BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005421
(697 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana
GN=DRM2 PE=1 SV=1
Length = 626
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)
Query: 361 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 420
RS+ ++ PP+F+Y NV W +S L+ + PEFV+S+YF +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356
Query: 421 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 480
NRF I P P TI DA P +K+WWP WD R L+CI + T G +QL R L
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415
Query: 481 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 538
+ QR ++ + +K NLVWVG K P++P+ +E ILG+P NHT+ G S T R
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475
Query: 539 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 598
+SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535
Query: 599 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 658
NR ILK +WE + QTGEL++ DIQ LT E L+ K G D VI + + +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595
Query: 659 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
+S ++ E D SL++E+ R+++ VR+ R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 47 ASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQE--SNSQSSDSL 104
A SS S F+ MGF V K I+E G+DN++ + L+ ++ + + D +
Sbjct: 107 AGSSKSKAIDHFLAMGFDEEKVVKAIQEHGEDNMEAIANALLSCPEAKKLPAAVEEEDGI 166
Query: 105 DTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164
D D D N +++ +++PN + G I SL+ M FS E A+++ G++
Sbjct: 167 DWSSSDDDTNYTDMLNS--DDEKDPNSNENGSKIR---SLVKMGFSELEASLAVERCGEN 221
Query: 165 APVYELVDFITAAQISENF 183
+ EL DF+ AAQ++ F
Sbjct: 222 VDIAELTDFLCAAQMAREF 240
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 49/208 (23%)
Query: 56 SSFIGMGFSPSLVDKVIEEKGQD-NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDAN 114
++ MGF ++ + I+E G + ++++T+ +Y++ E+ S S ++D
Sbjct: 66 ATLFDMGFPVEMISRAIKETGPNVETSVIIDTISKYSSDCEAGSSKSKAID--------- 116
Query: 115 SPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD---APVYELV 171
L M F +V A+ + G+D A L+
Sbjct: 117 ----------------------------HFLAMGFDEEKVVKAIQEHGEDNMEAIANALL 148
Query: 172 DFITAAQISENFEKE-------TDDAPHDNDGTN-EDKSDETLYGTMEITLQLLEMGFSE 223
A ++ E+E +DD + D N +D+ D L++MGFSE
Sbjct: 149 SCPEAKKLPAAVEEEDGIDWSSSDDDTNYTDMLNSDDEKDPNSNENGSKIRSLVKMGFSE 208
Query: 224 NQVSLAIEKFGSKTPISELADKIFSGQI 251
+ SLA+E+ G I+EL D + + Q+
Sbjct: 209 LEASLAVERCGENVDIAELTDFLCAAQM 236
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 291 bits (746), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 201/645 (31%), Positives = 320/645 (49%), Gaps = 91/645 (14%)
Query: 56 SSFIGMGFSPSLVDKVIEEKGQDNVD--LLLETLIEYNALQESNSQSSDSLDTLFGDKDA 113
+SF+ MGFS ++ + IEE N++ ++LETL Y+A E++S S ++ A
Sbjct: 64 ASFVEMGFSTQMIARAIEETAGANMEPMMILETLFNYSASTEASSSKSKVINHFI----A 119
Query: 114 NSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDF 173
PE +++ +E D G E +LL + EVD KL + + ++
Sbjct: 120 MGFPE-EHVIKAMQEHGDEDVG---EITNALL----TYAEVD----KLRESEDMNININD 167
Query: 174 ITAAQISENFEKETDDAPHD-NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEK 232
+ + +DD + N+ +NED+ I L++MG+ ++AIE+
Sbjct: 168 DDDDNL---YSLSSDDEEDELNNSSNEDR----------ILQALIKMGYLREDAAIAIER 214
Query: 233 FGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKR 292
G + E+ D I + Q+ +R +D + Y PD + MN ++ R
Sbjct: 215 CGEDASMEEVVDFICAAQM------ARQFDEI-----YAEPD---KKELMNNNKKRR--- 257
Query: 293 PKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQ 352
+ E P++ + D S V PN M
Sbjct: 258 -------------------TYTET-----PRKPNTDQLISLPKEMIGFGV-PNHPGLMMH 292
Query: 353 QAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRR 412
+ I + PP+F+Y NV W K+S LY + PEFV+S++F A +R+
Sbjct: 293 RPV------PIPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARK 346
Query: 413 EGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERF 472
GY+HNLP NRF I P TIQ+A P TK+WWPSWD R L+C+ + + S+L E+
Sbjct: 347 RGYIHNLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKI 405
Query: 473 EKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGN 532
+ L G Q+ +++ +K NLVWVG KL P+D + +E +LG+P +HT+ G
Sbjct: 406 REALERYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGI 465
Query: 533 SLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 592
S T R +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+ V+
Sbjct: 466 STTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVV 525
Query: 593 SIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 652
S+E S+ NR IL+ +WE + Q G L + +D+Q L E L+ + G D VI +
Sbjct: 526 SVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS---- 581
Query: 653 IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 697
P + ++ ++ ++ SL++++ R+++ VR R
Sbjct: 582 -PCNNLAGGNRHHRVGLGGEH-----SSLFFDYCRILEAVRRKAR 620
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 47 ASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY---NALQESNSQSSDS 103
ASSS S + + FI MGF V K ++E G ++V + L+ Y + L+ES
Sbjct: 106 ASSSKSKVINHFIAMGFPEEHVIKAMQEHGDEDVGEITNALLTYAEVDKLRES------- 158
Query: 104 LDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 163
+ + + + + + ++ EE + + +L+ M + + A+++ G+
Sbjct: 159 -EDMNININDDDDDNLYSLSSDDEEDELNNSSNEDRILQALIKMGYLREDAAIAIERCGE 217
Query: 164 DAPVYELVDFITAAQISENFEK 185
DA + E+VDFI AAQ++ F++
Sbjct: 218 DASMEEVVDFICAAQMARQFDE 239
>sp|Q5ZKH8|ODR4_CHICK Protein odr-4 homolog OS=Gallus gallus GN=ODR4 PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 502 WVGAYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 559
+V +G P+ +I P Q GN+ ++L+S+ + T H S +
Sbjct: 25 YVTGLLIGQCSPQRDYIIRAARTPPKEEQKEGNTSPSKLDSIDEEWFT----AHASQISR 80
Query: 560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605
M PGGL +LSVF I E++ K + SIE S T RR+ K
Sbjct: 81 MLPGGLLVLSVFI-IATPELSKDCQNTLRKLIFSIEKSLTKRRLWK 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,117,056
Number of Sequences: 539616
Number of extensions: 11376726
Number of successful extensions: 23934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 23879
Number of HSP's gapped (non-prelim): 91
length of query: 697
length of database: 191,569,459
effective HSP length: 125
effective length of query: 572
effective length of database: 124,117,459
effective search space: 70995186548
effective search space used: 70995186548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)