Query 005421
Match_columns 697
No_of_seqs 237 out of 952
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0270 Dcm Site-specific DNA 99.9 7.5E-24 1.6E-28 224.6 8.8 109 563-695 2-110 (328)
2 PF00145 DNA_methylase: C-5 cy 99.9 7.2E-24 1.6E-28 217.3 7.7 105 565-696 1-105 (335)
3 PRK10458 DNA cytosine methylas 99.9 2.9E-22 6.4E-27 222.0 10.5 126 563-696 87-222 (467)
4 cd00315 Cyt_C5_DNA_methylase C 99.8 2.4E-21 5.2E-26 201.1 8.6 106 565-696 1-106 (275)
5 TIGR00675 dcm DNA-methyltransf 99.8 2.6E-21 5.7E-26 204.4 8.6 103 567-696 1-103 (315)
6 cd00315 Cyt_C5_DNA_methylase C 99.1 5E-11 1.1E-15 124.3 5.4 157 368-557 102-273 (275)
7 KOG0919 C-5 cytosine-specific 98.9 1.1E-09 2.3E-14 112.8 6.8 110 564-695 3-112 (338)
8 PRK10458 DNA cytosine methylas 98.3 4E-07 8.6E-12 102.3 4.2 56 505-560 398-455 (467)
9 PF00145 DNA_methylase: C-5 cy 98.2 2.8E-07 6.1E-12 95.1 -1.0 54 502-557 280-333 (335)
10 PF13659 Methyltransf_26: Meth 97.7 9.7E-05 2.1E-09 65.8 6.7 83 564-654 1-84 (117)
11 TIGR00675 dcm DNA-methyltransf 97.6 7.8E-06 1.7E-10 87.3 -1.1 177 367-550 98-308 (315)
12 TIGR03704 PrmC_rel_meth putati 97.3 0.00019 4.1E-09 74.5 4.1 80 564-655 87-168 (251)
13 COG0270 Dcm Site-specific DNA 97.2 0.00017 3.6E-09 77.6 1.8 176 367-558 106-321 (328)
14 PF03602 Cons_hypoth95: Conser 97.1 0.00059 1.3E-08 68.0 5.3 99 533-649 23-123 (183)
15 TIGR00095 RNA methyltransferas 97.0 0.002 4.3E-08 64.4 7.1 82 564-651 50-132 (189)
16 PF09445 Methyltransf_15: RNA 96.9 0.0013 2.9E-08 64.9 4.9 82 566-656 2-85 (163)
17 PF02475 Met_10: Met-10+ like- 96.8 0.0025 5.4E-08 64.8 6.7 81 561-651 99-180 (200)
18 PRK15128 23S rRNA m(5)C1962 me 96.8 0.003 6.6E-08 70.1 7.6 82 563-650 220-303 (396)
19 PHA03412 putative methyltransf 96.7 0.0019 4.2E-08 67.4 5.3 122 509-654 5-128 (241)
20 PRK10909 rsmD 16S rRNA m(2)G96 96.7 0.0046 1E-07 62.6 7.7 77 564-649 54-130 (199)
21 COG2520 Predicted methyltransf 96.6 0.0028 6E-08 69.3 5.9 118 515-650 141-266 (341)
22 PF13847 Methyltransf_31: Meth 96.6 0.0046 1E-07 58.4 6.7 83 563-653 3-86 (152)
23 PF00627 UBA: UBA/TS-N domain; 96.6 0.0039 8.4E-08 46.8 4.7 36 137-174 2-37 (37)
24 smart00165 UBA Ubiquitin assoc 96.5 0.0052 1.1E-07 45.6 4.5 35 139-175 3-37 (37)
25 TIGR01177 conserved hypothetic 96.4 0.017 3.7E-07 62.0 10.1 82 562-654 181-262 (329)
26 TIGR00446 nop2p NOL1/NOP2/sun 96.3 0.0097 2.1E-07 62.1 7.2 85 563-655 71-155 (264)
27 TIGR02085 meth_trns_rumB 23S r 96.3 0.006 1.3E-07 66.9 5.8 76 564-649 234-309 (374)
28 cd00194 UBA Ubiquitin Associat 96.3 0.0095 2E-07 44.4 5.1 35 139-175 3-37 (38)
29 PRK03522 rumB 23S rRNA methylu 96.3 0.0084 1.8E-07 64.1 6.7 80 564-653 174-253 (315)
30 PF05175 MTS: Methyltransferas 96.3 0.013 2.8E-07 57.0 7.4 77 563-649 31-107 (170)
31 COG0742 N6-adenine-specific me 96.2 0.022 4.8E-07 57.6 8.9 100 533-651 24-125 (187)
32 PRK09328 N5-glutamine S-adenos 96.2 0.014 3E-07 60.0 7.6 82 563-654 108-189 (275)
33 PHA03411 putative methyltransf 96.1 0.0092 2E-07 63.7 6.2 96 542-655 46-141 (279)
34 TIGR00479 rumA 23S rRNA (uraci 95.9 0.02 4.4E-07 63.5 7.6 83 563-652 292-374 (431)
35 smart00650 rADc Ribosomal RNA 95.9 0.019 4.2E-07 55.5 6.5 76 563-651 13-88 (169)
36 PRK14904 16S rRNA methyltransf 95.8 0.018 3.9E-07 64.5 7.0 84 563-656 250-334 (445)
37 TIGR00537 hemK_rel_arch HemK-r 95.8 0.032 7E-07 54.3 7.6 78 564-655 20-97 (179)
38 PRK10901 16S rRNA methyltransf 95.7 0.024 5.3E-07 63.2 7.4 85 563-655 244-328 (427)
39 PRK11783 rlmL 23S rRNA m(2)G24 95.6 0.032 7E-07 66.2 8.1 80 564-652 539-620 (702)
40 PRK14902 16S rRNA methyltransf 95.5 0.034 7.4E-07 62.2 7.5 85 563-655 250-335 (444)
41 PRK13168 rumA 23S rRNA m(5)U19 95.5 0.032 6.9E-07 62.5 7.3 84 563-653 297-380 (443)
42 TIGR00536 hemK_fam HemK family 95.4 0.052 1.1E-06 57.2 8.3 80 565-654 116-196 (284)
43 PRK05031 tRNA (uracil-5-)-meth 95.4 0.028 6.1E-07 61.6 6.4 82 565-650 208-298 (362)
44 cd02440 AdoMet_MTases S-adenos 95.4 0.04 8.6E-07 45.3 5.8 79 566-653 1-79 (107)
45 PRK14967 putative methyltransf 95.3 0.034 7.4E-07 56.3 6.3 77 563-651 36-112 (223)
46 TIGR03533 L3_gln_methyl protei 95.3 0.055 1.2E-06 57.4 8.0 81 564-654 122-203 (284)
47 PRK11805 N5-glutamine S-adenos 95.2 0.045 9.8E-07 58.8 7.2 80 565-654 135-215 (307)
48 PRK14901 16S rRNA methyltransf 95.2 0.047 1E-06 61.0 7.5 89 563-655 252-340 (434)
49 smart00165 UBA Ubiquitin assoc 95.2 0.023 4.9E-07 42.2 3.4 34 54-88 4-37 (37)
50 KOG0944 Ubiquitin-specific pro 95.1 0.071 1.5E-06 62.4 8.7 101 54-178 574-674 (763)
51 TIGR03534 RF_mod_PrmC protein- 95.0 0.051 1.1E-06 54.8 6.5 82 563-654 87-168 (251)
52 COG2265 TrmA SAM-dependent met 95.0 0.029 6.3E-07 63.2 5.0 78 563-649 293-371 (432)
53 PF05958 tRNA_U5-meth_tr: tRNA 94.9 0.033 7.1E-07 60.8 5.2 41 566-609 199-239 (352)
54 cd00194 UBA Ubiquitin Associat 94.9 0.037 8.1E-07 41.2 4.0 34 54-88 4-37 (38)
55 PF10672 Methyltrans_SAM: S-ad 94.9 0.092 2E-06 56.3 8.4 82 564-654 124-207 (286)
56 COG2263 Predicted RNA methylas 94.8 0.077 1.7E-06 54.1 7.1 72 563-649 45-117 (198)
57 PRK14903 16S rRNA methyltransf 94.7 0.076 1.6E-06 59.6 7.4 86 563-656 237-323 (431)
58 PF09288 UBA_3: Fungal ubiquit 94.7 0.023 4.9E-07 47.1 2.4 37 53-89 11-55 (55)
59 PF00627 UBA: UBA/TS-N domain; 94.6 0.04 8.6E-07 41.4 3.4 33 54-87 5-37 (37)
60 PRK04338 N(2),N(2)-dimethylgua 94.6 0.063 1.4E-06 59.5 6.4 76 564-649 58-134 (382)
61 TIGR02143 trmA_only tRNA (urac 94.6 0.054 1.2E-06 59.2 5.8 83 565-650 199-289 (353)
62 TIGR02987 met_A_Alw26 type II 94.4 0.043 9.3E-07 62.6 4.6 87 563-653 31-125 (524)
63 PRK00117 recX recombination re 94.4 0.89 1.9E-05 43.9 13.0 124 52-236 29-156 (157)
64 PRK14896 ksgA 16S ribosomal RN 94.3 0.079 1.7E-06 55.1 6.1 74 563-651 29-102 (258)
65 COG5207 UBP14 Isopeptidase T [ 93.8 0.24 5.2E-06 56.7 8.8 88 54-164 561-648 (749)
66 KOG0919 C-5 cytosine-specific 93.7 0.032 7E-07 58.7 1.8 51 507-557 286-336 (338)
67 COG1092 Predicted SAM-dependen 93.5 0.32 7E-06 54.4 9.2 106 564-695 218-325 (393)
68 TIGR00563 rsmB ribosomal RNA s 93.4 0.23 5E-06 55.5 8.0 85 563-656 238-325 (426)
69 TIGR02021 BchM-ChlM magnesium 93.4 0.23 4.9E-06 49.9 7.2 44 563-609 55-98 (219)
70 PRK14968 putative methyltransf 93.3 0.26 5.6E-06 47.3 7.1 78 563-652 23-102 (188)
71 PRK00274 ksgA 16S ribosomal RN 93.2 0.2 4.4E-06 52.6 6.8 74 563-650 42-115 (272)
72 PF07499 RuvA_C: RuvA, C-termi 93.2 0.2 4.2E-06 39.8 5.0 38 136-173 2-41 (47)
73 PF01170 UPF0020: Putative RNA 93.1 0.085 1.9E-06 52.3 3.6 103 563-691 28-139 (179)
74 KOG3420 Predicted RNA methylas 93.1 0.14 3E-06 50.7 4.8 76 563-649 48-123 (185)
75 TIGR00308 TRM1 tRNA(guanine-26 93.0 0.16 3.5E-06 56.3 5.9 77 564-649 45-123 (374)
76 TIGR00080 pimt protein-L-isoas 93.0 0.33 7.1E-06 48.9 7.6 83 563-653 77-159 (215)
77 PF12847 Methyltransf_18: Meth 92.8 0.3 6.5E-06 43.0 6.3 74 564-648 2-78 (112)
78 TIGR02469 CbiT precorrin-6Y C5 92.8 0.36 7.8E-06 42.8 6.8 76 563-646 19-94 (124)
79 TIGR00138 gidB 16S rRNA methyl 92.7 0.26 5.5E-06 49.0 6.2 74 564-647 43-116 (181)
80 PRK09489 rsmC 16S ribosomal RN 92.6 0.27 5.8E-06 53.8 6.9 73 566-650 199-271 (342)
81 TIGR00755 ksgA dimethyladenosi 92.5 0.23 5E-06 51.4 6.0 75 563-649 29-103 (253)
82 TIGR00406 prmA ribosomal prote 92.4 0.25 5.5E-06 52.3 6.3 45 563-609 159-203 (288)
83 PF02384 N6_Mtase: N-6 DNA Met 92.4 0.15 3.3E-06 53.8 4.6 107 539-653 23-138 (311)
84 PTZ00338 dimethyladenosine tra 92.3 0.23 4.9E-06 53.3 5.7 98 539-651 12-112 (294)
85 PRK07402 precorrin-6B methylas 92.1 0.41 8.8E-06 47.4 6.8 47 563-610 40-86 (196)
86 TIGR02752 MenG_heptapren 2-hep 92.0 0.48 1.1E-05 47.5 7.3 82 563-653 45-127 (231)
87 COG4123 Predicted O-methyltran 92.0 0.25 5.4E-06 52.2 5.4 81 564-652 45-127 (248)
88 COG2890 HemK Methylase of poly 91.8 0.27 5.8E-06 52.3 5.5 78 566-654 113-190 (280)
89 PLN02396 hexaprenyldihydroxybe 91.4 0.42 9.2E-06 52.0 6.7 43 563-608 131-173 (322)
90 PRK14135 recX recombination re 91.2 2.9 6.2E-05 43.7 12.3 130 52-239 75-208 (263)
91 PRK00517 prmA ribosomal protei 91.0 0.37 8.1E-06 49.8 5.5 52 556-609 112-163 (250)
92 KOG0944 Ubiquitin-specific pro 90.9 1.2 2.5E-05 52.8 9.8 101 138-250 572-674 (763)
93 PRK14966 unknown domain/N5-glu 90.8 0.46 9.9E-06 53.7 6.4 77 564-649 252-328 (423)
94 PRK11207 tellurite resistance 90.7 0.76 1.6E-05 45.9 7.2 42 564-608 31-72 (197)
95 PRK00121 trmB tRNA (guanine-N( 90.7 0.68 1.5E-05 46.5 6.9 81 563-650 40-121 (202)
96 PRK08287 cobalt-precorrin-6Y C 90.7 0.8 1.7E-05 44.9 7.2 46 563-609 31-76 (187)
97 PRK07580 Mg-protoporphyrin IX 90.3 0.77 1.7E-05 45.8 6.9 45 563-610 63-107 (230)
98 PRK00377 cbiT cobalt-precorrin 90.1 0.85 1.8E-05 45.4 6.9 45 563-608 40-85 (198)
99 PRK14135 recX recombination re 90.0 3.8 8.3E-05 42.8 11.9 136 50-236 124-262 (263)
100 KOG1227 Putative methyltransfe 89.7 0.3 6.6E-06 53.0 3.6 62 545-609 177-239 (351)
101 PRK00107 gidB 16S rRNA methylt 89.7 0.55 1.2E-05 47.2 5.2 79 559-647 41-119 (187)
102 PRK00312 pcm protein-L-isoaspa 89.6 1.1 2.4E-05 44.8 7.4 80 563-653 78-157 (212)
103 COG2227 UbiG 2-polyprenyl-3-me 89.4 0.92 2E-05 47.9 6.8 71 563-645 59-129 (243)
104 PLN02585 magnesium protoporphy 89.1 0.81 1.8E-05 49.7 6.4 42 563-607 144-185 (315)
105 PRK01544 bifunctional N5-gluta 89.0 0.86 1.9E-05 52.4 6.9 80 564-653 139-219 (506)
106 PRK11036 putative S-adenosyl-L 89.0 0.95 2.1E-05 46.7 6.5 78 562-649 43-121 (255)
107 PRK15001 SAM-dependent 23S rib 88.9 0.81 1.7E-05 51.0 6.3 75 565-650 230-308 (378)
108 TIGR00478 tly hemolysin TlyA f 88.7 0.77 1.7E-05 47.8 5.6 75 563-647 75-150 (228)
109 KOG2730 Methylase [General fun 88.7 0.63 1.4E-05 48.9 4.9 102 548-656 79-181 (263)
110 PF13649 Methyltransf_25: Meth 87.8 1.2 2.7E-05 39.1 5.6 70 567-646 1-73 (101)
111 COG2264 PrmA Ribosomal protein 87.6 0.93 2E-05 49.2 5.6 60 548-609 147-206 (300)
112 PLN02781 Probable caffeoyl-CoA 87.6 0.77 1.7E-05 47.4 4.8 93 550-648 56-152 (234)
113 COG0116 Predicted N6-adenine-s 87.5 2.4 5.3E-05 47.5 8.9 115 551-692 180-333 (381)
114 PTZ00098 phosphoethanolamine N 87.3 1.8 4E-05 45.3 7.5 72 514-607 22-94 (263)
115 PF09288 UBA_3: Fungal ubiquit 87.3 0.96 2.1E-05 37.7 4.2 29 137-165 9-37 (55)
116 TIGR00091 tRNA (guanine-N(7)-) 87.3 1.8 3.9E-05 43.0 7.1 83 563-651 16-98 (194)
117 KOG2904 Predicted methyltransf 87.2 0.95 2.1E-05 48.9 5.3 82 566-651 151-233 (328)
118 TIGR03840 TMPT_Se_Te thiopurin 87.2 1.2 2.7E-05 45.5 6.0 40 562-604 33-72 (213)
119 PRK11188 rrmJ 23S rRNA methylt 87.0 1.6 3.4E-05 44.4 6.6 74 562-647 50-124 (209)
120 PF00398 RrnaAD: Ribosomal RNA 86.9 0.79 1.7E-05 47.9 4.5 77 563-649 30-106 (262)
121 TIGR00477 tehB tellurite resis 86.8 2 4.4E-05 42.8 7.1 74 564-650 31-104 (195)
122 PLN02244 tocopherol O-methyltr 86.5 1.8 3.9E-05 47.1 7.1 74 562-646 117-192 (340)
123 PRK13942 protein-L-isoaspartat 86.3 2.1 4.5E-05 43.4 7.1 75 563-646 76-151 (212)
124 PRK12335 tellurite resistance 86.1 1.8 3.8E-05 45.8 6.6 42 566-610 123-164 (287)
125 PRK13944 protein-L-isoaspartat 86.0 2.6 5.7E-05 42.3 7.6 81 563-652 72-154 (205)
126 PRK11783 rlmL 23S rRNA m(2)G24 85.9 2.1 4.5E-05 51.2 7.8 54 590-649 258-312 (702)
127 PRK10742 putative methyltransf 85.5 2.9 6.3E-05 44.4 7.8 85 565-652 90-176 (250)
128 PF06325 PrmA: Ribosomal prote 85.2 1.4 3.1E-05 47.6 5.4 54 554-609 152-205 (295)
129 PRK00811 spermidine synthase; 84.9 1.8 3.8E-05 46.1 5.9 78 562-648 75-158 (283)
130 PRK05134 bifunctional 3-demeth 84.4 2.3 4.9E-05 42.9 6.2 43 563-608 48-90 (233)
131 TIGR02072 BioC biotin biosynth 84.3 1.4 3E-05 43.6 4.6 76 564-652 35-110 (240)
132 PRK10258 biotin biosynthesis p 84.0 2.2 4.7E-05 43.7 6.0 70 564-649 43-112 (251)
133 COG5207 UBP14 Isopeptidase T [ 84.0 4.7 0.0001 46.7 9.0 84 137-232 558-644 (749)
134 PRK13255 thiopurine S-methyltr 83.6 2.6 5.6E-05 43.3 6.3 40 562-604 36-75 (218)
135 PRK11933 yebU rRNA (cytosine-C 83.3 2.7 5.8E-05 48.2 6.9 86 563-656 113-199 (470)
136 PRK05785 hypothetical protein; 83.2 2.7 5.9E-05 43.1 6.3 71 563-652 51-122 (226)
137 PF01555 N6_N4_Mtase: DNA meth 82.8 1.5 3.2E-05 42.9 4.1 39 563-604 191-229 (231)
138 PRK00117 recX recombination re 82.8 3.5 7.6E-05 39.8 6.6 80 50-164 77-156 (157)
139 TIGR01934 MenG_MenH_UbiE ubiqu 82.6 3.6 7.8E-05 40.4 6.7 74 563-646 39-112 (223)
140 TIGR01983 UbiG ubiquinone bios 82.3 3.2 7E-05 41.3 6.3 43 563-608 45-87 (224)
141 KOG2561 Adaptor protein NUB1, 82.0 2.3 4.9E-05 48.5 5.5 141 55-236 307-456 (568)
142 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.9 3.7 8E-05 43.8 6.9 87 564-656 86-172 (283)
143 PRK13943 protein-L-isoaspartat 81.7 3.4 7.4E-05 45.2 6.7 77 563-647 80-156 (322)
144 KOG2561 Adaptor protein NUB1, 81.5 3.5 7.6E-05 47.1 6.7 90 55-178 379-468 (568)
145 PLN02233 ubiquinone biosynthes 81.0 5.3 0.00011 41.8 7.6 77 563-648 73-153 (261)
146 PRK00216 ubiE ubiquinone/menaq 80.7 4.4 9.4E-05 40.2 6.6 75 564-646 52-127 (239)
147 PF02086 MethyltransfD12: D12 80.7 1.2 2.5E-05 45.5 2.6 50 557-609 12-63 (260)
148 PRK01683 trans-aconitate 2-met 80.7 4.1 9E-05 41.7 6.6 74 563-651 31-104 (258)
149 PF02005 TRM: N2,N2-dimethylgu 80.4 2.2 4.8E-05 47.6 4.8 55 553-609 39-95 (377)
150 PF07499 RuvA_C: RuvA, C-termi 80.3 2.4 5.1E-05 33.7 3.6 31 213-243 7-39 (47)
151 PLN03196 MOC1-like protein; Pr 80.2 4.7 0.0001 46.4 7.5 147 52-235 197-366 (487)
152 PRK11727 23S rRNA mA1618 methy 79.9 5.3 0.00011 43.8 7.4 81 563-650 114-199 (321)
153 COG1041 Predicted DNA modifica 79.7 2.8 6E-05 46.5 5.1 77 563-650 197-274 (347)
154 PF03848 TehB: Tellurite resis 79.4 4.9 0.00011 41.0 6.5 41 564-607 31-71 (192)
155 TIGR00601 rad23 UV excision re 79.3 1.9 4.1E-05 48.2 3.8 173 54-236 159-364 (378)
156 PF01728 FtsJ: FtsJ-like methy 79.2 2.8 6.2E-05 40.8 4.6 80 563-653 23-106 (181)
157 TIGR00438 rrmJ cell division p 78.7 4.7 0.0001 39.7 6.0 73 562-647 31-105 (188)
158 PF01209 Ubie_methyltran: ubiE 78.5 4.1 8.9E-05 42.3 5.8 77 563-648 47-124 (233)
159 PLN02672 methionine S-methyltr 78.1 3.8 8.3E-05 51.4 6.3 46 564-610 119-164 (1082)
160 PRK08317 hypothetical protein; 78.0 6.7 0.00014 38.6 6.9 45 563-607 19-63 (241)
161 TIGR00417 speE spermidine synt 77.9 6.4 0.00014 41.4 7.1 47 563-610 72-118 (270)
162 COG2226 UbiE Methylase involve 77.8 6.2 0.00013 41.6 6.9 82 563-653 51-132 (238)
163 PRK11873 arsM arsenite S-adeno 76.8 5.9 0.00013 41.1 6.4 77 562-647 76-153 (272)
164 PRK14134 recX recombination re 76.7 29 0.00063 37.3 11.7 124 54-235 81-208 (283)
165 PRK06202 hypothetical protein; 75.5 7.1 0.00015 39.6 6.4 44 562-606 59-106 (232)
166 PRK14103 trans-aconitate 2-met 75.4 5.3 0.00012 41.2 5.6 72 563-651 29-100 (255)
167 PLN02336 phosphoethanolamine N 75.3 3.4 7.4E-05 46.5 4.5 79 564-653 38-116 (475)
168 cd04708 BAH_plantDCM_II BAH, o 75.0 1.1 2.4E-05 46.1 0.5 16 562-577 187-202 (202)
169 PF03291 Pox_MCEL: mRNA cappin 74.9 5 0.00011 44.1 5.5 44 563-608 62-105 (331)
170 PF08241 Methyltransf_11: Meth 74.8 7.8 0.00017 32.3 5.5 66 568-647 1-67 (95)
171 PRK04148 hypothetical protein; 73.5 7.6 0.00016 37.7 5.7 69 564-649 17-86 (134)
172 COG0030 KsgA Dimethyladenosine 73.4 6.5 0.00014 42.0 5.7 76 564-651 31-106 (259)
173 PRK14134 recX recombination re 71.9 43 0.00094 36.1 11.6 83 50-163 126-208 (283)
174 PF01135 PCMT: Protein-L-isoas 71.4 7.4 0.00016 40.0 5.5 94 548-652 59-153 (209)
175 PF05185 PRMT5: PRMT5 arginine 71.4 7.9 0.00017 44.2 6.2 80 564-653 187-275 (448)
176 TIGR03587 Pse_Me-ase pseudamin 71.1 11 0.00023 38.3 6.5 44 562-607 42-86 (204)
177 PRK06922 hypothetical protein; 70.3 7.7 0.00017 46.5 6.0 85 557-650 413-497 (677)
178 PRK15451 tRNA cmo(5)U34 methyl 70.0 10 0.00023 39.1 6.3 66 561-626 54-121 (247)
179 PRK14136 recX recombination re 69.7 50 0.0011 36.4 11.4 120 54-236 182-305 (309)
180 COG0144 Sun tRNA and rRNA cyto 68.0 15 0.00031 40.7 7.2 88 564-656 157-245 (355)
181 PRK14600 ruvA Holliday junctio 67.5 10 0.00022 38.6 5.3 39 137-175 145-183 (186)
182 PRK13256 thiopurine S-methyltr 67.3 14 0.00029 38.7 6.4 40 563-605 43-82 (226)
183 PF13489 Methyltransf_23: Meth 67.2 7.8 0.00017 35.8 4.3 40 561-603 20-59 (161)
184 PF02631 RecX: RecX family; I 67.0 82 0.0018 29.1 10.9 113 59-232 2-118 (121)
185 PRK04266 fibrillarin; Provisio 66.5 17 0.00037 37.7 6.9 77 563-648 72-149 (226)
186 PRK03612 spermidine synthase; 66.3 13 0.00028 43.2 6.6 81 562-650 296-383 (521)
187 PRK14137 recX recombination re 66.1 70 0.0015 32.8 11.1 119 54-236 60-182 (195)
188 COG2813 RsmC 16S RNA G1207 met 66.0 18 0.0004 39.5 7.3 73 566-649 161-233 (300)
189 PF07021 MetW: Methionine bios 65.6 11 0.00024 38.8 5.2 76 554-645 4-80 (193)
190 TIGR00601 rad23 UV excision re 65.3 8 0.00017 43.4 4.6 39 137-177 156-194 (378)
191 PRK13699 putative methylase; P 64.4 9.7 0.00021 39.5 4.7 42 563-607 163-204 (227)
192 PRK15068 tRNA mo(5)U34 methylt 64.3 17 0.00037 39.6 6.7 36 564-601 123-158 (322)
193 PLN02366 spermidine synthase 63.2 16 0.00036 39.7 6.4 80 562-648 90-173 (308)
194 KOG1270 Methyltransferases [Co 63.1 12 0.00026 40.4 5.2 41 564-607 90-130 (282)
195 PTZ00146 fibrillarin; Provisio 62.8 20 0.00044 39.0 6.9 80 561-648 130-210 (293)
196 COG3963 Phospholipid N-methylt 62.3 20 0.00043 36.7 6.2 85 562-656 47-133 (194)
197 TIGR00740 methyltransferase, p 61.2 24 0.00051 36.0 6.8 80 562-651 52-133 (239)
198 PLN02476 O-methyltransferase 60.9 24 0.00053 38.0 7.0 93 551-649 107-203 (278)
199 PRK11524 putative methyltransf 60.8 11 0.00023 40.1 4.4 41 563-606 208-248 (284)
200 PRK11088 rrmA 23S rRNA methylt 60.1 18 0.00038 38.0 5.8 70 564-646 86-157 (272)
201 COG2242 CobL Precorrin-6B meth 59.9 31 0.00068 35.4 7.2 56 554-612 27-82 (187)
202 PF07223 DUF1421: Protein of u 59.8 6.6 0.00014 43.8 2.6 26 53-78 323-351 (358)
203 PRK14603 ruvA Holliday junctio 58.5 21 0.00045 36.6 5.8 39 137-175 152-193 (197)
204 TIGR01444 fkbM_fam methyltrans 58.2 21 0.00045 32.9 5.3 44 566-610 1-44 (143)
205 smart00828 PKS_MT Methyltransf 58.2 27 0.00058 34.9 6.5 43 566-609 2-44 (224)
206 TIGR02081 metW methionine bios 57.7 12 0.00027 36.9 4.0 47 557-605 7-53 (194)
207 TIGR00452 methyltransferase, p 57.2 35 0.00075 37.3 7.6 36 564-601 122-157 (314)
208 PF05724 TPMT: Thiopurine S-me 55.7 14 0.0003 38.2 4.1 39 563-604 37-75 (218)
209 PRK14606 ruvA Holliday junctio 55.4 21 0.00045 36.4 5.2 39 137-175 143-182 (188)
210 PF02536 mTERF: mTERF; InterP 54.9 27 0.00058 37.4 6.2 23 211-233 245-267 (345)
211 PRK00050 16S rRNA m(4)C1402 me 53.9 25 0.00054 38.3 5.8 77 564-646 20-96 (296)
212 TIGR00084 ruvA Holliday juncti 53.4 25 0.00053 35.9 5.3 39 137-175 147-187 (191)
213 PRK04457 spermidine synthase; 53.0 22 0.00048 37.5 5.2 76 563-646 66-142 (262)
214 PRK11705 cyclopropane fatty ac 52.6 29 0.00063 38.8 6.2 41 563-606 167-208 (383)
215 PRK14602 ruvA Holliday junctio 52.2 28 0.00061 35.8 5.6 39 137-175 155-196 (203)
216 COG0293 FtsJ 23S rRNA methylas 51.7 30 0.00066 35.9 5.7 71 561-645 43-116 (205)
217 KOG1975 mRNA cap methyltransfe 51.6 7.3 0.00016 43.2 1.3 120 525-651 79-207 (389)
218 KOG0820 Ribosomal RNA adenine 50.6 41 0.0009 36.8 6.6 83 558-653 53-136 (315)
219 KOG1663 O-methyltransferase [S 49.0 43 0.00093 35.6 6.3 95 565-694 77-175 (237)
220 PRK14136 recX recombination re 48.5 59 0.0013 35.8 7.5 78 51-164 228-305 (309)
221 PF02536 mTERF: mTERF; InterP 48.3 25 0.00054 37.6 4.7 25 137-161 243-267 (345)
222 PRK14605 ruvA Holliday junctio 48.1 33 0.00072 35.0 5.3 39 137-175 148-188 (194)
223 PLN03196 MOC1-like protein; Pr 47.8 71 0.0015 37.1 8.5 24 53-76 126-149 (487)
224 PLN03075 nicotianamine synthas 47.6 94 0.002 34.0 8.9 76 563-646 123-201 (296)
225 PLN02336 phosphoethanolamine N 47.0 40 0.00087 38.1 6.3 41 563-606 266-307 (475)
226 PF02353 CMAS: Mycolic acid cy 46.4 45 0.00098 35.6 6.2 45 562-609 61-106 (273)
227 PRK14601 ruvA Holliday junctio 46.3 36 0.00077 34.7 5.2 36 137-173 142-177 (183)
228 PRK01581 speE spermidine synth 46.0 84 0.0018 35.5 8.4 80 562-649 149-235 (374)
229 PRK14121 tRNA (guanine-N(7)-)- 46.0 39 0.00085 38.2 5.9 82 563-651 122-203 (390)
230 COG2521 Predicted archaeal met 45.9 12 0.00026 40.1 1.8 100 563-691 134-237 (287)
231 TIGR03438 probable methyltrans 45.4 51 0.0011 35.3 6.5 87 562-654 62-152 (301)
232 PF02631 RecX: RecX family; I 44.9 48 0.001 30.6 5.5 73 51-160 45-118 (121)
233 COG3897 Predicted methyltransf 44.8 20 0.00043 37.4 3.1 78 563-654 79-156 (218)
234 PF07223 DUF1421: Protein of u 44.5 20 0.00044 40.1 3.3 28 137-164 321-348 (358)
235 PRK14600 ruvA Holliday junctio 42.7 26 0.00057 35.6 3.6 35 211-245 147-181 (186)
236 KOG4169 15-hydroxyprostaglandi 41.7 35 0.00076 36.5 4.4 72 572-648 12-91 (261)
237 KOG0011 Nucleotide excision re 41.6 1.5E+02 0.0033 33.1 9.3 98 64-177 235-336 (340)
238 KOG1499 Protein arginine N-met 41.3 31 0.00067 38.5 4.1 40 560-602 58-97 (346)
239 PLN02490 MPBQ/MSBQ methyltrans 40.5 50 0.0011 36.6 5.6 72 563-647 113-185 (340)
240 COG1867 TRM1 N2,N2-dimethylgua 39.2 60 0.0013 36.7 5.9 43 564-609 53-97 (380)
241 KOG1500 Protein arginine N-met 39.1 54 0.0012 36.9 5.5 52 549-603 162-215 (517)
242 COG2230 Cfa Cyclopropane fatty 38.8 76 0.0016 34.6 6.5 64 562-628 71-136 (283)
243 PRK14604 ruvA Holliday junctio 38.2 56 0.0012 33.5 5.2 39 137-175 149-189 (195)
244 PF03216 Rhabdo_ncap_2: Rhabdo 36.6 35 0.00076 37.3 3.5 67 54-157 32-98 (357)
245 KOG1271 Methyltransferases [Ge 35.8 64 0.0014 33.7 5.0 71 566-646 70-142 (227)
246 PRK11760 putative 23S rRNA C24 34.6 69 0.0015 36.0 5.5 38 561-601 209-246 (357)
247 PF05401 NodS: Nodulation prot 34.5 59 0.0013 33.8 4.7 68 565-646 45-112 (201)
248 KOG2198 tRNA cytosine-5-methyl 34.4 80 0.0017 35.7 6.0 128 515-655 120-251 (375)
249 COG0421 SpeE Spermidine syntha 33.0 49 0.0011 35.8 4.0 88 548-646 63-155 (282)
250 PRK14603 ruvA Holliday junctio 32.9 49 0.0011 33.9 3.8 33 211-243 154-189 (197)
251 PF01564 Spermine_synth: Sperm 32.3 68 0.0015 33.7 4.8 78 563-649 76-159 (246)
252 PRK00116 ruvA Holliday junctio 31.9 83 0.0018 31.9 5.2 38 137-174 149-187 (192)
253 PRK14137 recX recombination re 31.1 1.9E+02 0.0042 29.7 7.7 78 52-164 105-182 (195)
254 KOG2689 Predicted ubiquitin re 31.1 39 0.00085 36.7 2.8 33 56-88 5-37 (290)
255 PRK14606 ruvA Holliday junctio 30.7 50 0.0011 33.7 3.4 33 211-243 145-178 (188)
256 PF04695 Pex14_N: Peroxisomal 30.7 77 0.0017 30.5 4.5 29 137-165 23-51 (136)
257 PRK14602 ruvA Holliday junctio 30.7 56 0.0012 33.6 3.8 34 211-244 157-193 (203)
258 COG0863 DNA modification methy 30.1 1.1E+02 0.0023 31.9 5.8 45 562-609 221-265 (302)
259 KOG2078 tRNA modification enzy 29.7 43 0.00092 38.6 2.9 45 560-607 246-290 (495)
260 COG0632 RuvA Holliday junction 28.9 62 0.0014 33.5 3.8 34 140-173 159-195 (201)
261 PF10440 WIYLD: Ubiquitin-bind 28.9 96 0.0021 27.0 4.3 39 54-92 14-63 (65)
262 PRK14605 ruvA Holliday junctio 28.8 60 0.0013 33.2 3.6 33 212-244 151-185 (194)
263 PRK00116 ruvA Holliday junctio 27.5 87 0.0019 31.8 4.5 38 52-89 150-189 (192)
264 TIGR01283 nifE nitrogenase mol 27.3 1.9E+02 0.0041 33.0 7.6 69 577-654 341-409 (456)
265 COG1189 Predicted rRNA methyla 27.2 85 0.0018 33.6 4.4 65 561-632 77-142 (245)
266 cd01968 Nitrogenase_NifE_I Nit 27.0 1.6E+02 0.0035 32.9 6.9 128 513-651 221-367 (410)
267 PF10294 Methyltransf_16: Puta 26.6 2E+02 0.0044 28.3 6.8 44 563-609 45-89 (173)
268 PF07553 Lipoprotein_Ltp: Host 25.3 69 0.0015 26.1 2.7 19 215-233 27-48 (48)
269 PLN02823 spermine synthase 25.2 1.7E+02 0.0037 32.4 6.6 78 563-648 103-184 (336)
270 KOG0418 Ubiquitin-protein liga 24.6 60 0.0013 33.6 2.7 28 137-164 162-189 (200)
271 KOG0418 Ubiquitin-protein liga 24.3 55 0.0012 33.8 2.3 26 52-77 163-188 (200)
272 COG0632 RuvA Holliday junction 24.2 69 0.0015 33.2 3.1 32 213-244 160-194 (201)
273 COG3778 Uncharacterized protei 24.1 88 0.0019 32.2 3.7 55 513-598 57-116 (188)
274 PRK14478 nitrogenase molybdenu 23.4 2.7E+02 0.0059 32.1 8.0 67 576-651 338-404 (475)
275 PF05219 DREV: DREV methyltran 23.3 1.6E+02 0.0035 32.0 5.7 40 563-605 94-133 (265)
276 PF02845 CUE: CUE domain; Int 23.3 1.6E+02 0.0035 22.6 4.2 29 62-91 14-42 (42)
277 cd01971 Nitrogenase_VnfN_like 23.2 2.8E+02 0.006 31.4 7.9 36 513-548 223-261 (427)
278 KOG0011 Nucleotide excision re 22.8 75 0.0016 35.4 3.2 36 54-90 138-173 (340)
279 COG3243 PhaC Poly(3-hydroxyalk 22.8 23 0.00049 40.6 -0.7 74 370-451 332-412 (445)
280 PF08587 UBA_2: Ubiquitin asso 21.4 26 0.00057 28.5 -0.4 21 140-160 5-26 (46)
281 COG1743 Adenine-specific DNA m 21.2 1.1E+02 0.0024 37.8 4.4 48 558-609 86-133 (875)
282 TIGR00084 ruvA Holliday juncti 20.6 1.5E+02 0.0032 30.3 4.6 39 51-89 147-188 (191)
283 PRK13901 ruvA Holliday junctio 20.3 1E+02 0.0022 31.9 3.4 26 137-162 144-169 (196)
284 KOG1122 tRNA and rRNA cytosine 20.0 1.9E+02 0.0042 33.5 5.7 83 563-655 241-327 (460)
285 KOG2187 tRNA uracil-5-methyltr 20.0 51 0.0011 38.7 1.3 60 542-604 358-421 (534)
No 1
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.5e-24 Score=224.65 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=94.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
..+++|||||||||+++||+++|| ++++++|||+.+++||+.++ +...++..||.++..+.+... ++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~~~-----~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALRKS-----DVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcccc-----CCC
Confidence 358999999999999999999997 67999999999999998754 324466799999998877532 799
Q ss_pred EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
+|+||||||+||.+|+ |.|++|+|++||++|+|+|+.+||.
T Consensus 70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~ 110 (328)
T COG0270 70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK 110 (328)
T ss_pred EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence 9999999999999754 4689999999999999999999984
No 2
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.89 E-value=7.2e-24 Score=217.32 Aligned_cols=105 Identities=22% Similarity=0.396 Sum_probs=87.2
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 644 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV 644 (697)
||+|||||||||+++||+++|| ++++|+|+|+.|+++|+.+|. .+..+||++++.+.|+. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5899999999999999999996 679999999999999998764 36689999999886642 59999
Q ss_pred EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
+||||||+||.+|+ +.|++|+|+.||++|+|+|+.+||..
T Consensus 66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~ 105 (335)
T PF00145_consen 66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY 105 (335)
T ss_dssp EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence 99999999999865 35788999999999999999999864
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.87 E-value=2.9e-22 Score=221.99 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=98.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH--------Hh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL 634 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~--------~l 634 (697)
.++++|||||||||+++||+++|+ ++|+++|+|+.|++||+.+|.. .+..++..+||++++...+. ..
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence 368999999999999999999998 5799999999999999987632 23345567899999854321 11
Q ss_pred h-hccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCC-CCccchHHHHHHHHHHhcccc
Q 005421 635 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 635 ~-~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~-D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
+ ...+++|||+||||||+||.+|+.++ ...|.+.|+. |+|++||++|+|+|+++||.+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~----~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~ 222 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGVSKK----NSLGRAHGFECETQGTLFFDVARIIDAKRPAI 222 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhccccc----ccccccccccCCccccHHHHHHHHHHHhCCCE
Confidence 1 13468999999999999999875321 1124445764 799999999999999999864
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.84 E-value=2.4e-21 Score=201.08 Aligned_cols=106 Identities=19% Similarity=0.369 Sum_probs=91.5
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 644 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV 644 (697)
++++||||||||+++||+++|+ ++++++|+|+.|+++|+.+|. .. ++.+||++++...+ .+++|+|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc------CCCCCEE
Confidence 5799999999999999999997 569999999999999988653 22 56799999987543 3679999
Q ss_pred EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
+||||||+||.+|+ +.|.+|+|+.||++|+|+|+.+||.+
T Consensus 67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~ 106 (275)
T cd00315 67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY 106 (275)
T ss_pred EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence 99999999999865 34778999999999999999999864
No 5
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=2.6e-21 Score=204.43 Aligned_cols=103 Identities=17% Similarity=0.361 Sum_probs=88.6
Q ss_pred ccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 005421 567 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 646 (697)
Q Consensus 567 vLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIG 646 (697)
||||||||||+++||+++|| ++++++|+|+.|+.+|+.+| ++ .++.+||++++..++ +++|||+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 68999999999999999997 56999999999999998754 33 355789999986543 47999999
Q ss_pred cCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 647 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 647 GpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
|||||+||.+|+ +.|++|+|+.||++|+|+|+.+||.+
T Consensus 66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 999999998754 35778999999999999999999864
No 6
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.12 E-value=5e-11 Score=124.28 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=110.3
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhcccccc-c---cCCCCCCc--CCCCCCC
Q 005421 368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP 432 (697)
Q Consensus 368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~-h---NLP~~~R~--~~~p~~p 432 (697)
.+|++|++|||..+-. ..+..|.+.| |.+.+.++|+..| .||.|+|.|+ . .++...-. |-.+.++
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999999865 4566776666 6789999999999 7889999995 2 22222111 1122346
Q ss_pred CccccccCCCCCCCCCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeeecCcccCCCC
Q 005421 433 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD 512 (697)
Q Consensus 433 ~ti~d~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple 512 (697)
.|+.|+| ++..|+. -..|+++.... ... .+... ..-+|..+...+.|+
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT 229 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT 229 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence 8999999 5667776 45677766421 000 10000 001145677899999
Q ss_pred cchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421 513 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 557 (697)
Q Consensus 513 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL 557 (697)
+.|+.||+|||++|+-.++ +.+.++|.+||+..+.....+...+
T Consensus 230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i 273 (275)
T cd00315 230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI 273 (275)
T ss_pred HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence 9999999999999987543 8999999999999888777665433
No 7
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=98.95 E-value=1.1e-09 Score=112.79 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=94.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+++|++|+||+||+-.+|+.+-|+-.+|.|+|++..|-.+|+. |..+.++-..||+.|+.+++..+ .+++
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~m 72 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QANM 72 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccce
Confidence 5889999999999999999999999999999999999999864 44456667789999999888655 6899
Q ss_pred EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
+.=.||||+|...+ .+..+.|+|++-|.+.+.++-+++..
T Consensus 73 ~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L 112 (338)
T KOG0919|consen 73 LLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL 112 (338)
T ss_pred EeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence 99999999999653 34568999999999999998877643
No 8
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.31 E-value=4e-07 Score=102.30 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=46.0
Q ss_pred CcccCCCCcchhhHHhcCC--CCCcccCCCChHHHHHhhhhhhccccchhhhcccccc
Q 005421 505 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM 560 (697)
Q Consensus 505 ~~~~~ple~~E~E~i~GfP--~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~ 560 (697)
.++++.|+|.|+-||+||| ..++=...++.++.||.+||+..|+++..++..|+.+
T Consensus 398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~ 455 (467)
T PRK10458 398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPK 455 (467)
T ss_pred cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 3578999999999999995 4333224789999999999999999999888777654
No 9
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.16 E-value=2.8e-07 Score=95.06 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=40.9
Q ss_pred eecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421 502 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 557 (697)
Q Consensus 502 W~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL 557 (697)
++.+.+.+.|++.|+.||+|||++|+- ..+.+++++.+||+.-+....++...|
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i 333 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAI 333 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHh
Confidence 456789999999999999999999986 555669999999999887777665544
No 10
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.68 E-value=9.7e-05 Score=65.82 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
|.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|+.++.. . ...+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence 4689999999999999999999 2 45789999999999888876654221 22345677765531 0 1237899
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|++-||.-+..
T Consensus 73 ~Iv~npP~~~~~ 84 (117)
T PF13659_consen 73 LIVTNPPYGPRS 84 (117)
T ss_dssp EEEE--STTSBT
T ss_pred EEEECCCCcccc
Confidence 999999986543
No 11
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=7.8e-06 Score=87.31 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=94.1
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccccCC---CCCCcCCCCC----
Q 005421 367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE---- 430 (697)
Q Consensus 367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~hNLP---~~~R~~~~p~---- 430 (697)
..+|.||++|||..+-. ..+..|-+-| |.+...++||..| .||+|+|.|+--.- ....+ ..|.
T Consensus 98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~ 176 (315)
T TIGR00675 98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV 176 (315)
T ss_pred hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence 45799999999987643 4566665555 6778899999999 99999999876322 11111 1233
Q ss_pred -CCCccccccCCCC----CCCCCcCcccccceeecc-------------CcchhHHHHHHHHHHhhhcCCCchhhhhHHH
Q 005421 431 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSG-------------TSGISQLCERFEKLLRDSRGVLSSQQQRDIL 492 (697)
Q Consensus 431 -~p~ti~d~lp~~~----~~wp~wd~r~kl~ci~t~-------------~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl 492 (697)
...||.|++.... .|+++....+.+..+... ...........+++..+.... ......+.
T Consensus 177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~ 254 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL 254 (315)
T ss_pred ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence 2567888774321 111111000000000000 000000000000111100000 00000000
Q ss_pred HhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccc
Q 005421 493 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTL 550 (697)
Q Consensus 493 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti 550 (697)
..+. .+.. .-+.+.+.|++.|.-||+|||++|. |..+.+..+|.+||+.-+...
T Consensus 255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la 308 (315)
T TIGR00675 255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVI 308 (315)
T ss_pred eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHH
Confidence 0011 0111 2356778999999999999999996 458999999999999865443
No 12
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.32 E-value=0.00019 Score=74.48 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.++|||+||.|.+.+.+.+. |. .|+++|+++.+.+..+.+....+ ..+..+|+.+.-.+. ..+.|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~------~~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA------LRGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh------cCCCE
Confidence 458999999999999988754 33 36899999999988887654321 224567765422111 12579
Q ss_pred cEEEecCCCCcccc
Q 005421 642 DFVICQNSVPQIPN 655 (697)
Q Consensus 642 DLVIGGpPCQ~FS~ 655 (697)
|+|+.-|||.+.+.
T Consensus 155 DlVv~NPPy~~~~~ 168 (251)
T TIGR03704 155 DILAANAPYVPTDA 168 (251)
T ss_pred eEEEECCCCCCchh
Confidence 99999999998654
No 13
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00017 Score=77.55 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=96.4
Q ss_pred cCCCCccccccccccchh---hHHHHhhhhc----cCCceeecccc-cchhhccccccc-----cCCCCCCcCCCCC---
Q 005421 367 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE--- 430 (697)
Q Consensus 367 ~~~ppfF~feNV~~~~~~---~w~~Is~fL~----~i~Pe~Vds~~-fsaa~R~Rgy~h-----NLP~~~R~~~~p~--- 430 (697)
..+|.||++|||..|-.. .|+.|.+-|. .+...++||++ --||+|.|-|+. |+-....-. .+.
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~ 184 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG 184 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence 456799999999999886 8888888774 45566777765 478999999999 776664311 111
Q ss_pred CCCcccccc-----CCCCCCCC-CcCcccccceeeccCcchhHHHHHHHHH--------Hhhhc----------CCCchh
Q 005421 431 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------LRDSR----------GVLSSQ 486 (697)
Q Consensus 431 ~p~ti~d~l-----p~~~~~wp-~wd~r~kl~ci~t~~~~~~~l~~ri~~~--------~~~~~----------~~~~~~ 486 (697)
...++.+++ +.+..-|. .+...-+.+-+... ...++... ..... .-+...
T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t 258 (328)
T COG0270 185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT 258 (328)
T ss_pred cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence 022222211 11111000 00000000000000 00000000 00000 000000
Q ss_pred hhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421 487 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 558 (697)
Q Consensus 487 ~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK 558 (697)
+ . ...+-.=+-+..-+.|++.|+-+|+|||+.|.=.+ +.+..++.+||+.-+....++..-+.
T Consensus 259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~ 321 (328)
T COG0270 259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAIL 321 (328)
T ss_pred e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHH
Confidence 0 0 11111122355666799999999999999998765 99999999999888777766654443
No 14
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.13 E-value=0.00059 Score=68.05 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=57.4
Q ss_pred ChHHHHH-hhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421 533 SLTARLE-SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 611 (697)
Q Consensus 533 s~teR~k-~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~ 611 (697)
.-++|+| +|-|..+.. --.+.+|||||||.|.+.+=.-.-|. +.|+.||.++.+.++++.+....
T Consensus 23 PT~drvrealFniL~~~------------~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l 88 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR------------NLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKL 88 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-------------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhccc------------ccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHh
Confidence 3457887 675555432 02468899999999987654445576 45899999999999999988765
Q ss_pred CCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421 612 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 649 (697)
Q Consensus 612 n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP 649 (697)
+... ..++..|... .+..+......||||.--||
T Consensus 89 ~~~~~~~v~~~d~~~----~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 89 GLEDKIRVIKGDAFK----FLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp T-GGGEEEEESSHHH----HHHHHHHCTS-EEEEEE--S
T ss_pred CCCcceeeeccCHHH----HHHhhcccCCCceEEEECCC
Confidence 4222 1122333221 12222223468999999998
No 15
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.96 E-value=0.002 Score=64.37 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=55.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+-+|||||||.|.+.+.+-..|-. .|++||+++.+.++++.++...+... ..++.+|+.+. +..+......+|
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~d 123 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFDN 123 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCce
Confidence 567999999999999998888863 58999999999999998876543221 12344555321 111111112378
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+=-||=.
T Consensus 124 vv~~DPPy~ 132 (189)
T TIGR00095 124 VIYLDPPFF 132 (189)
T ss_pred EEEECcCCC
Confidence 888888753
No 16
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.86 E-value=0.0013 Score=64.94 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=47.5
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-CCCCccccccccccChhhHHHhhhccCC-ccE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF 643 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-~~g~li~~~DI~~Lt~~~I~~l~~~~g~-~DL 643 (697)
+|||+|||+||=++.|.+.+ ..|+|||+|+......+.+-.-.+ .....++.+|..++-.. + .... +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence 58999999999999999996 458999999998887776433221 00112334554432211 0 1122 799
Q ss_pred EEecCCCCccccC
Q 005421 644 VICQNSVPQIPNS 656 (697)
Q Consensus 644 VIGGpPCQ~FS~a 656 (697)
|+..||=-+.+..
T Consensus 73 vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 73 VFLSPPWGGPSYS 85 (163)
T ss_dssp EEE---BSSGGGG
T ss_pred EEECCCCCCcccc
Confidence 9999998887664
No 17
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.82 E-value=0.0025 Score=64.76 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=48.5
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+..+=+|+|+|||+|.+++-+-+.+ +.+.|+|+|+++.|..-++.+-...+-.+.+ ++.+|.+++.. .+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~ 168 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG 168 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence 4557789999999999999887733 2256899999999999888765432222222 34567665543 24
Q ss_pred CccEEEecCCCC
Q 005421 640 SIDFVICQNSVP 651 (697)
Q Consensus 640 ~~DLVIGGpPCQ 651 (697)
.+|-|+-|.|=.
T Consensus 169 ~~drvim~lp~~ 180 (200)
T PF02475_consen 169 KFDRVIMNLPES 180 (200)
T ss_dssp -EEEEEE--TSS
T ss_pred ccCEEEECChHH
Confidence 689888888743
No 18
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.78 E-value=0.003 Score=70.05 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+-+|||||||.||+++..-..|. ..|++||+++.+....+.++..++.. ...++.+|+.+.- ..+...-+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence 357899999999999887666664 35889999999999888877643321 1224556775432 222112347
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
||+||--||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 19
>PHA03412 putative methyltransferase; Provisional
Probab=96.74 E-value=0.0019 Score=67.42 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=78.7
Q ss_pred CCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcC--C
Q 005421 509 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I 586 (697)
Q Consensus 509 ~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aG--f 586 (697)
++|+-+|.|-++ .||+-. ...-.+.+|-.|....+++++... . . .+.+||||.||.|.+.+.+-+.- -
T Consensus 5 ~~~~~~~~~f~~---~n~~~~----~~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~ 74 (241)
T PHA03412 5 KALTYEEKLFII---ENFHEG----AFTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA 74 (241)
T ss_pred ccccHHHHHHHH---hhcccc----cccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence 356666666665 466652 222335567788888887776432 1 2 36799999999999998876531 1
Q ss_pred ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCccc
Q 005421 587 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 654 (697)
Q Consensus 587 ~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS 654 (697)
+...|.+||||+.+.+..+.+ .....++..|+..... .+.||+||+=||=-...
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n-----~~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRI-----VPEATWINADALTTEF---------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhh-----ccCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence 112578999999998877643 2223355677754321 14799999999865533
No 20
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.71 E-value=0.0046 Score=62.56 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=51.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||||||.|.+.+.+-..|. ..|++||+++.+.+..+.+....+.....++.+|+.+. +. ...+.+|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence 45899999999999985433343 35789999999999998877654322222344555321 11 11246999
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+--||
T Consensus 125 V~~DPP 130 (199)
T PRK10909 125 VFVDPP 130 (199)
T ss_pred EEECCC
Confidence 999999
No 21
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.0028 Score=69.29 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=80.5
Q ss_pred hhhHHhcCCCCCccc------CCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCce
Q 005421 515 HIELILGYPSNHTQA------AGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL 588 (697)
Q Consensus 515 E~E~i~GfP~~~Tr~------~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~ 588 (697)
++|.|-|=++-.|-- |-++.++- .|+.-....+..+++..++ |-+|+|+|||+|-+++-.-+.|-.
T Consensus 141 ~le~laGe~~teTihrE~G~~f~vD~~Kv------~Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~- 212 (341)
T COG2520 141 RLEVLAGERRTETIHRENGCRFKVDVAKV------YFSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP- 212 (341)
T ss_pred ceEEeecCCCceEEEecCCEEEEEchHHe------EECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-
Confidence 367777777555532 22333332 3666666677777777666 888999999999999999999953
Q ss_pred eeEEEeeCCHHHHHHHHHHHhhcCCC-C-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421 589 KGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 589 k~VvaVEid~~ar~t~~~~~~~~n~~-g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC 650 (697)
+ |+|+|||+.+.+-++.+-. .|.- + ...+++|.+.+..+ .+.+|=||=|-|=
T Consensus 213 ~-V~A~diNP~A~~~L~eNi~-LN~v~~~v~~i~gD~rev~~~--------~~~aDrIim~~p~ 266 (341)
T COG2520 213 K-VYAIDINPDAVEYLKENIR-LNKVEGRVEPILGDAREVAPE--------LGVADRIIMGLPK 266 (341)
T ss_pred e-EEEEecCHHHHHHHHHHHH-hcCccceeeEEeccHHHhhhc--------cccCCEEEeCCCC
Confidence 3 8999999999998887653 2322 2 11356777766542 2678877766663
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.64 E-value=0.0046 Score=58.39 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||-||.|.+...|. +++... -++++|+++.+.+..+......+.....++.+||.++... +. +.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 46899999999999999999 555433 3789999999998888766544333334667899886643 32 589
Q ss_pred cEEEecCCCCcc
Q 005421 642 DFVICQNSVPQI 653 (697)
Q Consensus 642 DLVIGGpPCQ~F 653 (697)
|+|+...++..+
T Consensus 75 D~I~~~~~l~~~ 86 (152)
T PF13847_consen 75 DIIISNGVLHHF 86 (152)
T ss_dssp EEEEEESTGGGT
T ss_pred eEEEEcCchhhc
Confidence 999998887444
No 23
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.61 E-value=0.0039 Score=46.80 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 174 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I 174 (697)
..+++..|+.|||+++.+..|+..||-+ ++.=++||
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence 4578999999999999999999999985 67777765
No 24
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.45 E-value=0.0052 Score=45.62 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421 139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 175 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~ 175 (697)
++++.|+.|||+++.+..|+..||-+ ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence 57899999999999999999999986 576677763
No 25
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.41 E-value=0.017 Score=62.00 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=57.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.++||+|||.|++.+.+...|. .++++|+|+...+..+.+....+.....+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 3467899999999999877777775 3689999998776666554433222223456777766421 2479
Q ss_pred cEEEecCCCCccc
Q 005421 642 DFVICQNSVPQIP 654 (697)
Q Consensus 642 DLVIGGpPCQ~FS 654 (697)
|+|+.-|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999986544
No 26
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.29 E-value=0.0097 Score=62.14 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=56.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||++||.||.++.+..+--+--.|+++|+++...+.++.+....+.....+...|...+.. ..+.||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence 457899999999999988755311111489999999988888776554322211233445443321 225699
Q ss_pred EEEecCCCCcccc
Q 005421 643 FVICQNSVPQIPN 655 (697)
Q Consensus 643 LVIGGpPCQ~FS~ 655 (697)
+|+--+||.+...
T Consensus 143 ~Vl~D~Pcsg~G~ 155 (264)
T TIGR00446 143 AILLDAPCSGEGV 155 (264)
T ss_pred EEEEcCCCCCCcc
Confidence 9999999986654
No 27
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.29 E-value=0.006 Score=66.94 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||||||+|.+++.+...|- .|++||+++.+.+..+.+....+-....+..+|+.+.... ..+.+|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence 35799999999999998887763 4799999999999888776543221122445566443211 1145899
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+-=||
T Consensus 304 vi~DPP 309 (374)
T TIGR02085 304 VLVNPP 309 (374)
T ss_pred EEECCC
Confidence 999998
No 28
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.28 E-value=0.0095 Score=44.40 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421 139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 175 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~ 175 (697)
++++.|+.|||+++.+..|+..|+-+ ++.-+++|+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 57899999999999999999999985 677778875
No 29
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.26 E-value=0.0084 Score=64.07 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||||||.|.+++.+.+.|- .|+++|+++.+.+..+.+....+-....++.+|+.++... ..+.+|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence 46899999999999999998774 4789999999988877655433221122445666543210 1246899
Q ss_pred EEecCCCCcc
Q 005421 644 VICQNSVPQI 653 (697)
Q Consensus 644 VIGGpPCQ~F 653 (697)
|+--||+.+.
T Consensus 244 Vv~dPPr~G~ 253 (315)
T PRK03522 244 VLVNPPRRGI 253 (315)
T ss_pred EEECCCCCCc
Confidence 9999997764
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.25 E-value=0.013 Score=57.00 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
..-++|||-||.|-+++.+.+.+-.. .|.++|+++.+....+.++...+-....+...|+.+-- ..+.+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence 45679999999999999999988654 48899999999999988776542221223344443211 136899
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+.-||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 31
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.022 Score=57.63 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=62.7
Q ss_pred ChHHHHH-hhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421 533 SLTARLE-SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 611 (697)
Q Consensus 533 s~teR~k-~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~ 611 (697)
.-++|.| +|-|.++.+ ++ .+-++||||||-|++.+=.-.-|. ..++.||.|..+..+++.+-...
T Consensus 24 PT~drVREalFNil~~~-----------~i-~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l 89 (187)
T COG0742 24 PTTDRVREALFNILAPD-----------EI-EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL 89 (187)
T ss_pred CCchHHHHHHHHhcccc-----------cc-CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh
Confidence 4568887 775555442 23 467799999999987433334465 45789999999999999876544
Q ss_pred CCCC-CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421 612 GQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 612 n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
+..+ ..++..|.. .-+. .......||+|.==||=+
T Consensus 90 ~~~~~~~~~~~da~----~~L~-~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 90 GLEGEARVLRNDAL----RALK-QLGTREPFDLVFLDPPYA 125 (187)
T ss_pred CCccceEEEeecHH----HHHH-hcCCCCcccEEEeCCCCc
Confidence 3212 122333332 1111 112223599999999976
No 32
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.19 E-value=0.014 Score=59.95 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+.. ..+.||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence 4578999999999999988876522 357899999999888877654111112223445552211 125799
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+.-||+-+.+
T Consensus 178 ~Iv~npPy~~~~ 189 (275)
T PRK09328 178 LIVSNPPYIPEA 189 (275)
T ss_pred EEEECCCcCCcc
Confidence 999999997654
No 33
>PHA03411 putative methyltransferase; Provisional
Probab=96.15 E-value=0.0092 Score=63.68 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=64.2
Q ss_pred hhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccc
Q 005421 542 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE 621 (697)
Q Consensus 542 gnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~ 621 (697)
|-.|..+.+.++| ++... .+-+||||+||+|.+.+.+....-. ..|++||+++.+.+..+.. .+...++.+
T Consensus 46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n-----~~~v~~v~~ 116 (279)
T PHA03411 46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRL-----LPEAEWITS 116 (279)
T ss_pred eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHh-----CcCCEEEEC
Confidence 5567778888887 33332 2358999999999998777543211 2478999999988777643 222335567
Q ss_pred cccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421 622 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 655 (697)
Q Consensus 622 DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~ 655 (697)
|+.++.. .+.||+|++-||-.....
T Consensus 117 D~~e~~~---------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 117 DVFEFES---------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred chhhhcc---------cCCCcEEEEcCCccccCc
Confidence 7765421 147999999999876543
No 34
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.88 E-value=0.02 Score=63.51 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||||||.|.+++.|.+.+- .|+++|+++.+.+..+.+....+.....++.+|+.++ +..+....+.+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence 346899999999999999988763 4799999999988887765433222223455666542 111111124589
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
+|+--||.-+
T Consensus 365 ~vi~dPPr~G 374 (431)
T TIGR00479 365 VLLLDPPRKG 374 (431)
T ss_pred EEEECcCCCC
Confidence 9999999765
No 35
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.86 E-value=0.019 Score=55.48 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-++||++||.|.++..+.+.+- .++++|+|+.+...++..+... ....++.+|+.++... ...+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence 345899999999999998888763 4789999999988888765421 1223556777766421 12589
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+|.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999998865
No 36
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.83 E-value=0.018 Score=64.50 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||++||.||.++.+.++ +- -..|+++|+++.....++.+....+.....++.+|..++.. .+.|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f 319 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP 319 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence 3568999999999998766542 21 12489999999988888776654332212234566655431 1469
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|+|+-.+||.+....
T Consensus 320 D~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 320 DAILLDAPCTGTGVL 334 (445)
T ss_pred CEEEEcCCCCCcchh
Confidence 999999999887654
No 37
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.76 E-value=0.032 Score=54.29 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-++|||.||.|.+++.+.+.|. .|+++|+++...+..+.+.... +....+..+|+.+.. .+.+|+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~ 85 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV 85 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence 35799999999999999999885 4789999999888777654322 222223345554321 247999
Q ss_pred EEecCCCCcccc
Q 005421 644 VICQNSVPQIPN 655 (697)
Q Consensus 644 VIGGpPCQ~FS~ 655 (697)
|+..+|+.....
T Consensus 86 Vi~n~p~~~~~~ 97 (179)
T TIGR00537 86 ILFNPPYLPLED 97 (179)
T ss_pred EEECCCCCCCcc
Confidence 999999986653
No 38
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.70 E-value=0.024 Score=63.15 Aligned_cols=85 Identities=12% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||+||.||.++.+.+.+-. ..|+++|+++......+.+....+.. ..++.+|+.++.. +. ..+.||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~~-~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----WW-DGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----hc-ccCCCC
Confidence 3578999999999999888776532 35899999999988888776543322 2345677765421 10 124699
Q ss_pred EEEecCCCCcccc
Q 005421 643 FVICQNSVPQIPN 655 (697)
Q Consensus 643 LVIGGpPCQ~FS~ 655 (697)
+|+-.+||-+...
T Consensus 316 ~Vl~D~Pcs~~G~ 328 (427)
T PRK10901 316 RILLDAPCSATGV 328 (427)
T ss_pred EEEECCCCCcccc
Confidence 9999999987543
No 39
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.55 E-value=0.032 Score=66.15 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=57.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+-+|||||||.||+++.+.+.|.. .|++||+++.+....+.+...++.. ...++.+|+.+. +.. ..+.|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~f 609 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQF 609 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCCc
Confidence 568999999999999999998863 5899999999999888877543221 122345565432 111 12579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+||-=||+-.
T Consensus 610 DlIilDPP~f~ 620 (702)
T PRK11783 610 DLIFIDPPTFS 620 (702)
T ss_pred CEEEECCCCCC
Confidence 99999999654
No 40
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.48 E-value=0.034 Score=62.17 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=58.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||++||.||.++.+.++ |=. ..|+++|+++......+.+....+.....++.+|+.++.. .+ .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence 3468999999999999887653 111 2478999999988888776654432222345567765431 11 1579
Q ss_pred cEEEecCCCCcccc
Q 005421 642 DFVICQNSVPQIPN 655 (697)
Q Consensus 642 DLVIGGpPCQ~FS~ 655 (697)
|+|+-.+||-++..
T Consensus 322 D~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 322 DKILVDAPCSGLGV 335 (444)
T ss_pred CEEEEcCCCCCCee
Confidence 99999999987654
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.47 E-value=0.032 Score=62.46 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||||||.|.+++.|.+.+ ..|+++|+++.+.+..+.+-...+.....++.+|+.+... .+....+.+|
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD 369 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD 369 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence 35689999999999999998877 3578999999998887765432222222345667654321 1000124699
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+--||+.+.
T Consensus 370 ~Vi~dPPr~g~ 380 (443)
T PRK13168 370 KVLLDPPRAGA 380 (443)
T ss_pred EEEECcCCcCh
Confidence 99999998764
No 42
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.42 E-value=0.052 Score=57.21 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=54.7
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
.++|||+||.|.+.+.+....-. ..|+++|+++.+....+.+....+... ..++.+|+.+- + ....+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~-----~~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L-----AGQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C-----cCCCccE
Confidence 58999999999999888876422 247899999999888877654332211 22334555321 1 0126999
Q ss_pred EEecCCCCccc
Q 005421 644 VICQNSVPQIP 654 (697)
Q Consensus 644 VIGGpPCQ~FS 654 (697)
|+.-||.-+.+
T Consensus 186 IvsNPPyi~~~ 196 (284)
T TIGR00536 186 IVSNPPYIDEE 196 (284)
T ss_pred EEECCCCCCcc
Confidence 99999988764
No 43
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.41 E-value=0.028 Score=61.56 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=53.0
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh--------
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH-------- 636 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~-------- 636 (697)
-++||||||.|++++.+.+.. +.|++||+++.+.+..+.+-...+-....++.+|+.++-.+ +.....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence 469999999999999888764 35899999999998888754322211122456677553211 110000
Q ss_pred -ccCCccEEEecCCC
Q 005421 637 -KLGSIDFVICQNSV 650 (697)
Q Consensus 637 -~~g~~DLVIGGpPC 650 (697)
....+|+|+=-||=
T Consensus 284 ~~~~~~D~v~lDPPR 298 (362)
T PRK05031 284 LKSYNFSTIFVDPPR 298 (362)
T ss_pred ccCCCCCEEEECCCC
Confidence 01148999999993
No 44
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.38 E-value=0.04 Score=45.32 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=51.7
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 645 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI 645 (697)
+++++.||.|++...+-+.+ ...++++|+++.+....+............++.+|+.+... ...+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence 57999999999998888733 24678999999887666532111111122234455554432 1236799999
Q ss_pred ecCCCCcc
Q 005421 646 CQNSVPQI 653 (697)
Q Consensus 646 GGpPCQ~F 653 (697)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99998874
No 45
>PRK14967 putative methyltransferase; Provisional
Probab=95.33 E-value=0.034 Score=56.25 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||++||.|.+.+.+.+.|. ..++++|+++.+....+.+....+ ....++.+|+.+. + ..+.||
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD 103 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD 103 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence 356899999999999998888875 357899999988777666543321 1122344555431 1 125799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+..||-.
T Consensus 104 ~Vi~npPy~ 112 (223)
T PRK14967 104 VVVSNPPYV 112 (223)
T ss_pred EEEECCCCC
Confidence 999988744
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.31 E-value=0.055 Score=57.36 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=55.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.+||||+||.|.+.+.+.+..-.. .|+++|+++.+.+..+.+....+... ..++.+|+.+- + ..+.+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence 4689999999999999998764222 47899999999888877654332111 12344565321 1 113699
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+.-||+-+.+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997654
No 47
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.24 E-value=0.045 Score=58.77 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=54.7
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
.++||+.||.|.+.+.+....-. ..|+++|+++.+....+.+....+... ..++.+|+.+. + ..+.+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------l--~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------L--PGRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------C--CCCCccE
Confidence 58999999999999998776321 357899999999988887654332111 22344555321 1 1136999
Q ss_pred EEecCCCCccc
Q 005421 644 VICQNSVPQIP 654 (697)
Q Consensus 644 VIGGpPCQ~FS 654 (697)
|+.-||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987643
No 48
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.20 E-value=0.047 Score=61.05 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||++||.||.+..+..+.-.--.|+++|+++.....++.+....+.....++.+|.+++.... ....+.||
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD 327 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD 327 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence 35789999999999998877642111247899999988877776654433222234456766553110 00125799
Q ss_pred EEEecCCCCcccc
Q 005421 643 FVICQNSVPQIPN 655 (697)
Q Consensus 643 LVIGGpPCQ~FS~ 655 (697)
.|+-.+||.+...
T Consensus 328 ~Vl~DaPCSg~G~ 340 (434)
T PRK14901 328 RILLDAPCSGLGT 340 (434)
T ss_pred EEEEeCCCCcccc
Confidence 9999999988544
No 49
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.19 E-value=0.023 Score=42.19 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.4
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 88 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL 88 (697)
.++.++.|||+++.+.+|++..|. |.+.-++.|+
T Consensus 4 ~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 4 KIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 478999999999999999999987 6888888874
No 50
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.071 Score=62.38 Aligned_cols=101 Identities=24% Similarity=0.260 Sum_probs=70.8
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 133 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s 133 (697)
++++|+.||||++--.||+=-.|..+++.-...|...=. |.+++|.- . -.++.+.....+
T Consensus 574 ~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMd------------Dpd~~~p~-----v-vp~~~~~a~~~~-- 633 (763)
T KOG0944|consen 574 VISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMD------------DPDIDDPF-----V-VPGNSPKADARE-- 633 (763)
T ss_pred HHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhcc------------CcccCCce-----e-cCCCCCccccCC--
Confidence 899999999999999999999999999988887775321 11122211 1 111111111100
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 134 EGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 134 ~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
...+.+..++.|||++..+.+|+.....+ ++..+|+|++.-
T Consensus 634 --~~e~~v~si~smGf~~~qa~~aL~~~n~n--veravDWif~h~ 674 (763)
T KOG0944|consen 634 --VDEESVASIVSMGFSRNQAIKALKATNNN--VERAVDWIFSHM 674 (763)
T ss_pred --CChhHheeeeeecCcHHHHHHHHHhcCcc--HHHHHHHHHhcc
Confidence 02345788999999999999999986554 899999999774
No 51
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.04 E-value=0.051 Score=54.81 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.++||+.||.|.+.+.+....-. ..++++|+++.+....+.+....+.....++.+|+.+.- ..+.+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence 4568999999999999888876311 257899999999888877654432221224455654311 125799
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+.-||+...+
T Consensus 157 ~Vi~npPy~~~~ 168 (251)
T TIGR03534 157 LIVSNPPYIPEA 168 (251)
T ss_pred EEEECCCCCchh
Confidence 999999988654
No 52
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.97 E-value=0.029 Score=63.22 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+++|||||+|+|++.|-+.. +-|.+||+++.+....+.+=. .|+.. ..++.+|..++..... .-..+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~-~n~i~N~~f~~~~ae~~~~~~~-----~~~~~ 363 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA-ANGIDNVEFIAGDAEEFTPAWW-----EGYKP 363 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH-HcCCCcEEEEeCCHHHHhhhcc-----ccCCC
Confidence 34689999999999999988655 457999999999888776533 23322 2334444444432211 11368
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+==||
T Consensus 364 d~VvvDPP 371 (432)
T COG2265 364 DVVVVDPP 371 (432)
T ss_pred CEEEECCC
Confidence 99988887
No 53
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.95 E-value=0.033 Score=60.83 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.2
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
++||||||+|.+++.|...+ +.|++||+++.+....+.+-.
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH
Confidence 79999999999999997765 458999999998877766543
No 54
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=94.94 E-value=0.037 Score=41.18 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.2
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 88 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL 88 (697)
.++.++.|||+++.|.+|++..+. |.+.-+++|+
T Consensus 4 ~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEMGFSREEARKALRATNN-NVERAVEWLL 37 (38)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHh
Confidence 578999999999999999999998 8998899886
No 55
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.92 E-value=0.092 Score=56.31 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CC-ccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GE-LVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~-li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+-+||+|||=.||+++..-..|- +-|++||.++.+....+.++.-++.. .. .++..|+-+. +.. +.+.+.+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~f 196 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGRF 196 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-E
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCCC
Confidence 56899999999999999989996 45889999999998888877543222 11 2344555432 111 1234789
Q ss_pred cEEEecCCCCccc
Q 005421 642 DFVICQNSVPQIP 654 (697)
Q Consensus 642 DLVIGGpPCQ~FS 654 (697)
|+||-=|| .|+
T Consensus 197 D~IIlDPP--sF~ 207 (286)
T PF10672_consen 197 DLIILDPP--SFA 207 (286)
T ss_dssp EEEEE--S--SEE
T ss_pred CEEEECCC--CCC
Confidence 99999999 665
No 56
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.077 Score=54.11 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|+||=||+|=|++|..-+|- ..|++||+|+.+..+.+.+-.. .-+ ..+...||+++. +.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~ 109 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF 109 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence 456799999999999999999996 4689999999999999876443 112 224456666554 578
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|.||=-||
T Consensus 110 dtvimNPP 117 (198)
T COG2263 110 DTVIMNPP 117 (198)
T ss_pred ceEEECCC
Confidence 98887776
No 57
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.68 E-value=0.076 Score=59.60 Aligned_cols=86 Identities=14% Similarity=0.289 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||++||.||.++.+..+ |-. -.|+++|+++...+.++.+....+.....+...|..++.. .. .+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~~--~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----YV--QDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----hh--hccC
Confidence 3568999999999999877654 111 2479999999998888876654432222234556654421 11 2469
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|.|+-=+||-++...
T Consensus 309 D~Vl~DaPCsg~G~~ 323 (431)
T PRK14903 309 DRILVDAPCTSLGTA 323 (431)
T ss_pred CEEEECCCCCCCccc
Confidence 999999999988654
No 58
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=94.67 E-value=0.023 Score=47.11 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=27.7
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLIE 89 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~ilE~LLt 89 (697)
.++.+|..|||+.+.|..|++..|=. ..+.|||.||.
T Consensus 11 ~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk 55 (55)
T PF09288_consen 11 DLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK 55 (55)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence 48999999999999999999998732 35689999874
No 59
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=94.62 E-value=0.04 Score=41.35 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=28.9
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETL 87 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~L 87 (697)
.+.+++.|||+++.+.+|++..|. |.+.=+++|
T Consensus 5 ~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 578999999999999999999988 888888776
No 60
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.62 E-value=0.063 Score=59.54 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=51.1
Q ss_pred CCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.++||+|||+|.+++-+. ..|. ..|+++|+++.+.+..+.+...++.....+..+|+..+ ....+.+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence 4689999999999998874 4564 45899999999999998876433222222344555332 11124689
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+==||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9987665
No 61
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.61 E-value=0.054 Score=59.23 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=53.8
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK--- 637 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~--l--~~~--- 637 (697)
-++||||||.|.+++.|.+.. +.|++||+++.+....+.+....+-....++.+|+.++-...... + ...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888764 358999999999999888765332112224556765543211000 0 000
Q ss_pred -cCCccEEEecCCC
Q 005421 638 -LGSIDFVICQNSV 650 (697)
Q Consensus 638 -~g~~DLVIGGpPC 650 (697)
...+|+|+=-||=
T Consensus 276 ~~~~~d~v~lDPPR 289 (353)
T TIGR02143 276 KSYNCSTIFVDPPR 289 (353)
T ss_pred ccCCCCEEEECCCC
Confidence 0137999999993
No 62
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.40 E-value=0.043 Score=62.63 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG--------f~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l 634 (697)
.+.+|+|..||.|+|-+++-... +. ..++++|||+.+....+..+...+..+..++..|.-.-+ ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~---~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYV---LLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccc---cccc
Confidence 46799999999999988875322 22 457899999999887766554332111112222211100 0000
Q ss_pred hhccCCccEEEecCCCCcc
Q 005421 635 IHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPCQ~F 653 (697)
....+.||+|||=||=-..
T Consensus 107 ~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred ccccCcccEEEeCCCcccc
Confidence 0123689999999997654
No 63
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=94.39 E-value=0.89 Score=43.87 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
.-|+..+...||+++.|+.||+.. |=-|.....+..+...... . -
T Consensus 29 ~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~-~-~------------------------------ 76 (157)
T PRK00117 29 AELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARK-G-Y------------------------------ 76 (157)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-C-c------------------------------
Confidence 348999999999999999999876 4335557777777665211 0 0
Q ss_pred CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421 129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 208 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~ 208 (697)
. .......|..-||+.+.|..|++++.++. .+++.-++.-....... .+. .
T Consensus 77 -----g--~~~I~~~L~~kGi~~~~I~~~l~~~~~d~--~e~a~~~~~k~~~~~~~-------------------~~~-~ 127 (157)
T PRK00117 77 -----G--PRRIRQELRQKGVDREIIEEALAELDIDW--EELARELARKKFRRPLP-------------------DDA-K 127 (157)
T ss_pred -----h--HHHHHHHHHHcCCCHHHHHHHHHHcCccH--HHHHHHHHHHHcCCCCC-------------------CCH-H
Confidence 0 44567889999999999999999997332 33333333222211100 001 1
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421 209 TMEITL-QLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 209 ~m~k~l-~L~~MGFseeEas~AI~rcG~d 236 (697)
...|+. +|..=||+-+.+..||+....+
T Consensus 128 ~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 128 EKAKLVRFLARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 224665 9999999999999999876554
No 64
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.31 E-value=0.079 Score=55.15 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+-||.|.++..+.+.+. .|+++|+|+.....++..... .....++.+|+.++.- ..+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d 93 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN 93 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence 356899999999999999999874 378999999988887765422 1122355678776542 2468
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+|-+|=+
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 999877744
No 65
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.24 Score=56.71 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=63.8
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 133 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s 133 (697)
+++++++||||.+..+||+--.|..|++.-.+.|...-. |.+.|| +-....+-| +..+
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMd------------DPdlnd------P~~~~~~vP----KkDk 618 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMD------------DPDLND------PFVPPPNVP----KKDK 618 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhcc------------CcccCC------CCCCCCCCC----cccc
Confidence 799999999999999999999999999999999986321 111222 122222222 2222
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 134 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 134 ~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
+ +...++.+|+.|||......+|+-....+
T Consensus 619 e-VdE~~~~Slle~Gln~n~~Rkal~~~n~d 648 (749)
T COG5207 619 E-VDESKARSLLENGLNPNLCRKALMDMNTD 648 (749)
T ss_pred c-ccHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence 2 13457899999999999999998876665
No 66
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=93.72 E-value=0.032 Score=58.74 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=46.0
Q ss_pred ccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421 507 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 557 (697)
Q Consensus 507 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL 557 (697)
+|+=++|.|+-|++|||.++-=-.++....||++|||+.+|.+++++++.|
T Consensus 286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL 336 (338)
T KOG0919|consen 286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL 336 (338)
T ss_pred HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence 677889999999999999997667888899999999999999999987765
No 67
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=93.48 E-value=0.32 Score=54.44 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=72.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
|=+||+|||=.||+++..-..|- +-|++||+++.+....+.+..-++..+ ..++.+|+-+. +....++-..+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence 67799999999999999999997 357899999999988888765333222 12344555322 22221122389
Q ss_pred cEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 642 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 642 DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
||||==|| .|+... . +. .+++..|.+++.....+
T Consensus 292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRL 325 (393)
T ss_pred cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHH
Confidence 99999998 566421 1 12 66788888888776543
No 68
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.42 E-value=0.23 Score=55.46 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=57.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g 639 (697)
.+-+|||++||.||.++-+.++ + . -.|+++|+++...+.++.+....+-. ..+ ..+|...+.. + ...+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~-----~-~~~~ 308 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ-----W-AENE 308 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc-----c-cccc
Confidence 3578999999999999887663 3 2 24799999999888887766543221 111 2234332221 0 0125
Q ss_pred CccEEEecCCCCccccC
Q 005421 640 SIDFVICQNSVPQIPNS 656 (697)
Q Consensus 640 ~~DLVIGGpPCQ~FS~a 656 (697)
.||.|+-.+||.++..-
T Consensus 309 ~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 309 QFDRILLDAPCSATGVI 325 (426)
T ss_pred ccCEEEEcCCCCCCccc
Confidence 79999999999998764
No 69
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=93.41 E-value=0.23 Score=49.85 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.++||+.||.|.+...+...+. .|+++|+++.+....+....
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence 467899999999999999988875 46899999998877765443
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=93.29 E-value=0.26 Score=47.29 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+-++||+.||.|.+...+.+.|. .++++|+++.+....+......+... ..+..+|..+- + . -..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence 345799999999999999888874 36889999988776665443221111 22334454321 1 1 126
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
+|+|+..+|+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999998754
No 71
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.24 E-value=0.2 Score=52.62 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+=||.|.++..+.+.|- .|+++|+|+.....++..+.. +...++.+|+.++....+ ..+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~ 107 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL 107 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence 456899999999999999998874 478999999988887764321 233456788887753321 158
Q ss_pred EEEecCCC
Q 005421 643 FVICQNSV 650 (697)
Q Consensus 643 LVIGGpPC 650 (697)
+|||-+|=
T Consensus 108 ~vv~NlPY 115 (272)
T PRK00274 108 KVVANLPY 115 (272)
T ss_pred eEEEeCCc
Confidence 89998883
No 72
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=93.16 E-value=0.2 Score=39.78 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHh--CCCCchHHHHHH
Q 005421 136 LHIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDF 173 (697)
Q Consensus 136 ~~~~~~~~lv~MGF~eeev~~AI~~~--G~da~~~~Lld~ 173 (697)
...+.+..|+.+||++.+|.+|+.+. +++.++++++--
T Consensus 2 ~~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 2 ALEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 35678999999999999999999999 788777777643
No 73
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.10 E-value=0.085 Score=52.28 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChhHHH--HHHcCCc------eeeEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHH
Q 005421 563 GGLTMLSVFSGIGGAEVT--LHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES 633 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslG--L~~aGf~------~k~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~ 633 (697)
.+-++||-|||.|++-+= +...++. ...++++|+++.+.+..+.+-...+.... .+...|.+++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------ 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence 456799999999998643 3344432 00167999999998877776654432211 12344666555
Q ss_pred hhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHH
Q 005421 634 LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 691 (697)
Q Consensus 634 l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~ 691 (697)
...+.+|+||.=||=- + |.+....-..||..+++.+.+
T Consensus 102 --~~~~~~d~IvtnPPyG------~------------r~~~~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 102 --LPDGSVDAIVTNPPYG------R------------RLGSKKDLEKLYRQFLRELKR 139 (179)
T ss_dssp --GTTSBSCEEEEE--ST------T------------SHCHHHHHHHHHHHHHHHHHC
T ss_pred --cccCCCCEEEECcchh------h------------hccCHHHHHHHHHHHHHHHHH
Confidence 1225799999888721 1 122111224678888777776
No 74
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.07 E-value=0.14 Score=50.75 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+++||-||||=++.|+...+- +.|+++|||+.+..|++++-+.. +-..-+...||.++-. ..|-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf-EvqidlLqcdildle~--------~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF-EVQIDLLQCDILDLEL--------KGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh-hhhhheeeeeccchhc--------cCCeEe
Confidence 478899999999999999999886 56999999999999887643321 1111133456655432 226788
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
..+=-||
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 8776665
No 75
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.03 E-value=0.16 Score=56.31 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=48.5
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
++++||+|||+|-+.+-+-.- |. +.|+++|+|+.+...++.+....+.....+..+|...+-. .....|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence 589999999999776555443 65 4589999999999999887643211111233344433211 112458
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|.==||
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 88865554
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=92.98 E-value=0.33 Score=48.90 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+.||.|.++.-|.+..-+--.|+++|+++......+.+....+.....+..+|..+.-. ..+.||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence 467899999999999988776532111378999999988777766554322222244556543211 125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+-.+++...
T Consensus 149 ~Ii~~~~~~~~ 159 (215)
T TIGR00080 149 RIYVTAAGPKI 159 (215)
T ss_pred EEEEcCCcccc
Confidence 98877766543
No 77
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.84 E-value=0.3 Score=42.98 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=51.4
Q ss_pred CCcccccCCCCChhHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 005421 564 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~--aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+-+||||=||.|.+.+.+.+ .|.+ |++||+++......+........ ....++.+|+ .... ...++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence 45799999999999999998 7764 78999999998888876522211 2222456777 2211 12357
Q ss_pred ccEEEecC
Q 005421 641 IDFVICQN 648 (697)
Q Consensus 641 ~DLVIGGp 648 (697)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99998654
No 78
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=92.76 E-value=0.36 Score=42.82 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+++||.||.|.+..-+-+..=. ..|+++|+++......+.+-...+.....+..+|+...... ..+.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence 3468999999999999887664211 34789999999888877654433222222333454422110 124789
Q ss_pred EEEe
Q 005421 643 FVIC 646 (697)
Q Consensus 643 LVIG 646 (697)
+|+-
T Consensus 91 ~v~~ 94 (124)
T TIGR02469 91 RVFI 94 (124)
T ss_pred EEEE
Confidence 8874
No 79
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=92.65 E-value=0.26 Score=49.02 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=50.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.++||+-||.|-+++-+..++-. ..|+++|+++......+....+.+.....++.+|+.++. ..+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------HEEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------ccCCccE
Confidence 678999999999888776655422 247899999987777776655433222234566776542 1257999
Q ss_pred EEec
Q 005421 644 VICQ 647 (697)
Q Consensus 644 VIGG 647 (697)
|+..
T Consensus 113 I~s~ 116 (181)
T TIGR00138 113 ITSR 116 (181)
T ss_pred EEeh
Confidence 9864
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.62 E-value=0.27 Score=53.81 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 645 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI 645 (697)
+||||.||.|.++..+.+.+=.. .|.++|+++.+....+.+....+-.. .+...|+.+ .+ .+.+|+|+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~----~~------~~~fDlIv 266 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLEG-EVFASNVFS----DI------KGRFDMII 266 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccc----cc------CCCccEEE
Confidence 79999999999998888764222 37899999988887776654332111 223344421 01 25799999
Q ss_pred ecCCC
Q 005421 646 CQNSV 650 (697)
Q Consensus 646 GGpPC 650 (697)
.-||=
T Consensus 267 sNPPF 271 (342)
T PRK09489 267 SNPPF 271 (342)
T ss_pred ECCCc
Confidence 98873
No 81
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=92.54 E-value=0.23 Score=51.40 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+.||.|.++..+.+.+- .|+++|+|+.....++..+.. .....++.+|+.++.... +...+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence 456899999999999999999884 378999999998888765432 122235667887665321 11125
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+|..|
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888887
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=92.45 E-value=0.25 Score=52.30 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.+|||+.||.|.+++++.++|. ..|+++|+++.+....+.+..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHH
Confidence 457899999999999999999986 458999999998887777654
No 83
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.43 E-value=0.15 Score=53.77 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=53.9
Q ss_pred HhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHHhhcC
Q 005421 539 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG 612 (697)
Q Consensus 539 k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a------Gf~~k~VvaVEid~~ar~t~~~~~~~~n 612 (697)
|.+|..|....++.++.-+-+.. .+-+|+|.+||.|||-+++.+. -+.-..++++|+++.+....+.+..-++
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 34566666666666554444332 3567999999999998887651 0112357899999998876554221111
Q ss_pred CCCC--ccccccccccChhhHHHhhh-ccCCccEEEecCCCCcc
Q 005421 613 QTGE--LVQIEDIQALTTKKFESLIH-KLGSIDFVICQNSVPQI 653 (697)
Q Consensus 613 ~~g~--li~~~DI~~Lt~~~I~~l~~-~~g~~DLVIGGpPCQ~F 653 (697)
-... .+..+|. +..... ....+|+|+|-||=-..
T Consensus 102 ~~~~~~~i~~~d~-------l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDS-------LENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-T-------TTSHSCTST--EEEEEEE--CTCE
T ss_pred ccccccccccccc-------ccccccccccccccccCCCCcccc
Confidence 0011 1223332 111100 13589999999996655
No 84
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.26 E-value=0.23 Score=53.34 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=63.3
Q ss_pred Hhhhhhhcc--ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-CCC
Q 005421 539 ESLRHCFQT--DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG 615 (697)
Q Consensus 539 k~Lgnsfqv--dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-~~g 615 (697)
|.||-.|=+ ..+..++..+. ...+-+||++-||.|.++..+...+- .|+++|+|+.....++......+ ...
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 355666622 23333333332 22456799999999999998888774 37899999999988887554322 122
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421 616 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 616 ~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
..++.+|+.++. +..+|+|++-.|=+
T Consensus 87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTE----------FPYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence 235667776543 13578999877755
No 85
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.05 E-value=0.41 Score=47.38 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
.+-+|||++||.|.+++.+.+++-. ..|+++|+++...+..+.+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3568999999999999888765321 3578999999998888776543
No 86
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=91.96 E-value=0.48 Score=47.54 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||+.||.|.+..-+.+. |-. ..|+++|+++...+..+......+.....++.+|+.++.- ..+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence 4578999999999998877654 321 2478999999887766654332222222234566655431 12579
Q ss_pred cEEEecCCCCcc
Q 005421 642 DFVICQNSVPQI 653 (697)
Q Consensus 642 DLVIGGpPCQ~F 653 (697)
|+|+-+...+.+
T Consensus 116 D~V~~~~~l~~~ 127 (231)
T TIGR02752 116 DYVTIGFGLRNV 127 (231)
T ss_pred cEEEEecccccC
Confidence 999877665543
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=91.95 E-value=0.25 Score=52.16 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+-++|||-||+|.+.+.+.+- . + .-+++||+++.+..-.+++-..++.. ...++..||+++.... .+..|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~-~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------~~~~f 116 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTE-K-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------VFASF 116 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCC-C-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------ccccc
Confidence 678999999999999888754 3 2 24689999998876555533221111 1224567776654321 23579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+||.-||=-.
T Consensus 117 D~Ii~NPPyf~ 127 (248)
T COG4123 117 DLIICNPPYFK 127 (248)
T ss_pred CEEEeCCCCCC
Confidence 99998887543
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.78 E-value=0.27 Score=52.35 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=55.8
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 645 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI 645 (697)
+|+||.||.|-+.+++...+-. ..|+++|||+.|.+.-+.+...++- .++..+..+-++. ..+.||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---~~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQSDLFEP---LRGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---cCCceeEEE
Confidence 7999999999999999988754 3689999999999888877654421 2233333311111 235899999
Q ss_pred ecCCCCccc
Q 005421 646 CQNSVPQIP 654 (697)
Q Consensus 646 GGpPCQ~FS 654 (697)
.=||==+-.
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999877665
No 89
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.43 E-value=0.42 Score=51.99 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+|||+-||.|.+...|.+.|.. |++||+++......+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence 4678999999999999999998864 689999999887777643
No 90
>PRK14135 recX recombination regulator RecX; Provisional
Probab=91.19 E-value=2.9 Score=43.67 Aligned_cols=130 Identities=14% Similarity=0.159 Sum_probs=81.8
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
.-|+..|..-||+++.|..||+.. |-=|.....+..+....-...
T Consensus 75 ~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-------------------------------- 122 (263)
T PRK14135 75 KEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-------------------------------- 122 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc--------------------------------
Confidence 458899999999999999999865 433556666666553321100
Q ss_pred CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421 129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 208 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~ 208 (697)
. . ..+....|...||+.+.|..||+++-++.-++.+..++-. ....... .+ ...
T Consensus 123 -~---g--~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k--~~~~~~~-------~~-----------~~~ 176 (263)
T PRK14135 123 -K---G--PRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK--LLKKYQK-------LP-----------FKA 176 (263)
T ss_pred -c---c--hHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH--HHHHhcC-------CC-----------HHH
Confidence 0 0 3456788999999999999999998554323322222111 1111000 00 001
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 005421 209 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI 239 (697)
Q Consensus 209 ~m~k~l-~L~~MGFseeEas~AI~rcG~da~i 239 (697)
.-.|+. +|..-||+.+.+..|++.+..+...
T Consensus 177 ~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~ 208 (263)
T PRK14135 177 LKQKIIQSLLTKGFSYEVIKAALEELDLEQDE 208 (263)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcccCCCh
Confidence 124555 8999999999999999999765433
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.95 E-value=0.37 Score=49.83 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=41.0
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.|..+...+-+|||+-||.|.+.+.+.+.|.. .|+++|+|+.+.+..+.+..
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 33333446789999999999999999999864 38899999999877776543
No 92
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=1.2 Score=52.81 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCcccccccc-chh-hhHHH
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY-GTM-EITLQ 215 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~-~~m-~k~l~ 215 (697)
.-.+.+|+.||||++-..+|+=--|... .+.--.+|+.+-. +.+-++..--.... ...-- ..- +-.-+
T Consensus 572 ~s~i~qL~~MGFp~eac~rAly~tgN~~-aEaA~NWl~~HMd----Dpd~~~p~vvp~~~-----~~a~~~~~~e~~v~s 641 (763)
T KOG0944|consen 572 RSVISQLVEMGFPEEACRRALYYTGNSG-AEAASNWLMEHMD----DPDIDDPFVVPGNS-----PKADAREVDEESVAS 641 (763)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhcCcc-HHHHHHHHHHhcc----CcccCCceecCCCC-----CccccCCCChhHhee
Confidence 4478999999999999999998888876 3555555554421 00001110000000 00000 011 22338
Q ss_pred HHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 005421 216 LLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 250 (697)
Q Consensus 216 L~~MGFseeEas~AI~rcG~da~i~eLvD~I~Aaq 250 (697)
++.|||+..+|..|+.-. +..|+.+||-|++--
T Consensus 642 i~smGf~~~qa~~aL~~~--n~nveravDWif~h~ 674 (763)
T KOG0944|consen 642 IVSMGFSRNQAIKALKAT--NNNVERAVDWIFSHM 674 (763)
T ss_pred eeeecCcHHHHHHHHHhc--CccHHHHHHHHHhcc
Confidence 999999999999888754 557999999998743
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=90.82 E-value=0.46 Score=53.72 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.++|||.||.|-+.+.+.+..-. ..|.++|+++.+.+..+.+....+ ....++.+|+.+.. + ...+.+|+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL 322 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI 322 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence 458999999999998887654211 247899999999988887664332 11223456654321 0 01246999
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+.-||
T Consensus 323 IVSNPP 328 (423)
T PRK14966 323 IVSNPP 328 (423)
T ss_pred EEECCC
Confidence 998777
No 94
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.71 E-value=0.76 Score=45.90 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
+-+|||+=||.|.+++-|.+.|++ |.++|+++.+....+..-
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIK 72 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHH
Confidence 468999999999999999999974 688999998877766543
No 95
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=90.69 E-value=0.68 Score=46.49 Aligned_cols=81 Identities=20% Similarity=0.122 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI-~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||-||.|.++..+.+.. +-..|++||+++......+......+.....++.+|+ ..+. ... ..+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~~-~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DMF-PDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HHc-Ccccc
Confidence 45789999999999999886642 2235899999999888877665433222223455666 3322 111 12579
Q ss_pred cEEEecCCC
Q 005421 642 DFVICQNSV 650 (697)
Q Consensus 642 DLVIGGpPC 650 (697)
|+|+--+|.
T Consensus 113 D~V~~~~~~ 121 (202)
T PRK00121 113 DRIYLNFPD 121 (202)
T ss_pred ceEEEECCC
Confidence 999876554
No 96
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=90.66 E-value=0.8 Score=44.89 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=36.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+-++||+.||.|.+++.+.+.+-. ..|+++|+++.+....+.+..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 4568999999999999988776532 247899999998887776544
No 97
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=90.28 E-value=0.77 Score=45.79 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=37.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
.+.+|||+-||.|.+...|.+.|.. |.++|+++......+..+..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence 4578999999999999999888853 78999999988777766543
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=90.07 E-value=0.85 Score=45.38 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.8
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+-+|||+.||.|.+++.+-+ +|-. ..|+++|+++......+.+-
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~ 85 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNA 85 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHH
Confidence 456899999999999988754 3421 24789999998877666543
No 99
>PRK14135 recX recombination regulator RecX; Provisional
Probab=89.98 E-value=3.8 Score=42.75 Aligned_cols=136 Identities=16% Similarity=0.257 Sum_probs=77.8
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+...++..|...||+.+.|..||++.-+++.-..+..+... .+..... -
T Consensus 124 g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k-~~~~~~~---~--------------------------- 172 (263)
T PRK14135 124 GPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK-LLKKYQK---L--------------------------- 172 (263)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH-HHHHhcC---C---------------------------
Confidence 34568999999999999999999987443221111111111 1100000 0
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH-Hh-hhcccccccCCCCCCCCCCCCCcccccccc
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT-AA-QISENFEKETDDAPHDNDGTNEDKSDETLY 207 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~-a~-Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~ 207 (697)
.. .. .......+|..-||+.+.|..|++++..+...++-.+.+. .+ ........ . + + .
T Consensus 173 ~~-~~-~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~~-----~--~--------~---~ 232 (263)
T PRK14135 173 PF-KA-LKQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYSK-----Y--D--------G---Y 232 (263)
T ss_pred CH-HH-HHHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHhc-----C--C--------H---H
Confidence 00 00 1456678899999999999999999875432222222211 01 01111100 0 0 0 1
Q ss_pred chhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421 208 GTMEITL-QLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 208 ~~m~k~l-~L~~MGFseeEas~AI~rcG~d 236 (697)
....|+. +|..=||+-+.+..++.....+
T Consensus 233 k~k~K~~~~L~rrGF~~~~I~~~l~~~~~~ 262 (263)
T PRK14135 233 ELKQKLKQALYRKGFSYDDIDSFLREYGIE 262 (263)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence 1235665 9999999999999999887543
No 100
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.71 E-value=0.3 Score=53.05 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=47.8
Q ss_pred hccccchhhhccccccCCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 545 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 545 fqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlsl-GL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
|+--.+..-++|++ ++..+-.++|||||||=|++ -+-.+|- +.|+|+|+++.+...|++.-+
T Consensus 177 FS~GN~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 177 FSRGNIKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred hhcCcHHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence 55545555555554 34455779999999999999 6779997 569999999999999987543
No 101
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=89.69 E-value=0.55 Score=47.20 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=52.0
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
+.++.+.++||+=||.|.+++.+.++.-. ..|+++|+++......+......+.....++.+|+.++.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~ 110 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E 110 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence 33444789999999999988877653211 3478999999887777765554432222344566655432 2
Q ss_pred CCccEEEec
Q 005421 639 GSIDFVICQ 647 (697)
Q Consensus 639 g~~DLVIGG 647 (697)
+.+|+|+..
T Consensus 111 ~~fDlV~~~ 119 (187)
T PRK00107 111 EKFDVVTSR 119 (187)
T ss_pred CCccEEEEc
Confidence 479999953
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=89.64 E-value=1.1 Score=44.77 Aligned_cols=80 Identities=23% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||++-||.|.++.-+.+++- .|+++|+++......+.++...+.....+..+|..+. + ...+.||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence 467899999999999887777752 4789999999888777776644322222334554321 1 1125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+-..+|..+
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 98887776643
No 103
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=89.37 E-value=0.92 Score=47.88 Aligned_cols=71 Identities=34% Similarity=0.345 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+++|||.=||.|=++.-+.++|.. |.++|+++.+..+-+.++...+ ..+ |=...+ ++++...-+.||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~g---v~i---~y~~~~---~edl~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESG---VNI---DYRQAT---VEDLASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhcc---ccc---cchhhh---HHHHHhcCCCcc
Confidence 4789999999999999999999964 7899999999999988776442 111 112222 333333337899
Q ss_pred EEE
Q 005421 643 FVI 645 (697)
Q Consensus 643 LVI 645 (697)
+|+
T Consensus 127 vV~ 129 (243)
T COG2227 127 VVT 129 (243)
T ss_pred EEE
Confidence 998
No 104
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=89.10 E-value=0.81 Score=49.70 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
.+.+||||-||.|.+.+.|.+.|.+ |+++|+++...+..+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR 185 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence 4679999999999999999999864 68999999887666553
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.05 E-value=0.86 Score=52.42 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.+|||+.||.|.+.+.+...- +-..|+++|+++.+....+.+....+... ..++.+|+.+ .+ ..+.||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence 4679999999999988775431 11247899999999888877654332111 1123344321 11 124799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+..||=-+.
T Consensus 209 lIvsNPPYi~~ 219 (506)
T PRK01544 209 FIVSNPPYISH 219 (506)
T ss_pred EEEECCCCCCc
Confidence 99999885543
No 106
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=88.97 E-value=0.95 Score=46.71 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+=||.|.++..|.+.|.+ |+++|+++......+......+... ..++.+|+.++.. . ..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence 45679999999999999999999864 6889999998877776543222111 1234566665432 1 1257
Q ss_pred ccEEEecCC
Q 005421 641 IDFVICQNS 649 (697)
Q Consensus 641 ~DLVIGGpP 649 (697)
||+|+....
T Consensus 113 fD~V~~~~v 121 (255)
T PRK11036 113 VDLILFHAV 121 (255)
T ss_pred CCEEEehhH
Confidence 898886543
No 107
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=88.87 E-value=0.81 Score=51.02 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=50.1
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~----li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
-+||||.||.|-+.+.+.+.+=. ..|.+||+++.+....+.++... .... .+...|+-+ .+ ..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~ 298 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR 298 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence 37999999999999888876422 24789999999988888776533 2211 122333311 11 1247
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
||+|+.-||.
T Consensus 299 fDlIlsNPPf 308 (378)
T PRK15001 299 FNAVLCNPPF 308 (378)
T ss_pred EEEEEECcCc
Confidence 9999998885
No 108
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=88.71 E-value=0.77 Score=47.79 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=48.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~-t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-++||+-||.||++..+.+.|. +.|++||+++.-.. .++. +..-......+|+.++.+++. ..+..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence 466899999999999999999985 56899999985322 2221 111112345677766655542 133456
Q ss_pred cEEEec
Q 005421 642 DFVICQ 647 (697)
Q Consensus 642 DLVIGG 647 (697)
|+++-.
T Consensus 145 DvsfiS 150 (228)
T TIGR00478 145 DVSFIS 150 (228)
T ss_pred eEEEee
Confidence 766643
No 109
>KOG2730 consensus Methylase [General function prediction only]
Probab=88.70 E-value=0.63 Score=48.86 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-Ccccccccccc
Q 005421 548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL 626 (697)
Q Consensus 548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~L 626 (697)
.-++.|+.--+.-.-+.-.+||-|||+||-++=|-.-|-. |+++|||+.-..--+.+-+-.+-+. .-++++|+-++
T Consensus 79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 3344454333332325567999999999999999998853 7899999986544443211111111 11345666544
Q ss_pred ChhhHHHhhhccCCccEEEecCCCCccccC
Q 005421 627 TTKKFESLIHKLGSIDFVICQNSVPQIPNS 656 (697)
Q Consensus 627 t~~~I~~l~~~~g~~DLVIGGpPCQ~FS~a 656 (697)
-. .+. +. ..-+|+|.+.||=-+-|..
T Consensus 156 ~~-~lq-~~--K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 156 AS-KLK-AD--KIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred HH-HHh-hh--hheeeeeecCCCCCCcchh
Confidence 21 111 11 1237899998887776543
No 110
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=87.83 E-value=1.2 Score=39.08 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=47.4
Q ss_pred ccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 567 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 567 vLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
||||=||.|-....|.+. |.+ ..+.++|+++.+....+++....+. ...++..|++++.. ..+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence 689999999999998876 432 3578999999998887776543322 33456788877632 2358999
Q ss_pred EEe
Q 005421 644 VIC 646 (697)
Q Consensus 644 VIG 646 (697)
|+.
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.57 E-value=0.93 Score=49.22 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=48.7
Q ss_pred ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
+|.+.=|.-|..+-..+.+|||+=||.|=|++|..++|- +-++++|||+.|.++-+.+-.
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence 344444666666667899999999999999999999997 458999999999988876543
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=87.55 E-value=0.77 Score=47.44 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=56.9
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccC
Q 005421 550 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT 627 (697)
Q Consensus 550 i~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt 627 (697)
.+.+|..|-...+ .-++|++.+|+|.-.+.+.++ +-. -.|+++|+++.+.+..+.+|...+... ..++.+|..++
T Consensus 56 ~g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~- 132 (234)
T PLN02781 56 EGLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA- 132 (234)
T ss_pred HHHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-
Confidence 3444555544443 457999999999866655443 211 247899999999999999988664322 12345666432
Q ss_pred hhhHHHhhhc--cCCccEEEecC
Q 005421 628 TKKFESLIHK--LGSIDFVICQN 648 (697)
Q Consensus 628 ~~~I~~l~~~--~g~~DLVIGGp 648 (697)
+..+... .+.||+|+-..
T Consensus 133 ---L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 133 ---LDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred ---HHHHHhCCCCCCCCEEEECC
Confidence 2222222 25799887553
No 113
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.55 E-value=2.4 Score=47.46 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHcC--------------------------------------CceeeEE
Q 005421 551 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--------------------------------------IKLKGVI 592 (697)
Q Consensus 551 ~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aG--------------------------------------f~~k~Vv 592 (697)
+.=+-.|-.+.+. -.++|-|||.|.+-+=.-..| -++..++
T Consensus 180 AaAil~lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 3333344455554 479999999998754222222 1222477
Q ss_pred EeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCccccCCCCCCCCCccccccc
Q 005421 593 SIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAES 671 (697)
Q Consensus 593 aVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r 671 (697)
++|||+...+.-+.+..+......+ +...|++.+... +..+|+||+-||= |.|
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeR 312 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GER 312 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chh
Confidence 9999999999999888766433322 345677777643 2578999987772 222
Q ss_pred CCCCCCccchHHHHHHHHHHh
Q 005421 672 DNLPDFDFSLYYEFVRVVQRV 692 (697)
Q Consensus 672 ~gl~D~R~~Lf~Ey~RIV~~v 692 (697)
-|-...-..||-+|.+.+++.
T Consensus 313 lg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 313 LGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cCChhhHHHHHHHHHHHHHHH
Confidence 332222345999999888554
No 114
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=87.33 E-value=1.8 Score=45.27 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=47.1
Q ss_pred chhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEE
Q 005421 514 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI 592 (697)
Q Consensus 514 ~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf~~k~Vv 592 (697)
.-.|+|||.-.-|+- ++..+... ++.+. .+.+.+|||+=||.|+++.-+.+ .|. .|+
T Consensus 22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~ 79 (263)
T PTZ00098 22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH 79 (263)
T ss_pred hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence 346888887666654 44444333 11121 23467899999999998877744 354 378
Q ss_pred EeeCCHHHHHHHHHH
Q 005421 593 SIETSETNRRILKRW 607 (697)
Q Consensus 593 aVEid~~ar~t~~~~ 607 (697)
++|+++......+..
T Consensus 80 giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 80 GVDICEKMVNIAKLR 94 (263)
T ss_pred EEECCHHHHHHHHHH
Confidence 999999877666553
No 115
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=87.31 E-value=0.96 Score=37.72 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDA 165 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da 165 (697)
..+.+..|+.|||+.+-|..|+.+.|-+.
T Consensus 9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 9 DKDLVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 45678999999999999999999999874
No 116
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.25 E-value=1.8 Score=43.03 Aligned_cols=83 Identities=19% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.++|||=||.|.+.+.+.+..= -..++++|+++......++.....+.....++.+|+.++....+ ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence 345799999999999988887642 23578999999876665554443322222245567765432111 124699
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
.|+--+|..
T Consensus 90 ~v~~~~pdp 98 (194)
T TIGR00091 90 KVFLNFPDP 98 (194)
T ss_pred EEEEECCCc
Confidence 998777643
No 117
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=87.24 E-value=0.95 Score=48.91 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=51.1
Q ss_pred cccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421 566 TMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 644 (697)
Q Consensus 566 tvLSLFSGiGGlslGL-~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV 644 (697)
.++||+||.|.+++++ |.++ + -+|.|+|.++.|......+-....-.|....+.-|. +.+....+....|..|++
T Consensus 151 ~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDLL 226 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeEE
Confidence 6999999999999996 5666 4 468899999999876655433221122221111111 222222222234899999
Q ss_pred EecCCCC
Q 005421 645 ICQNSVP 651 (697)
Q Consensus 645 IGGpPCQ 651 (697)
++-||--
T Consensus 227 vsNPPYI 233 (328)
T KOG2904|consen 227 VSNPPYI 233 (328)
T ss_pred ecCCCcc
Confidence 9999864
No 118
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=87.19 E-value=1.2 Score=45.49 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~ 604 (697)
+.+-+||++.||.|--.+-|.+.|+. |++||+++.+...+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence 45679999999999999999999985 68999999998754
No 119
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=87.00 E-value=1.6 Score=44.38 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~~~g~ 640 (697)
+.+-+||||=||.|+++..+.+..-.-..|++||+++.. +.++..++.+||.+... ..|.... ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence 346689999999999987665542111358999999831 12344467789887642 2232211 2367
Q ss_pred ccEEEec
Q 005421 641 IDFVICQ 647 (697)
Q Consensus 641 ~DLVIGG 647 (697)
+|+|+..
T Consensus 118 ~D~V~S~ 124 (209)
T PRK11188 118 VQVVMSD 124 (209)
T ss_pred CCEEecC
Confidence 9999973
No 120
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=86.86 E-value=0.79 Score=47.90 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=56.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||++-.|.|-++..|...| +-++++|+|+.....++..+. ....-.++.+|+-+++..... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~ 99 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL 99 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence 56889999999999999999999 458899999999888886443 122233567899888754321 23566
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+|--|
T Consensus 100 ~vv~NlP 106 (262)
T PF00398_consen 100 LVVGNLP 106 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 7787766
No 121
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=86.76 E-value=2 Score=42.79 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=48.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+|||+=||.|-.++-|.+.|++ |+++|+++.+...++......+-. ......|+.... + .+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~---~------~~~fD~ 97 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA---L------NEDYDF 97 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---c------cCCCCE
Confidence 468999999999999999888974 689999999887776544322211 112223443221 1 146898
Q ss_pred EEecCCC
Q 005421 644 VICQNSV 650 (697)
Q Consensus 644 VIGGpPC 650 (697)
|+...+.
T Consensus 98 I~~~~~~ 104 (195)
T TIGR00477 98 IFSTVVF 104 (195)
T ss_pred EEEeccc
Confidence 8866554
No 122
>PLN02244 tocopherol O-methyltransferase
Probab=86.55 E-value=1.8 Score=47.11 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=47.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
..+-+|||+-||.|++..-|.+. |. .|++||+++......+......+.. ...++.+|+.++.- .-+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence 34578999999999999888764 64 3688999998776655433222111 12244567665431 124
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.||+|+.
T Consensus 186 ~FD~V~s 192 (340)
T PLN02244 186 QFDLVWS 192 (340)
T ss_pred CccEEEE
Confidence 6888875
No 123
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.34 E-value=2.1 Score=43.41 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|.++.-+.++ |- -..|+++|+++......+..+...+.....+..+|...... ..+.+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~f 146 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAPY 146 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCCc
Confidence 4678999999999999776654 31 12478999999988877776654322112234455533211 12568
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+-
T Consensus 147 D~I~~ 151 (212)
T PRK13942 147 DRIYV 151 (212)
T ss_pred CEEEE
Confidence 87764
No 124
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.08 E-value=1.8 Score=45.81 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.8
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
+||||=||.|...+-|.+.|++ |.++|+++.+...++.....
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence 8999999999999999888974 68999999988877765443
No 125
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.04 E-value=2.6 Score=42.32 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-. ..+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~ 142 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP 142 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence 3578999999999998776653 21 1247899999987766665443322111 1234566654221 1257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
+|+|+-+..+..
T Consensus 143 fD~Ii~~~~~~~ 154 (205)
T PRK13944 143 FDAIIVTAAAST 154 (205)
T ss_pred ccEEEEccCcch
Confidence 898887665543
No 126
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.93 E-value=2.1 Score=51.24 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=36.6
Q ss_pred eEEEeeCCHHHHHHHHHHHhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421 590 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 649 (697)
Q Consensus 590 ~VvaVEid~~ar~t~~~~~~~~n~~g~-li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP 649 (697)
.++++|+|+.+....+.+....+.... .+..+|+.++.... ..+.+|+|+.=||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 378999999999999988776543321 24467777664211 1146899997777
No 127
>PRK10742 putative methyltransferase; Provisional
Probab=85.53 E-value=2.9 Score=44.41 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=55.6
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+|||+|+|-|..++=+-..|.. |..||-++.....++.......+...+- +..-|+-+..+.+.-+......||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 48999999999998888888974 7889999999988887655422211110 112344344444432222224699
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
||.-=||=..
T Consensus 167 VVYlDPMfp~ 176 (250)
T PRK10742 167 VVYLDPMFPH 176 (250)
T ss_pred EEEECCCCCC
Confidence 9999887443
No 128
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=85.17 E-value=1.4 Score=47.59 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=42.9
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
|..|..+...+-+|||+=||.|=|+++..++|.. .|+++|||+.|.++.+.+-.
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~ 205 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE 205 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence 3444444555679999999999999999999974 58999999999988877644
No 129
>PRK00811 spermidine synthase; Provisional
Probab=84.89 E-value=1.8 Score=46.09 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI 635 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~ 635 (697)
+++-+||+|-+|.|++..-+.+. +. +.|..||+|+...+..+.|+...+ .+...++.+|..+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence 45678999999999998766554 54 468899999999999998875321 1122244566543211
Q ss_pred hccCCccEEEecC
Q 005421 636 HKLGSIDFVICQN 648 (697)
Q Consensus 636 ~~~g~~DLVIGGp 648 (697)
...+.+|+|+--.
T Consensus 146 ~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 ETENSFDVIIVDS 158 (283)
T ss_pred hCCCcccEEEECC
Confidence 1235799999754
No 130
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=84.37 E-value=2.3 Score=42.90 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.++|+|.||.|.+...+.+.|.. ++++|+++......+...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence 3678999999999999999888853 688999998876666544
No 131
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=84.29 E-value=1.4 Score=43.62 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=52.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+||||-||.|.++..+.+.+... .++++|+++......+.... ....++.+|+.++.- ..+.+|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence 4689999999999999999888543 47899999988766654321 111234567665431 1246899
Q ss_pred EEecCCCCc
Q 005421 644 VICQNSVPQ 652 (697)
Q Consensus 644 VIGGpPCQ~ 652 (697)
|+....++.
T Consensus 102 vi~~~~l~~ 110 (240)
T TIGR02072 102 IVSNLALQW 110 (240)
T ss_pred EEEhhhhhh
Confidence 997765543
No 132
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=84.05 E-value=2.2 Score=43.68 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=48.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
.-+|||+=||.|.++.-|...|. .|+++|+++...+..+.. .....++.+|+.++.- ..+.||+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~-----~~~~~~~~~d~~~~~~--------~~~~fD~ 106 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQK-----DAADHYLAGDIESLPL--------ATATFDL 106 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCCEEEcCcccCcC--------CCCcEEE
Confidence 46799999999999988888774 478999999887666542 1112245677765531 1146899
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+...+
T Consensus 107 V~s~~~ 112 (251)
T PRK10258 107 AWSNLA 112 (251)
T ss_pred EEECch
Confidence 886543
No 133
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=4.7 Score=46.73 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCC-CC--ccccccccchhhhH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGT-NE--DKSDETLYGTMEIT 213 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~-~E--e~ede~~~~~m~k~ 213 (697)
+-..+.+|+.||||++...+|+---|..+ .+.-..+|+.+-- |..-.|-|- -+ -+.|.. -+..+.
T Consensus 558 Nqs~I~qL~~mGfp~~~~~rAL~~tgNqD-aEsAMNWLFqHMd---------DPdlndP~~~~~~vPKkDke--VdE~~~ 625 (749)
T COG5207 558 NQSLIRQLVDMGFPEEDAARALGITGNQD-AESAMNWLFQHMD---------DPDLNDPFVPPPNVPKKDKE--VDESKA 625 (749)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHhhccCcc-hHHHHHHHHhhcc---------CcccCCCCCCCCCCCccccc--ccHHHH
Confidence 44578999999999999999999999876 4777788875521 111001010 00 011110 022566
Q ss_pred HHHHhcCCCHHHHHHHHHh
Q 005421 214 LQLLEMGFSENQVSLAIEK 232 (697)
Q Consensus 214 l~L~~MGFseeEas~AI~r 232 (697)
.+|++|||....++-|+=-
T Consensus 626 ~Slle~Gln~n~~Rkal~~ 644 (749)
T COG5207 626 RSLLENGLNPNLCRKALMD 644 (749)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 6999999999999987643
No 134
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=83.55 E-value=2.6 Score=43.31 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~ 604 (697)
+.+-+||++.||.|--.+-|-..|+. |++||+++.|...+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence 34569999999999999999999985 68999999988754
No 135
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=83.34 E-value=2.7 Score=48.25 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=57.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||++||-||=+.-+..+ +-. -.|+|+|+++.-.++++.+-...+-....+...|.+++.. . ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence 4578999999999999887653 111 1489999999988888876654432222233345443321 1 12469
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|.|+-=.||.+...-
T Consensus 185 D~ILvDaPCSG~G~~ 199 (470)
T PRK11933 185 DAILLDAPCSGEGTV 199 (470)
T ss_pred CeEEEcCCCCCCccc
Confidence 999999999987654
No 136
>PRK05785 hypothetical protein; Provisional
Probab=83.20 E-value=2.7 Score=43.11 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+||||-||.|-+...|.+. |. .|+++|+++...+.-+. + .. ...+|..++.- .-+.|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~---~----~~-~~~~d~~~lp~--------~d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV---A----DD-KVVGSFEALPF--------RDKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh---c----cc-eEEechhhCCC--------CCCCE
Confidence 3578999999999998888877 43 47899999998765542 1 11 23566655531 12579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+.+.-.+.
T Consensus 112 D~v~~~~~l~~ 122 (226)
T PRK05785 112 DVVMSSFALHA 122 (226)
T ss_pred EEEEecChhhc
Confidence 99998764443
No 137
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.82 E-value=1.5 Score=42.88 Aligned_cols=39 Identities=33% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~ 604 (697)
.+=.|||.|+|.|.-.++..++|- ..+++|+++..+++.
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIA 229 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHh
Confidence 355699999999999999999995 368999999876554
No 138
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=82.82 E-value=3.5 Score=39.76 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=54.1
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+.-++...|..-||+.+.|..||++..+ |...++..|+.=.- . . ... .+
T Consensus 77 g~~~I~~~L~~kGi~~~~I~~~l~~~~~-d~~e~a~~~~~k~~-~---~--------------------~~~----~~-- 125 (157)
T PRK00117 77 GPRRIRQELRQKGVDREIIEEALAELDI-DWEELARELARKKF-R---R--------------------PLP----DD-- 125 (157)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCc-cHHHHHHHHHHHHc-C---C--------------------CCC----CC--
Confidence 4556889999999999999999999874 33333333332110 0 0 000 00
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
. ....+.+.+|+.=||+-+.|..||++..++
T Consensus 126 -~---~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 126 -A---KEKAKLVRFLARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred -H---HHHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 0 116678899999999999999999886554
No 139
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=82.64 E-value=3.6 Score=40.36 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|++...+-+.+.....++++|+++......+.... . .....+..+|+.++.. ..+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence 46789999999999999888777432357899999888777665432 1 1122244567665431 124688
Q ss_pred EEEe
Q 005421 643 FVIC 646 (697)
Q Consensus 643 LVIG 646 (697)
+|+-
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 7764
No 140
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=82.29 E-value=3.2 Score=41.26 Aligned_cols=43 Identities=37% Similarity=0.359 Sum_probs=34.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+||||-||.|.+...+.+.|.. ++++|+++......+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence 3678999999999999888888863 788999988766665543
No 141
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.03 E-value=2.3 Score=48.49 Aligned_cols=141 Identities=22% Similarity=0.274 Sum_probs=82.6
Q ss_pred hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhh--c---cC-CCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNAL--Q---ES-NSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal--~---~s-~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
.+-+++|||-++-...|+.-.-. +++.-+.+|..-.+= + +. .++..- + .. -.++..
T Consensus 307 lsllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~-~--------~r--~k~~n~------ 368 (568)
T KOG2561|consen 307 LSLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREI-L--------ER--KKYGNT------ 368 (568)
T ss_pred HHHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-H--------HH--HHhcCC------
Confidence 45689999999999999987654 888888887653321 0 00 000000 0 00 000000
Q ss_pred CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421 129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 208 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~ 208 (697)
.+-.-+....+..|++|||..+.|..|+.+.-.+ +..-||.+ |. ++ |... .+...+.
T Consensus 369 --~~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Nd--i~~aldll---q~------es-del~---------~n~~~~p 425 (568)
T KOG2561|consen 369 --PMKKWVNPRSLERLVSMGYERELAAEALRRNEND--IQKALDLL---QD------ES-DELE---------SNKPKRP 425 (568)
T ss_pred --CcccccCHHHHHHHHhcchHhHHHHHHHHhccCc--HHHHHHhc---CC------cc-hhhh---------ccCCCCC
Confidence 0000114456789999999999999999996554 34434431 10 01 1110 1111122
Q ss_pred -hh--hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 005421 209 -TM--EITLQLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 209 -~m--~k~l~L~~MGFseeEas~AI~rcG~d 236 (697)
+. .++-.||.|||.+--|..|++-.|..
T Consensus 426 ~~vd~~~la~Lv~mGF~e~~A~~ALe~~gnn 456 (568)
T KOG2561|consen 426 EQVDGISLAELVSMGFEEGKARSALEAGGNN 456 (568)
T ss_pred cccchhhHHHHHHhccccchHHHHHHhcCCc
Confidence 22 34459999999999999999999986
No 142
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.88 E-value=3.7 Score=43.83 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=58.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||+.||.||=+..+..+-..--.++|+|++..-...++.+-...+.....+...|-+++..... ...||.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~ 159 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR 159 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence 56699999999999877766543223589999999988888876655433322222244443332211 125999
Q ss_pred EEecCCCCccccC
Q 005421 644 VICQNSVPQIPNS 656 (697)
Q Consensus 644 VIGGpPCQ~FS~a 656 (697)
|.-=+||.+....
T Consensus 160 VlvDaPCSg~G~i 172 (283)
T PF01189_consen 160 VLVDAPCSGLGTI 172 (283)
T ss_dssp EEEECSCCCGGGT
T ss_pred hhcCCCccchhhh
Confidence 9999999997654
No 143
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.70 E-value=3.4 Score=45.16 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.++.-+.+..-.-..|+++|+++......+......+.....++.+|..+... ..+.+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence 457899999999999887765431111378999999876655544333222222234555543211 124577
Q ss_pred EEEec
Q 005421 643 FVICQ 647 (697)
Q Consensus 643 LVIGG 647 (697)
+|+-+
T Consensus 152 ~Ii~~ 156 (322)
T PRK13943 152 VIFVT 156 (322)
T ss_pred EEEEC
Confidence 76653
No 144
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.49 E-value=3.5 Score=47.07 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=60.2
Q ss_pred hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCch
Q 005421 55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDE 134 (697)
Q Consensus 55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s~ 134 (697)
+..+++|||..+++.-|++.+-. |...-|+.|-+-+. . + +.|.+.+ | .+.
T Consensus 379 ~~rL~~mGyer~la~eaL~r~~N-di~~aldllq~esd---------e-l--------~~n~~~~-----p---~~v--- 428 (568)
T KOG2561|consen 379 LERLVSMGYERELAAEALRRNEN-DIQKALDLLQDESD---------E-L--------ESNKPKR-----P---EQV--- 428 (568)
T ss_pred HHHHHhcchHhHHHHHHHHhccC-cHHHHHHhcCCcch---------h-h--------hccCCCC-----C---ccc---
Confidence 44799999999999999998643 77666665533111 0 1 1221221 1 011
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 135 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 135 ~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
-..++..|+.|||.+-.+..|++--|.. .++.+.++.++-
T Consensus 429 --d~~~la~Lv~mGF~e~~A~~ALe~~gnn--~~~a~~~L~~s~ 468 (568)
T KOG2561|consen 429 --DGISLAELVSMGFEEGKARSALEAGGNN--EDTAQRLLSASV 468 (568)
T ss_pred --chhhHHHHHHhccccchHHHHHHhcCCc--HHHHHHHHHHhC
Confidence 2246889999999999999999987775 577777776543
No 145
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=80.95 E-value=5.3 Score=41.84 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHh---hcCCCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~---~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||+-||.|.+..-+.+. |-. ..|+++|+++...+..+.... ........++.+|+.++.- .-
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence 3678999999999998877653 422 247899999998776653211 0011112244567765541 12
Q ss_pred CCccEEEecC
Q 005421 639 GSIDFVICQN 648 (697)
Q Consensus 639 g~~DLVIGGp 648 (697)
+.||+|+-+.
T Consensus 144 ~sfD~V~~~~ 153 (261)
T PLN02233 144 CYFDAITMGY 153 (261)
T ss_pred CCEeEEEEec
Confidence 4699998543
No 146
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.73 E-value=4.4 Score=40.24 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.+|||+-||.|++...+.+.+-....++++|+++......+.++...+.. ...+...|+.++.. ..+.+|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence 578999999999999888877621245789999998877777655432111 12234456655431 124688
Q ss_pred EEEe
Q 005421 643 FVIC 646 (697)
Q Consensus 643 LVIG 646 (697)
+|+.
T Consensus 124 ~I~~ 127 (239)
T PRK00216 124 AVTI 127 (239)
T ss_pred EEEE
Confidence 8874
No 147
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=80.70 E-value=1.2 Score=45.45 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=32.5
Q ss_pred ccccCC--CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 557 LKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 557 LK~~fp--~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
+.+.+| ..-+++|+|||.|+..+.+...+ ..|+..|++......++....
T Consensus 12 I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 12 IIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 444556 46789999999999887776545 457889999998887774433
No 148
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=80.69 E-value=4.1 Score=41.74 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=48.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||-||.|.++.-|.+.. +-..|+++|+++...+..+.... ...++.+|+.++.. ...+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence 45789999999999998887652 11357899999998777665321 12244566654421 13678
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+.....+
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 887665443
No 149
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=80.45 E-value=2.2 Score=47.59 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=40.4
Q ss_pred hhccccccCCCCCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 553 HLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 553 hLsvLK~~fp~~itvLSLFSGiG--GlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+++++.-+..++++||-+||+| |+..+.|-.|. ..|+++|+|+.+.+.++.+-.
T Consensus 39 ~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 39 YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp -HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence 35555555556799999999999 99999997785 468999999999999988754
No 150
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=80.34 E-value=2.4 Score=33.66 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.4
Q ss_pred HHHHHhcCCCHHHHHHHHHhh--CCCCChhhhh
Q 005421 213 TLQLLEMGFSENQVSLAIEKF--GSKTPISELA 243 (697)
Q Consensus 213 ~l~L~~MGFseeEas~AI~rc--G~da~i~eLv 243 (697)
+..|+..||++.||..|+.+. +++.++++++
T Consensus 7 ~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 7 LEALISLGYSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 458999999999999999999 7888888765
No 151
>PLN03196 MOC1-like protein; Provisional
Probab=80.18 E-value=4.7 Score=46.42 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=78.2
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhC-------CCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKG-------QDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQ 124 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~G-------e~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~ 124 (697)
.+.+.+|.++||+++.|.++|..+- +++..-.+++|.. ++-+.. + ..... ...|.+-..+
T Consensus 197 ~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~---lGv~~~---~-I~~il-----~~~P~iL~~s- 263 (487)
T PLN03196 197 STSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLES---LGLPRL---A-VARIL-----EKRPYILGFD- 263 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHH---cCCCHH---H-HHHHH-----HhCCceeEcC-
Confidence 3568899999999999999998773 2355566666653 210000 0 00000 0001110000
Q ss_pred CCCCCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCC------CCchHHHHHHHHHhhhcccccccCCCCCCCCCCCC
Q 005421 125 PKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK------DAPVYELVDFITAAQISENFEKETDDAPHDNDGTN 198 (697)
Q Consensus 125 ~~e~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~------da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~ 198 (697)
. ... ...++..|+.+|++++.+...|.++-. +..+...++|+.. ..+ ++.
T Consensus 264 l-------e~~-lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~--~lG--------------~s~ 319 (487)
T PLN03196 264 L-------EET-VKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS--KLK--------------IDP 319 (487)
T ss_pred H-------HHh-HHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHH--hhC--------------CCH
Confidence 0 000 234677888999999999998888632 2223444444420 000 000
Q ss_pred Ccc-----ccccccc----h-hhhHHHHHhcCCCHHHHHHHHHhhCC
Q 005421 199 EDK-----SDETLYG----T-MEITLQLLEMGFSENQVSLAIEKFGS 235 (697)
Q Consensus 199 Ee~-----ede~~~~----~-m~k~l~L~~MGFseeEas~AI~rcG~ 235 (697)
++. .-...++ . ..|+.+|.+|||+++|+..+|.+|=.
T Consensus 320 e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~ 366 (487)
T PLN03196 320 EDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQ 366 (487)
T ss_pred HHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence 000 0000111 1 24556899999999999999988743
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=79.90 E-value=5.3 Score=43.80 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=48.2
Q ss_pred CCCcccccCCCCChhHHHH--HHcCCceeeEEEeeCCHHHHHHHHHHHhhc-CCCCCc-c-ccccccccChhhHHHhhhc
Q 005421 563 GGLTMLSVFSGIGGAEVTL--HRLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL--~~aGf~~k~VvaVEid~~ar~t~~~~~~~~-n~~g~l-i-~~~DI~~Lt~~~I~~l~~~ 637 (697)
.+.++|||=||+|++..-+ ..-|.+ ++++|||+.+....+.+-... +....+ + ...|...+- ..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~---~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR---FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE---EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence 4688999999999886544 333543 689999999988887765433 111211 1 112222221 111112
Q ss_pred cCCccEEEecCCC
Q 005421 638 LGSIDFVICQNSV 650 (697)
Q Consensus 638 ~g~~DLVIGGpPC 650 (697)
.+.||+|+.=||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 3579999977773
No 153
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.65 E-value=2.8 Score=46.51 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~-~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.|=.++|=|||.||+-+-.-..|.+ ++++||+....+=.+.+.+..+-.+-.+.. .|++++. +.+ ..|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence 3556999999999998888888875 678999988766555544332211211222 2666665 211 149
Q ss_pred cEEEecCCC
Q 005421 642 DFVICQNSV 650 (697)
Q Consensus 642 DLVIGGpPC 650 (697)
|-|+.=||=
T Consensus 266 daIatDPPY 274 (347)
T COG1041 266 DAIATDPPY 274 (347)
T ss_pred ceEEecCCC
Confidence 999988884
No 154
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=79.42 E-value=4.9 Score=41.01 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
+-++|||=||-|.=++=|.+.|+. |.|+|+++.+...++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRL 71 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHH
Confidence 458999999999999999999996 68999999998777654
No 155
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.28 E-value=1.9 Score=48.23 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=89.4
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccC---------CCCC-------CCccccccCCCC---CC
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQES---------NSQS-------SDSLDTLFGDKD---AN 114 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s---------~s~s-------sds~~~~~~d~~---~~ 114 (697)
.|..++.|||+++.|.+||.--=- |.|-=|||||+- |=+. +... +-...++|.--- .+
T Consensus 159 ~I~~i~eMGf~R~qV~~ALRAafN-NPdRAVEYL~tG--IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~ 235 (378)
T TIGR00601 159 TIEEIMEMGYEREEVERALRAAFN-NPDRAVEYLLTG--IPEDPEQPEPVQQTAASTAAATTETPQHGSVFEQAAQGGTE 235 (378)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhC-CHHHHHHHHHhC--CCccccccccCCCcccccccccCCCCCCcchhhhhhccccc
Confidence 789999999999999999997644 999999999996 1111 0000 000000100000 00
Q ss_pred C-CCCccCCCCCCCCCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhh-----ccccccc--
Q 005421 115 S-PPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI-----SENFEKE-- 186 (697)
Q Consensus 115 ~-~~~~s~~~~~~e~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~-----a~~~~~e-- 186 (697)
+ .+....+..+-+....... +.. +..+|.- -.+.+--.++++|..+ -+|+..|-..|. ......+
T Consensus 236 ~~~~~~~~g~~~l~~Lr~~pq--f~~-lR~~vq~--NP~~L~~lLqql~~~n--P~l~q~I~~n~e~Fl~ll~~~~~~~~ 308 (378)
T TIGR00601 236 QPATEAAQGGNPLEFLRNQPQ--FQQ-LRQVVQQ--NPQLLPPLLQQIGQEN--PQLLQQISQHPEQFLQMLNEPVGELA 308 (378)
T ss_pred ccccccccCCchHHHhhcCHH--HHH-HHHHHHH--CHHHHHHHHHHHHhhC--HHHHHHHHHCHHHHHHHhcCcccccc
Confidence 0 0000001111111111111 222 2233322 3566777889999988 478888775552 2221111
Q ss_pred -CCCCCCCCCCCCCccc----cccccc-hhhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 005421 187 -TDDAPHDNDGTNEDKS----DETLYG-TMEITLQLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 187 -~dd~~~~d~~~~Ee~e----de~~~~-~m~k~l~L~~MGFseeEas~AI~rcG~d 236 (697)
..+..+......+... ...+-. +++.+..|..|||++..|-.|---|..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~ACdKN 364 (378)
T TIGR00601 309 GESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFACDKN 364 (378)
T ss_pred cccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCc
Confidence 1111110000000000 011111 4688889999999999999999999887
No 156
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=79.15 E-value=2.8 Score=40.77 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhh-ccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~-~~g~ 640 (697)
++.++|||-|+-||++..+-+.+-.-..|++||+.+.. ..++...+.+||.+... +.|..... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45999999999999998888777334568999999862 12233455788876533 23333322 1268
Q ss_pred ccEEE--ecCCCCcc
Q 005421 641 IDFVI--CQNSVPQI 653 (697)
Q Consensus 641 ~DLVI--GGpPCQ~F 653 (697)
+|+|+ |+++|++.
T Consensus 92 ~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD 106 (181)
T ss_dssp ESEEEE-------SS
T ss_pred cceeccccccCCCCc
Confidence 99998 45677765
No 157
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=78.70 E-value=4.7 Score=39.65 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=44.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~--~~g 639 (697)
+.+-+|||+=||.||++..+.+....-..|+++|+++.. + ..+..++..|+.+... +..+.. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence 346789999999999988876654322347899999853 1 1122244567765321 222211 124
Q ss_pred CccEEEec
Q 005421 640 SIDFVICQ 647 (697)
Q Consensus 640 ~~DLVIGG 647 (697)
.+|+|+..
T Consensus 98 ~~D~V~~~ 105 (188)
T TIGR00438 98 KVDVVMSD 105 (188)
T ss_pred CccEEEcC
Confidence 69999964
No 158
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=78.51 E-value=4.1 Score=42.32 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=43.0
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||-||.|=++..+.+ +|-. -.|+++|+++.-.+.-+.--.+.+......+.+|..++.-.+ ..|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~-~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPN-GKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCc-cEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence 467999999999998887765 4532 247899999987766654322221112224567777765321 469
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9998665
No 159
>PLN02672 methionine S-methyltransferase
Probab=78.11 E-value=3.8 Score=51.43 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=36.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
+.+|+||-||.|-+.+.+...+= ...|+++||++.+....+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 35899999999999999877642 13589999999999888776653
No 160
>PRK08317 hypothetical protein; Provisional
Probab=78.00 E-value=6.7 Score=38.60 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
.+.+|||+-||.|++...+.+.......++++|+++......+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 457899999999999888876531223578999998876555543
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=77.93 E-value=6.4 Score=41.40 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
++-+||+|.+|.|++...+.+.+ ....+..||+|+......+.++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 44589999999999887776654 235688999999988888877643
No 162
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=77.77 E-value=6.2 Score=41.62 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.|.+|||+-||.|=+++.+.+..=. --|+++|+++...+.-+.-..+.+..+.-++.+|..+|.=. -..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence 5899999999999999888764313 34788999998776655422221111122345676666421 13688
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+-++==+++
T Consensus 122 ~vt~~fglrnv 132 (238)
T COG2226 122 AVTISFGLRNV 132 (238)
T ss_pred EEEeeehhhcC
Confidence 88766544444
No 163
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=76.85 E-value=5.9 Score=41.10 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCCcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL-~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+-+||||=||.|...+-+ ...|-. ..|+++|+++......+.+....+.....+..+|+.++.- .-+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence 35679999999997655433 334532 2478999999888777765443222122234466655431 1146
Q ss_pred ccEEEec
Q 005421 641 IDFVICQ 647 (697)
Q Consensus 641 ~DLVIGG 647 (697)
||+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 8888744
No 164
>PRK14134 recX recombination regulator RecX; Provisional
Probab=76.67 E-value=29 Score=37.34 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=77.0
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCC---CHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCC
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 130 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~---d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~ 130 (697)
|+..|..-||+++.|..||+..=+. |-..-.+..+....-. -
T Consensus 81 lr~KL~~k~~~~~~Ie~vI~~L~e~~yldD~ryA~~yv~~~~~~-~---------------------------------- 125 (283)
T PRK14134 81 IKEKLYLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKINS-Y---------------------------------- 125 (283)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh-h----------------------------------
Confidence 8889999999999999998776333 5666666666543310 0
Q ss_pred CCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccchh
Q 005421 131 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM 210 (697)
Q Consensus 131 ~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~m 210 (697)
. .......|..-|.+.+.|..|+.+..++.-. +++--++.-.. .... . . +.+....-
T Consensus 126 ---G--~~~I~~eL~qKGI~~~iIe~al~~~~~e~e~-e~a~~l~~Kk~-~~~~-----~------~-----~~~~~k~k 182 (283)
T PRK14134 126 ---G--RNKIKYTLLNKGIKENIIIEKINNIDEEKEK-KVAYKLAEKKY-KILI-----L------S-----EKNKFKIY 182 (283)
T ss_pred ---h--HHHHHHHHHHCCCCHHHHHHHHHhCChhhHH-HHHHHHHHHhh-cccc-----c------c-----cccHHHHH
Confidence 0 3345678999999999999999987554311 11111111111 1100 0 0 00011122
Q ss_pred hhHH-HHHhcCCCHHHHHHHHHhhCC
Q 005421 211 EITL-QLLEMGFSENQVSLAIEKFGS 235 (697)
Q Consensus 211 ~k~l-~L~~MGFseeEas~AI~rcG~ 235 (697)
.|+. +|..=||+-+.+..||..+-.
T Consensus 183 ~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 183 KKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 4565 999999999999999988754
No 165
>PRK06202 hypothetical protein; Provisional
Probab=75.45 E-value=7.1 Score=39.62 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCCcccccCCCCChhHHHHHH----cCCceeeEEEeeCCHHHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~----aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
..+.+||||=||.|++...|.+ .|... .++++|+++.+....+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~ 106 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARA 106 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHh
Confidence 3567899999999998887753 46543 47899999998766554
No 166
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=75.45 E-value=5.3 Score=41.16 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=48.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||=||.|.+...+.+..-. ..|+++|+++...+..+. .+..++.+|+.++.. .+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence 4578999999999999888876211 247899999987665542 122245566654421 14688
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+.....+
T Consensus 92 ~v~~~~~l~ 100 (255)
T PRK14103 92 VVVSNAALQ 100 (255)
T ss_pred EEEEehhhh
Confidence 888766544
No 167
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=75.26 E-value=3.4 Score=46.47 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.++|||-||.|.++..|-+.+. .|+++|+++.+...-+.. +.......++..|+.+.... + ..+.+|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence 45899999999999999988764 478999999876543321 11111122445666432110 0 1257999
Q ss_pred EEecCCCCcc
Q 005421 644 VICQNSVPQI 653 (697)
Q Consensus 644 VIGGpPCQ~F 653 (697)
|+...++.-+
T Consensus 107 I~~~~~l~~l 116 (475)
T PLN02336 107 IFSNWLLMYL 116 (475)
T ss_pred EehhhhHHhC
Confidence 9988766543
No 168
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=75.04 E-value=1.1 Score=46.14 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.1
Q ss_pred CCCCcccccCCCCChh
Q 005421 562 PGGLTMLSVFSGIGGA 577 (697)
Q Consensus 562 p~~itvLSLFSGiGGl 577 (697)
.+.+..||+|||||||
T Consensus 187 ~~~LaTLDIFAGCGGL 202 (202)
T cd04708 187 ENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccceeeeecccCCC
Confidence 4678899999999996
No 169
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=74.88 E-value=5 Score=44.05 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+||||.||=||=-.=+..+++. .++++||+..+..-.+.-+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHH
Confidence 6799999999999976677788874 5999999988876555544
No 170
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.82 E-value=7.8 Score=32.29 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=44.0
Q ss_pred cccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 005421 568 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 646 (697)
Q Consensus 568 LSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIG 646 (697)
||+=||.|-....|.+. +. .++++|+++...+..+..+... +..+...|+.++.-. -+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence 56778999999999888 54 4789999999887777654322 222566787777421 257999985
Q ss_pred c
Q 005421 647 Q 647 (697)
Q Consensus 647 G 647 (697)
.
T Consensus 67 ~ 67 (95)
T PF08241_consen 67 N 67 (95)
T ss_dssp E
T ss_pred c
Confidence 3
No 171
>PRK04148 hypothetical protein; Provisional
Probab=73.51 E-value=7.6 Score=37.67 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCcccccCCCCCh-hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGG-lslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.+++++=+|-|. +...|.++|++ |.++|+++.+....+.. +..+..+||.+-+.+ .+.++|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~ 79 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK 79 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence 4789999999775 78889999985 68899999987665432 334667888765532 235677
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|----|
T Consensus 80 liysirp 86 (134)
T PRK04148 80 LIYSIRP 86 (134)
T ss_pred EEEEeCC
Confidence 7765444
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=73.38 E-value=6.5 Score=42.01 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+||.+=.|.|+++..|-+.|- .|.|+|+|+..+.+++..... ...-.++.+|+-+++-..+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence 56799999999999999999985 378999999999999875421 11122567888777643321 5677
Q ss_pred EEecCCCC
Q 005421 644 VICQNSVP 651 (697)
Q Consensus 644 VIGGpPCQ 651 (697)
|+|--|=+
T Consensus 99 vVaNlPY~ 106 (259)
T COG0030 99 VVANLPYN 106 (259)
T ss_pred EEEcCCCc
Confidence 77777755
No 173
>PRK14134 recX recombination regulator RecX; Provisional
Probab=71.90 E-value=43 Score=36.06 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=52.5
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
++-.++..|..-|.+.++|..||.+..+++...++..|+.=.- . .... .+.
T Consensus 126 G~~~I~~eL~qKGI~~~iIe~al~~~~~e~e~e~a~~l~~Kk~-~---~~~~------------------------~~~- 176 (283)
T PRK14134 126 GRNKIKYTLLNKGIKENIIIEKINNIDEEKEKKVAYKLAEKKY-K---ILIL------------------------SEK- 176 (283)
T ss_pred hHHHHHHHHHHCCCCHHHHHHHHHhCChhhHHHHHHHHHHHhh-c---cccc------------------------ccc-
Confidence 3455788899999999999999999765543333333332110 0 0000 000
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCC
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 163 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~ 163 (697)
+......+.+.+|+.=||+-+.|..||+++-.
T Consensus 177 --~~~k~k~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 177 --NKFKIYKKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred --cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 00001456778999999999999999988753
No 174
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=71.40 E-value=7.4 Score=39.98 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=56.7
Q ss_pred ccchhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccccc
Q 005421 548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL 626 (697)
Q Consensus 548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~L 626 (697)
..++..+..|+ ...+.+||++-||.|=++.-+-.+ | +.-.|++||+++.....-+..+...+.....+..+|...-
T Consensus 59 ~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 45566666666 456899999999999776666554 4 2224789999998776666665544322223455665432
Q ss_pred ChhhHHHhhhccCCccEEEecCCCCc
Q 005421 627 TTKKFESLIHKLGSIDFVICQNSVPQ 652 (697)
Q Consensus 627 t~~~I~~l~~~~g~~DLVIGGpPCQ~ 652 (697)
- ...++||.|+-+.-|..
T Consensus 136 ~--------~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 136 W--------PEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp T--------GGG-SEEEEEESSBBSS
T ss_pred c--------ccCCCcCEEEEeeccch
Confidence 1 13468998887776654
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=71.38 E-value=7.9 Score=44.23 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCcccccCCCCChhHHHHHHcC----CceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aG----f~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
...|+++=||-|-|....-+|| -. ..|+|||.++.|..+++..=...+- ....++.+|++++....
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 4679999999999987665555 22 3579999999998887543111111 12335678999887542
Q ss_pred CCccEEE----ecCCCCcc
Q 005421 639 GSIDFVI----CQNSVPQI 653 (697)
Q Consensus 639 g~~DLVI----GGpPCQ~F 653 (697)
.+|||| |.+=|.-.
T Consensus 258 -kvDIIVSElLGsfg~nEl 275 (448)
T PF05185_consen 258 -KVDIIVSELLGSFGDNEL 275 (448)
T ss_dssp --EEEEEE---BTTBTTTS
T ss_pred -ceeEEEEeccCCcccccc
Confidence 689886 54444443
No 176
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=71.12 E-value=11 Score=38.31 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~ 607 (697)
+.+-+|||+=||.|-+...|.+. +. ..+.++|+++.+....+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence 45668999999999999999876 32 2478999999998887753
No 177
>PRK06922 hypothetical protein; Provisional
Probab=70.35 E-value=7.7 Score=46.50 Aligned_cols=85 Identities=20% Similarity=0.169 Sum_probs=52.7
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+.++.+ +.+|||+.||.|.+...+.+.. +-..++++|+++.+....+...... .....++.+|+.++.. .+
T Consensus 413 i~d~~~-g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f----- 483 (677)
T PRK06922 413 ILDYIK-GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF----- 483 (677)
T ss_pred HhhhcC-CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence 344443 6789999999999987776542 2235789999999877766532211 1111234466655431 11
Q ss_pred ccCCccEEEecCCC
Q 005421 637 KLGSIDFVICQNSV 650 (697)
Q Consensus 637 ~~g~~DLVIGGpPC 650 (697)
..+.||+|+..++-
T Consensus 484 edeSFDvVVsn~vL 497 (677)
T PRK06922 484 EKESVDTIVYSSIL 497 (677)
T ss_pred CCCCEEEEEEchHH
Confidence 12579999977653
No 178
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=70.04 E-value=10 Score=39.12 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCcccccccccc
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQAL 626 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~L 626 (697)
.+.+.+||||=||.|.+...+.+. ..+--.++++|+++......+......+.. ...++.+|+.++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 346678999999999988777652 111124789999998887766644322111 122345666544
No 179
>PRK14136 recX recombination regulator RecX; Provisional
Probab=69.73 E-value=50 Score=36.39 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCC---CHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCC
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 130 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~---d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~ 130 (697)
|+.+|...||+++.|..||+.+=+. |-....+.++.+.. .+
T Consensus 182 Lr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~-~k----------------------------------- 225 (309)
T PRK14136 182 LARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRA-SR----------------------------------- 225 (309)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh-hc-----------------------------------
Confidence 6777777777777777776655332 55555555554311 00
Q ss_pred CCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccchh
Q 005421 131 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM 210 (697)
Q Consensus 131 ~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~m 210 (697)
-. .......|..-|.+.+.|..|++++.++ .. +++--++.-.. .... . + ....
T Consensus 226 --kG--p~rIrqELrQKGId~eLIEqALeeieED-E~-E~A~~L~eKK~-~~~~---------~--------d---~kek 278 (309)
T PRK14136 226 --VG--SARIVSELKRHAVGDALVESVGAQLRET-EF-ERAQAVWRKKF-GALP---------Q--------T---PAER 278 (309)
T ss_pred --hh--HHHHHHHHHHcCCCHHHHHHHHHhccHh-HH-HHHHHHHHHHh-cccC---------c--------C---HHHH
Confidence 00 3345678999999999999999988432 12 22222222111 1100 0 0 0112
Q ss_pred hhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421 211 EITL-QLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 211 ~k~l-~L~~MGFseeEas~AI~rcG~d 236 (697)
.|.. +|..-||+-+.+..+|..+..+
T Consensus 279 ~K~iRfL~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 279 AKQARFLAARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhchhc
Confidence 3444 9999999999999999876543
No 180
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=68.05 E-value=15 Score=40.71 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~-~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+-+|||+.|+.||=+.-+-.+.-+ -..|+|+|+++.-.+.++.+-...+.....+...|-..+... ....+.||
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-----~~~~~~fD 231 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-----LPGGEKFD 231 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-----ccccCcCc
Confidence 588999999999998777766533 134699999998877887755443322222333333322211 11112499
Q ss_pred EEEecCCCCccccC
Q 005421 643 FVICQNSVPQIPNS 656 (697)
Q Consensus 643 LVIGGpPCQ~FS~a 656 (697)
-|.-=+||.+....
T Consensus 232 ~iLlDaPCSg~G~i 245 (355)
T COG0144 232 RILLDAPCSGTGVI 245 (355)
T ss_pred EEEECCCCCCCccc
Confidence 99999999998875
No 181
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=67.51 E-value=10 Score=38.63 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.++.+|+.+..++.++++++-..+
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~aL 183 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRKAL 183 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 457889999999999999999999987777888776544
No 182
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=67.32 E-value=14 Score=38.75 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~ 605 (697)
.+-+||..-||-|==.+-|...|+. |++||+++.|...+.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF 82 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence 4568999988888878889999985 689999999977653
No 183
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=67.22 E-value=7.8 Score=35.78 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 603 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t 603 (697)
.+.+.+|||+=||.|.+...++..|+. ++++|+++.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence 356789999999999999999999983 6789999986533
No 184
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=67.02 E-value=82 Score=29.08 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=62.3
Q ss_pred ccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCchh
Q 005421 59 IGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEG 135 (697)
Q Consensus 59 i~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s~~ 135 (697)
..-||+++.|..||+.. |==|-....+..+....-.+. -.
T Consensus 2 ~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~------------------------------------~G- 44 (121)
T PF02631_consen 2 KRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG------------------------------------KG- 44 (121)
T ss_dssp HHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---------------------------------------
T ss_pred cccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc------------------------------------cc-
Confidence 35699999999998776 544666666666664442100 00
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccchhhhHH-
Q 005421 136 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL- 214 (697)
Q Consensus 136 ~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~m~k~l- 214 (697)
.......|..-|.+.+.|..|++ +....+.+...+- -....... ......-.|+.
T Consensus 45 -~~~I~~~L~~kGi~~~~i~~~l~---~~~~~e~a~~~~~-kk~~~~~~-------------------~~~~~~~~K~~~ 100 (121)
T PF02631_consen 45 -PRRIRQKLKQKGIDREIIEEALE---EYDEEEEALELAE-KKYRRYRK-------------------PSDRKRKQKLIR 100 (121)
T ss_dssp -HHHHHHHHHHTT--HHHHHHHHT---CS-HHHHHHHHHH-HHHHHTTT-------------------S-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCChHHHHHHHH---HhhHHHHHHHHHH-HHHhcccC-------------------CCCHHHHHHHHH
Confidence 34566889999999999999998 2222233222222 11111100 00011235665
Q ss_pred HHHhcCCCHHHHHHHHHh
Q 005421 215 QLLEMGFSENQVSLAIEK 232 (697)
Q Consensus 215 ~L~~MGFseeEas~AI~r 232 (697)
+|+.-||+.+.+..||.+
T Consensus 101 ~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 101 FLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHTT--HHHHHHHCHH
T ss_pred HHHHCCCCHHHHHHHHhh
Confidence 999999999999999887
No 185
>PRK04266 fibrillarin; Provisional
Probab=66.48 E-value=17 Score=37.69 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=46.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|+++..+.+. | . ..|+++|+++.....+...-.. .+....+.+|+.+.. ....+ ...|
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~--~~~~l---~~~~ 142 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-E-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPE--RYAHV---VEKV 142 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-C-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcc--hhhhc---cccC
Confidence 4678999999999999888764 2 1 2589999999765544332111 122234567876421 00111 1358
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+-..
T Consensus 143 D~i~~d~ 149 (226)
T PRK04266 143 DVIYQDV 149 (226)
T ss_pred CEEEECC
Confidence 9988543
No 186
>PRK03612 spermidine synthase; Provisional
Probab=66.30 E-value=13 Score=43.15 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH--HHhhcCC-----CCCccccccccccChhhHHHh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR--WWESSGQ-----TGELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~--~~~~~n~-----~g~li~~~DI~~Lt~~~I~~l 634 (697)
+++-+||++-+|.|++...+.+.+ .++.+..||+|+...+..+. ++...|. +...++.+|..+. +.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~----l~-- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW----LR-- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH----HH--
Confidence 445689999999999987777654 23568999999999988887 2222111 1222344555432 11
Q ss_pred hhccCCccEEEecCCC
Q 005421 635 IHKLGSIDFVICQNSV 650 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPC 650 (697)
...+.+|+|+.-+|-
T Consensus 369 -~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 -KLAEKFDVIIVDLPD 383 (521)
T ss_pred -hCCCCCCEEEEeCCC
Confidence 112579999988764
No 187
>PRK14137 recX recombination regulator RecX; Provisional
Probab=66.10 E-value=70 Score=32.84 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=72.7
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCC---CHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCC
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 130 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~---d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~ 130 (697)
|+..|..-||+++.|..||+..=+. |-....+. |... . +
T Consensus 60 Lr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~---~~~~--k-------------------------~-------- 101 (195)
T PRK14137 60 LRAKLERRSEDEALVTEVLERVQELGYQDDAQVARA---ENSR--R-------------------------G-------- 101 (195)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHh--c-------------------------C--------
Confidence 7888888888888888888766433 44454443 1100 0 0
Q ss_pred CCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccchh
Q 005421 131 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM 210 (697)
Q Consensus 131 ~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~m 210 (697)
-. .......|..-|.+.+.|..||.++..+...+.+...+- -.. .... . .. ...
T Consensus 102 --~G--p~rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~-KK~-~~~~---------~--------~~---~~k 155 (195)
T PRK14137 102 --VG--ALRVRQTLRRRGVEETLIEETLAARDPQEEQQEARNLLE-RRW-SSFA---------R--------KR---DPR 155 (195)
T ss_pred --ch--HHHHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHH-Hhc-cccC---------c--------ch---hHH
Confidence 00 334567889999999999999998754432233333321 111 1100 0 00 112
Q ss_pred hhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 005421 211 EITL-QLLEMGFSENQVSLAIEKFGSK 236 (697)
Q Consensus 211 ~k~l-~L~~MGFseeEas~AI~rcG~d 236 (697)
.|+. +|..=||+-+.+..||..+-..
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 4554 9999999999999999887554
No 188
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=66.00 E-value=18 Score=39.53 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=47.8
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 645 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVI 645 (697)
+|+||=||.|=+.+-+.+..= ..-+.-||+|..|...-+.++..++-.+..++..|+-. .+ .+.||+||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii 229 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII 229 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence 899999999977776665542 23456799999999888887754322222334444321 11 24799999
Q ss_pred ecCC
Q 005421 646 CQNS 649 (697)
Q Consensus 646 GGpP 649 (697)
--||
T Consensus 230 sNPP 233 (300)
T COG2813 230 SNPP 233 (300)
T ss_pred eCCC
Confidence 7666
No 189
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=65.59 E-value=11 Score=38.79 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=50.5
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 632 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~ 632 (697)
|..+.++-+.+-+||||=||-|-+=.-|.. .+. ..+++|||+......-+ .|..++.+|+.+ .+.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~-------rGv~Viq~Dld~----gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVA-------RGVSVIQGDLDE----GLA 69 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHH-------cCCCEEECCHHH----hHh
Confidence 344556677789999999999988666655 454 36889999987554432 355577788753 222
Q ss_pred HhhhccCCccEEE
Q 005421 633 SLIHKLGSIDFVI 645 (697)
Q Consensus 633 ~l~~~~g~~DLVI 645 (697)
.+ .-+.||.||
T Consensus 70 ~f--~d~sFD~VI 80 (193)
T PF07021_consen 70 DF--PDQSFDYVI 80 (193)
T ss_pred hC--CCCCccEEe
Confidence 11 125688877
No 190
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.34 E-value=8 Score=43.39 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=33.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
....+..++.|||++++|..||.-.=.+ -+-=||||++.
T Consensus 156 ~e~~I~~i~eMGf~R~qV~~ALRAafNN--PdRAVEYL~tG 194 (378)
T TIGR00601 156 RETTIEEIMEMGYEREEVERALRAAFNN--PDRAVEYLLTG 194 (378)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCC--HHHHHHHHHhC
Confidence 6778999999999999999999876554 37778999976
No 191
>PRK13699 putative methylase; Provisional
Probab=64.42 E-value=9.7 Score=39.46 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
.+=.|||-|+|.|..-++..++|-+ .+++|+++...++....
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHHH
Confidence 4556999999999999999999965 57899998776655443
No 192
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=64.26 E-value=17 Score=39.55 Aligned_cols=36 Identities=31% Similarity=0.246 Sum_probs=30.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 601 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar 601 (697)
+-+|||+=||.|.+...+-..|.. .|+++|.++...
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l 158 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFL 158 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 468999999999999998888864 488999998654
No 193
>PLN02366 spermidine synthase
Probab=63.21 E-value=16 Score=39.66 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+++-+||++=+|.||+...+.+.. .++.|..||||+...+..+.|+...+ .+...++.+|..+.- +.. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l----~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL----KNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH----hhc--c
Confidence 456789999899999887777662 34568889999998888888875421 112223445543211 100 1
Q ss_pred cCCccEEEecC
Q 005421 638 LGSIDFVICQN 648 (697)
Q Consensus 638 ~g~~DLVIGGp 648 (697)
-+.+|+||.-.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 24699998743
No 194
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=63.12 E-value=12 Score=40.39 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
++++||.=||.|=++.-|-++|. .|.++|..+.+..+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 68899999999999999999995 478999999999999865
No 195
>PTZ00146 fibrillarin; Provisional
Probab=62.77 E-value=20 Score=39.03 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+..+.+||||-||.|+++.-+-.. |-. -.|++||+++...+-+...-.. .+....+++|++.- ..+.. ..+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p--~~y~~---~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYP--QKYRM---LVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccCh--hhhhc---ccC
Confidence 345689999999999998777654 211 2589999997543222221111 12223456777632 11111 124
Q ss_pred CccEEEecC
Q 005421 640 SIDFVICQN 648 (697)
Q Consensus 640 ~~DLVIGGp 648 (697)
.||+|+--.
T Consensus 202 ~vDvV~~Dv 210 (293)
T PTZ00146 202 MVDVIFADV 210 (293)
T ss_pred CCCEEEEeC
Confidence 689887655
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=62.31 E-value=20 Score=36.70 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc--C
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL--G 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~--g 639 (697)
..++.||.|=.|.|=++.++-+.|++-..+.++|+++.-...|... .++..++.+|.-.+.. ..+++ .
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~-----~l~e~~gq 116 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRT-----TLGEHKGQ 116 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHH-----HHhhcCCC
Confidence 4578899999999999999999999999999999999987777653 3455567777665542 22222 3
Q ss_pred CccEEEecCCCCccccC
Q 005421 640 SIDFVICQNSVPQIPNS 656 (697)
Q Consensus 640 ~~DLVIGGpPCQ~FS~a 656 (697)
.||.||.|-|--+|+..
T Consensus 117 ~~D~viS~lPll~~P~~ 133 (194)
T COG3963 117 FFDSVISGLPLLNFPMH 133 (194)
T ss_pred eeeeEEeccccccCcHH
Confidence 58999999999998753
No 197
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=61.19 E-value=24 Score=36.02 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+||||=||.|.+...+.+.. .+-..++++|+++......+......... ...++.+|+.++.. .
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------K 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----------C
Confidence 456789999999999988876542 21124789999998887777654432111 12345677765531 3
Q ss_pred CccEEEecCCCC
Q 005421 640 SIDFVICQNSVP 651 (697)
Q Consensus 640 ~~DLVIGGpPCQ 651 (697)
.+|+|+.....+
T Consensus 122 ~~d~v~~~~~l~ 133 (239)
T TIGR00740 122 NASMVILNFTLQ 133 (239)
T ss_pred CCCEEeeecchh
Confidence 467777655544
No 198
>PLN02476 O-methyltransferase
Probab=60.90 E-value=24 Score=38.05 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred hhhhccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccCh
Q 005421 551 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT 628 (697)
Q Consensus 551 ~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~ 628 (697)
+.+|..|-.+.+ .-++|++.+|+|..++.+-++ +=. -.|+++|+++...+..+.+|.+.+... ..++.+|..+
T Consensus 107 g~lL~~L~~~~~-ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--- 181 (278)
T PLN02476 107 AQLLAMLVQILG-AERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--- 181 (278)
T ss_pred HHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH---
Confidence 334444444333 457999999999998877652 111 137899999999999999998765432 1233455443
Q ss_pred hhHHHhhh--ccCCccEEEecCC
Q 005421 629 KKFESLIH--KLGSIDFVICQNS 649 (697)
Q Consensus 629 ~~I~~l~~--~~g~~DLVIGGpP 649 (697)
.+..+.. ..+.||+|+=..+
T Consensus 182 -~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 182 -SLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred -HHHHHHhcccCCCCCEEEECCC
Confidence 2222221 1357897765443
No 199
>PRK11524 putative methyltransferase; Provisional
Probab=60.82 E-value=11 Score=40.06 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=33.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
.|=.|||-|+|.|.-.++.+++|= ..+++|+++..+.+.+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence 345599999999999999999994 46899999987765543
No 200
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=60.12 E-value=18 Score=37.95 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCce--eeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKL--KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~--k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
..+|||+=||.|.+...|....-.. ..++++|+++.+.+..+.. .+...+..+|+.++.-. .+.|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~--------~~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA--------DQSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc--------CCce
Confidence 4679999999999988876542110 1478999999987766432 22223456777665421 2468
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 88874
No 201
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=59.90 E-value=31 Score=35.41 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=41.1
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 612 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n 612 (697)
|+.|... .+-+++|+=||+|+.++-+-.+|=. -.|+|+|-++.+.+..+.+-.+.+
T Consensus 27 ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence 4555432 3457999988888877766666743 467999999999999998766543
No 202
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=59.79 E-value=6.6 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=20.7
Q ss_pred hhhhhhccCCCChHHHHHHHH---HhCCC
Q 005421 53 NLRSSFIGMGFSPSLVDKVIE---EKGQD 78 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIq---e~Ge~ 78 (697)
.||++++.|||+++.|.-+|+ |+|..
T Consensus 323 dvidKv~~MGf~rDqV~a~v~rl~E~GQ~ 351 (358)
T PF07223_consen 323 DVIDKVASMGFRRDQVRATVRRLTENGQP 351 (358)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhcCCc
Confidence 389999999999999975554 55653
No 203
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=58.45 E-value=21 Score=36.62 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhC---CCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLG---KDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G---~da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.++.+|+.++- .+.++++++-..+
T Consensus 152 ~~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aL 193 (197)
T PRK14603 152 AEDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIRKAL 193 (197)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45788999999999999999999983 3445677765543
No 204
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=58.22 E-value=21 Score=32.93 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=37.1
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
++||+-||.|-.++.+.+.|-. ..++++|.++.+...++.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHH
Confidence 5899999999999999988854 2589999999999888887653
No 205
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=58.20 E-value=27 Score=34.90 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=31.2
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
+|||+=||.|++...+-+..-.. .+.++|+++......+....
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHH
Confidence 58999999999887776543112 36789999888766666543
No 206
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=57.74 E-value=12 Score=36.86 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=33.5
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~ 605 (697)
+.+..+.+.++||+-||.|.+...+.+.+. ..++++|+++.+....+
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACV 53 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHH
Confidence 334445567899999999999888865432 13578999988765543
No 207
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=57.16 E-value=35 Score=37.34 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 601 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar 601 (697)
+-+|||+=||.|.+...+...|.. .|+++|.++...
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml 157 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFL 157 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 468999999999999999888863 578999998654
No 208
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=55.69 E-value=14 Score=38.15 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~ 604 (697)
.+-+||..-||-|=--+-|...|++ |+++|+++.|+..+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQA 75 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHH
Confidence 3567999999998777788899975 68999999997765
No 209
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=55.38 E-value=21 Score=36.36 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC-CCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGK-DAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~-da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.++.+|+++.-. +.++++|+-..+
T Consensus 143 ~~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~AL 182 (188)
T PRK14606 143 YHESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEAL 182 (188)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 567889999999999999999999954 556677765543
No 210
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=54.91 E-value=27 Score=37.38 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKF 233 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rc 233 (697)
.|+..|.++||+++|+..++.+|
T Consensus 245 ~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 245 PKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHHHhC
Confidence 55668999999999999888887
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=53.94 E-value=25 Score=38.28 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=47.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-++||.=||.||.+..+-+..=+--.|+++|.|+.+....+..... ...-.++.+|..++.. .+.. ..+.+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~-~l~~---~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE-VLAE---GLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH-HHHc---CCCccCE
Confidence 45799999999999999887631112489999999998777653321 1112234566665531 1111 1236887
Q ss_pred EEe
Q 005421 644 VIC 646 (697)
Q Consensus 644 VIG 646 (697)
|+-
T Consensus 94 Il~ 96 (296)
T PRK00050 94 ILL 96 (296)
T ss_pred EEE
Confidence 764
No 212
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.39 E-value=25 Score=35.86 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~--da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.+|.+|+.+.-. +.++++|+...+
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aL 187 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEAL 187 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 467889999999999999999999843 456777776544
No 213
>PRK04457 spermidine synthase; Provisional
Probab=53.02 E-value=22 Score=37.45 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=48.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+||+|=+|.|.+...+.+.- +-..+.+||+|+......+.|+...+. +...++.+|..+. +.. ..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~----l~~---~~~~y 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY----IAV---HRHST 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH----HHh---CCCCC
Confidence 34578999888888877775542 223478999999999998887753211 2223455666533 111 12479
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+-
T Consensus 138 D~I~~ 142 (262)
T PRK04457 138 DVILV 142 (262)
T ss_pred CEEEE
Confidence 99884
No 214
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=52.56 E-value=29 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCcccccCCCCChhHHHHHH-cCCceeeEEEeeCCHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~-aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
.+.+|||+=||.|++..-+.+ .|. .|+++|+++......+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~ 208 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQE 208 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH
Confidence 467899999999999887765 465 36889999988766654
No 215
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=52.20 E-value=28 Score=35.80 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhC---CCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLG---KDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G---~da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.++.+|+.++- ++.++++|+-..+
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~AL 196 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAAL 196 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 46788999999999999999999983 3445677766544
No 216
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.68 E-value=30 Score=35.91 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=49.2
Q ss_pred CCCCCcccccCCCCChhHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 561 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlsl-GL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
|..+.+||||-|=-||-+. +.+.+|=..+ |++||+.+.. ..++...+.+||+.-+. +..+....+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~-----------~~~~V~~iq~d~~~~~~--~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK-----------PIPGVIFLQGDITDEDT--LEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc-----------cCCCceEEeeeccCccH--HHHHHHHcC
Confidence 5568999999999999985 6667774432 7899999974 24556667899986543 223333333
Q ss_pred --CccEEE
Q 005421 640 --SIDFVI 645 (697)
Q Consensus 640 --~~DLVI 645 (697)
.+|+|+
T Consensus 109 ~~~~DvV~ 116 (205)
T COG0293 109 GAPVDVVL 116 (205)
T ss_pred CCCcceEE
Confidence 369888
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=51.60 E-value=7.3 Score=43.22 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCcccCCCChHHHHHhhh-hhhccccchhhhccccccC-CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH
Q 005421 525 NHTQAAGNSLTARLESLR-HCFQTDTLGYHLSVLKSMF-PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 602 (697)
Q Consensus 525 ~~Tr~~~ls~teR~k~Lg-nsfqvdti~~hLsvLK~~f-p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~ 602 (697)
||..+.++.+.+|+++-+ +..+- .-|+=|+|=+.| +.+--+++|=||=||=-+=..+|||. -++.+||.++..+
T Consensus 79 HYN~~~e~g~e~Rq~S~Ii~lRnf--NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~ 154 (389)
T KOG1975|consen 79 HYNERTEVGREKRQRSPIIFLRNF--NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSIN 154 (389)
T ss_pred HHHHHHHHhHhhhccCceeehhhh--hHHHHHHHHHHHhccccccceeccCCcccHhHhhhhccc--ceEeeehhhccHH
Confidence 666666777777776321 11100 112334444433 34455788999999998999999995 5889999987665
Q ss_pred HHHHHHhhc-CC-----CCCccccccccccChhhHHHhhhccC-CccEEEecCCCC
Q 005421 603 ILKRWWESS-GQ-----TGELVQIEDIQALTTKKFESLIHKLG-SIDFVICQNSVP 651 (697)
Q Consensus 603 t~~~~~~~~-n~-----~g~li~~~DI~~Lt~~~I~~l~~~~g-~~DLVIGGpPCQ 651 (697)
-.+.-+... +. ....++.+|-... .|..++.... .||||...+-|-
T Consensus 155 qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~---~l~d~~e~~dp~fDivScQF~~H 207 (389)
T KOG1975|consen 155 QARKRYRDMKNRFKKFIFTAVFIAADCFKE---RLMDLLEFKDPRFDIVSCQFAFH 207 (389)
T ss_pred HHHHHHHHHHhhhhcccceeEEEEeccchh---HHHHhccCCCCCcceeeeeeeEe
Confidence 444322211 11 1123445565433 3333332123 399998555443
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=50.59 E-value=41 Score=36.80 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=58.2
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChhhHHHhhh
Q 005421 558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~~I~~l~~ 636 (697)
|.-.+-+-+||..==|.|-+++.+-.+| +.|+|||+|+.-..-+..-...+..-+.+ ++.+|.-+.+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 3333446679999999999999999999 46899999998877777655544322222 4556765443
Q ss_pred ccCCccEEEecCCCCcc
Q 005421 637 KLGSIDFVICQNSVPQI 653 (697)
Q Consensus 637 ~~g~~DLVIGGpPCQ~F 653 (697)
+.-+|++|---|-|=-
T Consensus 121 -~P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQIS 136 (315)
T ss_pred -CcccceeeccCCcccc
Confidence 2457888887777743
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.98 E-value=43 Score=35.62 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=59.6
Q ss_pred CcccccCCCCChhHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc--cCC
Q 005421 565 LTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGS 640 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~--~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~--~g~ 640 (697)
.--|--|+|.+-+.+|+. .-| .|+++|+|+.+.++...+|... |+.-.+.=|..-..+.|.+++.+ .+.
T Consensus 77 ~lelGvfTGySaL~~Alalp~dG----rv~a~eid~~~~~~~~~~~k~a---gv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 77 TLELGVFTGYSALAVALALPEDG----RVVAIEIDADAYEIGLELVKLA---GVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred EEEEecccCHHHHHHHHhcCCCc----eEEEEecChHHHHHhHHHHHhc---cccceeeeeecchhhhHHHHHhcCCCCc
Confidence 334666999999988886 344 3789999999988887777644 22111122333344556666543 466
Q ss_pred ccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcc
Q 005421 641 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 694 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~ 694 (697)
||+++ . + .|+++.. ..|-|.|+.+|+
T Consensus 150 fDfaF----------v---------------D--adK~nY~-~y~e~~l~Llr~ 175 (237)
T KOG1663|consen 150 FDFAF----------V---------------D--ADKDNYS-NYYERLLRLLRV 175 (237)
T ss_pred eeEEE----------E---------------c--cchHHHH-HHHHHHHhhccc
Confidence 77664 1 1 2445443 777888888775
No 220
>PRK14136 recX recombination regulator RecX; Provisional
Probab=48.51 E-value=59 Score=35.84 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=51.1
Q ss_pred chhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCC
Q 005421 51 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 130 (697)
Q Consensus 51 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~ 130 (697)
.-+++..|..-|.+.++|..||+++.++..+ ++..|+.=.- ... ....
T Consensus 228 p~rIrqELrQKGId~eLIEqALeeieEDE~E-~A~~L~eKK~----~~~--------------------------~~d~- 275 (309)
T PRK14136 228 SARIVSELKRHAVGDALVESVGAQLRETEFE-RAQAVWRKKF----GAL--------------------------PQTP- 275 (309)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccHhHHH-HHHHHHHHHh----ccc--------------------------CcCH-
Confidence 3457788999999999999999988433322 3333332111 000 0000
Q ss_pred CCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 131 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 131 ~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
.+ .-+.+.+|+.-||+-+.|..+|+.+.++
T Consensus 276 --ke--k~K~iRfL~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 276 --AE--RAKQARFLAARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred --HH--HHHHHHHHHHCCCCHHHHHHHHHhchhc
Confidence 11 4566889999999999999999987664
No 221
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=48.34 E-value=25 Score=37.62 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL 161 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~ 161 (697)
...++..|..+||++++|.+++.+|
T Consensus 243 l~~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 243 LKPKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHhC
Confidence 5678899999999999999999884
No 222
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=48.14 E-value=33 Score=34.98 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~--da~~~~Lld~I~ 175 (697)
.++.+..|+..||++.++.+|+.+++. +.++++++-..+
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aL 188 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLAL 188 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 456889999999999999999999984 445677765544
No 223
>PLN03196 MOC1-like protein; Provisional
Probab=47.76 E-value=71 Score=37.06 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.2
Q ss_pred hhhhhhccCCCChHHHHHHHHHhC
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKG 76 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~G 76 (697)
++++.|.+.||+.+-|.++|..+-
T Consensus 126 Pvl~fL~~lG~s~~~i~~lI~~~P 149 (487)
T PLN03196 126 PVLDYLEKLGVTRSSLPELLRRYP 149 (487)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 478999999999999999999873
No 224
>PLN03075 nicotianamine synthase; Provisional
Probab=47.63 E-value=94 Score=34.02 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=46.1
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHHhh-cCC-CCCccccccccccChhhHHHhhhccC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWES-SGQ-TGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~~~-~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
.+-+|+++=||.||++.-+-.++ ++--.+..+|+|+.+...-+++... ..- ....+..+|+.++.. ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------ccC
Confidence 34679999888888865543322 2223578999999988877776532 111 112244566655421 136
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
+||+|+-
T Consensus 195 ~FDlVF~ 201 (296)
T PLN03075 195 EYDVVFL 201 (296)
T ss_pred CcCEEEE
Confidence 7999983
No 225
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=47.02 E-value=40 Score=38.06 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~ 606 (697)
.+.+|||+=||.|++.+.+... |. .|+++|+++.+....+.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALE 307 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence 4678999999999988777653 54 37899999887765544
No 226
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=46.39 E-value=45 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=30.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
..|.+||||=||-||+.+-+.+. |.+ |.++.+++.-..-.+..-.
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIR 106 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHH
Confidence 45789999999999999877766 864 6789999887665554433
No 227
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=46.26 E-value=36 Score=34.67 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDF 173 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~ 173 (697)
.++.+..|+.+||++.++.+|+.+.. +.++++|+-.
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eelir~ 177 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASCQ-STGTSELIKE 177 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHHHH
Confidence 45688999999999999999999984 4556776654
No 228
>PRK01581 speE spermidine synthase; Validated
Probab=46.01 E-value=84 Score=35.54 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH-----Hhhc--CCCCCccccccccccChhhHHHh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW-----WESS--GQTGELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~-----~~~~--n~~g~li~~~DI~~Lt~~~I~~l 634 (697)
++.-+||.|=+|.|++...+-+.+ .++.|+.||||+...+..+.+ |.+. ..+...++++|..+.- .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL----~-- 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL----S-- 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----H--
Confidence 455689998778777655454433 345689999999988877753 1111 1122223445554321 1
Q ss_pred hhccCCccEEEecCC
Q 005421 635 IHKLGSIDFVICQNS 649 (697)
Q Consensus 635 ~~~~g~~DLVIGGpP 649 (697)
...+.+|+||.-.|
T Consensus 222 -~~~~~YDVIIvDl~ 235 (374)
T PRK01581 222 -SPSSLYDVIIIDFP 235 (374)
T ss_pred -hcCCCccEEEEcCC
Confidence 12357999998754
No 229
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=45.97 E-value=39 Score=38.23 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+..+||+=||.|.+.+.+-+.. +-..++++|+++.........-...+-....++.+|+..+.. .+ ..+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC-----CCCcee
Confidence 35679999999999998888764 224689999998775544433222221122234566654321 11 236799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
.|.--+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 988777764
No 230
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=45.86 E-value=12 Score=40.06 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=60.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH-HHhhcCCC-CCccccccccccChhhHHHhhhcc--
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR-WWESSGQT-GELVQIEDIQALTTKKFESLIHKL-- 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~-~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~-- 638 (697)
.+-+|||-+.|.|=.++..-+.|-. .|..||.|+.....-+. =|...-+. ...++.+|+-++ +..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~--------V~~~~D 203 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV--------VKDFDD 203 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH--------HhcCCc
Confidence 4788999999999888888888863 37889999875322111 01110011 112345555332 2333
Q ss_pred CCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHH
Q 005421 639 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 691 (697)
Q Consensus 639 g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~ 691 (697)
..||.||.-|| -||.++. |.. -.+|.|++||++.
T Consensus 204 ~sfDaIiHDPP--RfS~Age---------------LYs--eefY~El~RiLkr 237 (287)
T COG2521 204 ESFDAIIHDPP--RFSLAGE---------------LYS--EEFYRELYRILKR 237 (287)
T ss_pred cccceEeeCCC--ccchhhh---------------HhH--HHHHHHHHHHcCc
Confidence 35999999999 4555421 111 2378889998763
No 231
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=45.44 E-value=51 Score=35.29 Aligned_cols=87 Identities=10% Similarity=-0.047 Sum_probs=51.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc--cccccccccChhhHHHhhhcc-
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL--VQIEDIQALTTKKFESLIHKL- 638 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l--i~~~DI~~Lt~~~I~~l~~~~- 638 (697)
+.+.++|||=||.|-.+..|-+++-....++++|+++......+..-... .++.. .+.+|+.+.. .+....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~-----~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPL-----ALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchh-----hhhcccc
Confidence 34578999999999999988877421124789999998754443322111 12221 2457776421 111111
Q ss_pred -CCccEEEecCCCCccc
Q 005421 639 -GSIDFVICQNSVPQIP 654 (697)
Q Consensus 639 -g~~DLVIGGpPCQ~FS 654 (697)
+...+++-|+++..|.
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 2455777777777765
No 232
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=44.92 E-value=48 Score=30.61 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=43.0
Q ss_pred chhhhhhhccCCCChHHHHHHHHHhCCCC-HHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 51 GSNLRSSFIGMGFSPSLVDKVIEEKGQDN-VDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 51 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d-~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
.-.++..|..-|.+.+.|..|++ +.+ .+.+++.+.. .--.....
T Consensus 45 ~~~I~~~L~~kGi~~~~i~~~l~---~~~~~e~a~~~~~k-k~~~~~~~------------------------------- 89 (121)
T PF02631_consen 45 PRRIRQKLKQKGIDREIIEEALE---EYDEEEEALELAEK-KYRRYRKP------------------------------- 89 (121)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHT---CS-HHHHHHHHHHH-HHHHTTTS-------------------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHH---HhhHHHHHHHHHHH-HHhcccCC-------------------------------
Confidence 34477889999999999999998 333 3333333322 11110000
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHH
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDK 160 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~ 160 (697)
.......+.+.+|+.-||+.++|..||++
T Consensus 90 --~~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 90 --SDRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp ---CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred --CCHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 00112677889999999999999999988
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=44.85 E-value=20 Score=37.42 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||-||.|=.+++--++|-. -|++.|+++.+...++.+ ..+.+. .|.-+..+ +++..+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lN---a~angv-----~i~~~~~d----~~g~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLN---AAANGV-----SILFTHAD----LIGSPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcc---hhhccc-----eeEEeecc----ccCCCccee
Confidence 4688999999999999999999974 488999999988777652 222332 12222211 122346788
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
||+-|-=|-+-+
T Consensus 145 l~LagDlfy~~~ 156 (218)
T COG3897 145 LLLAGDLFYNHT 156 (218)
T ss_pred EEEeeceecCch
Confidence 888887776644
No 234
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=44.50 E-value=20 Score=40.11 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=23.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
.+++|+.++.|||+.|-|...|.|+=|.
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~rl~E~ 348 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRRLTEN 348 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 6678999999999999999888776443
No 235
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=42.65 E-value=26 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=29.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 245 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rcG~da~i~eLvD~ 245 (697)
|-...|+.+||+..||..|+.+..++.++++++-.
T Consensus 147 e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~ 181 (186)
T PRK14600 147 DALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRK 181 (186)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHH
Confidence 34459999999999999999999877788877643
No 236
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=41.66 E-value=35 Score=36.52 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=42.5
Q ss_pred CCCChh----HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh----hccCCccE
Q 005421 572 SGIGGA----EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDF 643 (697)
Q Consensus 572 SGiGGl----slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~----~~~g~~DL 643 (697)
.|+||. +..|-..|+.+ .+++.+..+.................++..|+++ ..+++... ..+|.+||
T Consensus 12 ggagGIGl~~sk~Ll~kgik~---~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDI 86 (261)
T KOG4169|consen 12 GGAGGIGLATSKALLEKGIKV---LVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDI 86 (261)
T ss_pred cCCchhhHHHHHHHHHcCchh---eeehhhhhCHHHHHHHhccCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEE
Confidence 455554 55667889864 3445554444444443333333445567789988 44555433 35799999
Q ss_pred EEecC
Q 005421 644 VICQN 648 (697)
Q Consensus 644 VIGGp 648 (697)
+|-|.
T Consensus 87 lINgA 91 (261)
T KOG4169|consen 87 LINGA 91 (261)
T ss_pred EEccc
Confidence 99665
No 237
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=41.63 E-value=1.5e+02 Score=33.12 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHhCCCCHHHHHHHHHHHhhh----ccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCchhhhHH
Q 005421 64 SPSLVDKVIEEKGQDNVDLLLETLIEYNAL----QESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIE 139 (697)
Q Consensus 64 ~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal----~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s~~~~~~ 139 (697)
-+++....+|++|..|. +|+++|-..|+- =.-+.+. .+.+-.+..... .+.--++..-+ ..+
T Consensus 235 NP~ll~~~Lqqlg~~nP-~L~q~Iq~nqe~Fl~mlnep~~~----------~~~~~~~~~~~~-~~~~~I~vtpe--e~e 300 (340)
T KOG0011|consen 235 NPELLHPLLQQLGKQNP-QLLQLIQENQEAFLQLLNEPVEG----------GDGGGTGAPAAE-GPGHQIQVTPE--EKE 300 (340)
T ss_pred CHHHHHHHHHHHhhhCH-HHHHHHHHHHHHHHHHhhccccc----------cccccccccccc-CCcceEecCHH--HHH
Confidence 36788899999999887 677887777641 1111111 011111111000 01112333334 567
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
-|..|-.|||++.+|..|-=-|-.+- +.-+.||+..
T Consensus 301 AIeRL~alGF~ralViqayfACdKNE--elAAN~Ll~~ 336 (340)
T KOG0011|consen 301 AIERLEALGFPRALVIQAYFACDKNE--ELAANYLLSH 336 (340)
T ss_pred HHHHHHHhCCcHHHHHHHHHhcCccH--HHHHHHHHhh
Confidence 89999999999999999999998762 4455677654
No 238
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=41.34 E-value=31 Score=38.51 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=32.2
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHH
Q 005421 560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 602 (697)
Q Consensus 560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~ 602 (697)
+|..+ +|||.=||.|=+++=--+||- +.|+|||.+..+..
T Consensus 58 lf~dK-~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 58 LFKDK-TVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADF 97 (346)
T ss_pred hcCCC-EEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHH
Confidence 45544 599999999999988889995 56899999887643
No 239
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=40.48 E-value=50 Score=36.62 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||=||.|.+.+.+.+. +- ..+.++|+++......+...... ...++.+|+.++.- .-+.|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHhCCC--------CCCce
Confidence 4678999999999988877553 21 34788999988766655432211 11234556654431 11357
Q ss_pred cEEEec
Q 005421 642 DFVICQ 647 (697)
Q Consensus 642 DLVIGG 647 (697)
|+|+..
T Consensus 180 DvVIs~ 185 (340)
T PLN02490 180 DRYVSA 185 (340)
T ss_pred eEEEEc
Confidence 877753
No 240
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.20 E-value=60 Score=36.73 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=33.9
Q ss_pred CCcccccCCCCC--hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 564 GLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 564 ~itvLSLFSGiG--GlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
..+|+|-|||.| |...+.+- |.. .|+.+||++.|.++.+.+-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~--~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVV--KVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Ccc--EEEEccCCHHHHHHHHHHHH
Confidence 588999999888 77777654 432 57889999999999987653
No 241
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=39.08 E-value=54 Score=36.93 Aligned_cols=52 Identities=27% Similarity=0.322 Sum_probs=38.1
Q ss_pred cchhhhccccc--cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 005421 549 TLGYHLSVLKS--MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 603 (697)
Q Consensus 549 ti~~hLsvLK~--~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t 603 (697)
|-.|+-.+|.+ -|..++ |+|.=||.|=++.=..+||- +.|+|||-++-+..+
T Consensus 162 TgTY~~Ail~N~sDF~~ki-VlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA 215 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQDKI-VLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYA 215 (517)
T ss_pred hhHHHHHHHhcccccCCcE-EEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHH
Confidence 33445455544 355555 99999999999988889997 568999999876543
No 242
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=38.85 E-value=76 Score=34.58 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=39.9
Q ss_pred CCCCcccccCCCCChhHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccCh
Q 005421 562 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 628 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL-~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~ 628 (697)
..|++|||+=||-||+.+=+ ++-|. .|+++.+|+.-..-.+.-....+-. ...++..|.+++..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 46899999999999987543 44475 4689999988765555422222211 12244556655543
No 243
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=38.21 E-value=56 Score=33.52 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~--da~~~~Lld~I~ 175 (697)
.++.+..|+.+||++.++.+|+.++-. +.++++++-..+
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~aL 189 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLAL 189 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 467889999999999999999999833 345666665443
No 244
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=36.62 E-value=35 Score=37.32 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=54.3
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 133 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~s 133 (697)
|.=++.+--|..+++.+|+-..|...+.+-|-.||+|=-.+..+.
T Consensus 32 L~vy~~g~d~d~~~I~~AlsavGGpqT~~ALsvLlafV~~g~~~~----------------------------------- 76 (357)
T PF03216_consen 32 LTVYFFGADTDGKMIKRALSAVGGPQTNQALSVLLAFVTQGTNQD----------------------------------- 76 (357)
T ss_pred EEEEEecCccchHHHHHHHHHcCCchHHHHHHHHHHHHHcCCChh-----------------------------------
Confidence 566677888999999999999999999999999999987652211
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHH
Q 005421 134 EGLHIEKRASLLMMNFSVNEVDFA 157 (697)
Q Consensus 134 ~~~~~~~~~~lv~MGF~eeev~~A 157 (697)
+ .+-+..-|.+|||..+.+..|
T Consensus 77 ~--~et~~kiL~dmgFkv~~~p~a 98 (357)
T PF03216_consen 77 D--TETKCKILTDMGFKVTQVPRA 98 (357)
T ss_pred h--hhhHHHHHHHhCceeEecccC
Confidence 1 445677788999999888766
No 245
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=35.77 E-value=64 Score=33.70 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=47.7
Q ss_pred cccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC--ccccccccccChhhHHHhhhccCCccE
Q 005421 566 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~--li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+||||=||-|-+-..|++-||.-+ ++.||.++.|....+. -...++... -++..||.+= +. ..+++||
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~n-iAe~~~~~n~I~f~q~DI~~~--~~------~~~qfdl 139 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQN-IAERDGFSNEIRFQQLDITDP--DF------LSGQFDL 139 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHH-HHHhcCCCcceeEEEeeccCC--cc------cccceeE
Confidence 899999999999999999999743 7899999988765432 222222222 2345677543 11 1267777
Q ss_pred EEe
Q 005421 644 VIC 646 (697)
Q Consensus 644 VIG 646 (697)
|.-
T Consensus 140 vlD 142 (227)
T KOG1271|consen 140 VLD 142 (227)
T ss_pred Eee
Confidence 763
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=34.57 E-value=69 Score=35.99 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 601 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar 601 (697)
+..+.++|||=|+.||++.-|.+.|.. |+|||..+.+-
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~ 246 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQ 246 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCH
Confidence 456889999999999999999999973 78999887653
No 247
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=34.47 E-value=59 Score=33.81 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=40.8
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 644 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV 644 (697)
-++|++=||+|=|+..|.... .-+.++|+++.|...-+.--. ..+..-++..||....+ -+.||||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P---------~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP---------EGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT------------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC---------CCCeeEE
Confidence 358999999999999987665 568999999999877665322 12222245566654322 2678888
Q ss_pred Ee
Q 005421 645 IC 646 (697)
Q Consensus 645 IG 646 (697)
+-
T Consensus 111 V~ 112 (201)
T PF05401_consen 111 VL 112 (201)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 248
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=34.40 E-value=80 Score=35.70 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=76.7
Q ss_pred hhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCce-e--eE
Q 005421 515 HIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL-K--GV 591 (697)
Q Consensus 515 E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~-k--~V 591 (697)
.++++-+|=..-|-++++.+.+-...| ++++= + ...+-+|||+.|--||=++.|..+.+.- . .|
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSml------PvL~L------~-v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~v 186 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSML------PVLAL------G-VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYV 186 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhcc------chhhc------c-cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCee
Confidence 566777777777777777766655322 22221 1 1236789999999999999998887631 1 47
Q ss_pred EEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh-hccCCccEEEecCCCCcccc
Q 005421 592 ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-HKLGSIDFVICQNSVPQIPN 655 (697)
Q Consensus 592 vaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~-~~~g~~DLVIGGpPCQ~FS~ 655 (697)
++.|+|..=.+.+.+--...+.+...+...|++......+...- ..+-.||=|..=-||.+=+.
T Consensus 187 vaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 187 VANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred EecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcc
Confidence 89999987555554422222333333344555444333221000 02236899999999998643
No 249
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=33.01 E-value=49 Score=35.80 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=54.0
Q ss_pred ccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC----CCCccccccc
Q 005421 548 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQIEDI 623 (697)
Q Consensus 548 dti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~----~g~li~~~DI 623 (697)
..+..|.-.+.---| -+||=+=-|.||...-+.+..- ++-++.||||+......+.|+....+ +-..++++|.
T Consensus 63 hEml~h~~~~ah~~p--k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 63 HEMLAHVPLLAHPNP--KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHhchhhhCCCC--CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 334445444433223 2677776788888877777763 57789999999999999888764321 1112344554
Q ss_pred cccChhhHHHhhhcc-CCccEEEe
Q 005421 624 QALTTKKFESLIHKL-GSIDFVIC 646 (697)
Q Consensus 624 ~~Lt~~~I~~l~~~~-g~~DLVIG 646 (697)
.+ ++... ..+||||-
T Consensus 140 ~~--------~v~~~~~~fDvIi~ 155 (282)
T COG0421 140 VE--------FLRDCEEKFDVIIV 155 (282)
T ss_pred HH--------HHHhCCCcCCEEEE
Confidence 32 33333 36998773
No 250
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.90 E-value=49 Score=33.95 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC---CCCChhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKFG---SKTPISELA 243 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rcG---~da~i~eLv 243 (697)
|-...|+.+||+..||..||.++- ++.++++++
T Consensus 154 ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~li 189 (197)
T PRK14603 154 DAVLALLALGFREAQVRSVVAELLAQNPEASAQTLI 189 (197)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 344589999999999999999983 344566554
No 251
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=32.27 E-value=68 Score=33.65 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc-
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK- 637 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~- 637 (697)
+.-+||-|=.|.||....+.+.. .++.+..||||+...+..++|+.... .+...++++|-.. ++..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--------~l~~~ 146 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--------FLKET 146 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--------HHHTS
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--------HHHhc
Confidence 45667766567777766665554 24668899999999999999876421 1122233444332 2222
Q ss_pred cC-CccEEEecCC
Q 005421 638 LG-SIDFVICQNS 649 (697)
Q Consensus 638 ~g-~~DLVIGGpP 649 (697)
.. .+|+||--.+
T Consensus 147 ~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 147 QEEKYDVIIVDLT 159 (246)
T ss_dssp SST-EEEEEEESS
T ss_pred cCCcccEEEEeCC
Confidence 23 7999987543
No 252
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=31.91 E-value=83 Score=31.92 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCC-CchHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKD-APVYELVDFI 174 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~d-a~~~~Lld~I 174 (697)
..+.+..|..+||++.++.+|+++.+.+ ..+++++...
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~a 187 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKEAASVEELIREA 187 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4678999999999999999999999874 3567766543
No 253
>PRK14137 recX recombination regulator RecX; Provisional
Probab=31.11 E-value=1.9e+02 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=50.0
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNV 131 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~ 131 (697)
-.++..|..-|.+.++|+.||.+...++.-.++..|+.=. ..+. ....
T Consensus 105 ~rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~KK----~~~~--------------------------~~~~-- 152 (195)
T PRK14137 105 LRVRQTLRRRGVEETLIEETLAARDPQEEQQEARNLLERR----WSSF--------------------------ARKR-- 152 (195)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHHHh----cccc--------------------------Ccch--
Confidence 3477889999999999999999875433223333333211 1110 0000
Q ss_pred CchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 132 MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 132 ~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
.. ..+.+.+|+.=||+-+.|..||.++-..
T Consensus 153 -~~--k~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 153 -DP--RASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred -hH--HHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 11 5567789999999999999998875443
No 254
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.10 E-value=39 Score=36.68 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=30.6
Q ss_pred hhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421 56 SSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 88 (697)
Q Consensus 56 ~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL 88 (697)
+.+++||||...+.+|+.-.|..+.+.+++-|-
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~ 37 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLE 37 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHHH
Confidence 789999999999999999999999999999883
No 255
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.74 E-value=50 Score=33.66 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=26.2
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC-CCChhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKFGS-KTPISELA 243 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rcG~-da~i~eLv 243 (697)
|-...|+.+||+..||..||.+.-. +.++++|+
T Consensus 145 e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 178 (188)
T PRK14606 145 ESLEALVSLGYPEKQAREAVKHVYREGMKTSELI 178 (188)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHH
Confidence 3445899999999999999999854 55666654
No 256
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=30.71 E-value=77 Score=30.53 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDA 165 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da 165 (697)
.++|+.+|..-|.+++||..|+++.|...
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 67899999999999999999999999876
No 257
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.67 E-value=56 Score=33.65 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=26.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC---CCCChhhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKFG---SKTPISELAD 244 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rcG---~da~i~eLvD 244 (697)
|-...|+.+||+..||..|+.++- ++.++++|+-
T Consensus 157 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 193 (203)
T PRK14602 157 DALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALR 193 (203)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 444589999999999999999983 3455665543
No 258
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=30.13 E-value=1.1e+02 Score=31.86 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=36.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
..+-.|+|-|+|.|-..++..++|-. .+.+|+++........-|.
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHH
Confidence 34677999999999999999999964 5679999888776655444
No 259
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=29.69 E-value=43 Score=38.64 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=38.1
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
+|.-|-.|-|+|||+|=+++-+-.-| ..|++.|.++...+.|+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKAN 290 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHh
Confidence 67778889999999999988777777 4689999999998888763
No 260
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=28.94 E-value=62 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=26.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCC---CCchHHHHHH
Q 005421 140 KRASLLMMNFSVNEVDFALDKLGK---DAPVYELVDF 173 (697)
Q Consensus 140 ~~~~lv~MGF~eeev~~AI~~~G~---da~~~~Lld~ 173 (697)
.+..|+.+||++.|+.+|++..-. +.++++++-.
T Consensus 159 ~v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~ 195 (201)
T COG0632 159 AVEALVALGYKEKEIKKAVKKVLKENPDADVEELIKE 195 (201)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 378999999999999999988765 3445555443
No 261
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=28.91 E-value=96 Score=26.96 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.9
Q ss_pred hhhhhccCCCChHHHHHHHHHh----C-------CCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEK----G-------QDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~----G-------e~d~d~ilE~LLtyqa 92 (697)
.++++-.|||+.+.|.-+|+++ | +++-..|++.||..++
T Consensus 14 A~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 14 ALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 5788999999999999998876 3 3455567777776554
No 262
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=28.78 E-value=60 Score=33.18 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=26.8
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhh
Q 005421 212 ITLQLLEMGFSENQVSLAIEKFGS--KTPISELAD 244 (697)
Q Consensus 212 k~l~L~~MGFseeEas~AI~rcG~--da~i~eLvD 244 (697)
-...|...||+..||..|+..++. +.++++++-
T Consensus 151 ~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir 185 (194)
T PRK14605 151 ILATLTALGYSSSEAAKAISSLGDNGDLPLEERIK 185 (194)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHH
Confidence 345899999999999999999985 556776653
No 263
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=27.47 E-value=87 Score=31.78 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=31.5
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCC--CHHHHHHHHHH
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQD--NVDLLLETLIE 89 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~--d~d~ilE~LLt 89 (697)
..++..|..+||++..+.+|+++.+.. +++.++..-|.
T Consensus 150 ~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~aL~ 189 (192)
T PRK00116 150 EEAVSALVALGYKPKEASKAVAKILKEAASVEELIREALK 189 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 568999999999999999999999874 67776665443
No 264
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=27.26 E-value=1.9e+02 Score=32.98 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCccc
Q 005421 577 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 654 (697)
Q Consensus 577 lslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS 654 (697)
+...|..+|+++..+..-...+....-++.. .....++..| -+..++...+.+ .++||++||+....++
T Consensus 341 l~~~l~elGmevv~~~t~~~~~~d~~~l~~~-----~~~~~~v~~~---~d~~e~~~~i~~-~~pDl~ig~~~~~~~a 409 (456)
T TIGR01283 341 LVSALQDLGMEVVATGTQKGTEEDYARIREL-----MGEGTVMLDD---ANPRELLKLLLE-YKADLLIAGGKERYTA 409 (456)
T ss_pred HHHHHHHCCCEEEEEeeecCCHHHHHHHHHH-----cCCCeEEEeC---CCHHHHHHHHhh-cCCCEEEEccchHHHH
Confidence 4445678999864443333433332223221 1112222222 344455544432 4699999997766554
No 265
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.23 E-value=85 Score=33.63 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHH
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE 632 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~ 632 (697)
...+-.+||+=|-.|||+.-+-+.|-. -|+|+|.--. +-+|.=.+.+. ..+...+++.++++++.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~-----Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYG-----QLHWKLRNDPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCC-----ccCHhHhcCCcEEEEecCChhhCCHHHcc
Confidence 346778999999999999888888874 5899997742 11232111121 22334566766666553
No 266
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=26.96 E-value=1.6e+02 Score=32.88 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=59.0
Q ss_pred cchhhHHhcCCCCCcccCCCChHHH-HHhhhhhhcccc--------c-------hhhhccccccCCCCCcccccCCCC--
Q 005421 513 PEHIELILGYPSNHTQAAGNSLTAR-LESLRHCFQTDT--------L-------GYHLSVLKSMFPGGLTMLSVFSGI-- 574 (697)
Q Consensus 513 ~~E~E~i~GfP~~~Tr~~~ls~teR-~k~Lgnsfqvdt--------i-------~~hLsvLK~~fp~~itvLSLFSGi-- 574 (697)
...||+-||-|.-+....++..+++ ++.|...+..+. + ..-+...+..+. +.++. ++.+.
T Consensus 221 a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~-gkrv~-i~~~~~~ 298 (410)
T cd01968 221 ARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLE-GKKAA-LYTGGVK 298 (410)
T ss_pred HHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEE-EEcCCch
Confidence 5566666777765544345555533 334444443321 1 111112222232 33442 34332
Q ss_pred -ChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421 575 -GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 575 -GGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
-|+...|+.+|+++..+..-..++....-++.. .+...++. .+.+..++...+.. .++||++|++=..
T Consensus 299 ~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~-----~~~~~~v~---~~~~~~e~~~~i~~-~~pDl~ig~s~~~ 367 (410)
T cd01968 299 SWSLVSALQDLGMEVVATGTQKGTKEDYERIKEL-----LGEGTVIV---DDANPRELKKLLKE-KKADLLVAGGKER 367 (410)
T ss_pred HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHH-----hCCCcEEE---eCCCHHHHHHHHhh-cCCCEEEECCcch
Confidence 356667889999865443334443322222221 11111222 23344444444332 4699999985443
No 267
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=26.58 E-value=2e+02 Score=28.31 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.+||+|=||+|=..+.+.++ |- ..|+.-|.++ +...++.+=.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~ 89 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIE 89 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHH
T ss_pred CCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHH
Confidence 5679999999999777777777 43 4578899999 7777776543
No 268
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=25.26 E-value=69 Score=26.08 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.0
Q ss_pred HHHhc---CCCHHHHHHHHHhh
Q 005421 215 QLLEM---GFSENQVSLAIEKF 233 (697)
Q Consensus 215 ~L~~M---GFseeEas~AI~rc 233 (697)
.|+.- ||+++||..||+.+
T Consensus 27 QL~se~ge~Ft~e~A~YAv~~l 48 (48)
T PF07553_consen 27 QLTSEYGEGFTEEEAQYAVDHL 48 (48)
T ss_pred HHHhhcccCCCHHHHHHHHHcC
Confidence 77754 99999999999853
No 269
>PLN02823 spermine synthase
Probab=25.25 E-value=1.7e+02 Score=32.39 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
+.-+||-|=.|.|++..-+.+.. .++.+..||||+...+..+.|+.... .+...++.+|..+. |+ ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~----L~---~~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE----LE---KRD 174 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH----Hh---hCC
Confidence 34467655455555444333432 23568899999999999998875321 12222445555432 11 123
Q ss_pred CCccEEEecC
Q 005421 639 GSIDFVICQN 648 (697)
Q Consensus 639 g~~DLVIGGp 648 (697)
+.+|||+.-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 5799999763
No 270
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=60 Score=33.56 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=23.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
..+++..|..|||+++++..|+...+-+
T Consensus 162 ~~~~v~~l~~mGf~~~~~i~~L~~~~w~ 189 (200)
T KOG0418|consen 162 DKKKVDSLIEMGFSELEAILVLSGSDWN 189 (200)
T ss_pred hHHHHHHHHHhcccHHHHHHHhhccccc
Confidence 5678999999999999998888776554
No 271
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=55 Score=33.84 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.8
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQ 77 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge 77 (697)
-++++.|+.|||++..+..|+...+=
T Consensus 163 ~~~v~~l~~mGf~~~~~i~~L~~~~w 188 (200)
T KOG0418|consen 163 KKKVDSLIEMGFSELEAILVLSGSDW 188 (200)
T ss_pred HHHHHHHHHhcccHHHHHHHhhcccc
Confidence 45899999999999998888876654
No 272
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=24.19 E-value=69 Score=33.21 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=26.0
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCC---CCChhhhhh
Q 005421 213 TLQLLEMGFSENQVSLAIEKFGS---KTPISELAD 244 (697)
Q Consensus 213 ~l~L~~MGFseeEas~AI~rcG~---da~i~eLvD 244 (697)
...|+.+||++.|+..|+...-. +++++++.-
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik 194 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIK 194 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 56999999999999999988775 566666653
No 273
>COG3778 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.07 E-value=88 Score=32.16 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=39.0
Q ss_pred cchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHH-----HHcCCc
Q 005421 513 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTL-----HRLGIK 587 (697)
Q Consensus 513 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL-----~~aGf~ 587 (697)
..+.|+++|+|.-- ..+-+..+||+.+.+..+ ++||++..| +.+|+.
T Consensus 57 L~~WEr~lgLp~~~--~~g~tlqQRq~av~aKln--------------------------~~Ggls~~ffiriA~aaGy~ 108 (188)
T COG3778 57 LEDWERLLGLPECD--MTGKTLQQRQRAVMAKLN--------------------------ETGGLSIAFFIRIAAAAGYD 108 (188)
T ss_pred HHHHHHHcCCCccc--ccchhHHHHHHHHHHHHh--------------------------ccCcccHHHHHHHHHHcCCC
Confidence 47889999999864 456778899988766552 347777665 578887
Q ss_pred eeeEEEeeCCH
Q 005421 588 LKGVISIETSE 598 (697)
Q Consensus 588 ~k~VvaVEid~ 598 (697)
+.+ .+.++
T Consensus 109 iti---~~~~~ 116 (188)
T COG3778 109 ITI---TEYDP 116 (188)
T ss_pred eEe---eeccc
Confidence 533 56666
No 274
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.36 E-value=2.7e+02 Score=32.07 Aligned_cols=67 Identities=12% Similarity=0.291 Sum_probs=35.9
Q ss_pred hhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421 576 GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 576 GlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
++...|..+|+++..+..-...+...+.++... .+. .++.+| .+..++.+.+.+ .++||++|++--.
T Consensus 338 ~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~----~~~-~~v~~d---~~~~e~~~~i~~-~~pDliig~s~~~ 404 (475)
T PRK14478 338 SVVKALQELGMEVVGTSVKKSTDEDKERIKELM----GPD-AHMIDD---ANPRELYKMLKE-AKADIMLSGGRSQ 404 (475)
T ss_pred HHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc----CCC-cEEEeC---CCHHHHHHHHhh-cCCCEEEecCchh
Confidence 344556889998866655555554333343221 112 233333 334445444432 4699999986544
No 275
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=23.29 E-value=1.6e+02 Score=31.96 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~ 605 (697)
+..++|||=||.|+.+.-+..+ ++-|++-|+++..|..|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLS 133 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHH
Confidence 3468999999999998877542 467999999999887775
No 276
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=23.26 E-value=1.6e+02 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 62 GFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 62 GF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
.++++-|..++++++. |.+.-++.||.-+
T Consensus 14 ~~~~~~I~~~L~~~~~-~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 14 DLDREVIEAVLQANNG-DVEAAIDALLEMS 42 (42)
T ss_dssp SS-HHHHHHHHHHTTT-THHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 5788999999999987 8999999998743
No 277
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.17 E-value=2.8e+02 Score=31.36 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=22.8
Q ss_pred cchhhHHhcCCCCCcc-c-CCCChHHHH-Hhhhhhhccc
Q 005421 513 PEHIELILGYPSNHTQ-A-AGNSLTARL-ESLRHCFQTD 548 (697)
Q Consensus 513 ~~E~E~i~GfP~~~Tr-~-~~ls~teR~-k~Lgnsfqvd 548 (697)
...||+-||-|..+.. + .++..++++ +.|+..+..+
T Consensus 223 a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 223 AQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIE 261 (427)
T ss_pred HHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCC
Confidence 5668888888877654 2 467666554 5555555443
No 278
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=22.84 E-value=75 Score=35.39 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=31.4
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
-+..+++||+.+|-|.+|+.--=- |.|.-|||||+-
T Consensus 138 ~V~~Im~MGy~re~V~~AlRAafN-NPeRAVEYLl~G 173 (340)
T KOG0011|consen 138 TVQQIMEMGYDREEVERALRAAFN-NPERAVEYLLNG 173 (340)
T ss_pred HHHHHHHhCccHHHHHHHHHHhhC-ChhhhHHHHhcC
Confidence 467899999999999999987644 899999999973
No 279
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=22.79 E-value=23 Score=40.64 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=50.1
Q ss_pred CCccc-cccccccchhhHHHHhhhhcc-CCceeecccccc-----hhhccccccccCCCCCCcCCCCCCCCccccccCCC
Q 005421 370 PPYFF-YGNVVDVSIDCWVKMSHFLYS-LEPEFVNSQYFS-----ALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHT 442 (697)
Q Consensus 370 ppfF~-feNV~~~~~~~w~~Is~fL~~-i~Pe~Vds~~fs-----aa~R~Rgy~hNLP~~~R~~~~p~~p~ti~d~lp~~ 442 (697)
|-|++ =||=--+|...=..+.+-|.+ +.=.+++|-|+. |..+++.||-|||..-. -=|.+|-.|-
T Consensus 332 pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~--------~Wl~~a~~~~ 403 (445)
T COG3243 332 PVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAE--------AWLSGAKEHP 403 (445)
T ss_pred ceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHH--------HHHHhhccCC
Confidence 34444 455566677777778888776 444556666664 68999999999776633 1233455677
Q ss_pred CCCCCCcCc
Q 005421 443 KKWWPSWDT 451 (697)
Q Consensus 443 ~~~wp~wd~ 451 (697)
-+|||.|+.
T Consensus 404 gsww~~w~~ 412 (445)
T COG3243 404 GSWWPHWQQ 412 (445)
T ss_pred CccccchHH
Confidence 789999986
No 280
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=21.38 E-value=26 Score=28.47 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHH-hcCCChHHHHHHHHH
Q 005421 140 KRASLL-MMNFSVNEVDFALDK 160 (697)
Q Consensus 140 ~~~~lv-~MGF~eeev~~AI~~ 160 (697)
.+..|- .|||.+++|-.||++
T Consensus 5 vv~~Ls~tMGY~kdeI~eaL~~ 26 (46)
T PF08587_consen 5 VVSKLSKTMGYDKDEIYEALES 26 (46)
T ss_dssp CHHHHHCTT---HHHHHHHCCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHc
Confidence 455565 899999999999988
No 281
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=21.25 E-value=1.1e+02 Score=37.77 Aligned_cols=48 Identities=29% Similarity=0.470 Sum_probs=38.9
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
+.+|. +.+++|=|+|-|.+-+=..++|.. |++||.++++.-+++.-.+
T Consensus 86 ~~~~~-~~~~lDPfAG~GSIPlEAlRLG~~---v~AvelnPvAylfLKavlE 133 (875)
T COG1743 86 ETPFE-GPKLLDPFAGGGSIPLEALRLGLE---VVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCccc-CCcccccccCCCccchHHHhcCce---eEEEecccHHHHHHHHHHh
Confidence 45553 567999999999888877899964 6899999999988887554
No 282
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=20.61 E-value=1.5e+02 Score=30.29 Aligned_cols=39 Identities=10% Similarity=0.347 Sum_probs=30.1
Q ss_pred chhhhhhhccCCCChHHHHHHHHHhCC---CCHHHHHHHHHH
Q 005421 51 GSNLRSSFIGMGFSPSLVDKVIEEKGQ---DNVDLLLETLIE 89 (697)
Q Consensus 51 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge---~d~d~ilE~LLt 89 (697)
...++..+..+||++..|.+||.+.-. .+++.|+..-|.
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aLk 188 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEALK 188 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 456889999999999999999999843 266666655443
No 283
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.34 E-value=1e+02 Score=31.87 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLG 162 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G 162 (697)
.++.+..|+.+||++.++.+|+.++-
T Consensus 144 ~~ea~~AL~~LGy~~~ea~~al~~v~ 169 (196)
T PRK13901 144 FKELEQSIVNMGFDRKLVNSAIKEIM 169 (196)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 45688999999999999999998753
No 284
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=20.02 E-value=1.9e+02 Score=33.49 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCCcccccCCCCChhHHHH----HHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTL----HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL----~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+-+++|+.|--||=+.-. +.-| +|+|.|.+..-.++++.+.......++++...|..+...+.+ .
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc------C
Confidence 4789999999999976432 3556 389999999988899887777767788887888876654432 1
Q ss_pred CCccEEEecCCCCcccc
Q 005421 639 GSIDFVICQNSVPQIPN 655 (697)
Q Consensus 639 g~~DLVIGGpPCQ~FS~ 655 (697)
+.||=|.=-.||.+...
T Consensus 311 ~~fDRVLLDAPCSGtgv 327 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGV 327 (460)
T ss_pred cccceeeecCCCCCCcc
Confidence 36998888999999543
No 285
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.01 E-value=51 Score=38.69 Aligned_cols=60 Identities=32% Similarity=0.376 Sum_probs=39.3
Q ss_pred hhhhccccchh--hhccccccC--CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 005421 542 RHCFQTDTLGY--HLSVLKSMF--PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 542 gnsfqvdti~~--hLsvLK~~f--p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~ 604 (697)
+..||+.|-+- +.++..++- +.+-.++|+|||.|-+.+++.+ | ++-|+.||+++.+..--
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~--~~~ViGvEi~~~aV~dA 421 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-G--VKRVIGVEISPDAVEDA 421 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-c--ccceeeeecChhhcchh
Confidence 34567654332 233333322 3445699999999999999876 3 35689999999886443
Done!