensus 369 H~GG--~L~FGP~DG~-LYis~GDg 390 (697)
.|.| .|++.| ||. ||+++=..
T Consensus 145 ~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 145 NNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred CCCCeEEEEECC-CCCEEEEEECcc
Confidence 4556 799999 998 99988654
No 45
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=62.06 E-value=9.9 Score=48.72 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCCCe-----eecc--C---CCCccCCchhhHHHHHHhHHhc---cCChhhHhhhhhccccc-cccCc
Q 005419 24 HPLCTNLRAPFTPKAPL-----AFCQ--Y---NGSVCCNSTEDQQLQNQFKAMN---VSDSGCASLLKSIRCSR-CDQFS 89 (697)
Q Consensus 24 ~p~c~d~~~p~~~~~~l-----~fC~--y---~~~~cc~~~~d~~~~~~~~~~~---~~~~~C~~~~~~ilc~~-c~p~~ 89 (697)
.--|.+..+|..|+... +.|+ + .+-.|||..+-..|+++++... ..=..|..-++.+.|+- |||.-
T Consensus 15 ~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N~~~~~C~~tCsP~Q 94 (1204)
T TIGR00917 15 VLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQ 94 (1204)
T ss_pred CCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHHHHHHhcCCCcCcCc
Confidence 45599999988777543 3897 3 3457999999999999988864 25678999999999997 99996
Q ss_pred ccccccCCCCcccccccCCCccCCccccccccccchHHHhhcccCccccC
Q 005419 90 SELYRVESKPKKVPVLCNSTVSANSTQSQRAAINFCSKVWDECHNVSISS 139 (697)
Q Consensus 90 a~l~~~~~~~~~~p~lc~~~~~~~~~~~~~~~~~yc~~~~~~c~~~~~~~ 139 (697)
..-=.+...... .+...=..-.-....+|=.++++.|+++..+.
T Consensus 95 s~F~~v~~~~~~------~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~ 138 (1204)
T TIGR00917 95 SLFMNVTSTTKV------KTNSTVDSVQYYITDDFANGMYNSCSNVKFPS 138 (1204)
T ss_pred cCceeeEEeccC------CCCceEEEEEEEECHHHHHHHHHHhhCcccCC
Confidence 433222111100 00000000011266789999999999986553
No 46
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=60.15 E-value=1.9e+02 Score=29.03 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=19.9
Q ss_pred eeEEECCCCCceEEEEe-cCceEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSN-QDGKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~ 239 (697)
..+++.|||. ++|++. ..+.|++++.
T Consensus 34 ~~l~~~~dg~-~l~~~~~~~~~v~~~d~ 60 (300)
T TIGR03866 34 RGITLSKDGK-LLYVCASDSDTIQVIDL 60 (300)
T ss_pred CceEECCCCC-EEEEEECCCCeEEEEEC
Confidence 5688999995 576664 5789998864
No 47
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=58.96 E-value=2.2e+02 Score=33.57 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=16.4
Q ss_pred eeeeEeCCCCCcCCeEEEEEeecC
Q 005419 271 MMGIAFHPNFQQNGRFFVSFNCDK 294 (697)
Q Consensus 271 LLGiAfhPdF~~NG~~YvsYs~~~ 294 (697)
+=||++|| .+|.||+..|...
T Consensus 352 pEgi~~~p---~~g~vY~a~T~~~ 372 (524)
T PF05787_consen 352 PEGITVNP---DDGEVYFALTNNS 372 (524)
T ss_pred ccCeeEeC---CCCEEEEEEecCC
Confidence 35789998 4789999998654
No 48
>PTZ00421 coronin; Provisional
Probab=57.14 E-value=1.8e+02 Score=33.84 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=35.1
Q ss_pred eeEEECC-CCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCC
Q 005419 213 LNMVPHP-DGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPN 279 (697)
Q Consensus 213 ~~m~~~p-DGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPd 279 (697)
..++|.| |+ ++|+.+..+|.|+++++++.+.... ...+.. ...+-+.....++|||+
T Consensus 79 ~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~----~~~~l~-----~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 79 IDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN----ISDPIV-----HLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc----cCcceE-----EecCCCCcEEEEEeCcC
Confidence 6899999 66 4677777899999998765321100 011111 12233456788999984
No 49
>PRK02889 tolB translocation protein TolB; Provisional
Probab=56.57 E-value=3e+02 Score=30.89 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=14.6
Q ss_pred eeEEECCCCCceEEEEecCce--EEEEe
Q 005419 213 LNMVPHPDGSNRVFLSNQDGK--TWLAT 238 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~--V~~~~ 238 (697)
....|+|||..-+|+.++.|. ||+++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 456778888633455555553 44443
No 50
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=52.48 E-value=2.7e+02 Score=34.61 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.8
Q ss_pred CCeEEEeccccceeeeecCCCCCeEEEEEcCCCC
Q 005419 448 QPEIWALGFRNPWRCSFDAERPSYFLCADVGQDE 481 (697)
Q Consensus 448 ~pEI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~ 481 (697)
+.-.|..||-||-.+..|+.++ .||.+|=..++
T Consensus 1102 rkvLf~tdLVNPR~iv~D~~rg-nLYwtDWnRen 1134 (1289)
T KOG1214|consen 1102 RKVLFYTDLVNPRAIVVDPIRG-NLYWTDWNREN 1134 (1289)
T ss_pred eeEEEeecccCcceEEeecccC-ceeeccccccC
Confidence 3457899999999999999987 69999876664
No 51
>PRK05137 tolB translocation protein TolB; Provisional
Probab=52.09 E-value=3.5e+02 Score=30.32 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=12.1
Q ss_pred ccccccchHHHhhcccC
Q 005419 118 QRAAINFCSKVWDECHN 134 (697)
Q Consensus 118 ~~~~~~yc~~~~~~c~~ 134 (697)
-.+.+-+|.++|+.=.+
T Consensus 143 r~~ah~~~d~i~~~ltg 159 (435)
T PRK05137 143 RRAAHKIADAIYERLTG 159 (435)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34677888888876655
No 52
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.52 E-value=79 Score=36.18 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=51.3
Q ss_pred hcCCCCCCCceeecCCcccCCCCCCCCCCCCcEEEEEec-Cc--e-eeEEECCCCCceEEEEec-CceEEEEecCCCCCC
Q 005419 171 EFGGASGDGLVCFDGGPVSLNSSETPSPPSGLCLEKVGT-GA--Y-LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSG 245 (697)
Q Consensus 171 ~~~~~~~d~~~cf~~~~~~~~~~~~~~~p~G~~le~va~-Gl--~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg 245 (697)
||=-+++|+.+||.+... |-++.++.. +. . ...+||||| -+|.+-- +|.|+++++.++ +
T Consensus 317 YllsAs~d~~w~Fsd~~~------------g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~-~- 380 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISS------------GSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQ-T- 380 (506)
T ss_pred EEEEecCCceEEEEEccC------------CcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCc-c-
Confidence 333345677777765433 555555553 23 2 789999999 5777764 799998876432 1
Q ss_pred CcccccCCCCccCcccceeeccCCc-eeeeEeCCCCCcCCeEEEEEe
Q 005419 246 SKLELDESNPFLDLTDQVHADVELG-MMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 246 ~~l~~~~~~pflDl~~~V~~~~e~G-LLGiAfhPdF~~NG~~YvsYs 291 (697)
.+ ..+.++.| .-.|+|. .|||.-+.-.
T Consensus 381 -~~--------------a~Fpght~~vk~i~Fs----ENGY~Lat~a 408 (506)
T KOG0289|consen 381 -NV--------------AKFPGHTGPVKAISFS----ENGYWLATAA 408 (506)
T ss_pred -cc--------------ccCCCCCCceeEEEec----cCceEEEEEe
Confidence 10 11333444 3567765 7998766543
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.45 E-value=4.1e+02 Score=29.59 Aligned_cols=67 Identities=21% Similarity=0.417 Sum_probs=39.9
Q ss_pred EEEEEecCce--eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCC
Q 005419 203 CLEKVGTGAY--LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNF 280 (697)
Q Consensus 203 ~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF 280 (697)
.+.+|..|-. ..++++|||. ++||+.++|.|-++++. +++.+ .+|..+ .+..|+|+.||
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~---~~~~v------------~~i~~G--~~~~~i~~s~D- 88 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLA---TGKVV------------ATIKVG--GNPRGIAVSPD- 88 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETT---SSSEE------------EEEE-S--SEEEEEEE--T-
T ss_pred EEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECC---cccEE------------EEEecC--CCcceEEEcCC-
Confidence 4567776543 5678899995 69999999999998752 22221 233332 35789999862
Q ss_pred CcCCeEEEEE
Q 005419 281 QQNGRFFVSF 290 (697)
Q Consensus 281 ~~NG~~YvsY 290 (697)
..++|+.-
T Consensus 89 --G~~~~v~n 96 (369)
T PF02239_consen 89 --GKYVYVAN 96 (369)
T ss_dssp --TTEEEEEE
T ss_pred --CCEEEEEe
Confidence 34677653
No 54
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=48.33 E-value=3.3e+02 Score=29.28 Aligned_cols=197 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred eEEECCCCCceEEEEecCc-------------eEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCC
Q 005419 214 NMVPHPDGSNRVFLSNQDG-------------KTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNF 280 (697)
Q Consensus 214 ~m~~~pDGs~RlfV~Eq~G-------------~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF 280 (697)
+|....+| ||||.+..- +|+.+++ .+++.++. +.+.+.+.. ....|-+|++|..-
T Consensus 5 ~v~iD~~~--rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl---~t~~li~~------~~~p~~~~~-~~s~lndl~VD~~~ 72 (287)
T PF03022_consen 5 RVQIDECG--RLWVLDSGRPNGLQPPKQVCPPKLVAFDL---KTNQLIRR------YPFPPDIAP-PDSFLNDLVVDVRD 72 (287)
T ss_dssp EEEE-TTS--EEEEEE-CCHSSSSTTGHTS--EEEEEET---TTTCEEEE------EE--CCCS--TCGGEEEEEEECTT
T ss_pred EEEEcCCC--CEEEEeCCCcCCCCCCCCCCCcEEEEEEC---CCCcEEEE------EECChHHcc-cccccceEEEEccC
Q ss_pred CcC--CeEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEE
Q 005419 281 QQN--GRFFVSFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRR 358 (697)
Q Consensus 281 ~~N--G~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~ 358 (697)
.+. +++|++=+... -|.-|.+... ..++
T Consensus 73 ~~~~~~~aYItD~~~~------------------------------------glIV~dl~~~--------------~s~R 102 (287)
T PF03022_consen 73 GNCDDGFAYITDSGGP------------------------------------GLIVYDLATG--------------KSWR 102 (287)
T ss_dssp TTS-SEEEEEEETTTC------------------------------------EEEEEETTTT--------------EEEE
T ss_pred CCCcceEEEEeCCCcC------------------------------------cEEEEEccCC--------------cEEE
Q ss_pred EEeeccCCCCccceeeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCCCCcccccccccCCCC--ccCC
Q 005419 359 ILTMGLHFTSHHGGQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDKIPSAKEISDLGLWGN--YSIP 436 (697)
Q Consensus 359 Il~~~~P~~~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~--YsIP 436 (697)
++. ...........|-- +|..+--.+- .++.+..+.+.-|+.|=..+-. +. |+||
T Consensus 103 v~~---~~~~~~p~~~~~~i-~g~~~~~~dg------~~gial~~~~~d~r~LYf~~ls-------------s~~ly~v~ 159 (287)
T PF03022_consen 103 VLH---NSFSPDPDAGPFTI-GGESFQWPDG------IFGIALSPISPDGRWLYFHPLS-------------SRKLYRVP 159 (287)
T ss_dssp EET---CGCTTS-SSEEEEE-TTEEEEETTS------EEEEEE-TTSTTS-EEEEEETT--------------SEEEEEE
T ss_pred Eec---CCcceeccccceec-cCceEecCCC------ccccccCCCCCCccEEEEEeCC-------------CCcEEEEE
Q ss_pred ----CCCCCCCCCCCCCeEEEeccc--cceeeeecCCCCCeEEEEEcCCCC-----------ceeeEEeccCCC-CCcc
Q 005419 437 ----ADNPYSEDKQLQPEIWALGFR--NPWRCSFDAERPSYFLCADVGQDE-----------YEEVDIVTKGGN-YGWR 497 (697)
Q Consensus 437 ----~DNPF~~~~~~~pEI~A~GlR--NP~r~sfDp~~g~~L~~~DvG~d~-----------~EEIn~I~kG~N-YGWP 497 (697)
.+...........+|--+|-| ..-++++|+.. .||++++.++. .+.+.+|..-.. .-||
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~p 236 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWP 236 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSE
T ss_pred HHHhhCccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecc
No 55
>PRK01029 tolB translocation protein TolB; Provisional
Probab=47.05 E-value=4.7e+02 Score=29.59 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=18.1
Q ss_pred eeEEECCCCCceEEEEecCc--eEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSNQDG--KTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G--~V~~~~~ 239 (697)
...+++|||..=+|+.++.| +||++.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 46789999964355556666 5777654
No 56
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=46.98 E-value=48 Score=37.65 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=46.5
Q ss_pred eeEEECCCCCceEEEEe--c------------CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCC
Q 005419 213 LNMVPHPDGSNRVFLSN--Q------------DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHP 278 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E--q------------~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhP 278 (697)
-.++|.||| .|||+- + .|+|+..+ ..+ .+. ...||.. .+|+..+-|...|+++||
T Consensus 180 ~~l~f~pDG--~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~--~a~---~~~--~d~p~~~--~~i~s~G~RN~qGl~w~P 248 (399)
T COG2133 180 GRLVFGPDG--KLYVTTGSNGDPALAQDNVSLAGKVLRID--RAG---IIP--ADNPFPN--SEIWSYGHRNPQGLAWHP 248 (399)
T ss_pred ccEEECCCC--cEEEEeCCCCCcccccCccccccceeeec--cCc---ccc--cCCCCCC--cceEEeccCCccceeecC
Confidence 579999999 599874 2 46766543 222 222 2345655 578899999999999999
Q ss_pred CCCcCCeEEEEEe
Q 005419 279 NFQQNGRFFVSFN 291 (697)
Q Consensus 279 dF~~NG~~YvsYs 291 (697)
.+|.+|+.-.
T Consensus 249 ---~tg~Lw~~e~ 258 (399)
T COG2133 249 ---VTGALWTTEH 258 (399)
T ss_pred ---CCCcEEEEec
Confidence 5799998754
No 57
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=46.30 E-value=1.1e+02 Score=34.05 Aligned_cols=112 Identities=22% Similarity=0.312 Sum_probs=61.9
Q ss_pred cccCC-------CccchhhhcCCCCCCCceeecCCcccCCCCCC--CCCCCCcEEEEEecCce----eeEEECC---CCC
Q 005419 159 TDLWP-------SKSAFCNEFGGASGDGLVCFDGGPVSLNSSET--PSPPSGLCLEKVGTGAY----LNMVPHP---DGS 222 (697)
Q Consensus 159 ~~~~~-------~~~~fc~~~~~~~~d~~~cf~~~~~~~~~~~~--~~~p~G~~le~va~Gl~----~~m~~~p---DGs 222 (697)
..+|+ ...|-|+.-|++..|+..-|--..-..+...- ...-.|=|+-.|.++-- ..|-++| ||
T Consensus 135 ~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdg- 213 (335)
T TIGR03032 135 VPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQG- 213 (335)
T ss_pred ccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCC-
Confidence 45676 36678999999888876544321111111100 01123445544444432 4677777 55
Q ss_pred ceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEeecC
Q 005419 223 NRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFNCDK 294 (697)
Q Consensus 223 ~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~~ 294 (697)
|+||.+. .|+|..++ ++.|.-+ +...=.+=.-||+|+ ..++||+-|...
T Consensus 214 -rLwvldsgtGev~~vD-~~~G~~e----------------~Va~vpG~~rGL~f~-----G~llvVgmSk~R 263 (335)
T TIGR03032 214 -KLWLLNSGRGELGYVD-PQAGKFQ----------------PVAFLPGFTRGLAFA-----GDFAFVGLSKLR 263 (335)
T ss_pred -eEEEEECCCCEEEEEc-CCCCcEE----------------EEEECCCCCccccee-----CCEEEEEecccc
Confidence 7999986 68888775 3334311 111112234678887 567888887544
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=45.88 E-value=1.2e+02 Score=36.55 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=48.7
Q ss_pred EEEecCce-eeEEECCCCCceEEEEec-CceEEEEecCCCCCCCcccccCCCCccCcccceeeccC--CceeeeEeCCCC
Q 005419 205 EKVGTGAY-LNMVPHPDGSNRVFLSNQ-DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVE--LGMMGIAFHPNF 280 (697)
Q Consensus 205 e~va~Gl~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e--~GLLGiAfhPdF 280 (697)
..|..|-+ ++|+++|||. +++|+.+ ...|-++++.. .+.+ ++.+ ||..+.|...-| .|.|-.||++
T Consensus 315 ~yIPVGKsPHGV~vSPDGk-ylyVanklS~tVSVIDv~k---~k~~-~~~~---~~~~~~vvaevevGlGPLHTaFDg-- 384 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGK-YFIANGKLSPTVTVIDVRK---LDDL-FDGK---IKPRDAVVAEPELGLGPLHTAFDG-- 384 (635)
T ss_pred EEEECCCCccceEECCCCC-EEEEeCCCCCcEEEEEChh---hhhh-hhcc---CCccceEEEeeccCCCcceEEECC--
Confidence 34555666 8999999996 7999987 68888887521 1111 1111 455555544444 4568899987
Q ss_pred CcCCeEEEEEee
Q 005419 281 QQNGRFFVSFNC 292 (697)
Q Consensus 281 ~~NG~~YvsYs~ 292 (697)
.|..|++-.-
T Consensus 385 --~G~aytslf~ 394 (635)
T PRK02888 385 --RGNAYTTLFL 394 (635)
T ss_pred --CCCEEEeEee
Confidence 4778876653
No 59
>PRK01742 tolB translocation protein TolB; Provisional
Probab=45.18 E-value=3.7e+02 Score=30.17 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=22.9
Q ss_pred CcEEEEEecCce--eeEEECCCCCceEEEE-ecC--ceEEEEec
Q 005419 201 GLCLEKVGTGAY--LNMVPHPDGSNRVFLS-NQD--GKTWLATV 239 (697)
Q Consensus 201 G~~le~va~Gl~--~~m~~~pDGs~RlfV~-Eq~--G~V~~~~~ 239 (697)
|.....+..+-. ...+++|||. ++..+ ... ..||++++
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl 235 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDL 235 (429)
T ss_pred CCCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeC
Confidence 444444444332 7889999996 45444 333 46888764
No 60
>PRK04922 tolB translocation protein TolB; Provisional
Probab=43.97 E-value=4.5e+02 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=14.6
Q ss_pred eeEEECCCCCceEEEEecCce--EEEEe
Q 005419 213 LNMVPHPDGSNRVFLSNQDGK--TWLAT 238 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~--V~~~~ 238 (697)
...+|+|||..-+|+.++.|. ||+++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEE
Confidence 346677777533444555554 66554
No 61
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=43.93 E-value=16 Score=40.09 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=24.0
Q ss_pred eEEEeccccceeeeecCCCCCeEEEEEcCCCC
Q 005419 450 EIWALGFRNPWRCSFDAERPSYFLCADVGQDE 481 (697)
Q Consensus 450 EI~A~GlRNP~r~sfDp~~g~~L~~~DvG~d~ 481 (697)
++---.|+|||+++|.|.. .+|++|+|-+.
T Consensus 16 ~~tDp~L~N~WGia~~p~~--~~WVadngT~~ 45 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRPGG--PFWVANTGTGT 45 (336)
T ss_pred cccCccccccceeEecCCC--CEEEecCCcce
Confidence 3444568999999999975 49999999763
No 62
>PTZ00421 coronin; Provisional
Probab=42.21 E-value=3.7e+02 Score=31.28 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=35.9
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVS 289 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 289 (697)
..++|+|++.+.++.+..+|.|+++++ +.+ +.+ .........+.+++|+| +|.+.++
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl-~tg--~~~-------------~~l~~h~~~V~sla~sp----dG~lLat 185 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDV-ERG--KAV-------------EVIKCHSDQITSLEWNL----DGSLLCT 185 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEEC-CCC--eEE-------------EEEcCCCCceEEEEEEC----CCCEEEE
Confidence 578999987655666678999999875 222 111 01112234578999998 4655544
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.23 E-value=2.9e+02 Score=31.57 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=36.4
Q ss_pred eeEEECCCCCceEEEEe-cCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 213 LNMVPHPDGSNRVFLSN-QDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
..++|+|||. ++++- .++.|+++++.+++ ..+ .+..+-+....+++|+| .|.+.++-+
T Consensus 207 ~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~-------------~~l~gH~~~v~~~~f~p----~g~~i~Sgs 265 (456)
T KOG0266|consen 207 SDVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNL-------------KTLKGHSTYVTSVAFSP----DGNLLVSGS 265 (456)
T ss_pred eeeEECCCCc--EEEEecCCceEEEeeccCCC--eEE-------------EEecCCCCceEEEEecC----CCCEEEEec
Confidence 5789999995 44444 57888888763332 222 12223344568999998 567777654
No 64
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=41.15 E-value=57 Score=35.63 Aligned_cols=59 Identities=20% Similarity=0.523 Sum_probs=33.5
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFV 288 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~Yv 288 (697)
-+|.|.||| +++++.|.|.|+.-+.+++ .+.. .++.+++. ...-|+|+||+.| ++.+|+
T Consensus 190 q~~gf~~~~--~lw~~~~Gg~~~~s~~~~~--~~~w----~~~~~~~~-----~~~~~~ld~a~~~----~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDG--NLWMLARGGQIQFSDDPDD--GETW----SEPIIPIK-----TNGYGILDLAYRP----PNEIWA 248 (302)
T ss_dssp EEEEE-TTS---EEEEETTTEEEEEE-TTE--EEEE-------B-TTS-----S--S-EEEEEESS----SS-EEE
T ss_pred hhceecCCC--CEEEEeCCcEEEEccCCCC--cccc----ccccCCcc-----cCceeeEEEEecC----CCCEEE
Confidence 579999997 6999999999998653332 2222 23334431 2456899999997 455665
No 65
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=40.80 E-value=1.5e+02 Score=32.90 Aligned_cols=100 Identities=20% Similarity=0.404 Sum_probs=0.0
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceee----eEeCCCCCcCCeEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMG----IAFHPNFQQNGRFFV 288 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLG----iAfhPdF~~NG~~Yv 288 (697)
..+.|.|||+ -+++.-.--|++++....|-.-.. -.+.+.++.|+.| +|||| .+-..+.
T Consensus 162 hsL~Fs~DGe--qlfaGykrcirvFdt~RpGr~c~v------------y~t~~~~k~gq~giisc~a~sP---~~~~~~a 224 (406)
T KOG2919|consen 162 HSLQFSPDGE--QLFAGYKRCIRVFDTSRPGRDCPV------------YTTVTKGKFGQKGIISCFAFSP---MDSKTLA 224 (406)
T ss_pred eeEEecCCCC--eEeecccceEEEeeccCCCCCCcc------------hhhhhcccccccceeeeeeccC---CCCccee
Q ss_pred EEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccEEEEEEEEcCCcccccccccccCCCceEEEEeeccCCCC
Q 005419 289 SFNCDKIIWPECSGRCSCNTDVGCDPSKLGSDNGAMPCQYHSVIAEFSANGTKTVQHSSVASVKPLEVRRILTMGLHFTS 368 (697)
Q Consensus 289 sYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dng~~p~~~~~~Vsr~t~~~~~~~~~s~~~~~~~~~~r~Il~~~~P~~~ 368 (697)
..+ |..++--|..++. +.+...+ .
T Consensus 225 ~gs------------------------------------Y~q~~giy~~~~~----------------~pl~llg----g 248 (406)
T KOG2919|consen 225 VGS------------------------------------YGQRVGIYNDDGR----------------RPLQLLG----G 248 (406)
T ss_pred eec------------------------------------ccceeeeEecCCC----------------Cceeeec----c
Q ss_pred ccce--eeEeCCCCC-eEEEE
Q 005419 369 HHGG--QILFGPEDG-HLYFM 386 (697)
Q Consensus 369 H~GG--~L~FGP~DG-~LYis 386 (697)
|.|| +|.|++ || .||.+
T Consensus 249 h~gGvThL~~~e-dGn~lfsG 268 (406)
T KOG2919|consen 249 HGGGVTHLQWCE-DGNKLFSG 268 (406)
T ss_pred cCCCeeeEEecc-CcCeeccc
No 66
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=40.46 E-value=2.9e+02 Score=31.75 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=33.4
Q ss_pred eeEEECCCCCceEEEEec---CceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQ---DGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVS 289 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 289 (697)
-.++|+|||| +..+.- -|+||=+. .| .. .-||+-+ -.-.++++|.| |||--.+
T Consensus 307 ~~iaf~~DGS--L~~tGGlD~~~RvWDlR---tg--r~------im~L~gH-------~k~I~~V~fsP----NGy~lAT 362 (459)
T KOG0272|consen 307 FSIAFQPDGS--LAATGGLDSLGRVWDLR---TG--RC------IMFLAGH-------IKEILSVAFSP----NGYHLAT 362 (459)
T ss_pred ceeEecCCCc--eeeccCccchhheeecc---cC--cE------EEEeccc-------ccceeeEeECC----CceEEee
Confidence 4689999997 655542 58888543 22 21 2233321 23468999999 8987554
Q ss_pred E
Q 005419 290 F 290 (697)
Q Consensus 290 Y 290 (697)
-
T Consensus 363 g 363 (459)
T KOG0272|consen 363 G 363 (459)
T ss_pred c
Confidence 3
No 67
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=38.98 E-value=5.5e+02 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=17.8
Q ss_pred eeEEECCCCCceEEEEec-C--ceEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSNQ-D--GKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq-~--G~V~~~~~ 239 (697)
+..+++|||. +|+++.. . ..||++++
T Consensus 193 ~~p~~Spdg~-~la~~~~~~~~~~i~v~d~ 221 (417)
T TIGR02800 193 LSPAWSPDGQ-KLAYVSFESGKPEIYVQDL 221 (417)
T ss_pred ecccCCCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 6778999996 5555543 2 46888764
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=38.36 E-value=3.8e+02 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=18.5
Q ss_pred eeEEECCCCCceEEEE-ecCc--eEEEEec
Q 005419 213 LNMVPHPDGSNRVFLS-NQDG--KTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~-Eq~G--~V~~~~~ 239 (697)
...+++|||+ +|+++ ++.| .||++++
T Consensus 246 ~~~~~SPDG~-~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 246 GAPAFSPDGS-KLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCeEECCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 4678999997 55554 5566 5888864
No 69
>PRK02889 tolB translocation protein TolB; Provisional
Probab=37.57 E-value=6.4e+02 Score=28.34 Aligned_cols=26 Identities=12% Similarity=0.315 Sum_probs=17.9
Q ss_pred eeEEECCCCCceEEEEe-cC--ceEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSN-QD--GKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E-q~--G~V~~~~~ 239 (697)
...+++|||. ++.++. .. ..||++++
T Consensus 199 ~~p~wSPDG~-~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 199 ISPAWSPDGT-KLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred ccceEcCCCC-EEEEEEccCCCcEEEEEEC
Confidence 5788999996 555544 33 45898875
No 70
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=37.55 E-value=1.3e+02 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.9
Q ss_pred eeEEECCCCCceEEEEecCceEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLA 237 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~ 237 (697)
..|+++|++. .+..+..+|.|+++
T Consensus 15 ~~i~~~~~~~-~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 15 NSIAWSPDGN-FLASGSSDGTIRVW 38 (39)
T ss_dssp EEEEEETTSS-EEEEEETTSEEEEE
T ss_pred EEEEEecccc-cceeeCCCCEEEEE
Confidence 7899999974 67777789999876
No 71
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.49 E-value=4.1e+02 Score=29.30 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=16.1
Q ss_pred eeEEECCCCCceEEEEecCceEEEE
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLA 237 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~ 237 (697)
-++|+.|.. +|+||+-..--|.++
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~ 207 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIF 207 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEE
Confidence 478888876 588888754444333
No 72
>PRK01029 tolB translocation protein TolB; Provisional
Probab=37.42 E-value=6.6e+02 Score=28.46 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred eeEEECCCCCce--EEEEecCc--eEEEEec
Q 005419 213 LNMVPHPDGSNR--VFLSNQDG--KTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~R--lfV~Eq~G--~V~~~~~ 239 (697)
..=+|+|||.+. +|++.+.| .||+.++
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l 218 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSL 218 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEEC
Confidence 455899999753 34777655 5888765
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=35.31 E-value=1.9e+02 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.4
Q ss_pred cCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 267 VELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 267 ~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
+..-.-.+|||| +|.+|..-+
T Consensus 31 dsqairav~fhp----~g~lyavgs 51 (350)
T KOG0641|consen 31 DSQAIRAVAFHP----AGGLYAVGS 51 (350)
T ss_pred chhheeeEEecC----CCceEEecc
Confidence 445677899999 899998654
No 74
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.80 E-value=7.3e+02 Score=28.25 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=45.1
Q ss_pred CcEEEEEecCce---eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeC
Q 005419 201 GLCLEKVGTGAY---LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFH 277 (697)
Q Consensus 201 G~~le~va~Gl~---~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfh 277 (697)
+.++.++. |-. ...+|+|+| +++.-+.-+|.|+++++. . ++.+ ++...-..+..+++|.
T Consensus 236 ~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~-~--~~~~-------------~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR-T--GECV-------------RKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc-C--CeEE-------------EeeeccCCceEEEEEC
Confidence 35555554 544 689999999 677777789999998753 2 2222 2233334588899998
Q ss_pred CCCCcCCeEEEEEe
Q 005419 278 PNFQQNGRFFVSFN 291 (697)
Q Consensus 278 PdF~~NG~~YvsYs 291 (697)
| +|.+.++-+
T Consensus 298 ~----d~~~l~s~s 307 (456)
T KOG0266|consen 298 P----DGNLLVSAS 307 (456)
T ss_pred C----CCCEEEEcC
Confidence 7 566666544
No 75
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.51 E-value=3.8e+02 Score=26.85 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred eeEEECCCCCceEEEEe---cCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEE
Q 005419 213 LNMVPHPDGSNRVFLSN---QDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVS 289 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E---q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 289 (697)
-.+.++|+|. .+.++. ..|.|.++++. +.+. +..........++++| +|+.+++
T Consensus 104 n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~---~~~~---------------i~~~~~~~~t~~~WsP----dGr~~~t 160 (194)
T PF08662_consen 104 NTISWSPDGR-FLVLAGFGNLNGDLEFWDVR---KKKK---------------ISTFEHSDATDVEWSP----DGRYLAT 160 (194)
T ss_pred eEEEECCCCC-EEEEEEccCCCcEEEEEECC---CCEE---------------eeccccCcEEEEEEcC----CCCEEEE
Confidence 4688999994 455543 35888888642 1111 2222233467888888 7999888
Q ss_pred Eeec
Q 005419 290 FNCD 293 (697)
Q Consensus 290 Ys~~ 293 (697)
.+..
T Consensus 161 a~t~ 164 (194)
T PF08662_consen 161 ATTS 164 (194)
T ss_pred EEec
Confidence 7753
No 76
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=34.14 E-value=50 Score=39.01 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.2
Q ss_pred CCceeeEEEcCCCcEEEEecCeEEEEecCCCCcccCcccccc
Q 005419 612 LGFITSFGQDNRKDIYLLASNGVYRVVRPSRCNYNCSQENVT 653 (697)
Q Consensus 612 ~grI~sf~ed~dGeLYvlts~gIYRIv~ps~c~~~c~~~~~~ 653 (697)
.++|....+|.+|++||.+++|++|.+-|.+--..|..+...
T Consensus 246 ~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l 287 (671)
T COG3292 246 SGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHL 287 (671)
T ss_pred chheeeeecccCCCEEEeecccceeEecCCCCccccccccCC
Confidence 578999999999999999999988777777666666665544
No 77
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=33.14 E-value=3.5e+02 Score=31.46 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred eEEECCCCCceEEEEecCceEEEEec
Q 005419 214 NMVPHPDGSNRVFLSNQDGKTWLATV 239 (697)
Q Consensus 214 ~m~~~pDGs~RlfV~Eq~G~V~~~~~ 239 (697)
...|+|+|+.|+|++.+.-.+|.+++
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeec
Confidence 46789999889999999888888876
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.79 E-value=1.5e+02 Score=34.81 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred eeeEeCCCCCeEEEEecCCCCCCCCccccccccCC--CceEEEEecCCCCcccccccccCCCC--------------ccC
Q 005419 372 GQILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSL--LGKIMRLDVDKIPSAKEISDLGLWGN--------------YSI 435 (697)
Q Consensus 372 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl--~GKILRIdvDg~p~~~~~~~~~~~g~--------------YsI 435 (697)
+.+.++|..|.|||.||... |++..+.+.+- .-+|+-||+++ |. |.+
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~----p~~~~~r~gdnl~~~s~vAld~~T-------------G~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPS----PWNSHLRPGDNLYTSSIVARDPDT-------------GKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CceeEcCCCCeEEEeCCCCC----CCCCCCCCCCCccceeEEEEcccc-------------CCEEEeeeCCCCCCccccC
Q ss_pred CCCCCCCC--CCCCCCeEEEeccccceeeeecCCCCCeEE
Q 005419 436 PADNPYSE--DKQLQPEIWALGFRNPWRCSFDAERPSYFL 473 (697)
Q Consensus 436 P~DNPF~~--~~~~~pEI~A~GlRNP~r~sfDp~~g~~L~ 473 (697)
|..-..++ ..+...++.+.+=||-+-+.+|+.||+.||
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
No 79
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=31.30 E-value=4.8e+02 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.2
Q ss_pred eeeEeCCCCCcCCeEEEEEeecC
Q 005419 272 MGIAFHPNFQQNGRFFVSFNCDK 294 (697)
Q Consensus 272 LGiAfhPdF~~NG~~YvsYs~~~ 294 (697)
=+|++|| .+|.||+.+|...
T Consensus 420 E~i~~~p---~~g~Vy~~lTNn~ 439 (616)
T COG3211 420 EWIAVNP---GTGEVYFTLTNNG 439 (616)
T ss_pred cceeecC---CcceEEEEeCCCC
Confidence 3699998 5789999998654
No 80
>PRK04792 tolB translocation protein TolB; Provisional
Probab=30.27 E-value=8.6e+02 Score=27.64 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=18.3
Q ss_pred eeEEECCCCCceEE-EEecCce--EEEEec
Q 005419 213 LNMVPHPDGSNRVF-LSNQDGK--TWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~Rlf-V~Eq~G~--V~~~~~ 239 (697)
...+++|||. +++ +.++.|. ||++++
T Consensus 265 ~~~~wSPDG~-~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 265 GAPRFSPDGK-KLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCeeECCCCC-EEEEEEeCCCCeEEEEEEC
Confidence 4678999997 454 4566674 887764
No 81
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.02 E-value=3.3e+02 Score=33.21 Aligned_cols=27 Identities=41% Similarity=0.756 Sum_probs=19.7
Q ss_pred eEEEEeeccCCCCccce--eeEeCCCCCeEEEEecCC
Q 005419 356 VRRILTMGLHFTSHHGG--QILFGPEDGHLYFMVGDG 390 (697)
Q Consensus 356 ~r~Il~~~~P~~~H~GG--~L~FGP~DG~LYis~GDg 390 (697)
..|||+ .|.+- .|.|.| +|. |+++|+.
T Consensus 569 ~VRiF~------GH~~~V~al~~Sp-~Gr-~LaSg~e 597 (707)
T KOG0263|consen 569 SVRIFT------GHKGPVTALAFSP-CGR-YLASGDE 597 (707)
T ss_pred EEEEec------CCCCceEEEEEcC-CCc-eEeeccc
Confidence 466774 47664 699999 886 7788873
No 82
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=28.62 E-value=1.2e+03 Score=28.89 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=56.5
Q ss_pred eeEeCCCCCeEEEEecCCCCCCCCcc--ccccccCCCceEEEEecCCCCccc--ccccccCCCCccCCCCCCCCCC---C
Q 005419 373 QILFGPEDGHLYFMVGDGEGRGDPYN--FSQNKKSLLGKIMRLDVDKIPSAK--EISDLGLWGNYSIPADNPYSED---K 445 (697)
Q Consensus 373 ~L~FGP~DG~LYis~GDgg~~~DP~~--~aQn~~sl~GKILRIdvDg~p~~~--~~~~~~~~g~YsIP~DNPF~~~---~ 445 (697)
.+.+++..|.+|+.+|.... |-++ ..-..+...+.|+-||+++....= .......| -|.+|..--.++- .
T Consensus 379 ~~s~D~~~glvy~ptGn~~p--d~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~W-D~D~~~~p~L~d~~~~~ 455 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTP--DQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLW-DMDVPAQPSLVDLPDAD 455 (764)
T ss_pred ceEEcCCCCeEEEeCCCccc--cccCCccccCcccccceEEEEeCCCCceEEEecccCCccc-cccccCCceEEeeecCC
Confidence 47889977999999998653 1111 111124568999999997610000 00001111 1333322112221 2
Q ss_pred CCCCeEEEeccccceeeeecCCCCCeEEE
Q 005419 446 QLQPEIWALGFRNPWRCSFDAERPSYFLC 474 (697)
Q Consensus 446 ~~~pEI~A~GlRNP~r~sfDp~~g~~L~~ 474 (697)
+....+...+-+|-+-+++|+.||+.||-
T Consensus 456 G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 456 GTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 22334778889999999999999986664
No 83
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=27.86 E-value=91 Score=23.27 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCCCCccccccccCCCceEEEEecCC
Q 005419 380 DGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDK 417 (697)
Q Consensus 380 DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 417 (697)
||.||-++.-++. .-.|.|.||++++
T Consensus 1 dg~lYGTT~~GG~------------~~~GTvf~~~~~g 26 (34)
T TIGR03803 1 GGTLYGTTSGGGA------------SGFGTLYRLSTAG 26 (34)
T ss_pred CCcEEEEcccCCC------------CCceeEEEEcCCC
Confidence 6899999975542 2469999999987
No 84
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=27.41 E-value=2.5e+02 Score=33.54 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=61.4
Q ss_pred eeEeCCCCCeEEEEecCCCCCCCCcccccc--ccCCCceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCe
Q 005419 373 QILFGPEDGHLYFMVGDGEGRGDPYNFSQN--KKSLLGKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPE 450 (697)
Q Consensus 373 ~L~FGP~DG~LYis~GDgg~~~DP~~~aQn--~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 450 (697)
.|.+.|..|.+|++.=++++..| .+.| .+...|.|+|+-+.+. ....+...|..|-. ..||=+-..++...
T Consensus 421 ~i~~~p~~g~Vy~~lTNn~~r~~---~~aNpr~~n~~G~I~r~~p~~~---d~t~~~ftWdlF~~-aG~~~~~~~~~~~~ 493 (616)
T COG3211 421 WIAVNPGTGEVYFTLTNNGKRSD---DAANPRAKNGYGQIVRWIPATG---DHTDTKFTWDLFVE-AGNPSVLEGGASAN 493 (616)
T ss_pred ceeecCCcceEEEEeCCCCcccc---ccCCCcccccccceEEEecCCC---CccCccceeeeeee-cCCccccccccccC
Confidence 48888866889999988775522 2333 3678999999988662 12234445554433 34554333222222
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEcCCC
Q 005419 451 IWALGFRNPWRCSFDAERPSYFLCADVGQD 480 (697)
Q Consensus 451 I~A~GlRNP~r~sfDp~~g~~L~~~DvG~d 480 (697)
|=+-=|-+|=.|+||+.. +||+..-|..
T Consensus 494 ~~~~~f~~PDnl~fD~~G--rLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPWG--RLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCCC--CEEEEecCCC
Confidence 222225569999999984 6998776654
No 85
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=27.16 E-value=4.6e+02 Score=31.82 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCcEEEEEecCce-eeEEECCCCCceEEEEecCceEEEEecCCCC
Q 005419 191 NSSETPSPPSGLCLEKVGTGAY-LNMVPHPDGSNRVFLSNQDGKTWLATVPEPG 243 (697)
Q Consensus 191 ~~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~g 243 (697)
+++++-..|.|. +--+.||.. +.+.|.|-..+|+-|+-..|+|.++.++.+|
T Consensus 609 el~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 609 ELNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred EcCCCCCCCccc-ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 334444456663 334455655 7889999777899999999999888877655
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=26.31 E-value=5.9e+02 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=21.1
Q ss_pred eeEEECCCCCceEEEEecCceEEEEec
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~ 239 (697)
....|.-||. +|++..-.|.||++++
T Consensus 348 ~~~~fsSdsk-~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 348 SDFTFSSDSK-ELLASGGTGEVYVWNL 373 (514)
T ss_pred eeEEEecCCc-EEEEEcCCceEEEEec
Confidence 3577888884 7888888999999976
No 87
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=26.27 E-value=67 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.4
Q ss_pred ceeeEEEcCCCcEEEEec
Q 005419 614 FITSFGQDNRKDIYLLAS 631 (697)
Q Consensus 614 rI~sf~ed~dGeLYvlts 631 (697)
++.+++.|.+|.|||+..
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 467899999999999853
No 88
>PTZ00420 coronin; Provisional
Probab=25.66 E-value=1e+03 Score=28.45 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=34.1
Q ss_pred eeEEECCCCCceEE-EEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEE
Q 005419 213 LNMVPHPDGSNRVF-LSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVS 289 (697)
Q Consensus 213 ~~m~~~pDGs~Rlf-V~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 289 (697)
..++|+|++. .++ .+..+|.|+++++. .+. .+ .. + .....+..++||| +|.+.+.
T Consensus 129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl~-tg~--~~--------~~----i--~~~~~V~Slswsp----dG~lLat 184 (568)
T PTZ00420 129 SIIDWNPMNY-YIMCSSGFDSFVNIWDIE-NEK--RA--------FQ----I--NMPKKLSSLKWNI----KGNLLSG 184 (568)
T ss_pred EEEEECCCCC-eEEEEEeCCCeEEEEECC-CCc--EE--------EE----E--ecCCcEEEEEECC----CCCEEEE
Confidence 5789999985 344 45678999998752 221 11 01 1 1124578999998 4666553
No 89
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=25.47 E-value=4.4e+02 Score=30.09 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=34.9
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCC
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQ 281 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~ 281 (697)
.-++++|||. +|--..++|.|.+++ |..|. .+ -. ...+--.++.++|++|--.
T Consensus 161 lcvawsPDgk-~iASG~~dg~I~lwd-pktg~--~~----g~--------~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 161 LCVAWSPDGK-KIASGSKDGSIRLWD-PKTGQ--QI----GR--------ALRGHKKWITALAWEPLHL 213 (480)
T ss_pred EEEEECCCcc-hhhccccCCeEEEec-CCCCC--cc----cc--------cccCcccceeEEeeccccc
Confidence 4688999996 455555899999985 66543 21 11 1123346789999999544
No 90
>PRK03629 tolB translocation protein TolB; Provisional
Probab=25.34 E-value=1e+03 Score=26.83 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=22.6
Q ss_pred CcEEEEEecCce--eeEEECCCCCceEEEEecC--ceEEEEec
Q 005419 201 GLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQD--GKTWLATV 239 (697)
Q Consensus 201 G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~--G~V~~~~~ 239 (697)
|-..+.+..+-. ...+++|||..=+|+.... ..||++++
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl 230 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL 230 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 333344444432 7899999996333444333 46887764
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=25.18 E-value=6.1e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=33.0
Q ss_pred eeEEECCCCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCC
Q 005419 213 LNMVPHPDGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPN 279 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPd 279 (697)
..+.+.|++ +.++++...|.|+++++.. + +.+ ......+.....++++|+
T Consensus 55 ~~~~~~~~~-~~l~~~~~~~~i~i~~~~~-~--~~~-------------~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 55 RDVAASADG-TYLASGSSDKTIRLWDLET-G--ECV-------------RTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred eEEEECCCC-CEEEEEcCCCeEEEEEcCc-c--cce-------------EEEeccCCcEEEEEEcCC
Confidence 488999998 3688888899999987522 1 111 011123346788999985
No 92
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.42 E-value=6.1e+02 Score=28.76 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCCceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 220 DGSNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 220 DGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
||.+-++...|++.|++++++. | .-| + ...+-+.+.-|+|||| -|++-++-.
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~t-g--~cL--------~-----tL~ghdnwVr~~af~p----~Gkyi~Sca 353 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVST-G--MCL--------F-----TLVGHDNWVRGVAFSP----GGKYILSCA 353 (406)
T ss_pred CCccEEEeecccceEEEEeccC-C--eEE--------E-----EEecccceeeeeEEcC----CCeEEEEEe
Confidence 4444567777899998887642 2 221 1 1234567889999998 677666543
No 93
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.85 E-value=1.6e+02 Score=23.19 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=21.7
Q ss_pred eeEEECCCCC--ceEEEEecCceEEEEec
Q 005419 213 LNMVPHPDGS--NRVFLSNQDGKTWLATV 239 (697)
Q Consensus 213 ~~m~~~pDGs--~RlfV~Eq~G~V~~~~~ 239 (697)
..|.|+|+.. .-|+++|-.|+|-++++
T Consensus 4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred EEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 5789998654 56888889999999874
No 94
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=23.63 E-value=1e+02 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEcCCCcEEEEec-CeEEEEecCCCCcccCcccccc
Q 005419 619 GQDNRKDIYLLAS-NGVYRVVRPSRCNYNCSQENVT 653 (697)
Q Consensus 619 ~ed~dGeLYvlts-~gIYRIv~ps~c~~~c~~~~~~ 653 (697)
+..++|.|||.++ +.+-|+. .|+.++.-
T Consensus 12 ~~~E~rKLYVVDSiNdLnkLn-------lcP~~sQh 40 (128)
T PF15145_consen 12 GIPEDRKLYVVDSINDLNKLN-------LCPAGSQH 40 (128)
T ss_pred CCCCcCeEEEEecccchhhhc-------CCcccccC
Confidence 3478999999998 4466665 56666554
No 95
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=23.56 E-value=1.1e+02 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.6
Q ss_pred ceEEEEecCCCCcccccccccCCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecC
Q 005419 408 GKIMRLDVDKIPSAKEISDLGLWGNYSIPADNPYSEDKQLQPEIWALGFRNPWRCSFDA 466 (697)
Q Consensus 408 GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfDp 466 (697)
-+|.|.+.||. .+..|..-++.+|.++++|+
T Consensus 12 ~~I~~a~~dGs----------------------------~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 12 PSIERANLDGS----------------------------NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEEETTST----------------------------SEEEEEESSTSSEEEEEEET
T ss_pred cEEEEEECCCC----------------------------CeEEEEECCCCCcCEEEECC
Confidence 58999999983 13568899999999999985
No 96
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.39 E-value=6.7e+02 Score=28.14 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=10.9
Q ss_pred eeeEeCCCCCeEEEEec
Q 005419 372 GQILFGPEDGHLYFMVG 388 (697)
Q Consensus 372 G~L~FGP~DG~LYis~G 388 (697)
..+.|.| ||.+.++..
T Consensus 375 ~~~~~sP-dG~~i~~~s 390 (429)
T PRK01742 375 ESPSISP-NGIMIIYSS 390 (429)
T ss_pred CCceECC-CCCEEEEEE
Confidence 4688999 986544443
No 97
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=22.43 E-value=7e+02 Score=28.62 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=33.9
Q ss_pred CCCCCceEEEEecCceEEEEecCCCCCCC----cccccCCCCccCccccee-eccCCceeeeEeCC
Q 005419 218 HPDGSNRVFLSNQDGKTWLATVPEPGSGS----KLELDESNPFLDLTDQVH-ADVELGMMGIAFHP 278 (697)
Q Consensus 218 ~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~----~l~~~~~~pflDl~~~V~-~~~e~GLLGiAfhP 278 (697)
.++++..|.|....|.++++. |..+.-+ .|+.+...|.|.+.---. .+.+.=.|.+ +||
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~-P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYD-PSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEc-cCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 456677899999999999986 6433211 234444566666532211 1223334444 887
No 98
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.34 E-value=4.1e+02 Score=30.51 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=39.1
Q ss_pred eeEEECCCC-CceEEEEecCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 213 LNMVPHPDG-SNRVFLSNQDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 213 ~~m~~~pDG-s~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
.+++|+|+. ..-|--+.-+|.|+++.+. ..+|..||. +-..-+--+|||| +|++-.+-+
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----------~e~~l~~l~-----gH~~RVs~VafHP----sG~~L~Tas 280 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKLS-----------QETPLQDLE-----GHLARVSRVAFHP----SGKFLGTAS 280 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeeccC-----------CCcchhhhh-----cchhhheeeeecC----CCceeeecc
Confidence 689999984 3234445568988887641 124445552 1224467899999 899877665
Q ss_pred ec
Q 005419 292 CD 293 (697)
Q Consensus 292 ~~ 293 (697)
.|
T Consensus 281 fD 282 (459)
T KOG0272|consen 281 FD 282 (459)
T ss_pred cc
Confidence 54
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=22.18 E-value=1.1e+03 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCCcEEEEEecCce--eeEEECCCCCceEEEEec--CceEEEEec
Q 005419 199 PSGLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQ--DGKTWLATV 239 (697)
Q Consensus 199 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq--~G~V~~~~~ 239 (697)
..|-..+.+..+-. ...+++|||..=+|+... ...||++++
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC
Confidence 34544555554433 678899999632444443 357998874
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.10 E-value=4.1e+02 Score=29.58 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=35.8
Q ss_pred eeEEECCCCCceEEEEe-cCceEEEEecCCCCCCCcccccCCCCccCcccceeeccCCceeeeEeCCCCCcCCeEEEEEe
Q 005419 213 LNMVPHPDGSNRVFLSN-QDGKTWLATVPEPGSGSKLELDESNPFLDLTDQVHADVELGMMGIAFHPNFQQNGRFFVSFN 291 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 291 (697)
-.+.|||-.+ +++.. +++.|++++.... .. ++-| .| +.+-.-+..|-||| .|.|-+.-+
T Consensus 176 n~l~FHPre~--ILiS~srD~tvKlFDfsK~----sa----KrA~-----K~-~qd~~~vrsiSfHP----sGefllvgT 235 (430)
T KOG0640|consen 176 NDLDFHPRET--ILISGSRDNTVKLFDFSKT----SA----KRAF-----KV-FQDTEPVRSISFHP----SGEFLLVGT 235 (430)
T ss_pred cceeecchhh--eEEeccCCCeEEEEecccH----HH----HHHH-----HH-hhccceeeeEeecC----CCceEEEec
Confidence 3588999874 77776 6899999875321 11 1111 11 12233578899999 676665443
No 101
>PRK04792 tolB translocation protein TolB; Provisional
Probab=22.02 E-value=1.2e+03 Score=26.49 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=22.5
Q ss_pred CcEEEEEecCce--eeEEECCCCCceEEEEecCc--eEEEEec
Q 005419 201 GLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQDG--KTWLATV 239 (697)
Q Consensus 201 G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G--~V~~~~~ 239 (697)
|.....+.++-. ...+++|||..=+|+..+.| .||++++
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl 249 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI 249 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEEC
Confidence 433344444333 56789999973334444444 5888764
No 102
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.96 E-value=2.1e+02 Score=20.60 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=13.7
Q ss_pred eeEEECCCCCceEEEEecC
Q 005419 213 LNMVPHPDGSNRVFLSNQD 231 (697)
Q Consensus 213 ~~m~~~pDGs~RlfV~Eq~ 231 (697)
..-+++|||..=+|++++.
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 7889999997556666666
No 103
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=21.20 E-value=1.2e+03 Score=26.33 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=26.5
Q ss_pred cCC-CCccce--eeEeCCCCCeEEEEecCCCCCCCCccccccccCCCceEEEEecCC
Q 005419 364 LHF-TSHHGG--QILFGPEDGHLYFMVGDGEGRGDPYNFSQNKKSLLGKIMRLDVDK 417 (697)
Q Consensus 364 ~P~-~~H~GG--~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 417 (697)
+|. ++.||- .+..+. .|.=||+.||.+. -+|||+++.+
T Consensus 232 I~gAg~RhGDn~S~nlD~-nGnGyiFFgdnaa---------------t~ilR~~vsn 272 (442)
T PF15416_consen 232 IPGAGNRHGDNFSLNLDE-NGNGYIFFGDNAA---------------TNILRFTVSN 272 (442)
T ss_pred CcccccccCcceeEEecc-CCceEEEecCCcc---------------ceEEEEEccC
Confidence 665 455655 466666 7888999999542 2589999876
No 104
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=20.69 E-value=2.8e+02 Score=24.93 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCcEEEEEecCce--eeEEECCCCCceEEEEec-CceEEEEec
Q 005419 199 PSGLCLEKVGTGAY--LNMVPHPDGSNRVFLSNQ-DGKTWLATV 239 (697)
Q Consensus 199 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq-~G~V~~~~~ 239 (697)
|..=.++++++||. =+++.++|++ -++|+|- ..+|+.+.+
T Consensus 44 p~t~~~~vl~~~L~fpNGVals~d~~-~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 44 PSTKETTVLLDGLYFPNGVALSPDES-FVLVAETGRYRILRYWL 86 (89)
T ss_dssp TTTTEEEEEEEEESSEEEEEE-TTSS-EEEEEEGGGTEEEEEES
T ss_pred CCCCeEEEehhCCCccCeEEEcCCCC-EEEEEeccCceEEEEEE
Confidence 34446789999998 7899999997 5999996 578877654
Done!