Query 005421
Match_columns 697
No_of_seqs 237 out of 952
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 00:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 9.3E-26 3.2E-30 233.2 8.4 105 565-696 1-105 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 2.3E-24 8E-29 224.6 11.9 116 560-695 12-127 (295)
3 3me5_A Cytosine-specific methy 99.9 2E-23 7E-28 230.6 9.0 125 564-696 88-222 (482)
4 3qv2_A 5-cytosine DNA methyltr 99.9 3E-23 1E-27 218.9 8.4 118 556-696 2-125 (327)
5 4h0n_A DNMT2; SAH binding, tra 99.9 4.5E-23 1.5E-27 217.9 9.6 110 564-695 3-113 (333)
6 3g7u_A Cytosine-specific methy 99.9 9.9E-23 3.4E-27 218.4 9.1 113 564-696 2-114 (376)
7 4ft4_B DNA (cytosine-5)-methyl 99.9 9.7E-23 3.3E-27 234.6 7.2 122 562-696 210-427 (784)
8 2c7p_A Modification methylase 99.9 5.6E-22 1.9E-26 208.8 11.1 106 563-696 10-115 (327)
9 1g55_A DNA cytosine methyltran 99.8 6.4E-22 2.2E-26 209.0 8.6 110 564-695 2-113 (343)
10 4dkj_A Cytosine-specific methy 99.8 2.9E-21 9.8E-26 209.3 7.5 111 563-691 9-167 (403)
11 3swr_A DNA (cytosine-5)-methyl 99.8 9.7E-20 3.3E-24 215.5 5.8 119 562-696 538-664 (1002)
12 3av4_A DNA (cytosine-5)-methyl 99.8 9.4E-20 3.2E-24 220.2 3.7 118 563-696 850-975 (1330)
13 2qrv_B DNA (cytosine-5)-methyl 99.8 4.3E-19 1.5E-23 179.5 5.7 86 563-695 32-117 (230)
14 2pv0_B DNA (cytosine-5)-methyl 99.7 4.6E-18 1.6E-22 182.7 7.6 88 561-695 186-273 (386)
15 2qrv_A DNA (cytosine-5)-methyl 99.5 7.4E-14 2.5E-18 145.6 9.7 161 369-562 131-293 (295)
16 4h0n_A DNMT2; SAH binding, tra 99.4 8.9E-14 3E-18 147.0 1.5 177 369-558 111-332 (333)
17 3qv2_A 5-cytosine DNA methyltr 99.3 4.7E-13 1.6E-17 141.3 3.1 178 369-561 122-325 (327)
18 4ae4_A Ubiquitin-associated pr 99.3 2.4E-12 8.1E-17 118.5 4.1 110 48-177 5-114 (118)
19 4dkj_A Cytosine-specific methy 98.7 3.8E-09 1.3E-13 114.7 3.5 187 368-564 176-395 (403)
20 3ubt_Y Modification methylase 98.7 1.1E-09 3.9E-14 113.0 -0.9 192 367-559 100-322 (331)
21 3me5_A Cytosine-specific methy 98.6 2E-08 7E-13 111.3 6.5 180 367-561 217-456 (482)
22 2c7p_A Modification methylase 98.6 2E-08 6.9E-13 105.8 5.5 180 368-559 111-320 (327)
23 2lbc_A Ubiquitin carboxyl-term 98.6 3.5E-07 1.2E-11 84.3 11.8 107 54-177 6-116 (126)
24 2qrv_B DNA (cytosine-5)-methyl 98.6 1.2E-08 4E-13 103.6 1.2 60 364-424 116-176 (230)
25 4ae4_A Ubiquitin-associated pr 98.5 2.6E-07 8.8E-12 85.1 8.2 102 137-248 8-113 (118)
26 1g55_A DNA cytosine methyltran 98.4 1.6E-07 5.3E-12 99.3 5.9 54 504-557 288-341 (343)
27 2lbc_A Ubiquitin carboxyl-term 98.2 1.1E-05 3.6E-10 74.4 10.9 103 139-249 5-116 (126)
28 4ft4_B DNA (cytosine-5)-methyl 98.1 2.3E-06 7.8E-11 98.9 6.1 55 496-552 678-732 (784)
29 3g7u_A Cytosine-specific methy 97.9 4.9E-06 1.7E-10 89.3 2.9 52 505-558 313-364 (376)
30 3c0k_A UPF0064 protein YCCW; P 97.6 0.00012 4.1E-09 78.0 9.4 87 563-655 220-308 (396)
31 2pv0_B DNA (cytosine-5)-methyl 97.6 2.8E-05 9.6E-10 84.1 4.3 55 370-425 278-333 (386)
32 2igt_A SAM dependent methyltra 97.6 0.00017 5.8E-09 75.8 9.3 85 563-654 153-239 (332)
33 1wy7_A Hypothetical protein PH 97.4 0.00037 1.2E-08 66.1 8.4 78 563-654 49-126 (207)
34 3gdh_A Trimethylguanosine synt 97.4 0.00028 9.6E-09 68.6 7.3 81 563-655 78-159 (241)
35 2frn_A Hypothetical protein PH 97.3 0.00032 1.1E-08 71.2 7.4 80 562-652 124-204 (278)
36 3k6r_A Putative transferase PH 97.3 0.00027 9.2E-09 73.2 6.6 82 560-652 122-204 (278)
37 3swr_A DNA (cytosine-5)-methyl 97.2 0.00022 7.7E-09 85.3 4.7 45 507-553 946-990 (1002)
38 2yx1_A Hypothetical protein MJ 97.1 0.0011 3.6E-08 69.4 9.1 76 562-652 194-270 (336)
39 3p9n_A Possible methyltransfer 97.1 0.00049 1.7E-08 64.7 5.8 81 563-651 44-124 (189)
40 2cos_A Serine/threonine protei 97.1 0.00048 1.6E-08 55.3 4.4 42 51-92 9-50 (54)
41 1ws6_A Methyltransferase; stru 97.0 0.00095 3.2E-08 60.6 6.7 83 561-651 39-121 (171)
42 2fpo_A Methylase YHHF; structu 97.0 0.00088 3E-08 64.4 6.6 77 564-649 55-131 (202)
43 1whc_A RSGI RUH-027, UBA/UBX 3 97.0 0.00097 3.3E-08 55.0 5.8 39 53-91 11-49 (64)
44 4dmg_A Putative uncharacterize 97.0 0.0008 2.7E-08 72.5 6.9 77 563-650 214-290 (393)
45 3a27_A TYW2, uncharacterized p 97.0 0.0012 4.1E-08 66.9 7.8 80 561-650 117-196 (272)
46 2ift_A Putative methylase HI07 97.0 0.00086 3E-08 64.4 6.3 79 564-650 54-135 (201)
47 3ajd_A Putative methyltransfer 97.0 0.00088 3E-08 67.7 6.4 88 563-656 83-172 (274)
48 2crn_A Ubash3A protein; compac 97.0 0.00092 3.2E-08 55.3 5.3 40 52-91 10-49 (64)
49 1wgn_A UBAP1, ubiquitin associ 97.0 0.0008 2.8E-08 55.5 4.8 40 137-178 19-58 (63)
50 2b78_A Hypothetical protein SM 96.9 0.0013 4.3E-08 70.3 7.4 85 563-653 212-298 (385)
51 2dak_A Ubiquitin carboxyl-term 96.9 0.00098 3.3E-08 54.6 4.8 47 45-92 3-49 (63)
52 2as0_A Hypothetical protein PH 96.8 0.0018 6.1E-08 68.9 7.7 84 563-652 217-301 (396)
53 1oqy_A HHR23A, UV excision rep 96.8 0.0023 7.7E-08 69.0 8.3 36 54-90 171-206 (368)
54 2ekk_A UBA domain from E3 ubiq 96.8 0.00091 3.1E-08 51.7 3.7 36 52-89 10-45 (47)
55 1ne2_A Hypothetical protein TA 96.8 0.0022 7.6E-08 60.6 7.0 74 563-654 51-124 (200)
56 1ify_A HHR23A, UV excision rep 96.7 0.0017 6E-08 50.8 5.0 39 137-177 8-46 (49)
57 1wxx_A TT1595, hypothetical pr 96.7 0.0036 1.2E-07 66.4 8.9 85 563-654 209-293 (382)
58 1vg5_A RSGI RUH-014, rhomboid 96.7 0.0016 5.4E-08 55.4 4.7 40 137-178 29-68 (73)
59 2g3q_A Protein YBL047C; endocy 96.7 0.0025 8.5E-08 48.2 5.2 37 138-176 5-41 (43)
60 3lpm_A Putative methyltransfer 96.6 0.0041 1.4E-07 61.7 8.2 83 563-653 49-132 (259)
61 3evz_A Methyltransferase; NYSG 96.6 0.005 1.7E-07 59.2 8.2 83 561-654 53-137 (230)
62 3bt7_A TRNA (uracil-5-)-methyl 96.6 0.0029 9.9E-08 66.9 7.0 83 564-653 214-308 (369)
63 2fhp_A Methylase, putative; al 96.5 0.0052 1.8E-07 56.6 7.4 81 563-649 44-125 (187)
64 2ekk_A UBA domain from E3 ubiq 96.5 0.0016 5.6E-08 50.2 3.3 38 137-177 9-46 (47)
65 3v97_A Ribosomal RNA large sub 96.5 0.0043 1.5E-07 71.6 8.3 81 563-652 539-621 (703)
66 3av4_A DNA (cytosine-5)-methyl 96.5 0.0036 1.2E-07 76.9 7.7 50 368-417 971-1029(1330)
67 2dak_A Ubiquitin carboxyl-term 96.4 0.0035 1.2E-07 51.4 5.1 40 137-178 9-48 (63)
68 1whc_A RSGI RUH-027, UBA/UBX 3 96.4 0.0039 1.3E-07 51.4 5.4 38 140-178 12-49 (64)
69 3grz_A L11 mtase, ribosomal pr 96.4 0.0043 1.5E-07 58.7 6.6 84 557-652 54-137 (205)
70 1ixk_A Methyltransferase; open 96.4 0.0065 2.2E-07 62.9 8.4 86 563-656 118-203 (315)
71 1wji_A Tudor domain containing 96.4 0.0042 1.4E-07 51.2 5.5 40 138-179 10-49 (63)
72 2esr_A Methyltransferase; stru 96.4 0.0049 1.7E-07 56.8 6.6 79 563-650 31-110 (177)
73 3tma_A Methyltransferase; thum 96.4 0.012 4.2E-07 61.3 10.3 80 563-651 203-283 (354)
74 2knz_A Ubiquilin-4; cytoplasm, 96.3 0.005 1.7E-07 48.9 5.3 40 137-178 11-51 (53)
75 2jjq_A Uncharacterized RNA met 96.3 0.0068 2.3E-07 65.9 7.9 77 562-652 289-365 (425)
76 4dzr_A Protein-(glutamine-N5) 96.3 0.0039 1.3E-07 58.3 5.0 87 562-654 29-115 (215)
77 2b9e_A NOL1/NOP2/SUN domain fa 96.2 0.0086 2.9E-07 62.5 8.0 88 563-656 102-190 (309)
78 3tm4_A TRNA (guanine N2-)-meth 96.2 0.011 3.6E-07 62.8 8.8 80 562-650 216-296 (373)
79 2b3t_A Protein methyltransfera 96.2 0.0082 2.8E-07 60.1 7.5 80 563-654 109-190 (276)
80 2dag_A Ubiquitin carboxyl-term 96.2 0.006 2.1E-07 51.7 5.5 41 137-178 9-49 (74)
81 3mti_A RRNA methylase; SAM-dep 96.2 0.008 2.7E-07 55.8 6.9 83 557-649 16-98 (185)
82 2h1r_A Dimethyladenosine trans 96.2 0.0042 1.4E-07 64.0 5.4 99 540-653 19-119 (299)
83 3axs_A Probable N(2),N(2)-dime 96.2 0.0059 2E-07 66.1 6.7 80 563-652 52-137 (392)
84 1veg_A NEDD8 ultimate buster-1 96.2 0.0059 2E-07 53.1 5.4 40 137-178 29-68 (83)
85 1wgn_A UBAP1, ubiquitin associ 96.2 0.0022 7.6E-08 52.9 2.5 42 50-92 18-59 (63)
86 2h00_A Methyltransferase 10 do 96.1 0.01 3.5E-07 58.3 7.7 86 563-654 65-154 (254)
87 1nv8_A HEMK protein; class I a 96.1 0.011 3.8E-07 60.4 8.0 82 564-655 124-207 (284)
88 2vdv_E TRNA (guanine-N(7)-)-me 96.1 0.01 3.5E-07 58.5 7.4 85 563-653 49-141 (246)
89 1z96_A DNA-damage, UBA-domain 96.1 0.0074 2.5E-07 44.4 4.8 36 137-174 4-39 (40)
90 2crn_A Ubash3A protein; compac 96.0 0.0074 2.5E-07 49.9 5.1 38 140-178 12-49 (64)
91 1wji_A Tudor domain containing 96.0 0.0074 2.5E-07 49.7 5.0 37 54-91 12-48 (63)
92 1oqy_A HHR23A, UV excision rep 96.0 0.0087 3E-07 64.5 6.9 38 137-176 168-205 (368)
93 2g3q_A Protein YBL047C; endocy 96.0 0.0068 2.3E-07 45.8 4.2 35 54-89 7-41 (43)
94 1wiv_A UBP14, ubiquitin-specif 96.0 0.0075 2.6E-07 51.0 4.9 40 137-178 29-68 (73)
95 2ozv_A Hypothetical protein AT 95.9 0.013 4.3E-07 58.8 7.3 89 563-653 36-128 (260)
96 3e05_A Precorrin-6Y C5,15-meth 95.9 0.026 9.1E-07 53.3 9.2 80 563-651 40-119 (204)
97 3m4x_A NOL1/NOP2/SUN family pr 95.9 0.0089 3.1E-07 65.9 6.6 86 563-656 105-191 (456)
98 2dag_A Ubiquitin carboxyl-term 95.8 0.0069 2.3E-07 51.4 4.1 39 53-91 11-49 (74)
99 2cpw_A CBL-interacting protein 95.8 0.0075 2.6E-07 49.8 4.2 38 140-178 22-59 (64)
100 1ify_A HHR23A, UV excision rep 95.8 0.0061 2.1E-07 47.7 3.3 35 54-89 11-45 (49)
101 3m6w_A RRNA methylase; rRNA me 95.7 0.016 5.3E-07 64.1 7.7 86 563-656 101-186 (464)
102 2frx_A Hypothetical protein YE 95.7 0.017 5.7E-07 63.9 7.7 86 563-656 117-203 (479)
103 1ve3_A Hypothetical protein PH 95.7 0.021 7.1E-07 54.2 7.4 76 562-649 37-112 (227)
104 2dul_A N(2),N(2)-dimethylguano 95.7 0.011 3.8E-07 63.3 6.1 80 563-652 47-143 (378)
105 1zq9_A Probable dimethyladenos 95.7 0.012 4E-07 60.2 5.9 78 563-653 28-106 (285)
106 2jy5_A Ubiquilin-1; UBA, alter 95.7 0.013 4.3E-07 46.4 4.8 38 137-176 12-50 (52)
107 3ll7_A Putative methyltransfer 95.7 0.015 5.2E-07 63.4 7.1 79 564-651 94-174 (410)
108 3lbf_A Protein-L-isoaspartate 95.6 0.032 1.1E-06 52.7 8.4 80 563-653 77-156 (210)
109 1uwv_A 23S rRNA (uracil-5-)-me 95.6 0.02 6.7E-07 62.0 7.7 84 563-653 286-369 (433)
110 1dus_A MJ0882; hypothetical pr 95.6 0.028 9.5E-07 51.4 7.5 77 563-651 52-130 (194)
111 1vek_A UBP14, ubiquitin-specif 95.5 0.01 3.5E-07 51.5 4.2 40 52-91 30-69 (84)
112 2f8l_A Hypothetical protein LM 95.5 0.013 4.5E-07 60.9 5.7 80 563-652 130-213 (344)
113 2yxl_A PH0851 protein, 450AA l 95.5 0.033 1.1E-06 60.6 8.9 88 563-656 259-346 (450)
114 2cpw_A CBL-interacting protein 95.4 0.0097 3.3E-07 49.1 3.5 37 54-90 22-58 (64)
115 1vg5_A RSGI RUH-014, rhomboid 95.4 0.011 3.7E-07 50.3 3.9 38 53-91 31-68 (73)
116 3dmg_A Probable ribosomal RNA 95.4 0.026 8.9E-07 60.4 7.8 77 563-651 233-309 (381)
117 2dai_A Ubadc1, ubiquitin assoc 95.4 0.019 6.5E-07 49.8 5.5 40 137-178 29-68 (83)
118 2pxx_A Uncharacterized protein 95.4 0.022 7.5E-07 53.3 6.4 82 558-651 37-118 (215)
119 3k0b_A Predicted N6-adenine-sp 95.3 0.03 1E-06 60.3 7.8 79 563-650 201-317 (393)
120 3m70_A Tellurite resistance pr 95.3 0.033 1.1E-06 55.4 7.6 76 563-651 120-195 (286)
121 3eey_A Putative rRNA methylase 95.3 0.017 5.9E-07 54.1 5.2 82 561-650 20-103 (197)
122 2yxd_A Probable cobalt-precorr 95.3 0.032 1.1E-06 50.6 6.8 75 563-649 35-109 (183)
123 2pbf_A Protein-L-isoaspartate 95.2 0.047 1.6E-06 52.4 8.2 96 554-653 71-175 (227)
124 1vek_A UBP14, ubiquitin-specif 95.2 0.025 8.6E-07 49.1 5.5 41 137-178 29-69 (84)
125 1sqg_A SUN protein, FMU protei 95.2 0.033 1.1E-06 60.0 7.7 86 563-656 246-331 (429)
126 3ldu_A Putative methylase; str 95.2 0.023 7.9E-07 60.9 6.4 78 563-649 195-310 (385)
127 3fut_A Dimethyladenosine trans 95.2 0.017 5.8E-07 59.4 5.1 75 563-651 47-121 (271)
128 2nxc_A L11 mtase, ribosomal pr 95.1 0.022 7.6E-07 56.8 5.8 75 562-649 119-193 (254)
129 2xvm_A Tellurite resistance pr 95.1 0.049 1.7E-06 50.4 7.8 74 564-649 33-106 (199)
130 3tqs_A Ribosomal RNA small sub 95.1 0.019 6.4E-07 58.4 5.1 99 539-649 5-105 (255)
131 1veg_A NEDD8 ultimate buster-1 95.1 0.017 5.8E-07 50.3 4.0 38 54-92 32-69 (83)
132 3gru_A Dimethyladenosine trans 95.1 0.024 8.2E-07 59.0 6.0 97 540-651 27-125 (295)
133 1i1n_A Protein-L-isoaspartate 95.0 0.042 1.5E-06 52.6 7.3 91 554-653 68-164 (226)
134 3q87_B N6 adenine specific DNA 95.0 0.015 5.2E-07 54.2 3.8 69 564-654 24-92 (170)
135 3ihp_A Ubiquitin carboxyl-term 94.9 0.081 2.8E-06 62.5 10.6 106 53-178 654-759 (854)
136 2cos_A Serine/threonine protei 94.9 0.023 8E-07 45.7 4.1 39 137-176 9-47 (54)
137 3ldg_A Putative uncharacterize 94.9 0.042 1.4E-06 59.1 7.5 79 563-650 194-310 (384)
138 3l8d_A Methyltransferase; stru 94.9 0.027 9.3E-07 54.0 5.5 80 554-647 44-123 (242)
139 3cgg_A SAM-dependent methyltra 94.9 0.043 1.5E-06 50.2 6.5 76 561-652 44-119 (195)
140 4azs_A Methyltransferase WBDD; 94.9 0.016 5.6E-07 64.7 4.4 81 516-609 29-109 (569)
141 2ih2_A Modification methylase 94.8 0.0098 3.3E-07 62.6 2.3 96 539-655 16-113 (421)
142 1z96_A DNA-damage, UBA-domain 94.8 0.02 6.9E-07 42.0 3.4 34 54-88 7-40 (40)
143 2dkl_A Trinucleotide repeat co 94.8 0.032 1.1E-06 48.6 5.0 40 137-178 21-60 (85)
144 3sm3_A SAM-dependent methyltra 94.8 0.042 1.4E-06 52.1 6.3 83 557-650 24-111 (235)
145 3njr_A Precorrin-6Y methylase; 94.7 0.069 2.4E-06 51.4 7.9 75 563-648 55-130 (204)
146 1qam_A ERMC' methyltransferase 94.7 0.049 1.7E-06 54.3 7.0 76 563-651 30-105 (244)
147 2knz_A Ubiquilin-4; cytoplasm, 94.7 0.032 1.1E-06 44.2 4.5 36 54-90 14-50 (53)
148 1yzh_A TRNA (guanine-N(7)-)-me 94.7 0.049 1.7E-06 52.1 6.7 82 563-651 41-122 (214)
149 1wiv_A UBP14, ubiquitin-specif 94.7 0.02 6.9E-07 48.4 3.5 37 54-91 32-68 (73)
150 2jy5_A Ubiquilin-1; UBA, alter 94.6 0.023 7.9E-07 44.9 3.5 35 54-89 15-50 (52)
151 2d9s_A CBL E3 ubiquitin protei 94.6 0.047 1.6E-06 43.8 5.1 38 54-92 12-49 (53)
152 3e23_A Uncharacterized protein 94.6 0.075 2.6E-06 50.2 7.6 70 561-648 41-110 (211)
153 2qm3_A Predicted methyltransfe 94.6 0.064 2.2E-06 56.6 7.7 80 564-652 173-253 (373)
154 2kw5_A SLR1183 protein; struct 94.5 0.052 1.8E-06 50.8 6.3 73 562-647 29-101 (202)
155 3mb5_A SAM-dependent methyltra 94.5 0.073 2.5E-06 51.9 7.5 79 563-651 93-173 (255)
156 1m6y_A S-adenosyl-methyltransf 94.5 0.064 2.2E-06 55.9 7.5 84 564-652 27-110 (301)
157 1l3i_A Precorrin-6Y methyltran 94.4 0.08 2.7E-06 48.3 7.2 79 563-652 33-112 (192)
158 1vbf_A 231AA long hypothetical 94.4 0.083 2.8E-06 50.6 7.6 78 563-653 70-147 (231)
159 3dou_A Ribosomal RNA large sub 94.4 0.051 1.7E-06 52.1 6.0 77 561-651 23-102 (191)
160 2dai_A Ubadc1, ubiquitin assoc 94.4 0.057 2E-06 46.8 5.6 39 52-91 30-68 (83)
161 3pfg_A N-methyltransferase; N, 94.3 0.036 1.2E-06 54.4 4.8 76 556-648 43-118 (263)
162 1y8c_A S-adenosylmethionine-de 94.3 0.074 2.5E-06 50.8 6.8 74 562-648 36-109 (246)
163 3kkz_A Uncharacterized protein 94.2 0.093 3.2E-06 51.6 7.6 81 562-652 45-126 (267)
164 2okc_A Type I restriction enzy 94.2 0.24 8.1E-06 53.6 11.4 84 563-655 171-268 (445)
165 2dkl_A Trinucleotide repeat co 94.2 0.031 1E-06 48.7 3.5 39 52-91 22-60 (85)
166 1wzn_A SAM-dependent methyltra 94.2 0.097 3.3E-06 50.7 7.5 71 563-646 41-111 (252)
167 1dv0_A DNA repair protein HHR2 94.1 0.014 4.6E-07 45.5 1.1 37 138-176 5-41 (47)
168 2oyr_A UPF0341 protein YHIQ; a 94.1 0.056 1.9E-06 55.2 5.9 41 565-608 90-130 (258)
169 4dcm_A Ribosomal RNA large sub 94.0 0.067 2.3E-06 57.0 6.6 78 564-651 223-303 (375)
170 3g5l_A Putative S-adenosylmeth 94.0 0.064 2.2E-06 52.1 5.9 73 563-648 44-116 (253)
171 3ggd_A SAM-dependent methyltra 94.0 0.14 4.8E-06 49.5 8.2 85 559-652 52-136 (245)
172 3s1s_A Restriction endonucleas 93.9 0.061 2.1E-06 63.5 6.5 85 560-651 318-410 (878)
173 2dah_A Ubiquilin-3; UBA domain 93.9 0.066 2.3E-06 42.8 4.7 40 137-178 9-49 (54)
174 3bgv_A MRNA CAP guanine-N7 met 93.9 0.062 2.1E-06 54.5 5.8 92 553-648 24-122 (313)
175 2bwb_A Ubiquitin-like protein 93.9 0.092 3.2E-06 40.6 5.4 38 137-176 7-45 (46)
176 1wr1_B Ubiquitin-like protein 93.9 0.078 2.7E-06 43.1 5.2 39 137-177 17-56 (58)
177 1dl5_A Protein-L-isoaspartate 93.9 0.1 3.6E-06 53.5 7.5 83 563-653 75-157 (317)
178 2ar0_A M.ecoki, type I restric 93.9 0.11 3.8E-06 58.1 8.2 86 563-655 169-276 (541)
179 3f4k_A Putative methyltransfer 93.9 0.16 5.6E-06 49.2 8.5 80 562-651 45-125 (257)
180 3ou2_A SAM-dependent methyltra 93.8 0.082 2.8E-06 49.6 6.0 79 552-647 36-114 (218)
181 3dh0_A SAM dependent methyltra 93.7 0.096 3.3E-06 49.5 6.4 79 562-648 36-114 (219)
182 3duw_A OMT, O-methyltransferas 93.7 0.11 3.8E-06 49.6 6.8 83 563-652 58-145 (223)
183 1o54_A SAM-dependent O-methylt 93.7 0.12 4.1E-06 51.6 7.2 79 563-651 112-192 (277)
184 1jsx_A Glucose-inhibited divis 93.6 0.11 3.8E-06 48.8 6.6 71 564-646 66-138 (207)
185 1o9g_A RRNA methyltransferase; 93.6 0.057 1.9E-06 53.0 4.6 46 563-608 51-97 (250)
186 4htf_A S-adenosylmethionine-de 93.5 0.1 3.6E-06 51.8 6.5 79 561-649 66-145 (285)
187 1yb2_A Hypothetical protein TA 93.5 0.15 5.1E-06 51.0 7.6 76 562-649 109-188 (275)
188 3lcc_A Putative methyl chlorid 93.4 0.081 2.8E-06 50.9 5.4 73 565-649 68-141 (235)
189 2yvl_A TRMI protein, hypotheti 93.4 0.17 5.8E-06 48.8 7.7 76 563-649 91-167 (248)
190 1vej_A Riken cDNA 4931431F19; 93.4 0.083 2.8E-06 45.0 4.7 40 137-178 29-69 (74)
191 2zig_A TTHA0409, putative modi 93.4 0.097 3.3E-06 53.6 6.2 45 563-610 235-279 (297)
192 2ooa_A E3 ubiquitin-protein li 93.4 0.13 4.4E-06 41.1 5.4 26 139-164 13-38 (52)
193 2ooa_A E3 ubiquitin-protein li 93.3 0.09 3.1E-06 42.0 4.4 36 54-90 14-49 (52)
194 2pwy_A TRNA (adenine-N(1)-)-me 93.2 0.19 6.4E-06 48.8 7.7 80 563-651 96-177 (258)
195 1mjf_A Spermidine synthase; sp 93.2 0.067 2.3E-06 54.4 4.7 78 562-650 74-162 (281)
196 2r6z_A UPF0341 protein in RSP 93.2 0.065 2.2E-06 54.3 4.5 81 563-650 83-171 (258)
197 3mgg_A Methyltransferase; NYSG 93.2 0.19 6.7E-06 49.4 7.9 81 561-650 35-115 (276)
198 3vc1_A Geranyl diphosphate 2-C 93.2 0.15 5.1E-06 51.8 7.2 74 562-646 116-191 (312)
199 1xxl_A YCGJ protein; structura 93.2 0.14 4.9E-06 49.7 6.8 77 563-650 21-97 (239)
200 3h2b_A SAM-dependent methyltra 93.2 0.13 4.5E-06 48.1 6.3 69 564-648 42-110 (203)
201 1pjz_A Thiopurine S-methyltran 93.2 0.15 5E-06 48.8 6.7 75 562-646 21-107 (203)
202 2fca_A TRNA (guanine-N(7)-)-me 93.1 0.36 1.2E-05 46.5 9.4 80 563-651 38-119 (213)
203 3dtn_A Putative methyltransfer 93.1 0.13 4.5E-06 49.2 6.3 77 562-652 43-121 (234)
204 3hm2_A Precorrin-6Y C5,15-meth 93.0 0.2 6.9E-06 45.5 7.1 82 563-652 25-106 (178)
205 4fp9_B Mterf domain-containing 93.0 0.57 2E-05 49.8 11.6 27 52-78 47-73 (335)
206 2yqz_A Hypothetical protein TT 93.0 0.17 5.9E-06 48.9 7.0 77 561-649 37-113 (263)
207 1dv0_A DNA repair protein HHR2 92.9 0.047 1.6E-06 42.4 2.3 35 54-89 7-41 (47)
208 1xdz_A Methyltransferase GIDB; 92.9 0.097 3.3E-06 51.1 5.0 80 563-648 70-149 (240)
209 3v97_A Ribosomal RNA large sub 92.9 0.15 5E-06 59.0 7.3 82 563-650 190-313 (703)
210 2p7i_A Hypothetical protein; p 92.8 0.12 3.9E-06 49.3 5.3 78 553-647 33-110 (250)
211 3jwh_A HEN1; methyltransferase 92.8 0.26 8.9E-06 46.8 7.8 77 563-648 29-110 (217)
212 3ofk_A Nodulation protein S; N 92.7 0.093 3.2E-06 49.7 4.6 71 563-647 51-121 (216)
213 2gb4_A Thiopurine S-methyltran 92.7 0.16 5.4E-06 51.0 6.5 74 563-646 68-158 (252)
214 3bzb_A Uncharacterized protein 92.7 0.29 1E-05 49.4 8.5 44 563-608 79-123 (281)
215 3adn_A Spermidine synthase; am 92.6 0.17 5.8E-06 52.2 6.7 81 562-650 82-167 (294)
216 3iv6_A Putative Zn-dependent a 92.6 0.14 4.8E-06 52.3 6.0 80 562-653 44-123 (261)
217 3ntv_A MW1564 protein; rossman 92.5 0.21 7.1E-06 48.7 6.9 83 563-652 71-154 (232)
218 2ex4_A Adrenal gland protein A 92.5 0.088 3E-06 51.0 4.2 75 563-647 79-153 (241)
219 2bwb_A Ubiquitin-like protein 92.5 0.11 3.7E-06 40.2 3.8 35 54-89 10-45 (46)
220 1inl_A Spermidine synthase; be 92.5 0.12 4.1E-06 53.0 5.3 81 562-651 89-174 (296)
221 2yxe_A Protein-L-isoaspartate 92.5 0.25 8.5E-06 46.7 7.2 83 563-653 77-159 (215)
222 3g2m_A PCZA361.24; SAM-depende 92.4 0.17 5.7E-06 50.9 6.2 70 565-646 84-156 (299)
223 3hem_A Cyclopropane-fatty-acyl 92.4 0.25 8.6E-06 49.6 7.5 73 562-648 71-145 (302)
224 2d9s_A CBL E3 ubiquitin protei 92.4 0.2 6.8E-06 40.2 5.3 26 139-164 11-36 (53)
225 3dxy_A TRNA (guanine-N(7)-)-me 92.4 0.16 5.5E-06 49.7 5.9 83 563-651 34-116 (218)
226 3kr9_A SAM-dependent methyltra 92.4 0.27 9.3E-06 49.3 7.6 53 558-611 10-62 (225)
227 3d2l_A SAM-dependent methyltra 92.4 0.15 5.1E-06 48.8 5.5 73 561-647 31-103 (243)
228 1ri5_A MRNA capping enzyme; me 92.3 0.16 5.6E-06 50.0 5.9 78 562-648 63-141 (298)
229 1vej_A Riken cDNA 4931431F19; 92.3 0.16 5.6E-06 43.2 5.0 36 54-90 32-68 (74)
230 1vl5_A Unknown conserved prote 92.2 0.24 8.2E-06 48.4 6.9 91 547-650 23-113 (260)
231 3tr6_A O-methyltransferase; ce 92.2 0.28 9.7E-06 46.7 7.3 81 564-651 65-151 (225)
232 1g8a_A Fibrillarin-like PRE-rR 92.2 0.38 1.3E-05 46.0 8.2 79 563-649 73-152 (227)
233 3m33_A Uncharacterized protein 92.1 0.23 7.8E-06 47.9 6.6 73 562-649 47-120 (226)
234 3r0q_C Probable protein argini 92.1 0.25 8.7E-06 52.2 7.5 74 563-648 63-137 (376)
235 3jwg_A HEN1, methyltransferase 92.1 0.32 1.1E-05 46.1 7.4 46 563-609 29-74 (219)
236 2cp8_A NEXT to BRCA1 gene 1 pr 92.1 0.085 2.9E-06 42.5 2.8 38 54-92 12-50 (54)
237 1iy9_A Spermidine synthase; ro 92.1 0.16 5.5E-06 51.5 5.7 80 562-650 74-158 (275)
238 1jg1_A PIMT;, protein-L-isoasp 92.0 0.29 1E-05 47.4 7.3 81 563-653 91-171 (235)
239 3g89_A Ribosomal RNA small sub 92.0 0.16 5.5E-06 50.7 5.5 79 562-646 79-157 (249)
240 3hnr_A Probable methyltransfer 92.0 0.3 1E-05 46.2 7.1 72 563-650 45-116 (220)
241 2qfm_A Spermine synthase; sper 91.9 0.2 6.7E-06 54.0 6.3 83 562-650 187-277 (364)
242 1fbn_A MJ fibrillarin homologu 91.9 0.31 1.1E-05 47.2 7.2 77 563-648 74-151 (230)
243 1zx0_A Guanidinoacetate N-meth 91.9 0.17 5.9E-06 49.0 5.4 75 563-646 60-134 (236)
244 1r18_A Protein-L-isoaspartate( 91.8 0.2 6.9E-06 48.2 5.8 91 554-653 75-176 (227)
245 2y1w_A Histone-arginine methyl 91.8 0.28 9.6E-06 51.2 7.2 75 563-649 50-125 (348)
246 1i9g_A Hypothetical protein RV 91.7 0.32 1.1E-05 48.1 7.2 80 563-651 99-182 (280)
247 3u81_A Catechol O-methyltransf 91.7 0.2 6.9E-06 48.1 5.6 83 564-653 59-147 (221)
248 3lkd_A Type I restriction-modi 91.7 0.14 4.6E-06 57.7 5.0 84 563-651 221-308 (542)
249 3bxo_A N,N-dimethyltransferase 91.6 0.15 5E-06 48.7 4.5 73 557-646 34-106 (239)
250 2gpy_A O-methyltransferase; st 91.6 0.29 9.8E-06 47.2 6.6 84 563-652 54-138 (233)
251 2pjd_A Ribosomal RNA small sub 91.5 0.38 1.3E-05 49.9 7.8 76 564-651 197-272 (343)
252 3tfw_A Putative O-methyltransf 91.4 0.22 7.6E-06 49.2 5.7 82 563-652 63-148 (248)
253 1wj7_A Hypothetical protein (R 91.4 0.23 8E-06 44.8 5.2 39 137-177 39-78 (104)
254 3ujc_A Phosphoethanolamine N-m 91.4 0.26 8.8E-06 47.7 6.0 74 562-648 54-128 (266)
255 3lec_A NADB-rossmann superfami 91.4 0.38 1.3E-05 48.5 7.4 52 559-611 17-68 (230)
256 2dna_A Unnamed protein product 91.2 0.21 7.4E-06 41.8 4.5 41 137-179 19-60 (67)
257 3q7e_A Protein arginine N-meth 91.1 0.35 1.2E-05 50.6 7.2 75 563-648 66-141 (349)
258 1wr1_B Ubiquitin-like protein 91.1 0.18 6.1E-06 40.9 3.8 36 54-90 20-56 (58)
259 3gnl_A Uncharacterized protein 91.1 0.33 1.1E-05 49.4 6.7 51 559-610 17-67 (244)
260 2fyt_A Protein arginine N-meth 90.9 0.32 1.1E-05 50.7 6.7 75 563-648 64-139 (340)
261 3uzu_A Ribosomal RNA small sub 90.9 0.15 5.3E-06 52.3 4.2 80 563-649 42-123 (279)
262 3ftd_A Dimethyladenosine trans 90.8 0.13 4.3E-06 51.9 3.2 76 563-651 31-106 (249)
263 3bkw_A MLL3908 protein, S-aden 90.7 0.48 1.6E-05 45.2 7.2 74 563-649 43-116 (243)
264 2avd_A Catechol-O-methyltransf 90.7 0.54 1.9E-05 44.8 7.5 85 563-651 69-156 (229)
265 1xtp_A LMAJ004091AAA; SGPP, st 90.6 0.26 8.7E-06 47.6 5.2 74 563-648 93-166 (254)
266 2fk8_A Methoxy mycolic acid sy 90.6 0.5 1.7E-05 47.7 7.6 73 562-648 89-163 (318)
267 2avn_A Ubiquinone/menaquinone 90.6 0.3 1E-05 48.0 5.7 70 562-648 53-122 (260)
268 3k9o_A Ubiquitin-conjugating e 90.6 0.28 9.5E-06 48.2 5.5 38 137-176 163-200 (201)
269 2dah_A Ubiquilin-3; UBA domain 90.5 0.36 1.2E-05 38.5 5.0 37 54-91 12-49 (54)
270 2gs9_A Hypothetical protein TT 90.4 0.27 9.3E-06 46.2 5.1 74 558-649 31-104 (211)
271 1nkv_A Hypothetical protein YJ 90.4 0.54 1.8E-05 45.4 7.3 73 562-646 35-109 (256)
272 3dlc_A Putative S-adenosyl-L-m 90.4 0.59 2E-05 43.5 7.3 74 566-650 46-121 (219)
273 3e8s_A Putative SAM dependent 90.3 0.31 1.1E-05 45.6 5.3 75 564-651 53-127 (227)
274 1kpg_A CFA synthase;, cyclopro 90.2 0.61 2.1E-05 46.2 7.6 72 562-647 63-136 (287)
275 3cc8_A Putative methyltransfer 90.2 0.43 1.5E-05 44.8 6.2 72 562-649 31-102 (230)
276 1yub_A Ermam, rRNA methyltrans 90.2 0.03 1E-06 55.4 -1.9 77 563-652 29-105 (245)
277 3khk_A Type I restriction-modi 90.1 0.31 1.1E-05 54.7 6.0 80 565-651 246-340 (544)
278 3dr5_A Putative O-methyltransf 90.1 0.28 9.4E-06 48.1 4.9 82 564-652 57-141 (221)
279 1g6q_1 HnRNP arginine N-methyl 90.0 0.57 1.9E-05 48.5 7.5 75 564-649 39-114 (328)
280 2ipx_A RRNA 2'-O-methyltransfe 90.0 0.54 1.8E-05 45.4 6.9 79 563-649 77-156 (233)
281 1ej0_A FTSJ; methyltransferase 89.9 0.27 9.2E-06 43.7 4.4 80 562-654 21-102 (180)
282 1g60_A Adenine-specific methyl 89.9 0.35 1.2E-05 48.5 5.7 43 563-608 212-254 (260)
283 2p35_A Trans-aconitate 2-methy 89.9 0.57 2E-05 45.2 7.0 72 563-651 33-106 (259)
284 2p8j_A S-adenosylmethionine-de 89.8 0.78 2.7E-05 42.8 7.6 74 563-648 23-97 (209)
285 4gek_A TRNA (CMO5U34)-methyltr 89.8 0.48 1.7E-05 47.7 6.6 75 561-648 68-147 (261)
286 4hc4_A Protein arginine N-meth 89.7 0.48 1.7E-05 50.9 6.9 70 565-646 85-155 (376)
287 3dli_A Methyltransferase; PSI- 89.6 0.29 9.8E-06 47.4 4.6 44 559-605 37-80 (240)
288 2juj_A E3 ubiquitin-protein li 89.6 0.5 1.7E-05 38.2 5.1 29 137-165 7-35 (56)
289 3ocj_A Putative exported prote 89.5 0.28 9.5E-06 49.6 4.5 77 561-646 116-193 (305)
290 3g5t_A Trans-aconitate 3-methy 89.4 0.69 2.4E-05 46.3 7.4 83 563-649 36-122 (299)
291 2b25_A Hypothetical protein; s 89.2 0.62 2.1E-05 47.9 7.0 82 563-651 105-198 (336)
292 3b3j_A Histone-arginine methyl 89.2 0.48 1.7E-05 52.2 6.5 75 563-649 158-233 (480)
293 2o07_A Spermidine synthase; st 89.1 0.3 1E-05 50.4 4.6 81 562-650 94-178 (304)
294 3g07_A 7SK snRNA methylphospha 89.1 0.7 2.4E-05 46.7 7.2 51 554-607 37-89 (292)
295 3gu3_A Methyltransferase; alph 88.8 0.44 1.5E-05 47.6 5.4 74 562-648 21-97 (284)
296 2i7c_A Spermidine synthase; tr 88.6 0.44 1.5E-05 48.5 5.3 80 562-649 77-160 (283)
297 2oo9_A E3 ubiquitin-protein li 88.3 0.89 3E-05 35.5 5.5 27 138-164 5-31 (46)
298 2o57_A Putative sarcosine dime 88.0 0.89 3E-05 45.2 7.0 75 562-647 81-157 (297)
299 2juj_A E3 ubiquitin-protein li 87.9 0.46 1.6E-05 38.4 3.9 38 54-92 10-47 (56)
300 2cwb_A Chimera of immunoglobul 87.9 0.65 2.2E-05 42.2 5.3 39 137-177 66-105 (108)
301 1uir_A Polyamine aminopropyltr 87.8 0.47 1.6E-05 49.0 5.0 81 562-650 76-161 (314)
302 3bwc_A Spermidine synthase; SA 87.6 0.44 1.5E-05 49.0 4.6 81 562-649 94-178 (304)
303 2hnk_A SAM-dependent O-methylt 87.5 0.9 3.1E-05 44.1 6.6 49 563-611 60-108 (239)
304 4hg2_A Methyltransferase type 87.5 0.24 8.2E-06 50.0 2.5 74 557-647 33-106 (257)
305 2pt6_A Spermidine synthase; tr 87.4 0.48 1.6E-05 49.3 4.8 80 562-649 115-198 (321)
306 2nyu_A Putative ribosomal RNA 87.4 0.76 2.6E-05 42.5 5.7 77 562-650 21-107 (196)
307 3bus_A REBM, methyltransferase 87.4 1.1 3.8E-05 43.7 7.2 77 563-650 61-139 (273)
308 2plw_A Ribosomal RNA methyltra 87.2 1.1 3.9E-05 41.6 6.8 38 562-599 21-59 (201)
309 2oo9_A E3 ubiquitin-protein li 87.2 0.71 2.4E-05 36.0 4.3 36 55-91 8-43 (46)
310 3ihp_A Ubiquitin carboxyl-term 87.2 1.8 6E-05 51.3 9.9 103 138-248 653-757 (854)
311 3ccf_A Cyclopropane-fatty-acyl 87.1 1.1 3.6E-05 44.4 7.0 70 563-649 57-126 (279)
312 1ixs_A Holliday junction DNA h 87.0 1.2 4E-05 36.5 5.9 39 137-175 17-58 (62)
313 1qyr_A KSGA, high level kasuga 86.8 0.82 2.8E-05 46.1 6.0 82 563-652 21-102 (252)
314 3c3y_A Pfomt, O-methyltransfer 86.2 0.82 2.8E-05 44.9 5.5 82 564-652 71-159 (237)
315 3ckk_A TRNA (guanine-N(7)-)-me 86.2 0.87 3E-05 45.0 5.7 85 563-653 46-136 (235)
316 1p91_A Ribosomal RNA large sub 86.1 0.9 3.1E-05 44.5 5.8 71 562-648 84-156 (269)
317 3thr_A Glycine N-methyltransfe 86.1 1.6 5.5E-05 43.1 7.6 76 563-646 57-136 (293)
318 2b2c_A Spermidine synthase; be 86.0 0.71 2.4E-05 48.0 5.2 80 562-649 107-190 (314)
319 4fzv_A Putative methyltransfer 85.9 1.9 6.7E-05 46.0 8.6 87 563-653 148-236 (359)
320 3c3p_A Methyltransferase; NP_9 85.6 1.3 4.6E-05 41.8 6.5 78 564-652 57-138 (210)
321 3fzg_A 16S rRNA methylase; met 85.6 0.5 1.7E-05 47.1 3.5 48 562-610 48-95 (200)
322 3i9f_A Putative type 11 methyl 85.6 1.8 6E-05 39.2 7.0 43 562-607 16-58 (170)
323 3k9o_A Ubiquitin-conjugating e 85.4 0.73 2.5E-05 45.3 4.6 35 54-89 166-200 (201)
324 2vdw_A Vaccinia virus capping 85.3 2 7E-05 44.0 8.2 47 562-610 47-93 (302)
325 2dna_A Unnamed protein product 85.3 0.71 2.4E-05 38.6 3.8 38 54-92 22-60 (67)
326 3d5l_A Regulatory protein RECX 85.1 2.5 8.5E-05 42.0 8.5 130 52-239 79-212 (221)
327 1sui_A Caffeoyl-COA O-methyltr 85.1 0.76 2.6E-05 45.6 4.7 83 563-652 79-168 (247)
328 1xj5_A Spermidine synthase 1; 84.8 0.66 2.2E-05 48.8 4.3 81 562-649 119-203 (334)
329 3gjy_A Spermidine synthase; AP 84.7 0.65 2.2E-05 49.0 4.1 76 564-648 90-167 (317)
330 2i62_A Nicotinamide N-methyltr 84.5 0.64 2.2E-05 44.9 3.8 45 563-609 56-100 (265)
331 3cbg_A O-methyltransferase; cy 84.4 1.6 5.4E-05 42.5 6.5 84 564-651 73-159 (232)
332 2cp8_A NEXT to BRCA1 gene 1 pr 84.2 1.7 5.7E-05 35.0 5.3 40 137-178 9-49 (54)
333 3uwp_A Histone-lysine N-methyl 83.9 2 6.8E-05 47.4 7.7 80 563-650 173-262 (438)
334 3dfg_A Xcrecx, regulatory prot 83.8 11 0.00036 35.7 11.8 119 53-232 36-158 (162)
335 3mq2_A 16S rRNA methyltransfer 83.1 0.75 2.6E-05 43.6 3.6 40 563-603 27-66 (218)
336 2cwb_A Chimera of immunoglobul 83.0 1.2 4E-05 40.5 4.5 35 54-89 69-104 (108)
337 2cmg_A Spermidine synthase; tr 82.6 0.71 2.4E-05 46.7 3.3 73 562-648 71-147 (262)
338 3fpf_A Mtnas, putative unchara 82.5 2.4 8.2E-05 44.4 7.3 72 562-646 121-194 (298)
339 3r3h_A O-methyltransferase, SA 82.3 0.55 1.9E-05 46.5 2.3 82 564-652 61-148 (242)
340 3e3v_A Regulatory protein RECX 81.8 7 0.00024 37.5 9.8 126 52-235 36-165 (177)
341 3e46_A Ubiquitin-conjugating e 81.8 1.7 5.7E-05 44.6 5.7 38 137-176 215-252 (253)
342 2oo3_A Protein involved in cat 81.7 0.54 1.8E-05 49.1 2.1 90 550-650 80-169 (283)
343 3ege_A Putative methyltransfer 80.4 1 3.6E-05 44.2 3.5 72 562-650 33-104 (261)
344 1vlm_A SAM-dependent methyltra 80.2 1.2 4.1E-05 42.4 3.8 70 556-648 41-110 (219)
345 3m66_A Mterf3, mterf domain-co 79.0 9.9 0.00034 38.1 10.3 89 52-162 6-101 (270)
346 3htx_A HEN1; HEN1, small RNA m 78.9 2.1 7.1E-05 51.1 5.9 44 563-606 721-764 (950)
347 1wj7_A Hypothetical protein (R 78.8 1.3 4.3E-05 40.1 3.2 38 211-250 41-79 (104)
348 2qsf_X RAD23, UV excision repa 78.1 2.5 8.6E-05 41.2 5.3 38 137-176 130-167 (171)
349 3orh_A Guanidinoacetate N-meth 77.8 1.7 5.7E-05 42.6 4.1 76 562-646 59-134 (236)
350 3ufb_A Type I restriction-modi 77.6 2.1 7.3E-05 47.7 5.3 83 564-650 218-312 (530)
351 3id6_C Fibrillarin-like rRNA/T 77.3 4.3 0.00015 40.6 7.0 80 562-649 75-155 (232)
352 4fsd_A Arsenic methyltransfera 77.3 2.2 7.6E-05 44.8 5.1 80 563-648 83-174 (383)
353 3hp7_A Hemolysin, putative; st 75.4 1.6 5.6E-05 45.3 3.4 37 563-601 85-121 (291)
354 2oxt_A Nucleoside-2'-O-methylt 74.8 1.5 5E-05 44.6 2.8 35 561-599 72-106 (265)
355 2r3s_A Uncharacterized protein 74.2 4.6 0.00016 40.7 6.4 79 562-653 164-245 (335)
356 1boo_A Protein (N-4 cytosine-s 73.6 1.8 6.2E-05 44.9 3.2 43 563-608 252-294 (323)
357 1tte_A Ubiquitin-conjugating e 73.5 1.9 6.5E-05 43.1 3.2 36 53-88 171-214 (215)
358 1u2z_A Histone-lysine N-methyl 73.2 6.8 0.00023 42.9 7.7 41 562-604 241-282 (433)
359 1ixs_A Holliday junction DNA h 72.9 3.3 0.00011 33.8 3.9 34 211-244 19-55 (62)
360 2kna_A Baculoviral IAP repeat- 72.5 4 0.00014 36.5 4.8 41 52-92 28-74 (104)
361 2a14_A Indolethylamine N-methy 72.4 1 3.5E-05 44.6 0.9 45 563-609 55-99 (263)
362 4df3_A Fibrillarin-like rRNA/T 72.0 10 0.00035 38.1 8.1 82 562-651 76-158 (233)
363 2zfu_A Nucleomethylin, cerebra 71.7 3.6 0.00012 38.7 4.5 58 562-648 66-123 (215)
364 1tte_A Ubiquitin-conjugating e 71.7 3.2 0.00011 41.4 4.4 28 138-165 170-197 (215)
365 1nt2_A Fibrillarin-like PRE-rR 71.2 6.3 0.00022 38.0 6.2 78 562-647 56-133 (210)
366 3bkx_A SAM-dependent methyltra 70.5 4.8 0.00017 39.2 5.3 81 563-650 43-132 (275)
367 3opn_A Putative hemolysin; str 69.8 2.6 9E-05 41.6 3.3 40 562-603 36-75 (232)
368 1qzz_A RDMB, aclacinomycin-10- 69.8 14 0.00046 38.0 8.8 78 562-651 181-259 (374)
369 1x19_A CRTF-related protein; m 65.6 14 0.00046 38.1 7.7 64 561-626 188-252 (359)
370 1tw3_A COMT, carminomycin 4-O- 65.4 16 0.00056 37.3 8.3 77 562-650 182-259 (360)
371 3e46_A Ubiquitin-conjugating e 64.8 5.3 0.00018 40.9 4.4 36 53-89 217-252 (253)
372 1i4w_A Mitochondrial replicati 64.4 11 0.00037 40.2 6.9 60 564-627 59-118 (353)
373 3sso_A Methyltransferase; macr 63.5 6.4 0.00022 43.2 4.9 74 562-646 215-294 (419)
374 1wg8_A Predicted S-adenosylmet 63.4 12 0.0004 39.2 6.7 78 564-651 23-100 (285)
375 4e2x_A TCAB9; kijanose, tetron 62.1 5.6 0.00019 41.8 4.1 40 563-605 107-146 (416)
376 3mva_O Transcription terminati 61.9 13 0.00045 38.8 6.8 20 52-71 20-39 (343)
377 1eg2_A Modification methylase 61.7 5.6 0.00019 41.5 4.0 43 563-608 242-287 (319)
378 3c1d_A Protein ORAA, regulator 61.5 55 0.0019 30.5 10.5 120 52-232 23-156 (159)
379 3p2e_A 16S rRNA methylase; met 60.4 11 0.00038 36.7 5.6 37 563-600 24-60 (225)
380 1cuk_A RUVA protein; DNA repai 59.8 9.9 0.00034 37.6 5.2 38 137-174 160-198 (203)
381 2dhy_A CUE domain-containing p 55.4 15 0.00051 30.6 4.7 37 54-92 21-60 (67)
382 2ztd_A Holliday junction ATP-d 53.4 17 0.00057 36.3 5.6 39 137-175 164-205 (212)
383 3ua3_A Protein arginine N-meth 52.6 6.7 0.00023 45.9 3.0 80 564-648 410-503 (745)
384 4fp9_B Mterf domain-containing 52.5 23 0.00079 37.5 6.9 25 137-161 46-70 (335)
385 2xyq_A Putative 2'-O-methyl tr 52.0 13 0.00045 38.4 4.8 65 562-650 62-133 (290)
386 2pwq_A Ubiquitin conjugating e 50.6 3.3 0.00011 41.4 0.0 36 53-89 179-214 (216)
387 3dfg_A Xcrecx, regulatory prot 50.2 17 0.00057 34.3 4.8 79 50-163 83-161 (162)
388 2qsf_X RAD23, UV excision repa 49.9 12 0.0004 36.5 3.7 35 54-89 133-167 (171)
389 4auk_A Ribosomal RNA large sub 49.7 18 0.00061 39.1 5.5 74 561-652 209-282 (375)
390 3lcv_B Sisomicin-gentamicin re 49.1 12 0.00041 39.1 3.9 48 562-610 131-178 (281)
391 2kna_A Baculoviral IAP repeat- 48.7 27 0.00092 31.1 5.6 41 139-179 29-74 (104)
392 3frh_A 16S rRNA methylase; met 48.1 19 0.00064 37.1 5.1 44 562-609 104-147 (253)
393 2w84_A Peroxisomal membrane pr 46.2 27 0.00091 29.5 4.8 29 137-165 35-63 (70)
394 2wa2_A Non-structural protein 46.1 6.8 0.00023 39.9 1.5 35 561-599 80-114 (276)
395 4fs3_A Enoyl-[acyl-carrier-pro 46.0 27 0.00091 34.4 5.8 65 577-646 24-92 (256)
396 2pwq_A Ubiquitin conjugating e 45.7 4.4 0.00015 40.5 0.0 37 137-175 177-213 (216)
397 3cvo_A Methyltransferase-like 45.5 46 0.0016 32.7 7.3 58 564-626 31-92 (202)
398 3c6k_A Spermine synthase; sper 44.8 41 0.0014 36.4 7.4 43 565-609 207-249 (381)
399 2dpm_A M.dpnii 1, protein (ade 42.1 14 0.00046 38.1 3.0 45 557-606 28-73 (284)
400 3t6p_A Baculoviral IAP repeat- 41.8 22 0.00076 37.8 4.7 41 52-92 120-166 (345)
401 4gqb_A Protein arginine N-meth 41.3 31 0.0011 39.7 6.1 70 564-645 358-433 (637)
402 3mva_O Transcription terminati 41.3 37 0.0013 35.4 6.2 16 218-233 249-264 (343)
403 2g1p_A DNA adenine methylase; 41.1 11 0.00038 38.5 2.2 45 557-606 21-65 (278)
404 1cuk_A RUVA protein; DNA repai 38.6 20 0.0007 35.3 3.6 33 211-243 162-195 (203)
405 3mcz_A O-methyltransferase; ad 38.0 48 0.0016 33.7 6.4 79 563-650 179-258 (352)
406 2w84_A Peroxisomal membrane pr 37.0 30 0.001 29.2 3.8 28 211-238 37-64 (70)
407 2p41_A Type II methyltransfera 34.9 19 0.00066 37.0 2.8 32 561-596 80-111 (305)
408 1yf3_A DNA adenine methylase; 34.1 12 0.00041 37.8 1.1 45 557-607 18-62 (259)
409 4fn4_A Short chain dehydrogena 33.7 39 0.0013 34.0 4.8 63 578-646 24-90 (254)
410 3m66_A Mterf3, mterf domain-co 33.7 1.3E+02 0.0044 29.9 8.6 90 53-161 78-172 (270)
411 3e3v_A Regulatory protein RECX 32.7 52 0.0018 31.4 5.3 82 50-164 85-166 (177)
412 1ixr_A Holliday junction DNA h 32.6 9.3 0.00032 37.5 0.0 34 138-171 147-183 (191)
413 2g72_A Phenylethanolamine N-me 32.5 20 0.00068 35.4 2.4 44 563-608 71-114 (289)
414 3ff5_A PEX14P, peroxisomal bio 32.1 38 0.0013 27.2 3.5 25 137-161 30-54 (54)
415 3ged_A Short-chain dehydrogena 31.9 33 0.0011 34.4 3.9 59 578-646 19-81 (247)
416 2ztd_A Holliday junction ATP-d 30.9 36 0.0012 33.9 3.9 34 211-244 166-202 (212)
417 1xu9_A Corticosteroid 11-beta- 30.8 1.1E+02 0.0038 30.0 7.5 96 544-645 4-111 (286)
418 3d5l_A Regulatory protein RECX 30.3 24 0.00081 34.9 2.5 82 50-164 128-209 (221)
419 2ip2_A Probable phenazine-spec 29.7 55 0.0019 32.9 5.2 75 565-651 169-244 (334)
420 2bm8_A Cephalosporin hydroxyla 29.2 31 0.0011 33.6 3.1 73 564-646 82-158 (236)
421 3c1d_A Protein ORAA, regulator 29.1 55 0.0019 30.5 4.7 77 50-161 81-157 (159)
422 3o4f_A Spermidine synthase; am 28.4 86 0.0029 32.6 6.4 80 562-649 82-166 (294)
423 1wgl_A TOLL-interacting protei 27.8 54 0.0019 26.4 3.7 37 54-92 12-51 (59)
424 4g81_D Putative hexonate dehyd 25.8 69 0.0024 32.2 5.0 64 578-647 26-93 (255)
425 3ff5_A PEX14P, peroxisomal bio 24.7 52 0.0018 26.4 3.0 23 211-233 32-54 (54)
426 3oig_A Enoyl-[acyl-carrier-pro 24.0 1.1E+02 0.0037 29.6 6.0 66 578-648 26-95 (266)
427 4b79_A PA4098, probable short- 23.9 45 0.0015 33.5 3.2 57 578-646 28-84 (242)
428 2aot_A HMT, histamine N-methyl 23.4 1.6E+02 0.0056 28.9 7.2 46 563-608 52-102 (292)
429 2k4m_A TR8_protein, UPF0146 pr 22.4 50 0.0017 31.6 3.0 38 561-601 33-72 (153)
430 3gwz_A MMCR; methyltransferase 22.4 1.6E+02 0.0054 30.4 7.1 80 562-653 201-281 (369)
431 1ixr_A Holliday junction DNA h 21.0 20 0.0007 35.0 0.0 31 212-242 149-182 (191)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.92 E-value=9.3e-26 Score=233.19 Aligned_cols=105 Identities=17% Similarity=0.342 Sum_probs=92.6
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 644 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLV 644 (697)
|+||||||||||+++||++||| ++++++|+|+.|++||+.+|. ..++.+||++|+.+++ +++|||
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence 6899999999999999999998 569999999999999987542 2366799999998755 579999
Q ss_pred EecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 645 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 645 IGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
+||||||+||.+|+ ++|++|+|+.||++|+|+|+++||.+
T Consensus 66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~ 105 (331)
T 3ubt_Y 66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF 105 (331)
T ss_dssp ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence 99999999998754 46889999999999999999999964
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=224.56 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=101.1
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
..+.++++|||||||||+++||+++||++++|+++|+|+.|+.+|+.+| ++..++.+||++++.+.+.. .+
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~----~~ 82 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQE----WG 82 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHH----TC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcc----cC
Confidence 4567899999999999999999999998877999999999999998754 34456789999999887764 36
Q ss_pred CccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 640 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 640 ~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
++|||+||||||+||.+|+ +|.|++|+|++||++|+|+|+++||.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence 8999999999999999863 23588999999999999999999986
No 3
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.88 E-value=2e-23 Score=230.56 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=88.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhH---------HHh
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF---------ESL 634 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I---------~~l 634 (697)
++++|||||||||+++||+++|| ++|++||+|+.|+.+|+.+|.. .++..++.+||++++...+ ..+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 68999999999999999999997 5799999999999999987632 2344566799998874321 111
Q ss_pred hhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCC-CCccchHHHHHHHHHHhcccc
Q 005421 635 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~-D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
....+++|||+||||||+||.+|+.++. ..|++.|+. |+|++||++|+|+|+.+||.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~ 222 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM 222 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence 2345789999999999999998764320 123445764 899999999999999999864
No 4
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.88 E-value=3e-23 Score=218.90 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=97.9
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh
Q 005421 556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~V-vaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l 634 (697)
+|.++...++++|||||||||+++||+++||.++++ +++|+|+.|+.+|+.+|.. . ++.+||++++.+.|..
T Consensus 2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~- 74 (327)
T 3qv2_A 2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIES- 74 (327)
T ss_dssp ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHH-
T ss_pred CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhcc-
Confidence 466777788999999999999999999999877889 9999999999999987642 2 5679999999988764
Q ss_pred hhccCCccEEEecCCCCcc--ccCCCCCCCCCcccccccCCCCCCccchHHHHHH-HHHHh--cccc
Q 005421 635 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK 696 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPCQ~F--S~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~R-IV~~v--K~~~ 696 (697)
.++|||+||||||+| |.+|+ ++|++|+|++||++|+| +|+++ ||.+
T Consensus 75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~ 125 (327)
T 3qv2_A 75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH 125 (327)
T ss_dssp ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence 279999999999999 87644 46789999999999999 99998 7753
No 5
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.88 E-value=4.5e-23 Score=217.90 Aligned_cols=110 Identities=14% Similarity=0.231 Sum_probs=96.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
++++|||||||||+++||+++|+.+++|+++|+|+.|+++|+.+|. ...++.+||++++.+++.. ..+||
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~-----~~~D~ 72 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKK-----WNVDT 72 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhcc-----CCCCE
Confidence 5889999999999999999999988899999999999999988653 3345679999999888764 36999
Q ss_pred EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhc-cc
Q 005421 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM 695 (697)
Q Consensus 644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK-~~ 695 (697)
|+||||||+||.+|+ +.|++|+|++||++|+|+|+++| |.
T Consensus 73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~ 113 (333)
T 4h0n_A 73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVD 113 (333)
T ss_dssp EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCC
Confidence 999999999998754 45789999999999999999997 75
No 6
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.87 E-value=9.9e-23 Score=218.38 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=92.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
++++|||||||||+++||+++|| ++|++||+|+.|+++|+.+| +...++.+||++++.+.+.......+.+||
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 58999999999999999999998 56999999999999998754 344467899999998877543223468999
Q ss_pred EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
|+||||||+||.+|+ + +.+|+|+.||++|+|+|+++||.+
T Consensus 75 i~ggpPCQ~fS~ag~------------~-~~~d~r~~L~~~~~~~v~~~~P~~ 114 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGK------------G-NPDDSRNQLYMHFYRLVSELQPLF 114 (376)
T ss_dssp EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCCCCcccccC------------C-CCCCchHHHHHHHHHHHHHhCCCE
Confidence 999999999999754 2 678999999999999999999964
No 7
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=9.7e-23 Score=234.59 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH----
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES---- 633 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf----~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~---- 633 (697)
..++||||||||||||++||++||. .+++++|||+|+.|+.||+.+ ++.+.+..+||.++....+..
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N-----hp~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN-----HPQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH-----CTTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH-----CCCCceecCcHHHhhhhhhhccccc
Confidence 4579999999999999999999982 246799999999999999874 445556678887664332211
Q ss_pred --------------------------------------------------------------------------------
Q 005421 634 -------------------------------------------------------------------------------- 633 (697)
Q Consensus 634 -------------------------------------------------------------------------------- 633 (697)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------hhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 634 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 634 --------l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
.....|++|||+||||||+||.+|+++ |...++.|+|++||++|+|+|+.+||..
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~ 427 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY 427 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence 111236899999999999999987743 3345688999999999999999999963
No 8
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.86 E-value=5.6e-22 Score=208.81 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=92.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.++++|||||||||+++||+++|+ +++++||+|+.|+++|+.+|... . .+||+++..+.+ ..+|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence 468999999999999999999998 56999999999999999877432 1 689999987644 4699
Q ss_pred EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
||+||||||+||.+|+ +.|++|+|+.||++|+|+|+++||.+
T Consensus 74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~ 115 (327)
T 2c7p_A 74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV 115 (327)
T ss_dssp EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence 9999999999999764 35788999999999999999999853
No 9
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.85 E-value=6.4e-22 Score=208.97 Aligned_cols=110 Identities=16% Similarity=0.327 Sum_probs=80.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+++|||||||+||+++||+++|+.+++|++||+|+.|+++|+.+|. ...++.+||++++.+.+.. ..+||
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~-----~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDR-----LSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCc-----CCcCE
Confidence 4789999999999999999999877889999999999999988653 2335679999998776643 26999
Q ss_pred EEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhc--cc
Q 005421 644 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM 695 (697)
Q Consensus 644 VIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK--~~ 695 (697)
|+||||||+||.+|+ +.|++|+|+.||++|+|+|+++| |.
T Consensus 72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~ 113 (343)
T 1g55_A 72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPK 113 (343)
T ss_dssp EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCC
Confidence 999999999998754 45788999999999999999998 74
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.83 E-value=2.9e-21 Score=209.25 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=89.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceee----EEEeeCCHHHHHHHHHHHhhcCCC---------------C-Ccc----
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-ELV---- 618 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~----VvaVEid~~ar~t~~~~~~~~n~~---------------g-~li---- 618 (697)
.+++||||||||||+++||+++|+++++ |++||+|+.|+.+|+.+|...... + +.+
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~ 88 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG 88 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence 3589999999999999999999976666 999999999999999988642100 0 000
Q ss_pred ---------------------ccccccccChhhHHHhhhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCC-
Q 005421 619 ---------------------QIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD- 676 (697)
Q Consensus 619 ---------------------~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D- 676 (697)
..+||++++..++. +.+|||+||||||+||.+|+ +.|++|
T Consensus 89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~ 150 (403)
T 4dkj_A 89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE 150 (403)
T ss_dssp HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence 24788888776553 45899999999999998764 357776
Q ss_pred --CccchHHHHHHHHHH
Q 005421 677 --FDFSLYYEFVRVVQR 691 (697)
Q Consensus 677 --~R~~Lf~Ey~RIV~~ 691 (697)
+|+.||++|+|+|++
T Consensus 151 ~~~r~~L~~~~~rii~~ 167 (403)
T 4dkj_A 151 LNTRSGLLWEIERILEE 167 (403)
T ss_dssp GCCSGGGHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH
Confidence 999999999999998
No 11
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.77 E-value=9.7e-20 Score=215.48 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=92.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhh----HHHhh--
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK----FESLI-- 635 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~----I~~l~-- 635 (697)
..++++|||||||||+++||++||| .++++|||+|+.|+.+|+.+| ++..++.+||.+|.... +....
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 4679999999999999999999998 257999999999999998753 44556678887764221 11111
Q ss_pred --hccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 636 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 636 --~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
...+.+|||+||||||+||.+|+.. ..+.+|+|+.||++|+|+|+.+||.+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~ 664 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 664 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred hcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence 1236899999999999999987531 12356789999999999999999864
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.76 E-value=9.4e-20 Score=220.20 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=91.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH----H----h
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L 634 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~----~----l 634 (697)
.++++|||||||||+++||++||| .+++++||+|+.|+.+|+.+| +...++.+||.++....+. . .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 568999999999999999999998 367999999999999998754 3444566788766432110 0 0
Q ss_pred hhccCCccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhcccc
Q 005421 635 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 696 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~~ 696 (697)
+...+.+|||+||||||+||.+|+.. ..+.+|+|+.||++|+|+|+.+||.+
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~ 975 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 975 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence 11235799999999999999987631 12356889999999999999999863
No 13
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.75 E-value=4.3e-19 Score=179.55 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.++++||||||||| ||++|||++ + .|+++..++.+||++|+.++|+. ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 46899999999998 899999963 1 24455556789999999988764 47899
Q ss_pred EEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 643 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 643 LVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
||+||||||+||.+ ++|++||++|+|||+++||.
T Consensus 84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk 117 (230)
T 2qrv_B 84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 117 (230)
T ss_dssp EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence 99999999999975 25899999999999999996
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.72 E-value=4.6e-18 Score=182.74 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
...++++||||||||| ||++|||++ +.|+++..++.+||++|+.++|+. +++
T Consensus 186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~ 237 (386)
T 2pv0_B 186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP 237 (386)
T ss_dssp GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence 3456999999999997 999999963 135666666789999999988764 478
Q ss_pred ccEEEecCCCCccccCCCCCCCCCcccccccCCCCCCccchHHHHHHHHHHhccc
Q 005421 641 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 695 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS~anr~~R~~~~~~~g~r~gl~D~R~~Lf~Ey~RIV~~vK~~ 695 (697)
+|||+||||||+||.+ |+|++||++|+|||+++||.
T Consensus 238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk 273 (386)
T 2pv0_B 238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 273 (386)
T ss_dssp CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence 9999999999999985 36899999999999999995
No 15
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.47 E-value=7.4e-14 Score=145.59 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=117.5
Q ss_pred CCC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCCcCCCC-CCCCccccccCCCCCCC
Q 005421 369 QPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWW 446 (697)
Q Consensus 369 ~pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R~~~~p-~~p~ti~d~lp~~~~~w 446 (697)
.+| ||++|||..+-...+.+|.++|. ..+.++||+.|.||+|+|.||.++|...+....+ .+.+|++|+|...+.
T Consensus 131 ~~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~-- 207 (295)
T 2qrv_A 131 DRPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRI-- 207 (295)
T ss_dssp CCCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCE--
T ss_pred CCccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCcc--
Confidence 345 78999999998888888999996 5999999999999999999999999876522111 236899999976543
Q ss_pred CCcCcccccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCC
Q 005421 447 PSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNH 526 (697)
Q Consensus 447 p~wd~r~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~ 526 (697)
....++++|++.+..+. ..++ +.+-. ...++.+.|++.|+.||+|||++|
T Consensus 208 ---~~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~ 257 (295)
T 2qrv_A 208 ---AKFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHY 257 (295)
T ss_dssp ---ESSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTT
T ss_pred ---cccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHH
Confidence 22345556654321000 0000 00111 234678999999999999999999
Q ss_pred cccCCCChHHHHHhhhhhhccccchhhhccccccCC
Q 005421 527 TQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP 562 (697)
Q Consensus 527 Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp 562 (697)
+-..+++.++++|.+||++.++.+.++...|+.++.
T Consensus 258 ~~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~ 293 (295)
T 2qrv_A 258 TDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA 293 (295)
T ss_dssp TCCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred eeCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence 998889999999999999999999999988887653
No 16
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.36 E-value=8.9e-14 Score=147.04 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=113.7
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-chhhcccccc----ccCCCC--------CCcCCCCC
Q 005421 369 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE 430 (697)
Q Consensus 369 ~ppfF~feNV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~----hNLP~~--------~R~~~~p~ 430 (697)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|+|.|+ ..++.. ..+|..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 399999999998864 3577777777 7789999999999 9999999997 222211 11122122
Q ss_pred CCCccccccCCC-----------CCCCCCcCcccc--cce--eeccCc------ch------hHHHHHHHHHHhhhcCCC
Q 005421 431 PPMTIQDAIPHT-----------KKWWPSWDTRKH--LSC--INSGTS------GI------SQLCERFEKLLRDSRGVL 483 (697)
Q Consensus 431 ~p~ti~d~lp~~-----------~~~wp~wd~r~k--l~c--i~t~~~------~~------~~l~~ri~~~~~~~~~~~ 483 (697)
.+.+|.|+|... .+||..+|-.+. .+| .+..+. ++ ....+++-+.+....+ .
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G 269 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G 269 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence 268899998521 145555553221 122 111110 00 0011122221111100 0
Q ss_pred chhhhhHHHHhhcccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421 484 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 558 (697)
Q Consensus 484 ~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK 558 (697)
.+.+ +.+..+.++++|+|.|++||+|||.+||-...++.++|||.+||+..|++++++.+.|.
T Consensus 270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 1111 12234678999999999999999999998778999999999999999999999887763
No 17
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.31 E-value=4.7e-13 Score=141.26 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=118.4
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-chhhcccccc-ccCCCCCCcCCC--CCCCCcccccc
Q 005421 369 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI 439 (697)
Q Consensus 369 ~ppfF~feNV~~~~~-~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~-hNLP~~~R~~~~--p~~p~ti~d~l 439 (697)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|+|.|+ +.... -.+|-. +.+..+|+|+|
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L 200 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL 200 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence 799999999998865 4677787777 6789999999999 9999999994 44333 122221 11358899998
Q ss_pred CC--------CCCCCCCcCcc--------cccceeeccCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhcccceeee
Q 005421 440 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV 503 (697)
Q Consensus 440 p~--------~~~~wp~wd~r--------~kl~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~ 503 (697)
+. ..+||..|... ++-.|.|..+ ++. ....++.+.... -......++++.
T Consensus 201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~ 266 (327)
T 3qv2_A 201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL 266 (327)
T ss_dssp CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence 62 22244333321 1112222211 000 001111110000 000112356677
Q ss_pred cCcccCCCCcchhhHHhcCCCCCccc-CCCChHHHHHhhhhhhccccchhhhccccccC
Q 005421 504 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 561 (697)
Q Consensus 504 g~~~~~ple~~E~E~i~GfP~~~Tr~-~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~f 561 (697)
.+++++.|+|.|+.||+|||.+|+-. .+++.+++||.+||+..++++.++...|+++.
T Consensus 267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999977 67999999999999999999999988887653
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.25 E-value=2.4e-12 Score=118.52 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=81.6
Q ss_pred CCCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCC
Q 005421 48 SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKE 127 (697)
Q Consensus 48 ssS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e 127 (697)
|.|...++.+|++||||+++|.||++..|. |+++++|+|++++.|++.+-.+.+ .+.+......+ +.
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~----------~e~~l~~~~~~--~~ 71 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLL----------VEEALEMHQCS--EE 71 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHH----------HHHHHHHCSSC--HH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhh----------hHHHHHhccCC--cc
Confidence 345567999999999999999999999999 999999999999998755432111 00000000000 00
Q ss_pred CCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 128 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 128 ~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
. ..+ +.+.++.|+.|||+++.|.+|+.+++.+ ++.=+|+|++.
T Consensus 72 ~---~~~--~~~~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~ 114 (118)
T 4ae4_A 72 K---MME--FLQLMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMAR 114 (118)
T ss_dssp H---HHH--HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred c---ccc--CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHh
Confidence 0 111 5578999999999999999999999988 58888998864
No 19
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=98.72 E-value=3.8e-09 Score=114.68 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=111.3
Q ss_pred CCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-chhhccccccc------cCCCCCCc---CCCC
Q 005421 368 AQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIPP 429 (697)
Q Consensus 368 ~~ppfF~feNV~~~~~~----~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~h------NLP~~~R~---~~~p 429 (697)
.+|.||++|||..+-.. .|..|.+.| |.+...++||..| .||+|.|.|+= .+|..... .++.
T Consensus 176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~ 255 (403)
T 4dkj_A 176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK 255 (403)
T ss_dssp GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence 68999999999998653 566776666 6689999999999 99999999962 12221111 1112
Q ss_pred CCCCccccccCCC--CCC-------CCCc-Ccccccceeec-cCcchhHHHHHHHHHHhhhcCCCchhhhhHHHHhhccc
Q 005421 430 EPPMTIQDAIPHT--KKW-------WPSW-DTRKHLSCINS-GTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKL 498 (697)
Q Consensus 430 ~~p~ti~d~lp~~--~~~-------wp~w-d~r~kl~ci~t-~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~ 498 (697)
.++.+|.|+|... .++ .|.. .++.++.+..+ ......+ + +++....+-.++... .+...
T Consensus 256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~~~~~~~Tlt~------~~~~~ 325 (403)
T 4dkj_A 256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYNINGIGPTLTA------SGANS 325 (403)
T ss_dssp CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEETTSBBCCCCS------SSGGG
T ss_pred cccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceecCCCcccceec------CCCCc
Confidence 2367999999733 111 1110 11112211111 0000000 0 000000000000000 01111
Q ss_pred ceeeecCcccCCCCcchhhHHhcCCC-CCcccC--C-CChHHHHHhhhhhhccccchhhhccccccCCCC
Q 005421 499 NLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPGG 564 (697)
Q Consensus 499 nlvW~g~~~~~ple~~E~E~i~GfP~-~~Tr~~--~-ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~ 564 (697)
-++.....+++.|+|.|+.|++|||. +|.... + ++.+++||.+||+..++++..++..|+..+...
T Consensus 326 ~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~~ 395 (403)
T 4dkj_A 326 RIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEE 395 (403)
T ss_dssp SCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC-
T ss_pred eeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhcc
Confidence 22223457899999999999999999 677653 3 799999999999999999999998888776543
No 20
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.71 E-value=1.1e-09 Score=112.97 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=100.4
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhcccccc----ccCCCCCCcCCCCCCCC
Q 005421 367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM 433 (697)
Q Consensus 367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~p~ 433 (697)
..+|.||++|||..+-. ..+..|-+.| |.+.+.++||.+| .||+|+|.|| ..++..--+|.--....
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 45799999999987743 4566666666 6799999999999 9999999997 33333322222112256
Q ss_pred ccccccCCCC-CCCCCcCcccc--cceeecc----Cc--chhHHH-HHHHHH------HhhhcCCCc-hhhhhHHHHhhc
Q 005421 434 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG----TS--GISQLC-ERFEKL------LRDSRGVLS-SQQQRDILHRSE 496 (697)
Q Consensus 434 ti~d~lp~~~-~~wp~wd~r~k--l~ci~t~----~~--~~~~l~-~ri~~~------~~~~~~~~~-~~~q~~vl~~c~ 496 (697)
|+.|++.... .-+|.+++... ..++... .. ...... .+++.. +...+.... ....+.+...++
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK 259 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence 7777652110 01111111000 0000000 00 000000 000000 000000000 000000001111
Q ss_pred ccceee-ecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421 497 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 559 (697)
Q Consensus 497 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~ 559 (697)
..+-.+ ..++..+.|++.|+.||+|||++|+= ...+.++++|.+||+.-+....++...++.
T Consensus 260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 111111 13455799999999999999999973 145889999999999988776666555543
No 21
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=98.64 E-value=2e-08 Score=111.27 Aligned_cols=180 Identities=14% Similarity=0.229 Sum_probs=105.0
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeecccccchhhcccccc----ccCCCCCCc
Q 005421 367 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF 425 (697)
Q Consensus 367 ~~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~---------Pe~Vds~~fsaa~R~Rgy~----hNLP~~~R~ 425 (697)
..+|.||++|||..+-. ..|..|.+-| |.+. +.++||++|.||+|+|.|+ .+++....|
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F 296 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF 296 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence 45899999999999854 3566776666 4453 7899999999999999997 344433333
Q ss_pred C------CCCCCCCccccccCCCCCCCCCcCcccccceeeccCcchhHHHHHHHHHH----hhhcCC-----CchhhhhH
Q 005421 426 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV-----LSSQQQRD 490 (697)
Q Consensus 426 ~------~~p~~p~ti~d~lp~~~~~wp~wd~r~kl~ci~t~~~~~~~l~~ri~~~~----~~~~~~-----~~~~~q~~ 490 (697)
. ..|.++.||.|+|.... + .|. ..+ .++-+.+.+.- ++.+++ .+......
T Consensus 297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~~~ 361 (482)
T 3me5_A 297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSV 361 (482)
T ss_dssp CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGGGG
T ss_pred CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccccc
Confidence 2 24555678999885221 0 000 000 11111111110 010110 00000000
Q ss_pred ---HH---Hhhccccee---e-------------ecCcccCCCCcchhhHHhcCCCCCcc--cCCCChHHHHHhhhhhhc
Q 005421 491 ---IL---HRSEKLNLV---W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRHCFQ 546 (697)
Q Consensus 491 ---vl---~~c~~~nlv---W-------------~g~~~~~ple~~E~E~i~GfP~~~Tr--~~~ls~teR~k~Lgnsfq 546 (697)
+. ..+...-++ | ....+++.|+|.|+.||+|||...++ .+.++.+.+||.+||+..
T Consensus 362 ~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GNsV~ 441 (482)
T 3me5_A 362 TRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVV 441 (482)
T ss_dssp TCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHTSCC
T ss_pred ceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCCccC
Confidence 00 000000011 1 01356899999999999999953322 347899999999999999
Q ss_pred cccchhhhccccccC
Q 005421 547 TDTLGYHLSVLKSMF 561 (697)
Q Consensus 547 vdti~~hLsvLK~~f 561 (697)
++++..+...|+.++
T Consensus 442 v~v~~~i~~~l~~~l 456 (482)
T 3me5_A 442 VPVFAAVAKLLEPKI 456 (482)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999998887776543
No 22
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=98.62 E-value=2e-08 Score=105.80 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccccCC-CCCC-cCCCCCC---CC
Q 005421 368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM 433 (697)
Q Consensus 368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~hNLP-~~~R-~~~~p~~---p~ 433 (697)
.+|.||++|||..+-. ..|..|.+.| |.++..++||..| .||+|+|.|+=-.- ..+. ....|.| ..
T Consensus 111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~ 190 (327)
T 2c7p_A 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT 190 (327)
T ss_dssp HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence 5799999999998864 3567776666 6788999999999 99999999984321 1110 0122333 57
Q ss_pred ccccccCCC--CCCCC-C-----cCcccccceeeccCcchhHHHHHHHHHH--hhhc-CCCchhhhhHHHHh----hc-c
Q 005421 434 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLCERFEKLL--RDSR-GVLSSQQQRDILHR----SE-K 497 (697)
Q Consensus 434 ti~d~lp~~--~~~wp-~-----wd~r~kl~ci~t~~~~~~~l~~ri~~~~--~~~~-~~~~~~~q~~vl~~----c~-~ 497 (697)
|+.|++... ..+|. + |.-..+....... ....+.. .+.. .+.. +.+... |... +. .
T Consensus 191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~T----i~~~~~~~~~~~ 262 (327)
T 2c7p_A 191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVG--KGGQGERIYSTRGIAIT----LSAYGGGIFAKT 262 (327)
T ss_dssp CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEEST--TCCTTCEEEETTSCBCC----CCSSCCSTTTTT
T ss_pred cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhcc--CCccccccccCCCCcCc----eecCCCCccCCC
Confidence 899998421 11111 0 0000000000000 0000000 0000 0000 001000 0000 11 1
Q ss_pred cceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccc
Q 005421 498 LNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 559 (697)
Q Consensus 498 ~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~ 559 (697)
.+.+. +.+.+.|++.|..||+|||++|+- ..+.++++|.+||+.-+....++...|+.
T Consensus 263 ~~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~ 320 (327)
T 2c7p_A 263 GGYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS 320 (327)
T ss_dssp CEEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence 12232 677899999999999999999984 57999999999999988887776665544
No 23
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.58 E-value=3.5e-07 Score=84.31 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCC-CCCCC-C
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQP-KEEPN-V 131 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~-~e~~~-~ 131 (697)
.+.++++||||++.+.||+...|..+.+.-++.|+..+.-..-. +.. . .+...+...+ .+... .
T Consensus 6 ~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~----epl----~------~~~~~s~~~~~~~~l~~~ 71 (126)
T 2lbc_A 6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA----EPL----T------MPGYGGAASAGASVFGAS 71 (126)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS----CTT----C------CSSCCSSSSSCCCCSTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc----ccc----c------ccccccccccchhhhccc
Confidence 57899999999999999999999999999999999986521000 000 0 0000000000 00000 0
Q ss_pred --CchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 132 --MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 132 --~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
... ...+.+..|+.|||+++.+.+|+..+|.+ ++.=++||+..
T Consensus 72 ~~~~~-~~e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~ 116 (126)
T 2lbc_A 72 GLDNQ-PPEEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH 116 (126)
T ss_dssp SCCCC-CCHHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred ccccC-cCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 000 14568999999999999999999999764 68888999865
No 24
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.55 E-value=1.2e-08 Score=103.59 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.7
Q ss_pred ccccCCCC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCC
Q 005421 364 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 424 (697)
Q Consensus 364 ~~~~~~pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R 424 (697)
|+...++| ||++|||..|-......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus 116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~ 176 (230)
T 2qrv_B 116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS 176 (230)
T ss_dssp CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence 44344445 56899999998888899999995 89999999999999999999999998865
No 25
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.49 E-value=2.6e-07 Score=85.07 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=68.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCC----CCCCccccccccchhhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDND----GTNEDKSDETLYGTMEI 212 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~----~~~Ee~ede~~~~~m~k 212 (697)
..+.+.+|+.||||++.|.+|+.++|. + ++..++||++++.....+- ||.. .+. +.+. +. .-....++
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~--d~~~-~e~~l~~~~~~--~~-~~~~~~~~ 79 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGF--DPLL-VEEALEMHQCS--EE-KMMEFLQL 79 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTC--CHHH-HHHHHHHCSSC--HH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCC--Chhh-hHHHHHhccCC--cc-ccccCHHH
Confidence 457899999999999999999999998 3 7999999999975433210 0000 000 0000 00 00002255
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 005421 213 TLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 248 (697)
Q Consensus 213 ~l~L~~MGFseeEas~AI~rcG~da~i~eLvD~I~A 248 (697)
+..|..|||++++|.-|+-+++-| ++-=+|.+++
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~ 113 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMA 113 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 679999999999999999999987 3333444443
No 26
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.43 E-value=1.6e-07 Score=99.31 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=47.0
Q ss_pred cCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccc
Q 005421 504 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 557 (697)
Q Consensus 504 g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvL 557 (697)
.+.+.+.|++.|+.||+|||++|+=...++.++++|.+||+.-++.+..++..|
T Consensus 288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l 341 (343)
T 1g55_A 288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341 (343)
T ss_dssp HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence 466789999999999999999999655689999999999999998888766543
No 27
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.16 E-value=1.1e-05 Score=74.42 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCC--CCCCCCccccc-------cccch
Q 005421 139 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHD--NDGTNEDKSDE-------TLYGT 209 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~--d~~~~Ee~ede-------~~~~~ 209 (697)
+.+..|+.||||+..+.+|+..||..+ ++.-+++|+..+.-..- ++.... ...... ...+ ++-..
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di----~epl~~~~~~s~~~-~~~~~l~~~~~~~~~~ 78 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDF----AEPLTMPGYGGAAS-AGASVFGASGLDNQPP 78 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSS----SCTTCCSSCCSSSS-SCCCCSTTSSCCCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccc----cccccccccccccc-cchhhhcccccccCcC
Confidence 578999999999999999999998854 79999999987642111 111000 000000 0000 11123
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 005421 210 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 249 (697)
Q Consensus 210 m~k~l~L~~MGFseeEas~AI~rcG~da~i~eLvD~I~Aa 249 (697)
.+++..|+.|||++++|..|+..+|-+ ++.=++.++..
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~ 116 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH 116 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 356679999999999999999999874 66667777654
No 28
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.09 E-value=2.3e-06 Score=98.90 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=43.6
Q ss_pred cccceeeecCcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchh
Q 005421 496 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGY 552 (697)
Q Consensus 496 ~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~ 552 (697)
...+..|+-+.+.+.|+|.|+.||+|||++|+= .-+.++++|.+||+.-+.....
T Consensus 678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~a 732 (784)
T 4ft4_B 678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARA 732 (784)
T ss_dssp CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHH
T ss_pred cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHH
Confidence 334455666778899999999999999999974 5589999999999986644333
No 29
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=97.85 E-value=4.9e-06 Score=89.32 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=40.1
Q ss_pred CcccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhcccc
Q 005421 505 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 558 (697)
Q Consensus 505 ~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK 558 (697)
+.+-++|++-|.-||+|||++|.= ..+.++.+|.+||+.-+.....+-..++
T Consensus 313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~ 364 (376)
T 3g7u_A 313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLY 364 (376)
T ss_dssp SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHH
Confidence 456799999999999999999974 5678899999999986644443333333
No 30
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.64 E-value=0.00012 Score=78.02 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+-+|||||||+|++++.+.+.|. ..|++||+++.+....+.+....+. . ...++.+|+.++.. .+....+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence 467899999999999999999885 4589999999999888887654322 1 22345567654421 11112357
Q ss_pred ccEEEecCCCCcccc
Q 005421 641 IDFVICQNSVPQIPN 655 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS~ 655 (697)
+|+|+..||+...+.
T Consensus 294 fD~Ii~dpP~~~~~~ 308 (396)
T 3c0k_A 294 FDVIVMDPPKFVENK 308 (396)
T ss_dssp EEEEEECCSSTTTCS
T ss_pred CCEEEECCCCCCCCh
Confidence 999999999876553
No 31
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.62 E-value=2.8e-05 Score=84.10 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=47.4
Q ss_pred CC-ccccccccccchhhHHHHhhhhccCCceeecccccchhhccccccccCCCCCCc
Q 005421 370 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF 425 (697)
Q Consensus 370 pp-fF~feNV~~~~~~~w~~Is~fL~~i~Pe~Vds~~fsaa~R~Rgy~hNLP~~~R~ 425 (697)
+| ||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|.
T Consensus 278 ~P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~ 333 (386)
T 2pv0_B 278 GPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR 333 (386)
T ss_dssp SCCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred CCcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence 44 67899999998888889999995 899999999997666666699999999874
No 32
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.57 E-value=0.00017 Score=75.80 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||||||.|++++.+.+.|. .|++||+++.+....+.+....+... ..++.+|+.++... +....+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence 356899999999999999999986 37899999999988887765433221 23456676654221 1112357
Q ss_pred ccEEEecCCCCccc
Q 005421 641 IDFVICQNSVPQIP 654 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS 654 (697)
||+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997665
No 33
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.41 E-value=0.00037 Score=66.08 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||++||.|++++.+.+.|. ..|+++|+++.+....+.+....+. ...++.+|+.++. +.+|
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 356899999999999999999885 3588999999998888776543321 2234567776652 3699
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999976544
No 34
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.37 E-value=0.00028 Score=68.62 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||++||.|++++.|.+.|. .|+++|+++.+....+......+. ....++.+|+.++. ..+.|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence 467899999999999999999984 478999999998888776544321 11224556766543 12589
Q ss_pred cEEEecCCCCcccc
Q 005421 642 DFVICQNSVPQIPN 655 (697)
Q Consensus 642 DLVIGGpPCQ~FS~ 655 (697)
|+|+..+||..+..
T Consensus 146 D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 146 DVVFLSPPWGGPDY 159 (241)
T ss_dssp SEEEECCCCSSGGG
T ss_pred CEEEECCCcCCcch
Confidence 99999999998764
No 35
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.32 E-value=0.00032 Score=71.24 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=60.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+-+|||+|||.|++++.+.+.|.. .|+++|+++.+....+.+....+... ..++.+|+.++.. .+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~ 192 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI 192 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence 44678999999999999999999864 48999999999888887655332222 2255678876653 257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
||+|+..+|+..
T Consensus 193 fD~Vi~~~p~~~ 204 (278)
T 2frn_A 193 ADRILMGYVVRT 204 (278)
T ss_dssp EEEEEECCCSSG
T ss_pred ccEEEECCchhH
Confidence 999999999654
No 36
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.30 E-value=0.00027 Score=73.16 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421 560 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 560 ~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+..+-+|||+|||+|++++.+-+.|- ..|+++|+|+.+.+.++.+-..++-.. ..++.+|..++.. .
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~ 190 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E 190 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence 345678899999999999998888784 247899999999998887654322222 1245577766542 2
Q ss_pred CCccEEEecCCCCc
Q 005421 639 GSIDFVICQNSVPQ 652 (697)
Q Consensus 639 g~~DLVIGGpPCQ~ 652 (697)
+.+|.|+-++|+-.
T Consensus 191 ~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 191 NIADRILMGYVVRT 204 (278)
T ss_dssp SCEEEEEECCCSSG
T ss_pred cCCCEEEECCCCcH
Confidence 57999999999764
No 37
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.15 E-value=0.00022 Score=85.29 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=36.7
Q ss_pred ccCCCCcchhhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhh
Q 005421 507 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 553 (697)
Q Consensus 507 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~h 553 (697)
+.+.|++.|..||+|||++|.= .-+.+++++.+||+.-+.....+
T Consensus 946 ~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i 990 (1002)
T 3swr_A 946 QHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAI 990 (1002)
T ss_dssp SSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHH
T ss_pred cccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHH
Confidence 5588999999999999999974 55888999999999866444433
No 38
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.13 E-value=0.0011 Score=69.44 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
..+-+|||||||.|++++. .+ |. ..|+++|+++.+....+.+....+.. ...++.+|+.++. +.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~ 258 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK 258 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence 4567899999999999888 55 42 45899999999998888776543221 2234566776543 47
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
+|+|+..||...
T Consensus 259 fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 259 GNRVIMNLPKFA 270 (336)
T ss_dssp EEEEEECCTTTG
T ss_pred CcEEEECCcHhH
Confidence 999999988654
No 39
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.12 E-value=0.00049 Score=64.71 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||+||.|++++.+...|. ..|+++|+++.+....+.+....+.....++.+|+.++... + ..+.+|
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence 457899999999999997777775 35899999999998888776544322223456676544211 0 136899
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+..+|..
T Consensus 116 ~i~~~~p~~ 124 (189)
T 3p9n_A 116 LVLADPPYN 124 (189)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCC
Confidence 999988854
No 40
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.08 E-value=0.00048 Score=55.31 Aligned_cols=42 Identities=10% Similarity=0.355 Sum_probs=38.3
Q ss_pred chhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 51 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 51 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
.++-+..++.|||++++|.+|++..|....+.-+|.|+..+-
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 466788999999999999999999999999999999998653
No 41
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.04 E-value=0.00095 Score=60.57 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=57.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
++.+-+|||+.||.|.+...+.+.|.. |+++|+++.+.+..+.+....+. ...++.+|+.+.. .......+.
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~ 110 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER 110 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence 335678999999999999999999864 89999999998888776554322 2234556665421 111111247
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+..+|..
T Consensus 111 ~D~i~~~~~~~ 121 (171)
T 1ws6_A 111 FTVAFMAPPYA 121 (171)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999988854
No 42
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.02 E-value=0.00088 Score=64.40 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+||||+||.|.+++.+...|.. .|++||+++.+.+..+.+....+.....++.+|+.++.. ...+.||+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~ 125 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI 125 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence 568999999999999987777863 589999999999888877654332122244566544211 11257999
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+..+|
T Consensus 126 V~~~~p 131 (202)
T 2fpo_A 126 VFVDPP 131 (202)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999888
No 43
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.01 E-value=0.00097 Score=55.04 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=36.1
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
..+.+|+.|||+++.+.||+...|..|++.-+|+||...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 378999999999999999999999889999999999864
No 44
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.01 E-value=0.0008 Score=72.55 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||||||.|++++.+.+.|. + |++||+++.+....+.+....+... .+..+|+.++- . ...+.||
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence 467899999999999999999886 3 8999999999888887654432221 23345554321 1 1124599
Q ss_pred EEEecCCC
Q 005421 643 FVICQNSV 650 (697)
Q Consensus 643 LVIGGpPC 650 (697)
+|+--|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 45
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.0012 Score=66.85 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
...+-+|||||||.|++++.+.+.+-. ..|+++|+++.+....+.+....+.....++.+|+.++ .. .+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~ 186 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV 186 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence 345678999999999999998876421 25789999999998888766543222333567888766 32 247
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
+|+|+-.+|.
T Consensus 187 ~D~Vi~d~p~ 196 (272)
T 3a27_A 187 ADRVIMGYVH 196 (272)
T ss_dssp EEEEEECCCS
T ss_pred ceEEEECCcc
Confidence 9999999986
No 46
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.99 E-value=0.00086 Score=64.40 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=54.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC--CCCccccccccccChhhHHHhhhccCC-
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS- 640 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~--~g~li~~~DI~~Lt~~~I~~l~~~~g~- 640 (697)
+.+||||+||.|++++.+-..|. ..|+++|+++.+....+.+....+. ....++.+|+.++... + ..+.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~~ 125 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQPH 125 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSCC
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCCC
Confidence 56899999999999998777775 3589999999998888876654322 1222445565443210 0 1256
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
||+|+..+|.
T Consensus 126 fD~I~~~~~~ 135 (201)
T 2ift_A 126 FDVVFLDPPF 135 (201)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999998883
No 47
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.97 E-value=0.00088 Score=67.71 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||++||.||.+..+..+ |- ..|+++|+++...+.++.+....+.....++.+|+.++... +....+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~ 156 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF 156 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence 4678999999999999887763 31 24789999999888888765543322223445666544211 1011357
Q ss_pred ccEEEecCCCCccccC
Q 005421 641 IDFVICQNSVPQIPNS 656 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS~a 656 (697)
||+|+..+||.++...
T Consensus 157 fD~Vl~d~Pcs~~g~~ 172 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIK 172 (274)
T ss_dssp EEEEEEEECCC-----
T ss_pred CCEEEEcCCCCCCccc
Confidence 9999999999987653
No 48
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.96 E-value=0.00092 Score=55.29 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
-..+.+++.||||++.+.||+...|..+.+.=+|+|+..+
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 3478999999999999999999999999999999999854
No 49
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.96 E-value=0.0008 Score=55.47 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+.+..|+.|||+++.+.+|++++|.+ ++..+|+|++..
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 5577999999999999999999999997 799999999874
No 50
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.91 E-value=0.0013 Score=70.31 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+-+|||||||.|++++.+.+.|. +.|++||+++.+....+.+....+.. ...++.+|+.+. +..+...-..
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence 456899999999999999988885 35899999999998888776543322 223456676543 1222112247
Q ss_pred ccEEEecCCCCcc
Q 005421 641 IDFVICQNSVPQI 653 (697)
Q Consensus 641 ~DLVIGGpPCQ~F 653 (697)
||+|+--||+-+.
T Consensus 286 fD~Ii~DPP~~~~ 298 (385)
T 2b78_A 286 YDIIIIDPPSFAR 298 (385)
T ss_dssp EEEEEECCCCC--
T ss_pred ccEEEECCCCCCC
Confidence 9999999998543
No 51
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.88 E-value=0.00098 Score=54.65 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=38.4
Q ss_pred CcCCCCchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 45 NIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 45 ~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
|.++......+.+++.|||+++.+.+|++..+. |.+.-+|+|+....
T Consensus 3 ~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~ 49 (63)
T 2dak_A 3 SGSSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHID 49 (63)
T ss_dssp CCSCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 333333445789999999999999999999986 79999999998643
No 52
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.83 E-value=0.0018 Score=68.88 Aligned_cols=84 Identities=20% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||||||.|++++.+.+.|. ..|++||+++.+....+.+....+.. ...++.+|+.++.. .+....+.+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence 467899999999999999998875 35899999999998888776543211 12244566654321 121123579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+.-||+-.
T Consensus 291 D~Vi~dpP~~~ 301 (396)
T 2as0_A 291 DIVVLDPPAFV 301 (396)
T ss_dssp EEEEECCCCSC
T ss_pred CEEEECCCCCC
Confidence 99999999754
No 53
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.81 E-value=0.0023 Score=69.01 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=33.1
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
.|..+++|||+++.|.|||...+- |.+.=+|+|++-
T Consensus 171 ~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~g 206 (368)
T 1oqy_A 171 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 689999999999999999999997 999999999753
No 54
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00091 Score=51.68 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=32.7
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
...+.++++|||+++.+.+|+...| |.+.-+|+|+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence 3468999999999999999999997 89999999986
No 55
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.76 E-value=0.0022 Score=60.58 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||++||.|++.+.+.+.|. ..|+++|+++.+....+.+.. ...++.+|+.++. +.+|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999998875 348999999999887776432 2235567877653 4799
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+..+|-..+.
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999988865543
No 56
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.74 E-value=0.0017 Score=50.78 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=34.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
..++++.|+.|||+++.|.+|+..+|-+ ++.-++||++.
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 5678999999999999999999999975 58888999863
No 57
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.72 E-value=0.0036 Score=66.40 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+|||.|++++.+.+.+ ..|+++|+++.+....+.+....+.....++.+|+.++.. .+....+.+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence 46789999999999999988763 4589999999998888876543322223345566654421 1211235799
Q ss_pred EEEecCCCCccc
Q 005421 643 FVICQNSVPQIP 654 (697)
Q Consensus 643 LVIGGpPCQ~FS 654 (697)
+|+.-||+-..+
T Consensus 282 ~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 282 LVVLDPPAFAKG 293 (382)
T ss_dssp EEEECCCCSCCS
T ss_pred EEEECCCCCCCC
Confidence 999999974433
No 58
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.68 E-value=0.0016 Score=55.41 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=35.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
.++++..|+.|||++++|..|+.+|+-+ ++.-++||+..+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~ 68 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS 68 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 5578999999999999999999999975 788899999765
No 59
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.66 E-value=0.0025 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
.+.+..|+.|||+++.+.+|+..|+-+ ++.=++||+.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence 467999999999999999999999764 6777888874
No 60
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.64 E-value=0.0041 Score=61.73 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||.||.|++.+.+.+.+-. .|+++|+++.+....+.+....+... ..++.+|+.++... + ..+.|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence 4678999999999999999888742 58899999999888877665433222 23556788765421 1 12689
Q ss_pred cEEEecCCCCcc
Q 005421 642 DFVICQNSVPQI 653 (697)
Q Consensus 642 DLVIGGpPCQ~F 653 (697)
|+|+.-||+-..
T Consensus 121 D~Ii~npPy~~~ 132 (259)
T 3lpm_A 121 DIVTCNPPYFAT 132 (259)
T ss_dssp EEEEECCCC---
T ss_pred cEEEECCCCCCC
Confidence 999999998766
No 61
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.59 E-value=0.005 Score=59.19 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCCCCcccccCCC-CChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 561 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 561 fp~~itvLSLFSG-iGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+.+|||+.|| .|.+.+.+.+. +. .|+++|+++.+....+.+....+. ...++.+|+..+.. + ..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~ 121 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE 121 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence 3457899999999 99999998887 54 478999999998888776554322 23345677653321 1 12
Q ss_pred CCccEEEecCCCCccc
Q 005421 639 GSIDFVICQNSVPQIP 654 (697)
Q Consensus 639 g~~DLVIGGpPCQ~FS 654 (697)
+.||+|+.-||+-...
T Consensus 122 ~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKP 137 (230)
T ss_dssp SCEEEEEECCCCC---
T ss_pred CceeEEEECCCCcCCc
Confidence 5799999999986654
No 62
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.58 E-value=0.0029 Score=66.91 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc------
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------ 637 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~------ 637 (697)
+-+|||||||+|++++.+.+.+ ..|++||+++.+.+..+.+....+-....++.+|+.++.. .+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence 4579999999999999887744 3589999999999888877654322222345667654421 11110
Q ss_pred ------cCCccEEEecCCCCcc
Q 005421 638 ------LGSIDFVICQNSVPQI 653 (697)
Q Consensus 638 ------~g~~DLVIGGpPCQ~F 653 (697)
.+.||+|+--||+.+.
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g~ 308 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSGL 308 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTCC
T ss_pred cccccccCCCCEEEECcCcccc
Confidence 0379999999998754
No 63
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.50 E-value=0.0052 Score=56.62 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||+.||.|++.+.+.+.|. ..|+++|+++.+....+.+....+.. ...++.+|+.+... .+....+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence 356899999999999998777774 35889999999988887765443211 12244566654321 111113679
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998877
No 64
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=50.23 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
..+++..|+.|||+++.+.+|+..+| + ++.-++||+..
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence 34689999999999999999999997 2 78899999853
No 65
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.49 E-value=0.0043 Score=71.58 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+-+|||||||.|++++.+-+.|. ..|++||+++.+....+.+....+.. ...++.+|+.+.- . ...+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence 467899999999999999988886 34899999999998888776543222 1223456664421 1 12257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
||+|+--|||-.
T Consensus 610 fD~Ii~DPP~f~ 621 (703)
T 3v97_A 610 FDLIFIDPPTFS 621 (703)
T ss_dssp EEEEEECCCSBC
T ss_pred ccEEEECCcccc
Confidence 999999999843
No 66
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=96.45 E-value=0.0036 Score=76.93 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=40.4
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-chhhccccccc
Q 005421 368 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH 417 (697)
Q Consensus 368 ~~ppfF~feNV~~~~~----~~w~~Is~fL----~~i~Pe~Vds~~f-saa~R~Rgy~h 417 (697)
.+|.||++|||..+-. ..+..|.+.| |.+...++||..| .||+|.|.|+=
T Consensus 971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A 971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence 5799999999999854 2455665554 6788999999999 99999999963
No 67
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.0035 Score=51.37 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=35.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+++..|+.|||+++.+.+|+..++.+ ++.-++||+..+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 3468999999999999999999999874 799999999875
No 68
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.44 E-value=0.0039 Score=51.44 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=34.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
.+..|+.|||+++.+.+|+..+|..+ ++.-++||+..+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~ 49 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCC
Confidence 68999999999999999999998654 799999999875
No 69
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.43 E-value=0.0043 Score=58.71 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=59.6
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+..+.+.+.+|||+.||.|.+...+.+.|. ..|+++|+++.+....+.+....+.....+..+|+.+..
T Consensus 54 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------- 122 (205)
T 3grz_A 54 IERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------- 122 (205)
T ss_dssp HHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---------
T ss_pred HHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---------
Confidence 333344578999999999999999999875 357899999998887777654333222334556664431
Q ss_pred ccCCccEEEecCCCCc
Q 005421 637 KLGSIDFVICQNSVPQ 652 (697)
Q Consensus 637 ~~g~~DLVIGGpPCQ~ 652 (697)
.+.+|+|+..+|.+.
T Consensus 123 -~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 123 -DGKFDLIVANILAEI 137 (205)
T ss_dssp -CSCEEEEEEESCHHH
T ss_pred -CCCceEEEECCcHHH
Confidence 257999999887764
No 70
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.43 E-value=0.0065 Score=62.93 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=61.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.||.+..+....-.-..|+++|+++...+.++.+....+.....++.+|+.++.. ..+.||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 189 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD 189 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence 467899999999999988876421112478999999988888776554332223345677766532 125799
Q ss_pred EEEecCCCCccccC
Q 005421 643 FVICQNSVPQIPNS 656 (697)
Q Consensus 643 LVIGGpPCQ~FS~a 656 (697)
+|+--+||.+....
T Consensus 190 ~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 190 KILLDAPCTGSGTI 203 (315)
T ss_dssp EEEEECCTTSTTTC
T ss_pred EEEEeCCCCCcccc
Confidence 99999999887653
No 71
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.43 E-value=0.0042 Score=51.23 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhh
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 179 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~ 179 (697)
.+.+..|+.|||+++.|.+|+..|+-+ ++.-++||++.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~ 49 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 467999999999999999999999874 7888999998753
No 72
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.40 E-value=0.0049 Score=56.83 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||++||.|++.+.+.+.|. ..|+++|+++.+....+.+....+... ..++.+|+.+.. . ...+.+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~---~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI----D---CLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----H---HBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH----H---hhcCCC
Confidence 456899999999999998888874 358899999999888887654332111 123445554321 1 112569
Q ss_pred cEEEecCCC
Q 005421 642 DFVICQNSV 650 (697)
Q Consensus 642 DLVIGGpPC 650 (697)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999988774
No 73
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.39 E-value=0.012 Score=61.31 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.++||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++.. ..+.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~ 273 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV 273 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence 45789999999999988777644 11 2368999999999888887665432222355677776542 12458
Q ss_pred cEEEecCCCC
Q 005421 642 DFVICQNSVP 651 (697)
Q Consensus 642 DLVIGGpPCQ 651 (697)
|+|+.-|||-
T Consensus 274 D~Ii~npPyg 283 (354)
T 3tma_A 274 DRILANPPHG 283 (354)
T ss_dssp SEEEECCCSC
T ss_pred CEEEECCCCc
Confidence 9999999973
No 74
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.31 E-value=0.005 Score=48.90 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
+.+++..|+.||| +++.+.+|+..+|-+ ++.-+++|+..+
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 7789999999999 999999999999985 788899998765
No 75
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.28 E-value=0.0068 Score=65.92 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=57.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
..+-+|||||||.|.+++.|.+.+. .|+++|+++.+....+.+....+.. ..++.+|+.++..+ .+
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f 354 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF 354 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence 3567899999999999999988774 4789999999988887765433322 33566777665321 69
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+--||..+
T Consensus 355 D~Vv~dPPr~g 365 (425)
T 2jjq_A 355 DTVIVDPPRAG 365 (425)
T ss_dssp SEEEECCCTTC
T ss_pred CEEEEcCCccc
Confidence 99999888643
No 76
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.25 E-value=0.0039 Score=58.34 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
..+.+|||+.||.|.+.+.+.+.+-. ..++++|+++.+....+.+....+. ...++.+|+.+ .+.......+.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence 45789999999999999999888532 2578999999987777654432211 12234456554 111111123789
Q ss_pred cEEEecCCCCccc
Q 005421 642 DFVICQNSVPQIP 654 (697)
Q Consensus 642 DLVIGGpPCQ~FS 654 (697)
|+|+..||+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986543
No 77
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.23 E-value=0.0086 Score=62.48 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=59.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++.... ..++.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f 175 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV 175 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence 4678999999999999887653 211 248999999999888888765443222334567777664321 113579
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|+|+--+||.++...
T Consensus 176 D~Vl~D~PcSg~G~~ 190 (309)
T 2b9e_A 176 HYILLDPSCSGSGMP 190 (309)
T ss_dssp EEEEECCCCCC----
T ss_pred CEEEEcCCcCCCCCC
Confidence 999999999988754
No 78
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.22 E-value=0.011 Score=62.77 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||++||.|++.+.+.+.|.. ..|+++|+|+.+.+..+.+....+.. ...+..+|+.++.. ..+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~ 286 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS 286 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence 45678999999999999998888751 14789999999988888776543221 12245677766542 1257
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
+|+|+.-||.
T Consensus 287 fD~Ii~npPy 296 (373)
T 3tm4_A 287 VDFAISNLPY 296 (373)
T ss_dssp EEEEEEECCC
T ss_pred cCEEEECCCC
Confidence 9999998885
No 79
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.21 E-value=0.0082 Score=60.13 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=57.1
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|.+.+.+... +. .|+++|+++.+....+.+....+.....+..+|+.+.. ..+.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~ 176 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQ 176 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCC
Confidence 4568999999999999888754 33 47899999999888887654432222234556664321 1257
Q ss_pred ccEEEecCCCCccc
Q 005421 641 IDFVICQNSVPQIP 654 (697)
Q Consensus 641 ~DLVIGGpPCQ~FS 654 (697)
||+|+.-|||.+..
T Consensus 177 fD~Iv~npPy~~~~ 190 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQ 190 (276)
T ss_dssp EEEEEECCCCBCTT
T ss_pred ccEEEECCCCCCcc
Confidence 99999999998754
No 80
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.006 Score=51.74 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=35.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+.+..|+.|||+++.+.+|+..+|..+ ++.=++||+..+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence 34689999999999999999999999743 788899999875
No 81
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.20 E-value=0.008 Score=55.79 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=55.9
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
++...+.+-+|||+.||.|.+++.|.+.|. .|+++|+++.+....+......+.....++.+|+..+.. +
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~-- 85 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y-- 85 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence 344556678999999999999999988865 378999999998887776554322112233345443321 1
Q ss_pred ccCCccEEEecCC
Q 005421 637 KLGSIDFVICQNS 649 (697)
Q Consensus 637 ~~g~~DLVIGGpP 649 (697)
..+.||+|+..++
T Consensus 86 ~~~~fD~v~~~~~ 98 (185)
T 3mti_A 86 VREPIRAAIFNLG 98 (185)
T ss_dssp CCSCEEEEEEEEC
T ss_pred ccCCcCEEEEeCC
Confidence 1257999987643
No 82
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.20 E-value=0.0042 Score=64.02 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=61.4
Q ss_pred hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc
Q 005421 540 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 617 (697)
Q Consensus 540 ~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l 617 (697)
.+|..|-++ .+...+..+. ...+-+|||+.||.|.++..|.+.|. .|+++|+|+......+......+.....
T Consensus 19 ~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~ 93 (299)
T 2h1r_A 19 FQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLE 93 (299)
T ss_dssp ----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred ccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence 556666432 2333333332 13457899999999999999988774 4789999999988887765432222233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421 618 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 618 i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F 653 (697)
++.+|+.++. ++.+|+|++-+|++..
T Consensus 94 ~~~~D~~~~~----------~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 94 VYEGDAIKTV----------FPKFDVCTANIPYKIS 119 (299)
T ss_dssp C----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred EEECchhhCC----------cccCCEEEEcCCcccc
Confidence 5567776653 2468999999998753
No 83
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.18 E-value=0.0059 Score=66.06 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhh-c
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K 637 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~-~ 637 (697)
.+.+|||||||.|++++-+-+. |. ..|++||+++.+.+.++.+-...+-.. ..++.+|+.++ .. .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~ 121 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE 121 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence 4678999999999998866553 43 458999999999999988765432111 22334554332 22 1
Q ss_pred -cCCccEEEecCCCCc
Q 005421 638 -LGSIDFVICQNSVPQ 652 (697)
Q Consensus 638 -~g~~DLVIGGpPCQ~ 652 (697)
.+.||+|+--|||..
T Consensus 122 ~~~~fD~V~lDP~g~~ 137 (392)
T 3axs_A 122 WGFGFDYVDLDPFGTP 137 (392)
T ss_dssp CSSCEEEEEECCSSCC
T ss_pred hCCCCcEEEECCCcCH
Confidence 247999999988763
No 84
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.18 E-value=0.0059 Score=53.14 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+++..|+.|||+++.|.+|+..+|-+ ++.-++||++.+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~ 68 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG 68 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 3468999999999999999999999976 788899999875
No 85
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.16 E-value=0.0022 Score=52.87 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=36.7
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
|..-.++.++.|||+.+.+.||||..|. |++..+|.|++...
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D 59 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 3334689999999999999999999998 99999999998643
No 86
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.14 E-value=0.01 Score=58.26 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~-~ 638 (697)
.+.+||||.||.|++.+.+.+. +. .|+++|+++.+....+.+....+... ..++.+|+.+.-.+.+. .. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence 4678999999999988776654 43 47899999999888877654433222 23456676552111111 00 1
Q ss_pred CCccEEEecCCCCccc
Q 005421 639 GSIDFVICQNSVPQIP 654 (697)
Q Consensus 639 g~~DLVIGGpPCQ~FS 654 (697)
+.||+|+.-||+-...
T Consensus 139 ~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CCBSEEEECCCCC---
T ss_pred CcccEEEECCCCccCc
Confidence 4799999999987554
No 87
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.12 E-value=0.011 Score=60.41 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+||||.||.|.+.+.+.+. +. .|+++|+++.+....+.+....+... ..++.+|+.+.- . ..++.+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~ 193 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI 193 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence 468999999999999998877 43 47899999999988887655432222 234567776421 1 223444
Q ss_pred cEEEecCCCCcccc
Q 005421 642 DFVICQNSVPQIPN 655 (697)
Q Consensus 642 DLVIGGpPCQ~FS~ 655 (697)
|+|+.-|||-+...
T Consensus 194 D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 194 EMILSNPPYVKSSA 207 (284)
T ss_dssp CEEEECCCCBCGGG
T ss_pred CEEEEcCCCCCccc
Confidence 99999999987664
No 88
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=96.09 E-value=0.01 Score=58.46 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc--------CCCCCccccccccccChhhHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~--------n~~g~li~~~DI~~Lt~~~I~~l 634 (697)
.+.+|||++||.|++.+.+.+.+-. ..|++||+++.+....+.+.... +.....++.+|+.+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence 4678999999999999999887632 24789999998877766554321 11222345677765211111
Q ss_pred hhccCCccEEEecCCCCcc
Q 005421 635 IHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPCQ~F 653 (697)
..+.+|.|+--.|...+
T Consensus 125 --~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp --CTTCEEEEEEESCCCC-
T ss_pred --cccccCEEEEECCCccc
Confidence 12578888877766433
No 89
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.07 E-value=0.0074 Score=44.38 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 174 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I 174 (697)
..+.+..|+.|||+++.+.+|+..|+-+ ++.=+++|
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence 4568999999999999999999999764 56666665
No 90
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.05 E-value=0.0074 Score=49.86 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
.+..|+.||||++.+.+|+..+|..+ ++.=++||++.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence 47899999999999999999999844 788999999875
No 91
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.02 E-value=0.0074 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=34.2
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
.+..+++|||+++.+.+|++..+- |.+.=+|+|++.+
T Consensus 12 ~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~ 48 (63)
T 1wji_A 12 ALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence 689999999999999999999986 8999999999864
No 92
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.01 E-value=0.0087 Score=64.49 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
..+.+..|+.|||+++.|.+|+..++.+ .+.=++||++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn--~~~A~e~L~~ 205 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 6789999999999999999999999985 4677788863
No 93
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.97 E-value=0.0068 Score=45.78 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=32.0
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.+..+++|||+++.+.+|++..+. |.+.=+++|+.
T Consensus 7 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~ 41 (43)
T 2g3q_A 7 AVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence 588999999999999999999965 99999999985
No 94
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.97 E-value=0.0075 Score=51.03 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=35.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..++++.|+.|||+++.|.+|+..||.+ ++.=++||+..+
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGD--IEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 4568999999999999999999999963 788899999764
No 95
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=95.94 E-value=0.013 Score=58.80 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=58.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~---~n~~g-~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+||||.||.|.+.+.+.+.+-. ..|++||+++.+....+.+... .+... ..++.+|+.++....+.... ..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence 3568999999999999988776422 3578999999998888876543 21111 23456788776332211100 12
Q ss_pred CCccEEEecCCCCcc
Q 005421 639 GSIDFVICQNSVPQI 653 (697)
Q Consensus 639 g~~DLVIGGpPCQ~F 653 (697)
+.||+|+.-||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998765
No 96
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=95.94 E-value=0.026 Score=53.31 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+++.+.+.|=. ..|+++|+++......+.+....+.....++.+|+.+.-. ..+.+|
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 110 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD 110 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence 4678999999999999999888721 3478999999998888776544332222244566643221 225799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+.+.+..
T Consensus 111 ~i~~~~~~~ 119 (204)
T 3e05_A 111 RVFIGGSGG 119 (204)
T ss_dssp EEEESCCTT
T ss_pred EEEECCCCc
Confidence 999877654
No 97
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.91 E-value=0.0089 Score=65.89 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||+||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++. .. ..+.|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F 176 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF 176 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence 4678999999999999887654 211 147899999999888887655443222223345554332 11 12579
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|+|+--+||.+....
T Consensus 177 D~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMF 191 (456)
T ss_dssp EEEEEECCCCCGGGT
T ss_pred CEEEECCCCCCcccc
Confidence 999999999988754
No 98
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0069 Score=51.38 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=36.0
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
..+.+|+.|||+++.+.||+...|..|++.=+|+|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 368999999999999999999999889999999999864
No 99
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.81 E-value=0.0075 Score=49.77 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 140 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 140 ~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
.+..|+.|||+++.+.+|+..+|..+ ++.=++||+..+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~~ 59 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhCC
Confidence 68999999999999999999999733 788899998764
No 100
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.76 E-value=0.0061 Score=47.66 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=32.6
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.+..+++|||+++.|.+|++..+- |.+.-+|+|++
T Consensus 11 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~ 45 (49)
T 1ify_A 11 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 579999999999999999999986 89999999987
No 101
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.73 E-value=0.016 Score=64.14 Aligned_cols=86 Identities=16% Similarity=-0.016 Sum_probs=60.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||||+||.||.++.+-.+--.--.|+++|+++...+.++.+....+.. ..+..+|..++. .. ..+.||
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD 172 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH 172 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence 4678999999999999888754111114789999999998888766544333 334455655432 11 125799
Q ss_pred EEEecCCCCccccC
Q 005421 643 FVICQNSVPQIPNS 656 (697)
Q Consensus 643 LVIGGpPCQ~FS~a 656 (697)
+|+--+||.+....
T Consensus 173 ~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 173 RVLLDAPCSGEGMF 186 (464)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEECCCcCCcccc
Confidence 99999999987754
No 102
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=95.69 E-value=0.017 Score=63.91 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||+||.||.++.+... +-. -.|+++|+++...+.++.+....+.....++.+|..++.. . ..+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence 4678999999999999887764 211 2478999999998888876554332222344566665421 0 12579
Q ss_pred cEEEecCCCCccccC
Q 005421 642 DFVICQNSVPQIPNS 656 (697)
Q Consensus 642 DLVIGGpPCQ~FS~a 656 (697)
|+|+--+||.+....
T Consensus 189 D~Il~D~PcSg~G~~ 203 (479)
T 2frx_A 189 DAILLDAPCSGEGVV 203 (479)
T ss_dssp EEEEEECCCCCGGGG
T ss_pred CEEEECCCcCCcccc
Confidence 999999999987653
No 103
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.68 E-value=0.021 Score=54.21 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=55.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+||||-||.|.+...+.+.|. .++++|+++......+......+ ....++.+|+.++.. ..+.+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~ 104 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF 104 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence 3467999999999999999999986 47899999998887776654332 233355677776531 12479
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+..++
T Consensus 105 D~v~~~~~ 112 (227)
T 1ve3_A 105 DYVIFIDS 112 (227)
T ss_dssp EEEEEESC
T ss_pred EEEEEcCc
Confidence 99987766
No 104
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=95.67 E-value=0.011 Score=63.34 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc---------------CCCCCcccccccccc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL 626 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~---------------n~~g~li~~~DI~~L 626 (697)
.+.+|||||||.|++++.+-+. |- ..|+++|+++.+.+..+.+.... +.....++.+|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 3678999999999999887765 52 23899999999999988876533 111111233444322
Q ss_pred ChhhHHHhhhc-cCCccEEEecCCCCc
Q 005421 627 TTKKFESLIHK-LGSIDFVICQNSVPQ 652 (697)
Q Consensus 627 t~~~I~~l~~~-~g~~DLVIGGpPCQ~ 652 (697)
... .+.||+|+--|||..
T Consensus 125 --------~~~~~~~fD~I~lDP~~~~ 143 (378)
T 2dul_A 125 --------MAERHRYFHFIDLDPFGSP 143 (378)
T ss_dssp --------HHHSTTCEEEEEECCSSCC
T ss_pred --------HHhccCCCCEEEeCCCCCH
Confidence 211 247999999999873
No 105
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=95.67 E-value=0.012 Score=60.19 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+|||+-||.|.++..|.+.|. .|+++|+|+.....++......+. ....++.+|+.++. +..+
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f 94 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF 94 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence 457899999999999999998885 378999999988888775432211 11234567776653 2368
Q ss_pred cEEEecCCCCcc
Q 005421 642 DFVICQNSVPQI 653 (697)
Q Consensus 642 DLVIGGpPCQ~F 653 (697)
|+|++..|++-.
T Consensus 95 D~vv~nlpy~~~ 106 (285)
T 1zq9_A 95 DTCVANLPYQIS 106 (285)
T ss_dssp SEEEEECCGGGH
T ss_pred cEEEEecCcccc
Confidence 999999998753
No 106
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.67 E-value=0.013 Score=46.45 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=33.5
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
+.+++..|+.||| +++.+.+|+..+|-+ ++.-+++|++
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~ 50 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG 50 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 6678999999999 999999999999975 6888888875
No 107
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.66 E-value=0.015 Score=63.36 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~--n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+-+||||+||.|+.++.|.+.|. .|++||+|+.+....+.+.... +.....++.+|+.+.-.. +. .+.|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence 67899999999999999998885 4789999999999988876543 221223556777654111 11 1379
Q ss_pred cEEEecCCCC
Q 005421 642 DFVICQNSVP 651 (697)
Q Consensus 642 DLVIGGpPCQ 651 (697)
|+|+--||=.
T Consensus 165 DvV~lDPPrr 174 (410)
T 3ll7_A 165 DYIYVDPARR 174 (410)
T ss_dssp SEEEECCEEC
T ss_pred eEEEECCCCc
Confidence 9999888744
No 108
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=95.61 E-value=0.032 Score=52.71 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.++..+.+.|. .|+++|+++......+.+....+.....+..+|+.+... ..+.+|
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 145 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPFD 145 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCcc
Confidence 467899999999999999988874 478999999988888776654332223345667765432 125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+....+..+
T Consensus 146 ~i~~~~~~~~~ 156 (210)
T 3lbf_A 146 AIIVTAAPPEI 156 (210)
T ss_dssp EEEESSBCSSC
T ss_pred EEEEccchhhh
Confidence 99987655443
No 109
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.61 E-value=0.02 Score=61.98 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||+||.|.+++.|.+.+. .|+++|+++.+....+.+....+.....++.+|+.+.-.. + ....+.+|
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~---~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-Q---PWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-S---GGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-h---hhhcCCCC
Confidence 456899999999999999988864 4789999999988887766443222233566777663211 0 00124799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+--||..+.
T Consensus 359 ~Vv~dPPr~g~ 369 (433)
T 1uwv_A 359 KVLLDPARAGA 369 (433)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccH
Confidence 99999998764
No 110
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.55 E-value=0.028 Score=51.43 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|.+...+.+.|. .++++|+++.+....+......+... ..+..+|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 457899999999999999888864 47899999998888777654332222 2344566654321 257
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+..+|-.
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999876643
No 111
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.54 E-value=0.01 Score=51.52 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=36.5
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
...+..++.|||+++.+.||+...|..|++.=+|+|+...
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3478999999999999999999999889999999999864
No 112
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=95.50 E-value=0.013 Score=60.93 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCc----eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIK----LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~----~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||++||.|++.+.+.+..-. -..++++|+++.+..+.+.+....+. ...+..+|.-... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence 4689999999999999887654321 13579999999998888775443322 2224455543211 12
Q ss_pred CCccEEEecCCCCc
Q 005421 639 GSIDFVICQNSVPQ 652 (697)
Q Consensus 639 g~~DLVIGGpPCQ~ 652 (697)
+.+|+|++-||..-
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999743
No 113
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=95.48 E-value=0.033 Score=60.55 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.||.+..+...--.-..|+++|+++.....++.+....+.....++.+|+.++... + .-+.||
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD 332 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD 332 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence 4578999999999999888764111024789999999888887765543322233455677665421 1 114699
Q ss_pred EEEecCCCCccccC
Q 005421 643 FVICQNSVPQIPNS 656 (697)
Q Consensus 643 LVIGGpPCQ~FS~a 656 (697)
+|+--+||.++...
T Consensus 333 ~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 333 KVLLDAPCTSSGTI 346 (450)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEcCCCCCCeee
Confidence 99999999988764
No 114
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.45 E-value=0.0097 Score=49.10 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=34.4
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
.+..++.|||+++.+.+|+...|..|++.=+|+|+..
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 5899999999999999999999987999999999964
No 115
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.44 E-value=0.011 Score=50.26 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=34.5
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
..+..+++|||+++.|.+|++..+- |.+.-+|+||+.+
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence 3689999999999999999999986 9999999999743
No 116
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.43 E-value=0.026 Score=60.42 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||||.||.|.+.+.+.+.|. .|++||+++.+....+.+....+ ....++.+|+.+.... .+.||
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~-~~v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANA-LKAQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTT-CCCEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcC-CCeEEEEcchhhcccc--------CCCeE
Confidence 467899999999999999999986 36899999999888887765432 2233556777665321 25799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+.-+|..
T Consensus 301 ~Ii~npp~~ 309 (381)
T 3dmg_A 301 IIVTNPPFH 309 (381)
T ss_dssp EEEECCCCC
T ss_pred EEEECCchh
Confidence 999888865
No 117
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.019 Score=49.76 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=34.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+.+..|+.|||+++.+.+|+..|+.+ ++.=++||+..+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~n--ve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMS--VPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 4468999999999999999999999643 788899999875
No 118
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=95.41 E-value=0.022 Score=53.29 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=58.2
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc
Q 005421 558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
..+.+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+....+..... .....+..+|+.++.. .
T Consensus 37 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------~ 104 (215)
T 2pxx_A 37 EPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------P 104 (215)
T ss_dssp GGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------C
T ss_pred HHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------C
Confidence 333456789999999999999999999873 578999999998887765432 1223345677776531 1
Q ss_pred cCCccEEEecCCCC
Q 005421 638 LGSIDFVICQNSVP 651 (697)
Q Consensus 638 ~g~~DLVIGGpPCQ 651 (697)
.+.+|+|+...+..
T Consensus 105 ~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 105 SASFDVVLEKGTLD 118 (215)
T ss_dssp SSCEEEEEEESHHH
T ss_pred CCcccEEEECcchh
Confidence 25799999766543
No 119
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.31 E-value=0.03 Score=60.28 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~ 605 (697)
.+.++||+|||.|++.+-+...+.++ ..|+++|+|+.+....+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 45789999999999976555433221 13789999999998888
Q ss_pred HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421 606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC 650 (697)
.+....+... ..+..+|+.++.. .+.+|+|+.-||-
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence 7765443222 2355678876643 1479999988883
No 120
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=95.29 E-value=0.033 Score=55.44 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+...|.+.|.+ |+++|+++.+....+......+. ...+..+|+.++.. .+.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence 4678999999999999999999974 68999999988877776543322 22345677766542 25799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 999766443
No 121
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.29 E-value=0.017 Score=54.08 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhcc
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+.+|||+.||.|++...+.+. |-. ..|+++|+++.+....+.+....+. ....++.+|+.++.. . ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence 345679999999999999888765 211 2478999999988888776554321 122245667655432 1 12
Q ss_pred CCccEEEecCCC
Q 005421 639 GSIDFVICQNSV 650 (697)
Q Consensus 639 g~~DLVIGGpPC 650 (697)
+.+|+|+..+|-
T Consensus 92 ~~fD~v~~~~~~ 103 (197)
T 3eey_A 92 CPVKAVMFNLGY 103 (197)
T ss_dssp SCEEEEEEEESB
T ss_pred CCceEEEEcCCc
Confidence 579999988766
No 122
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=95.26 E-value=0.032 Score=50.64 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+...+.+.+. .++++|+++.+....+......+.....++.+|+.+ .+. .+.+|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D 102 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN 102 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence 456899999999999999988443 478999999988888776544322222234556543 111 15799
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+..+|
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998887
No 123
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=95.23 E-value=0.047 Score=52.37 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=61.0
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCcccccccc
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ 624 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf----~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~ 624 (697)
+..|......+.+|||+-||.|.+...+.+.+- +-..|+++|+++......+.+....+ .....+..+|+.
T Consensus 71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150 (227)
T ss_dssp HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence 333433334567999999999999988887652 11247899999998887776654332 122234566776
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421 625 ALTTKKFESLIHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 625 ~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F 653 (697)
+...+... ..+.||+|+...++..+
T Consensus 151 ~~~~~~~~----~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 151 QVNEEEKK----ELGLFDAIHVGASASEL 175 (227)
T ss_dssp GCCHHHHH----HHCCEEEEEECSBBSSC
T ss_pred hcccccCc----cCCCcCEEEECCchHHH
Confidence 54311101 12579999988877643
No 124
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.20 E-value=0.025 Score=49.06 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+.+..|+.|||+++.+.+|+...|..+ ++.=++||++.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~ 69 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM 69 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCC
Confidence 45689999999999999999999998654 788899999875
No 125
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.19 E-value=0.033 Score=60.00 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=61.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.||.+..+...+-. ..|+++|+++...+.++.+....+. ...+..+|..++... + ..+.||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence 3568999999999999998876532 3578999999988888776554322 223456677665311 1 125799
Q ss_pred EEEecCCCCccccC
Q 005421 643 FVICQNSVPQIPNS 656 (697)
Q Consensus 643 LVIGGpPCQ~FS~a 656 (697)
+|+.-+||.++...
T Consensus 318 ~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 318 RILLDAPCSATGVI 331 (429)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEeCCCCccccc
Confidence 99999999988654
No 126
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.18 E-value=0.023 Score=60.88 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~ 605 (697)
.+.++||+|||.|++.+.+-..|-++ ..|+++|+|+.+....+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 46789999999999887665543211 24789999999998888
Q ss_pred HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421 606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 649 (697)
Q Consensus 606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP 649 (697)
.+....+... ..+..+|+.++.. .+.+|+|+.=||
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP 310 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP 310 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence 7655433211 2245567766542 146999998888
No 127
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.16 E-value=0.017 Score=59.38 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=57.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+ +|||+-||.|.++..|.+.|. .|+++|+|+.....++..... ....++.+|+.+++-..+ ..+|
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~ 112 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS 112 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence 35 899999999999999999984 478999999999888775432 123366789988764322 2578
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+|-.|=+
T Consensus 113 ~iv~NlPy~ 121 (271)
T 3fut_A 113 LLVANLPYH 121 (271)
T ss_dssp EEEEEECSS
T ss_pred EEEecCccc
Confidence 999988743
No 128
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.14 E-value=0.022 Score=56.77 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|.+.+.+.+.|. .|+++|+++.+....+.+....+.. ..+..+|+.+. + ..+.+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f 185 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF 185 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence 4567899999999999999999996 4789999999988887765433211 22334454331 1 12579
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+...+
T Consensus 186 D~Vv~n~~ 193 (254)
T 2nxc_A 186 DLLVANLY 193 (254)
T ss_dssp EEEEEECC
T ss_pred CEEEECCc
Confidence 99997554
No 129
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=95.13 E-value=0.049 Score=50.38 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+|||+-||.|.+...+.+.|.+ ++++|+++.+....+......+.....+...|+.++.. .+.+|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~ 100 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF 100 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence 458999999999999999988863 68999999988877776544322223345667766531 257899
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+....
T Consensus 101 v~~~~~ 106 (199)
T 2xvm_A 101 ILSTVV 106 (199)
T ss_dssp EEEESC
T ss_pred EEEcch
Confidence 886543
No 130
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.07 E-value=0.019 Score=58.35 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=62.5
Q ss_pred Hhhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC
Q 005421 539 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 616 (697)
Q Consensus 539 k~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~ 616 (697)
|.+|-.|-+| .+..++..+. ...+-+|||+-||.|.++..|.+.|- .|++||+|+.....++..+.. ....
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v 77 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI 77 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence 3446666442 2333333332 12357899999999999999998883 478999999999888876542 1223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCC
Q 005421 617 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 649 (697)
Q Consensus 617 li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpP 649 (697)
.++.+|+.++.-..+. ..+.+| |||-+|
T Consensus 78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 3667899888643321 013567 777766
No 131
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.06 E-value=0.017 Score=50.27 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.0
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
.+..++.|||+++.|.+|++..+. |++.=+|+|+..+.
T Consensus 32 ~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~ 69 (83)
T 1veg_A 32 SINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 589999999999999999999996 79999999999765
No 132
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=95.06 E-value=0.024 Score=58.96 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred hhhhhhccc--cchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc
Q 005421 540 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 617 (697)
Q Consensus 540 ~Lgnsfqvd--ti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l 617 (697)
.+|-.|-+| .+...+..+.. ..+-+|||+-||.|.++..|.+.|- .|++||+|+.....++..... .....
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~ 99 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE 99 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence 346655332 33444444321 2456899999999999999988874 478999999998888876542 12233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEecCCCC
Q 005421 618 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 618 i~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
++.+|+.++.-.. ..+|+|++-.|-+
T Consensus 100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 100 IIWGDALKVDLNK--------LDFNKVVANLPYQ 125 (295)
T ss_dssp EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred EEECchhhCCccc--------CCccEEEEeCccc
Confidence 6678998775321 2589999888743
No 133
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.04 E-value=0.042 Score=52.61 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=59.6
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccC
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT 627 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt 627 (697)
+..|......+.+|||+-||.|+++..+.+. |-. ..|+++|+++......+......+ .....+..+|+....
T Consensus 68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 3344433455789999999999999888765 422 247899999998877776554321 111223456665332
Q ss_pred hhhHHHhhhccCCccEEEecCCCCcc
Q 005421 628 TKKFESLIHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 628 ~~~I~~l~~~~g~~DLVIGGpPCQ~F 653 (697)
. ..+.||+|+...||..+
T Consensus 147 ~--------~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 147 A--------EEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp G--------GGCCEEEEEECSBBSSC
T ss_pred c--------cCCCcCEEEECCchHHH
Confidence 1 12579999999998764
No 134
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=94.99 E-value=0.015 Score=54.24 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=50.1
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||+.||.|.+...+.+.| .|+++|+++.+.+. . ....+..+|+.+.-. .+.||+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~---------~~~fD~ 81 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSIN---------QESVDV 81 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBC---------GGGCSE
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhcc---------cCCCCE
Confidence 4589999999999999999988 47899999997644 1 122355678765221 147999
Q ss_pred EEecCCCCccc
Q 005421 644 VICQNSVPQIP 654 (697)
Q Consensus 644 VIGGpPCQ~FS 654 (697)
|+..+|-...+
T Consensus 82 i~~n~~~~~~~ 92 (170)
T 3q87_B 82 VVFNPPYVPDT 92 (170)
T ss_dssp EEECCCCBTTC
T ss_pred EEECCCCccCC
Confidence 99987755433
No 135
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.92 E-value=0.081 Score=62.50 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=72.2
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCC
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVM 132 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~~~~ 132 (697)
.+++.++.||||+....||+...|..+++.-.+.|++.-. |.++++.-... ..+..........
T Consensus 654 ~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~--~~~~~~s~~~~~~-- 717 (854)
T 3ihp_A 654 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILP--GSSGPGSTSAAAD-- 717 (854)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC-----------------
T ss_pred HHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------ccccccccccc--ccccccccccccC--
Confidence 3789999999999999999999999999999999986432 01111111100 0000000000000
Q ss_pred chhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 133 DEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 133 s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
. ...+.+..|..|||+.+.+.+|+++.+.+ ++.-+|+|++..
T Consensus 718 ~--~~~e~i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~ 759 (854)
T 3ihp_A 718 P--PPEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 759 (854)
T ss_dssp ---CCHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCc
Confidence 1 14467899999999999999999999875 688899999764
No 136
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.92 E-value=0.023 Score=45.66 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=34.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
..+-++.|+.|||+++.|.+|+++-|... ++.-+|+|.-
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k 47 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISK 47 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 55678999999999999999999999976 8999999873
No 137
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=94.91 E-value=0.042 Score=59.07 Aligned_cols=79 Identities=10% Similarity=0.104 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~-------------------------------------k~VvaVEid~~ar~t~~ 605 (697)
.+-+++|.|||.|++.+-+...+.++ ..++++|+|+.+.+..+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 45779999999999876555433221 13789999999999888
Q ss_pred HHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421 606 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 606 ~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC 650 (697)
.+....+-.. ..+..+|+.++... +.+|+|+.-||-
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY 310 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY 310 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence 8765543222 23456787776531 479999988884
No 138
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=94.90 E-value=0.027 Score=54.05 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=55.6
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 633 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~ 633 (697)
+..+..+.+.+.+|||+-||.|.+...+.+.|.+ |+++|+++.+....+... ......++.+|+.++..
T Consensus 44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~----- 112 (242)
T 3l8d_A 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF----- 112 (242)
T ss_dssp HHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS-----
T ss_pred HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC-----
Confidence 3444555567789999999999999999999874 689999999877765421 11223345677776541
Q ss_pred hhhccCCccEEEec
Q 005421 634 LIHKLGSIDFVICQ 647 (697)
Q Consensus 634 l~~~~g~~DLVIGG 647 (697)
..+.+|+|+..
T Consensus 113 ---~~~~fD~v~~~ 123 (242)
T 3l8d_A 113 ---ENEQFEAIMAI 123 (242)
T ss_dssp ---CTTCEEEEEEE
T ss_pred ---CCCCccEEEEc
Confidence 12468888854
No 139
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.87 E-value=0.043 Score=50.22 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=55.2
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+.+|||+-||.|.+...+.+.|.+ ++++|+++.+....+.... ...++..|+.++.. ..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence 456789999999999999999999863 6889999998877765431 22345677766531 1257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
+|+|+..+++-.
T Consensus 108 ~D~i~~~~~~~~ 119 (195)
T 3cgg_A 108 FDLIVSAGNVMG 119 (195)
T ss_dssp EEEEEECCCCGG
T ss_pred eeEEEECCcHHh
Confidence 999997655543
No 140
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=94.86 E-value=0.016 Score=64.75 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=53.8
Q ss_pred hhHHhcCCCCCcccCCCChHHHHHhhhhhhccccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEee
Q 005421 516 IELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIE 595 (697)
Q Consensus 516 ~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVE 595 (697)
+..|||-|- |......+-.+|+..+...+. .+ ......+++|||+=||.|-++..|.++|.. |.+||
T Consensus 29 y~~i~~~~~-~~~~~~r~~~~r~~~i~~~~~--~~-------~~~~~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD 95 (569)
T 4azs_A 29 YQTIFGHPE-WDGDAARDCNQRLDLITEQYD--NL-------SRALGRPLNVLDLGCAQGFFSLSLASKGAT---IVGID 95 (569)
T ss_dssp CBCCTTCGG-GTTTCSBCCHHHHHHHHHHHH--HH-------HHHHTSCCEEEEETCTTSHHHHHHHHTTCE---EEEEE
T ss_pred HhhhcCChh-hccccccchHHHHHHHHHHHH--HH-------HhhcCCCCeEEEECCCCcHHHHHHHhCCCE---EEEEC
Confidence 344566553 322223345577765543331 11 111235689999999999999999999974 68999
Q ss_pred CCHHHHHHHHHHHh
Q 005421 596 TSETNRRILKRWWE 609 (697)
Q Consensus 596 id~~ar~t~~~~~~ 609 (697)
+++.+..+-+.+-.
T Consensus 96 ~~~~~i~~a~~~a~ 109 (569)
T 4azs_A 96 FQQENINVCRALAE 109 (569)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888776543
No 141
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=94.84 E-value=0.0098 Score=62.62 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=58.2
Q ss_pred Hhhhhhhccccchhhh-ccccccCCCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCC
Q 005421 539 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE 616 (697)
Q Consensus 539 k~Lgnsfqvdti~~hL-svLK~~fp~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~ 616 (697)
+.+|..|..+.++..+ ..+.. +.+.+|||+.||.|++.+.+.+. +- ...++++|+++.+.... ...
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~-~~~i~gvDi~~~~~~~a---------~~~ 83 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGT-AYRFVGVEIDPKALDLP---------PWA 83 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCS-CSEEEEEESCTTTCCCC---------TTE
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCC-CCeEEEEECCHHHHHhC---------CCC
Confidence 4456656554444432 22222 23559999999999999988753 11 13578999999874322 112
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421 617 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 655 (697)
Q Consensus 617 li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~ 655 (697)
.++.+|+.+... .+.+|+|++-||......
T Consensus 84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence 245677765432 257999999999976654
No 142
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.83 E-value=0.02 Score=42.02 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=29.9
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 88 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LL 88 (697)
.+..+++|||+++.+.+|++..+. |.+.=+++|+
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 578999999999999999999965 8888888774
No 143
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.77 E-value=0.032 Score=48.58 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=34.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
..+++..|+.|||+++.|.+|+..++-+ ++.=++||++..
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~ 60 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence 4678999999999999999999766654 788899999764
No 144
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=94.76 E-value=0.042 Score=52.07 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=56.7
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-----CCccccccccccChhhH
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKF 631 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-----g~li~~~DI~~Lt~~~I 631 (697)
++.+.+.+.+|||+-||.|.+...+.+.|.. |+++|+++.+....+......+.. ...+...|+.++..
T Consensus 24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--- 97 (235)
T 3sm3_A 24 IHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--- 97 (235)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS---
T ss_pred HHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC---
Confidence 4445567889999999999999999999864 689999999888777654322110 01234566655431
Q ss_pred HHhhhccCCccEEEecCCC
Q 005421 632 ESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 632 ~~l~~~~g~~DLVIGGpPC 650 (697)
..+.+|+|+.....
T Consensus 98 -----~~~~~D~v~~~~~l 111 (235)
T 3sm3_A 98 -----HDSSFDFAVMQAFL 111 (235)
T ss_dssp -----CTTCEEEEEEESCG
T ss_pred -----CCCceeEEEEcchh
Confidence 12579999975433
No 145
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=94.75 E-value=0.069 Score=51.38 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||.||.|.+++.+.+.|. .|+++|+++.+....+.+....+.. ...++.+|+.+.- ...+.+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence 457899999999999999888865 3789999999988887765443322 2224556765421 122579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+-+.
T Consensus 124 D~v~~~~ 130 (204)
T 3njr_A 124 EAVFIGG 130 (204)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9988554
No 146
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=94.74 E-value=0.049 Score=54.25 Aligned_cols=76 Identities=16% Similarity=0.007 Sum_probs=53.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+.||.|.++..+.+.|. .|+++|+|+.....++..... .....++.+|+.++.-.. ...+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~- 96 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY- 96 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence 467899999999999999998883 478999999998888775432 122335678887764210 1234
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
.|++.+|=+
T Consensus 97 ~vv~nlPy~ 105 (244)
T 1qam_A 97 KIFGNIPYN 105 (244)
T ss_dssp EEEEECCGG
T ss_pred EEEEeCCcc
Confidence 577777643
No 147
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=94.73 E-value=0.032 Score=44.23 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=33.3
Q ss_pred hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
.+..+++||| +++.+.+|++..|. |++.-+|+|+..
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~ 50 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGG-DINAAIERLLGS 50 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHc
Confidence 4789999999 99999999999997 999999999974
No 148
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=94.71 E-value=0.049 Score=52.05 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+ ..+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence 3568999999999999988776311 2478999999998877766544332223355678776431 01 125799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999887753
No 149
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.70 E-value=0.02 Score=48.38 Aligned_cols=37 Identities=11% Similarity=0.360 Sum_probs=33.9
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
.+..++.|||+++.+.+|++..|. |++.=+|+|+..+
T Consensus 32 ~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~ 68 (73)
T 1wiv_A 32 SVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 589999999999999999999986 9999999999743
No 150
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.63 E-value=0.023 Score=44.94 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.4
Q ss_pred hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.+..+++||| +++.+.+|++..|. |.+.-+|+|+.
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~ 50 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGG-DINAAIERLLG 50 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 5899999999 99999999999987 89999999985
No 151
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.60 E-value=0.047 Score=43.82 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=33.1
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
-|.++++|||+++-|.+|++.-.. |++.--.+|+.+..
T Consensus 12 ~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 499999999999999999998876 89988888887643
No 152
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=94.59 E-value=0.075 Score=50.20 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=51.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+.+||||-||.|.+...|.+.|.. |+++|+++......+... +..+..+|+.++.. .+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~ 102 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA 102 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence 345679999999999999999999864 688999999877776543 12245567766651 257
Q ss_pred ccEEEecC
Q 005421 641 IDFVICQN 648 (697)
Q Consensus 641 ~DLVIGGp 648 (697)
||+|+...
T Consensus 103 fD~v~~~~ 110 (211)
T 3e23_A 103 YDAVWAHA 110 (211)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 89888643
No 153
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=94.55 E-value=0.064 Score=56.64 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=58.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~-Lt~~~I~~l~~~~g~~D 642 (697)
+.+||||+ |.|.+++.+.+.|.. ..|+++|+++.+....+.+....+.....++.+|+.+ +... ..+.||
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD 243 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD 243 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence 57899999 999999999888752 3578999999998888876554332223356678876 4311 114799
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
+|+-.+||..
T Consensus 244 ~Vi~~~p~~~ 253 (373)
T 2qm3_A 244 TFITDPPETL 253 (373)
T ss_dssp EEEECCCSSH
T ss_pred EEEECCCCch
Confidence 9999999853
No 154
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=94.54 E-value=0.052 Score=50.83 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+ +|||+-||.|.+...|.+.|.+ ++++|+++.+....+......+. ...+...|+.++.. ..+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence 345 9999999999999999999873 68899999988777765543321 22244567765531 12468
Q ss_pred cEEEec
Q 005421 642 DFVICQ 647 (697)
Q Consensus 642 DLVIGG 647 (697)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 999863
No 155
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=94.51 E-value=0.073 Score=51.92 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|+++..+.+. |=. ..++++|+++......+.+....+... ..+..+|+.+.- ..+.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 162 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN 162 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence 4678999999999999999887 311 347899999988887777654433222 234556765331 1246
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+-.+|+.
T Consensus 163 ~D~v~~~~~~~ 173 (255)
T 3mb5_A 163 VDHVILDLPQP 173 (255)
T ss_dssp EEEEEECSSCG
T ss_pred cCEEEECCCCH
Confidence 99999887765
No 156
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=94.51 E-value=0.064 Score=55.87 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+|||++||.||.++.+-+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+ ..+.||+
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D~ 101 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVDG 101 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEEE
T ss_pred CCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCCE
Confidence 468999999999999988765201 247899999999888877554322 222345677765531 11110 1247999
Q ss_pred EEecCCCCc
Q 005421 644 VICQNSVPQ 652 (697)
Q Consensus 644 VIGGpPCQ~ 652 (697)
|+--+||..
T Consensus 102 Vl~D~gvSs 110 (301)
T 1m6y_A 102 ILMDLGVST 110 (301)
T ss_dssp EEEECSCCH
T ss_pred EEEcCccch
Confidence 999888864
No 157
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=94.43 E-value=0.08 Score=48.27 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+....+.+....+. ....+..+|+.+ .....+.+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~ 101 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI 101 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence 45789999999999999998888 3578999999988887776543322 111223444432 11122579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+...+...
T Consensus 102 D~v~~~~~~~~ 112 (192)
T 1l3i_A 102 DIAVVGGSGGE 112 (192)
T ss_dssp EEEEESCCTTC
T ss_pred CEEEECCchHH
Confidence 99998876543
No 158
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=94.41 E-value=0.083 Score=50.62 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.++..+...|. .|+++|+++......+......+ ...+..+|+.+.-. ..+.+|
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD 136 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD 136 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence 456899999999999999998883 47899999998888776554221 22244566654211 125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+...++..+
T Consensus 137 ~v~~~~~~~~~ 147 (231)
T 1vbf_A 137 RVVVWATAPTL 147 (231)
T ss_dssp EEEESSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99988776654
No 159
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.38 E-value=0.051 Score=52.14 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhh--c
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH--K 637 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~--~ 637 (697)
++.+.+||||-||.||++..+.+.+- .|++||+++.. ..++..++.+||++... +.+..... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34578999999999999999887753 47899999852 12234466789988653 22322221 0
Q ss_pred cCCccEEEecCCCC
Q 005421 638 LGSIDFVICQNSVP 651 (697)
Q Consensus 638 ~g~~DLVIGGpPCQ 651 (697)
.+.||+|+.-.|++
T Consensus 89 ~~~~D~Vlsd~~~~ 102 (191)
T 3dou_A 89 IEKVDDVVSDAMAK 102 (191)
T ss_dssp CSSEEEEEECCCCC
T ss_pred CCcceEEecCCCcC
Confidence 14899999876654
No 160
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.37 E-value=0.057 Score=46.78 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=34.5
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
-..+.+++.|||+++.+.+|+...+ .|++.=+|+|+...
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCC
Confidence 3368999999999999999999984 59999999999864
No 161
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=94.30 E-value=0.036 Score=54.38 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=55.2
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh
Q 005421 556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 635 (697)
Q Consensus 556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~ 635 (697)
.+....+.+.+||||-||.|.+...|.+.|.+ |+++|+++......+.... ...++.+|+.++..
T Consensus 43 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------- 107 (263)
T 3pfg_A 43 LVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL------- 107 (263)
T ss_dssp HHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-------
T ss_pred HHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-------
Confidence 34444566789999999999999999999863 6899999998877765321 23355678776542
Q ss_pred hccCCccEEEecC
Q 005421 636 HKLGSIDFVICQN 648 (697)
Q Consensus 636 ~~~g~~DLVIGGp 648 (697)
.+.+|+|+...
T Consensus 108 --~~~fD~v~~~~ 118 (263)
T 3pfg_A 108 --GRRFSAVTCMF 118 (263)
T ss_dssp --SCCEEEEEECT
T ss_pred --cCCcCEEEEcC
Confidence 25789888543
No 162
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=94.28 E-value=0.074 Score=50.76 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+......+. ...+..+|+.++.. . +.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~-~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------N-RKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------S-CCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--------c-CCc
Confidence 35679999999999999999998863 78899999988777765543221 22345677766531 1 579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9998643
No 163
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=94.20 E-value=0.093 Score=51.65 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=57.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+-||.|.+...+.+.+. ..|+++|+++......+......+... ..++.+|+.++.. ..+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 114 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNEE 114 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCCC
Confidence 4578999999999999999988854 247899999998887776654332222 3345678876641 1257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
||+|+...+...
T Consensus 115 fD~i~~~~~~~~ 126 (267)
T 3kkz_A 115 LDLIWSEGAIYN 126 (267)
T ss_dssp EEEEEESSCGGG
T ss_pred EEEEEEcCCcee
Confidence 999997665543
No 164
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=94.19 E-value=0.24 Score=53.57 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccCh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT 628 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG------------f~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~ 628 (697)
.+.+|+|..||.||+.+.+.+.- +....++++|+++.+.++.+.+..-++.. ...+..+|.-....
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 35789999999999988776420 01134789999999888776643322221 12345566543321
Q ss_pred hhHHHhhhccCCccEEEecCCCCcccc
Q 005421 629 KKFESLIHKLGSIDFVICQNSVPQIPN 655 (697)
Q Consensus 629 ~~I~~l~~~~g~~DLVIGGpPCQ~FS~ 655 (697)
.+.||+|++-||......
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~~ 268 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRPA 268 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCCT
T ss_pred ---------cCCcCEEEECCCCCCccc
Confidence 247999999999876543
No 165
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.17 E-value=0.031 Score=48.71 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=33.6
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
...+.+|+.|||+++.+.+|+ ..+..|.+.=+|+|+...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL-~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEAL-KSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-HHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHH-HHcCCCHHHHHHHHHHCc
Confidence 347899999999999999999 566679999999999743
No 166
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.15 E-value=0.097 Score=50.73 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||||.||.|.+...|.+.|.. |+++|+++......+......+. ...++.+|+.++.. .+.+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---------~~~fD 107 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---------KNEFD 107 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC---------CSCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc---------CCCcc
Confidence 4578999999999999999999874 68999999988877765543321 22345667766532 13578
Q ss_pred EEEe
Q 005421 643 FVIC 646 (697)
Q Consensus 643 LVIG 646 (697)
+|+.
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 167
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.14 E-value=0.014 Score=45.46 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
.+.|..|+.|||++..|.+|+..||-+ .+.=+++|++
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 457899999999999999999999954 5666778764
No 168
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=94.09 E-value=0.056 Score=55.23 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=33.8
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+|||+|||.|..++-|-..|.. |++||+++....+++...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l 130 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGL 130 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHH
Confidence 78999999999999988888863 789999998666555443
No 169
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.03 E-value=0.067 Score=57.01 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=53.0
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g---~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+||||+||.|.+++.+.+.+-. ..|++||+++.+....+.+....+-.. ..+..+|+.+.- ..+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~ 292 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR 292 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence 378999999999999999888411 247899999999888877655332110 112445554311 1257
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
||+|+..||..
T Consensus 293 fD~Ii~nppfh 303 (375)
T 4dcm_A 293 FNAVLCNPPFH 303 (375)
T ss_dssp EEEEEECCCC-
T ss_pred eeEEEECCCcc
Confidence 99999998864
No 170
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=94.01 E-value=0.064 Score=52.14 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||||-||.|.+...+.+.|.. .|+++|+++......+.... .....++.+|+.++.. ..+.+|
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence 4688999999999999999999863 57899999998877765432 1222345677766541 125789
Q ss_pred EEEecC
Q 005421 643 FVICQN 648 (697)
Q Consensus 643 LVIGGp 648 (697)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 888654
No 171
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=93.97 E-value=0.14 Score=49.47 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=57.2
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
...+.+.+||||-||.|.+...|.+.|. .|+++|+++.+....+.... .....++.+|+.++....- + ...
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~ 122 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE 122 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence 3345678899999999999999999886 37899999998877766431 2223355678877643211 0 001
Q ss_pred CCccEEEecCCCCc
Q 005421 639 GSIDFVICQNSVPQ 652 (697)
Q Consensus 639 g~~DLVIGGpPCQ~ 652 (697)
..+|+|+...-..-
T Consensus 123 ~~~d~v~~~~~~~~ 136 (245)
T 3ggd_A 123 IGDANIYMRTGFHH 136 (245)
T ss_dssp HCSCEEEEESSSTT
T ss_pred cCccEEEEcchhhc
Confidence 24899987654443
No 172
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=93.94 E-value=0.061 Score=63.48 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=51.9
Q ss_pred cCCCCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHH--HHHHhh----cCCCCCccccccccccChhhH
Q 005421 560 MFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES----SGQTGELVQIEDIQALTTKKF 631 (697)
Q Consensus 560 ~fp~~itvLSLFSGiGGlslGL~~a-G-f~~k~VvaVEid~~ar~t~--~~~~~~----~n~~g~li~~~DI~~Lt~~~I 631 (697)
..+.+.+|+|.+||.|++-+.+.+. + ..-..++++||++.+.... +.+... ++.....+..+|......
T Consensus 318 ~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~--- 394 (878)
T 3s1s_A 318 PLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP--- 394 (878)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG---
T ss_pred cCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc---
Confidence 3456789999999999999887653 2 2123578999999988776 332111 000011222334333211
Q ss_pred HHhhhccCCccEEEecCCCC
Q 005421 632 ESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 632 ~~l~~~~g~~DLVIGGpPCQ 651 (697)
...+.||+|||=||=-
T Consensus 395 ----~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 395 ----EDFANVSVVVMNPPYV 410 (878)
T ss_dssp ----GGGTTEEEEEECCBCC
T ss_pred ----cccCCCCEEEECCCcc
Confidence 1236899999999973
No 173
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.92 E-value=0.066 Score=42.79 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=33.9
Q ss_pred hHHHHHHHHhcCCChHH-HHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eee-v~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
+.+++..|+.|||+.+. +.+|+.+++-+ ++.-+++|+...
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~ 49 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS 49 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 56789999999997765 69999999976 688899999764
No 174
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=93.92 E-value=0.062 Score=54.49 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc-------CCCCCccccccccc
Q 005421 553 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIEDIQA 625 (697)
Q Consensus 553 hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~-------n~~g~li~~~DI~~ 625 (697)
.+..++...+.+.+||||-||.|++...+.+.+. ..++++|+++......+...... +.....++.+|+.+
T Consensus 24 ~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 101 (313)
T 3bgv_A 24 FLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK 101 (313)
T ss_dssp HHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred HHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc
Confidence 3444444445678999999999999998887653 35789999999877776654322 11112245677766
Q ss_pred cChhhHHHhhhccCCccEEEecC
Q 005421 626 LTTKKFESLIHKLGSIDFVICQN 648 (697)
Q Consensus 626 Lt~~~I~~l~~~~g~~DLVIGGp 648 (697)
+.... .+....+.+|+|+...
T Consensus 102 ~~~~~--~~~~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 102 ELLID--KFRDPQMCFDICSCQF 122 (313)
T ss_dssp SCSTT--TCSSTTCCEEEEEEET
T ss_pred cchhh--hcccCCCCEEEEEEec
Confidence 53100 0000124688888644
No 175
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.90 E-value=0.092 Score=40.60 Aligned_cols=38 Identities=21% Similarity=0.124 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
+.+++..|+.|||+ ++.+..|+..++-+ ++.-+++|++
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~ 45 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN 45 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence 67789999999996 56689999999976 6777888874
No 176
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.89 E-value=0.078 Score=43.07 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
+.+++..|+.|||+ ++.+.+|+..++-+ ++.-+++|++.
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 77899999999996 77889999999976 68889998864
No 177
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=93.88 E-value=0.1 Score=53.50 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|++...+.+.+-+-..|+++|+++......+......+.....+..+|+.+... ..+.+|
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 146 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD 146 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence 467899999999999988887764212378999999988877776544322223345567665322 125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+...++..+
T Consensus 147 ~Iv~~~~~~~~ 157 (317)
T 1dl5_A 147 VIFVTVGVDEV 157 (317)
T ss_dssp EEEECSBBSCC
T ss_pred EEEEcCCHHHH
Confidence 99988887654
No 178
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=93.87 E-value=0.11 Score=58.11 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChhHHHHHHc----CC-------------ceeeEEEeeCCHHHHHHHHHHHhhcCCCC-----Ccccc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNRRILKRWWESSGQTG-----ELVQI 620 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a----Gf-------------~~k~VvaVEid~~ar~t~~~~~~~~n~~g-----~li~~ 620 (697)
.+.+|+|..||.|||-+.+.+. +- ....++++|+++.+.++.+.+..-++... ..+..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 3689999999999998776532 10 11258999999999887776433222221 22344
Q ss_pred ccccccChhhHHHhhhccCCccEEEecCCCCcccc
Q 005421 621 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 655 (697)
Q Consensus 621 ~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~FS~ 655 (697)
+|.-... ....+.||+|++-||......
T Consensus 249 gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~~ 276 (541)
T 2ar0_A 249 GNTLGSD-------GENLPKAHIVATNPPFGSAAG 276 (541)
T ss_dssp SCTTSHH-------HHTSCCEEEEEECCCCTTCSS
T ss_pred CCCcccc-------cccccCCeEEEECCCcccccc
Confidence 4432111 012368999999999876543
No 179
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=93.87 E-value=0.16 Score=49.15 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=56.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+-||.|.+...+.+.+-. .|+++|+++......+......+... ..++.+|+.++.. ..+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence 34568999999999999999888742 57899999998887776654433222 2345678766641 1257
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
||+|+......
T Consensus 115 fD~v~~~~~l~ 125 (257)
T 3f4k_A 115 LDLIWSEGAIY 125 (257)
T ss_dssp EEEEEEESCSC
T ss_pred EEEEEecChHh
Confidence 99998765443
No 180
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=93.79 E-value=0.082 Score=49.60 Aligned_cols=79 Identities=20% Similarity=0.090 Sum_probs=52.3
Q ss_pred hhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhH
Q 005421 552 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 631 (697)
Q Consensus 552 ~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I 631 (697)
..+..+... +.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+. .+.....+..+|+.++.
T Consensus 36 ~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~---- 103 (218)
T 3ou2_A 36 AALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT---- 103 (218)
T ss_dssp HHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC----
T ss_pred HHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC----
Confidence 334444432 34559999999999999999998864 6889999998766654 11122334567776551
Q ss_pred HHhhhccCCccEEEec
Q 005421 632 ESLIHKLGSIDFVICQ 647 (697)
Q Consensus 632 ~~l~~~~g~~DLVIGG 647 (697)
..+.+|+|+..
T Consensus 104 -----~~~~~D~v~~~ 114 (218)
T 3ou2_A 104 -----PDRQWDAVFFA 114 (218)
T ss_dssp -----CSSCEEEEEEE
T ss_pred -----CCCceeEEEEe
Confidence 12568888754
No 181
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=93.72 E-value=0.096 Score=49.52 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=54.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+......+.....+..+|+.++.. ..+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence 3467899999999999999988762212478999999988877776544332223345677766531 12569
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 108 D~v~~~~ 114 (219)
T 3dh0_A 108 DFIFMAF 114 (219)
T ss_dssp EEEEEES
T ss_pred eEEEeeh
Confidence 9998653
No 182
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=93.70 E-value=0.11 Score=49.59 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||+-||.|+.++.+.++ |. .|+++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 3578999999999999998876 54 47899999998888888776543322 22445666532 22222121
Q ss_pred -CCccEEEecCCCCc
Q 005421 639 -GSIDFVICQNSVPQ 652 (697)
Q Consensus 639 -g~~DLVIGGpPCQ~ 652 (697)
+.||+|+-..+|..
T Consensus 131 ~~~fD~v~~d~~~~~ 145 (223)
T 3duw_A 131 YEPFDFIFIDADKQN 145 (223)
T ss_dssp CCCCSEEEECSCGGG
T ss_pred CCCcCEEEEcCCcHH
Confidence 57999998877765
No 183
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=93.65 E-value=0.12 Score=51.58 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|.+++.+.+. |-. ..|+++|+++.+....+.+....+. ....+..+|+.+.- ..+.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 181 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD 181 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence 4568999999999999988876 421 2478999999998888776543321 11123445665431 1146
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+-.+|+.
T Consensus 182 ~D~V~~~~~~~ 192 (277)
T 1o54_A 182 VDALFLDVPDP 192 (277)
T ss_dssp EEEEEECCSCG
T ss_pred cCEEEECCcCH
Confidence 99999988876
No 184
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=93.65 E-value=0.11 Score=48.80 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=50.2
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+|||+.||.|.+.+.+... +. .++++|+++.+....+.+....+.....+..+|+.++.. .+.+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 133 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF 133 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence 568999999999999888875 43 478999999988887776544322223345567765431 2479
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+.
T Consensus 134 D~i~~ 138 (207)
T 1jsx_A 134 DGVIS 138 (207)
T ss_dssp EEEEC
T ss_pred CEEEE
Confidence 99984
No 185
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=93.55 E-value=0.057 Score=52.99 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=35.2
Q ss_pred CCCcccccCCCCChhHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG-f~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+|||++||.|.+.+.+.+.- ..-..|+++|+++.+....+.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence 45789999999999998887650 11235789999999887776543
No 186
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=93.51 E-value=0.1 Score=51.77 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
-+.+.+|||+-||.|.+...|.+.|.+ |+++|+++......+......+. ....++.+|+.++.. + ..+
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~ 135 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET 135 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence 345689999999999999999999874 68899999988877765543221 112245667766542 0 125
Q ss_pred CccEEEecCC
Q 005421 640 SIDFVICQNS 649 (697)
Q Consensus 640 ~~DLVIGGpP 649 (697)
.||+|+....
T Consensus 136 ~fD~v~~~~~ 145 (285)
T 4htf_A 136 PVDLILFHAV 145 (285)
T ss_dssp CEEEEEEESC
T ss_pred CceEEEECch
Confidence 7999996543
No 187
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=93.46 E-value=0.15 Score=51.01 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhc-CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~-n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
..+.+|||+.||.|+++..+.+. +. .|+++|+++......+.+.... +.....+..+|+.+.- .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~ 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence 34678999999999999998876 44 4789999999888777765432 2112224456665421 1
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+.-.|
T Consensus 177 ~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 177 DQMYDAVIADIP 188 (275)
T ss_dssp SCCEEEEEECCS
T ss_pred CCCccEEEEcCc
Confidence 146999998655
No 188
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=93.44 E-value=0.081 Score=50.94 Aligned_cols=73 Identities=16% Similarity=0.028 Sum_probs=50.9
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
.+|||+-||.|.+...|.+.|.. |+++|+++.+....+......+.. ...+..+|+.++... +.||+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 48999999999999999887753 789999999888777654321110 122456777665421 36899
Q ss_pred EEecCC
Q 005421 644 VICQNS 649 (697)
Q Consensus 644 VIGGpP 649 (697)
|+....
T Consensus 136 v~~~~~ 141 (235)
T 3lcc_A 136 IFDYVF 141 (235)
T ss_dssp EEEESS
T ss_pred EEEChh
Confidence 886543
No 189
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=93.44 E-value=0.17 Score=48.76 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+.||.|.+...+.+.+. .++++|+++......+.+....+. ....+..+|+.+... ..+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 159 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF 159 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence 457899999999999998888754 478999999988877776543321 112234566654320 11479
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+-.+|
T Consensus 160 D~v~~~~~ 167 (248)
T 2yvl_A 160 HAAFVDVR 167 (248)
T ss_dssp SEEEECSS
T ss_pred cEEEECCc
Confidence 99998666
No 190
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.40 E-value=0.083 Score=44.99 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF~-eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
+.+++..|+.|||. ++.+.+|+..++-+ ++.-+++|+..+
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~ 69 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS 69 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 67789999999994 78889999999866 688899999754
No 191
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.39 E-value=0.097 Score=53.59 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=37.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
.+-+|||+|||.|...+++.++|.+ +++||+++.+..+.+.....
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence 3557999999999999999999963 68999999988877765543
No 192
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.36 E-value=0.13 Score=41.12 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 139 EKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
+.+..|++|||+.++|.+|+...+.+
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn 38 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNN 38 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 57999999999999999999999887
No 193
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.29 E-value=0.09 Score=42.02 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=31.1
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
-|.++++|||+++-|.+|++.-.. |++.--.+||.+
T Consensus 14 ~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 14 KIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 489999999999999999998876 888777777765
No 194
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=93.23 E-value=0.19 Score=48.77 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~-n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+.||.|.++..+.++ |-. ..|+++|+++......+.+.... +.....+..+|+.+.. + ..+.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~ 166 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA 166 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence 4678999999999999998887 311 24789999999888887765433 2122224556776542 1 1147
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+-.+|+.
T Consensus 167 ~D~v~~~~~~~ 177 (258)
T 2pwy_A 167 YDGVALDLMEP 177 (258)
T ss_dssp EEEEEEESSCG
T ss_pred cCEEEECCcCH
Confidence 99999877655
No 195
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=93.23 E-value=0.067 Score=54.35 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----------CCCCccccccccccChhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK 630 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----------~~g~li~~~DI~~Lt~~~ 630 (697)
+.+.+||+|.||.|++...+.+.|. ..|++||+|+......+.++ ..+ .+...++.+|..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~---- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF---- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence 3567899999999999998887753 46889999999998888876 321 11122344554321
Q ss_pred HHHhhhccCCccEEEecCCC
Q 005421 631 FESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 631 I~~l~~~~g~~DLVIGGpPC 650 (697)
+. . .+.+|+|+.-+|+
T Consensus 147 l~---~-~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 147 IK---N-NRGFDVIIADSTD 162 (281)
T ss_dssp HH---H-CCCEEEEEEECCC
T ss_pred hc---c-cCCeeEEEECCCC
Confidence 11 1 3579999988876
No 196
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=93.22 E-value=0.065 Score=54.34 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=49.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHHhhcCCCC-CccccccccccChhhHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL 634 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~-------~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l 634 (697)
.+.+|||++||.|.+++.|-+.|.+ |+++|+++ .+....+.+....+... ..++.+|+.++. ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence 3568999999999999999888853 78999999 66555443221110001 123445554321 111
Q ss_pred hhccCCccEEEecCCC
Q 005421 635 IHKLGSIDFVICQNSV 650 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPC 650 (697)
....+.||+|+--||=
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 1001479999976653
No 197
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=93.21 E-value=0.19 Score=49.36 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=55.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
++.+.+|||+-||.|.+...+.+.+-. ..|+++|+++......+......+.....+...|+.++.. ..+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence 356789999999999999999888311 2478999999888777766543322223345667766542 1257
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
+|+|+.....
T Consensus 106 fD~v~~~~~l 115 (276)
T 3mgg_A 106 FDHIFVCFVL 115 (276)
T ss_dssp EEEEEEESCG
T ss_pred eeEEEEechh
Confidence 9999976543
No 198
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=93.19 E-value=0.15 Score=51.77 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+.||.|++...+.+. |.+ |+++|+++......+......+.. ...++.+|+.++.- ..+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~ 184 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF--------DKG 184 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC--------CCC
Confidence 35678999999999999998877 753 789999999887777655433222 12345678776541 125
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.||+|+.
T Consensus 185 ~fD~V~~ 191 (312)
T 3vc1_A 185 AVTASWN 191 (312)
T ss_dssp CEEEEEE
T ss_pred CEeEEEE
Confidence 7898885
No 199
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=93.19 E-value=0.14 Score=49.66 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...+...|. .|+++|+++......+......+.....+..+|+.++.. ..+.||
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 89 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD 89 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcEE
Confidence 467899999999999999988874 478999999888777765543322223345677766531 125799
Q ss_pred EEEecCCC
Q 005421 643 FVICQNSV 650 (697)
Q Consensus 643 LVIGGpPC 650 (697)
+|+.....
T Consensus 90 ~v~~~~~l 97 (239)
T 1xxl_A 90 IITCRYAA 97 (239)
T ss_dssp EEEEESCG
T ss_pred EEEECCch
Confidence 99876443
No 200
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=93.19 E-value=0.13 Score=48.07 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... +...++.+|+.++.. .-+.+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence 678999999999999999999874 688999999877776532 223355677766531 1257999
Q ss_pred EEecC
Q 005421 644 VICQN 648 (697)
Q Consensus 644 VIGGp 648 (697)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 98643
No 201
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=93.18 E-value=0.15 Score=48.85 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=53.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc------------CCCCCccccccccccChh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK 629 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~------------n~~g~li~~~DI~~Lt~~ 629 (697)
+.+.+|||+=||.|....-|.+.|++ |++||+++.+....+...... ......++.+|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 45679999999999999999999974 789999999988776532110 012233567888887643
Q ss_pred hHHHhhhccCCccEEEe
Q 005421 630 KFESLIHKLGSIDFVIC 646 (697)
Q Consensus 630 ~I~~l~~~~g~~DLVIG 646 (697)
.. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899884
No 202
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=93.09 E-value=0.36 Score=46.55 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+||||-||.|.+.+.+.+. +. .+++||+++.+....+......+.....++.+|+.++. ..+ ..+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~ 108 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGE 108 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTS
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCC
Confidence 3567999999999999998876 43 47899999998877766544332222335567777542 111 1256
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|.|+-.+|+.
T Consensus 109 ~d~v~~~~~~p 119 (213)
T 2fca_A 109 VKRVYLNFSDP 119 (213)
T ss_dssp CCEEEEESCCC
T ss_pred cCEEEEECCCC
Confidence 89888766653
No 203
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=93.09 E-value=0.13 Score=49.22 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|.+...+.+. |. .++++|+++......+....... ...++.+|+.++... +
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~ 108 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E 108 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence 45689999999999999999888 54 47899999998877776543221 223456777766421 5
Q ss_pred CccEEEecCCCCc
Q 005421 640 SIDFVICQNSVPQ 652 (697)
Q Consensus 640 ~~DLVIGGpPCQ~ 652 (697)
.+|+|+......-
T Consensus 109 ~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 109 KYDMVVSALSIHH 121 (234)
T ss_dssp CEEEEEEESCGGG
T ss_pred CceEEEEeCcccc
Confidence 7999997754443
No 204
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=93.01 E-value=0.2 Score=45.47 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+...+.+.. +-..|+++|+++......+.+....+....+++.+|..+ .+. ...+.+|
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence 45789999999999999887762 113478999999988877766544322212233444422 111 1116799
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
+|+-+.+...
T Consensus 97 ~i~~~~~~~~ 106 (178)
T 3hm2_A 97 VIFIGGGLTA 106 (178)
T ss_dssp EEEECC-TTC
T ss_pred EEEECCcccH
Confidence 9997665543
No 205
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=93.01 E-value=0.57 Score=49.75 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=22.8
Q ss_pred hhhhhhhccCCCChHHHHHHHHHhCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEKGQD 78 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~Ge~ 78 (697)
.+++..|.+|||+++-|.++|..+-.-
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~i 73 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGA 73 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCccc
Confidence 447888999999999999999887654
No 206
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=92.97 E-value=0.17 Score=48.93 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+.+|||+-||.|.++..+.+.|. .|+++|+++......+... ........+..+|+.++.- ..+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence 34567999999999999999998885 3789999999887777643 1112223345677765531 1256
Q ss_pred ccEEEecCC
Q 005421 641 IDFVICQNS 649 (697)
Q Consensus 641 ~DLVIGGpP 649 (697)
||+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 999987543
No 207
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=92.93 E-value=0.047 Score=42.38 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=32.2
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.|..++.|||++..|.+|+...| .|.+.=++.|++
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFACE-KNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 58899999999999999999999 699999999975
No 208
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=92.86 E-value=0.097 Score=51.11 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+++.+..+.-. ..|++||+++.+....+......+.....++.+|+.++... ....+.||
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~fD 143 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESYD 143 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCcc
Confidence 4678999999999888887743211 24789999998888877765543322233455666554310 00125799
Q ss_pred EEEecC
Q 005421 643 FVICQN 648 (697)
Q Consensus 643 LVIGGp 648 (697)
+|+...
T Consensus 144 ~V~~~~ 149 (240)
T 1xdz_A 144 IVTARA 149 (240)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999644
No 209
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=92.85 E-value=0.15 Score=58.97 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChhHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR 601 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aG------f~-----------------------------------~k~VvaVEid~~ar 601 (697)
.+-++||+|||.|++.+.+-..+ +. -..++++|+|+.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45679999999999976554332 10 02478999999999
Q ss_pred HHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 005421 602 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 602 ~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIGGpPC 650 (697)
++-+.+....+-.. ..+..+|+.++.... ..+.+|+||.-||=
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 88887765443222 224567776654210 11379999998883
No 210
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=92.76 E-value=0.12 Score=49.26 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=52.6
Q ss_pred hhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHH
Q 005421 553 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 632 (697)
Q Consensus 553 hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~ 632 (697)
.+..+.... .+.+|||+=||.|.+...|.+.|.+ |+++|+++......+..+.. ...++.+|+.++..
T Consensus 33 ~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~---- 100 (250)
T 2p7i_A 33 MVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL---- 100 (250)
T ss_dssp HHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC----
T ss_pred HHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc----
Confidence 344444433 4568999999999999999888863 68899999988777764321 22245567665521
Q ss_pred HhhhccCCccEEEec
Q 005421 633 SLIHKLGSIDFVICQ 647 (697)
Q Consensus 633 ~l~~~~g~~DLVIGG 647 (697)
.+.||+|+..
T Consensus 101 -----~~~fD~v~~~ 110 (250)
T 2p7i_A 101 -----PRRYDNIVLT 110 (250)
T ss_dssp -----SSCEEEEEEE
T ss_pred -----CCcccEEEEh
Confidence 1457777754
No 211
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=92.75 E-value=0.26 Score=46.77 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-----CCccccccccccChhhHHHhhhc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-----g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
.+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+......+.. ...+..+|+..+.. .
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~ 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence 3568999999999999999987732 35789999999988887765422111 12244566643331 1
Q ss_pred cCCccEEEecC
Q 005421 638 LGSIDFVICQN 648 (697)
Q Consensus 638 ~g~~DLVIGGp 648 (697)
.+.+|+|+...
T Consensus 100 ~~~fD~v~~~~ 110 (217)
T 3jwh_A 100 FHGYDAATVIE 110 (217)
T ss_dssp GCSCSEEEEES
T ss_pred CCCcCEEeeHH
Confidence 25788888544
No 212
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=92.74 E-value=0.093 Score=49.65 Aligned_cols=71 Identities=11% Similarity=-0.020 Sum_probs=52.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...|.+.|. .|+++|+++.+....+...... ....++.+|+.++.. .+.+|
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence 357899999999999999998874 4789999999888777654321 122355678876651 25799
Q ss_pred EEEec
Q 005421 643 FVICQ 647 (697)
Q Consensus 643 LVIGG 647 (697)
+|+..
T Consensus 117 ~v~~~ 121 (216)
T 3ofk_A 117 LIVVA 121 (216)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99975
No 213
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=92.74 E-value=0.16 Score=51.01 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh-----------------cCCCCCccccccccc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA 625 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~-----------------~n~~g~li~~~DI~~ 625 (697)
.+.+|||+=||.|....-|.+.|+. |++||+++.+....+..... .......++.+|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4678999999999999999999984 78999999998776542210 001122345678877
Q ss_pred cChhhHHHhhhccCCccEEEe
Q 005421 626 LTTKKFESLIHKLGSIDFVIC 646 (697)
Q Consensus 626 Lt~~~I~~l~~~~g~~DLVIG 646 (697)
+... ..+.||+|+.
T Consensus 145 l~~~-------~~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRA-------NIGKFDRIWD 158 (252)
T ss_dssp GGGG-------CCCCEEEEEE
T ss_pred CCcc-------cCCCEEEEEE
Confidence 6532 1257999984
No 214
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=92.69 E-value=0.29 Score=49.37 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEi-d~~ar~t~~~~~ 608 (697)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+....+.+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999985 35889999 899888877765
No 215
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=92.61 E-value=0.17 Score=52.24 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+++-+||+|-||.|++...+.+.. ....|++||+|+...+..+.++...+ .+...++.+|..+.-..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 456789999999999998887762 23568899999999998888765321 12233556776543211
Q ss_pred ccCCccEEEecCCC
Q 005421 637 KLGSIDFVICQNSV 650 (697)
Q Consensus 637 ~~g~~DLVIGGpPC 650 (697)
..+.+|+||.-+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999986553
No 216
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=92.59 E-value=0.14 Score=52.32 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=54.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+||||-||.|.+++.|.+.|.+ |+++|+++......+..... . .+..|+.+++.+.... ..+.|
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~-----~-~v~~~~~~~~~~~~~~---~~~~f 111 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALAD-----R-CVTIDLLDITAEIPKE---LAGHF 111 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSS-----S-CCEEEECCTTSCCCGG---GTTCC
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHh-----c-cceeeeeecccccccc---cCCCc
Confidence 34678999999999999999999964 78999999998887764321 1 2345555554310000 12579
Q ss_pred cEEEecCCCCcc
Q 005421 642 DFVICQNSVPQI 653 (697)
Q Consensus 642 DLVIGGpPCQ~F 653 (697)
|+|+.....+.|
T Consensus 112 D~Vv~~~~l~~~ 123 (261)
T 3iv6_A 112 DFVLNDRLINRF 123 (261)
T ss_dssp SEEEEESCGGGS
T ss_pred cEEEEhhhhHhC
Confidence 999976654443
No 217
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=92.53 E-value=0.21 Score=48.68 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|..++.+.+++- -..|+++|+++......+.++...+.. ...++.+|+.+.-.. .+ .+.|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence 356899999999999999988432 235789999999988888877654332 223456777654220 11 2579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+-..++..
T Consensus 144 D~V~~~~~~~~ 154 (232)
T 3ntv_A 144 DMIFIDAAKAQ 154 (232)
T ss_dssp EEEEEETTSSS
T ss_pred cEEEEcCcHHH
Confidence 99997777665
No 218
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=92.52 E-value=0.088 Score=51.01 Aligned_cols=75 Identities=20% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...|.+.+. ..|+++|+++......+......+.....++..|+.++.. ..+.||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence 467999999999999998877763 3578999999988887765433211111234566655432 124699
Q ss_pred EEEec
Q 005421 643 FVICQ 647 (697)
Q Consensus 643 LVIGG 647 (697)
+|+..
T Consensus 149 ~v~~~ 153 (241)
T 2ex4_A 149 VIWIQ 153 (241)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99854
No 219
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=92.48 E-value=0.11 Score=40.25 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.7
Q ss_pred hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
-+..+++|||+ +..+.+|++..+. |++.-+|+|+.
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence 47899999996 6789999999985 99999999984
No 220
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=92.46 E-value=0.12 Score=53.02 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+.+.+||+|.||.|++...+.+. |. ..|++||+|+......+.++... +.+...++.+|+.+.-. .
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence 34578999999999999888776 43 45789999999988888776421 11222344566543211 1
Q ss_pred ccCCccEEEecCCCC
Q 005421 637 KLGSIDFVICQNSVP 651 (697)
Q Consensus 637 ~~g~~DLVIGGpPCQ 651 (697)
..+.+|+|+..+||.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999888764
No 221
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=92.46 E-value=0.25 Score=46.73 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...+.+.+-+-..|+++|+++......+......+.....+..+|+...-. ..+.+|
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD 148 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence 467899999999999988877652112478999999988777766543322222234456532111 125799
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+...++..+
T Consensus 149 ~v~~~~~~~~~ 159 (215)
T 2yxe_A 149 RIYTTAAGPKI 159 (215)
T ss_dssp EEEESSBBSSC
T ss_pred EEEECCchHHH
Confidence 99988776644
No 222
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=92.42 E-value=0.17 Score=50.89 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=51.0
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~---~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
-+||||-||.|.+...|.+.|.. |+++|+++......+......+. ....++.+|+.++.. .+.|
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f 151 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF 151 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence 48999999999999999999864 68999999988877765543210 122356678877642 2578
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+.
T Consensus 152 D~v~~ 156 (299)
T 3g2m_A 152 GTVVI 156 (299)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 97773
No 223
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=92.41 E-value=0.25 Score=49.63 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+.. ...+..+|+.++ .+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence 34678999999999999998877 84 3789999999888777765543322 122456777655 15
Q ss_pred CccEEEecC
Q 005421 640 SIDFVICQN 648 (697)
Q Consensus 640 ~~DLVIGGp 648 (697)
.+|+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 789988653
No 224
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.40 E-value=0.2 Score=40.24 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 139 EKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
..|..|++|||+.++|.+|+...+.+
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nn 36 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNN 36 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 46999999999999999999999887
No 225
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=92.38 E-value=0.16 Score=49.65 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+||||.||.|.+.+.+.+.+-. ..|++||+++.+....+.+-...+.....++.+|+.++-. ... ..+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----~~~-~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----KMI-PDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH----HHS-CTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HHc-CCCChh
Confidence 3568999999999999988876532 2478999999987776665443322223345566654311 111 236799
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+--+|+.
T Consensus 108 ~v~~~~~~p 116 (218)
T 3dxy_A 108 MVQLFFPDP 116 (218)
T ss_dssp EEEEESCCC
T ss_pred eEEEeCCCC
Confidence 998776654
No 226
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=92.37 E-value=0.27 Score=49.32 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=42.6
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421 558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 611 (697)
Q Consensus 558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~ 611 (697)
.++.+.+-+|+|+-||.|-+++.+.+.|-. ..|+++|+++.+....+.+-...
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~ 62 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH 62 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 344556789999999999999999998843 46899999999988887765443
No 227
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=92.35 E-value=0.15 Score=48.79 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
++.+.+|||+-||.|.+...+.+. . .++++|+++......+......+ ....+..+|+.++.. .+.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~ 96 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP 96 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence 344578999999999998888776 3 47899999998887776654322 222345667765531 146
Q ss_pred ccEEEec
Q 005421 641 IDFVICQ 647 (697)
Q Consensus 641 ~DLVIGG 647 (697)
+|+|+..
T Consensus 97 fD~v~~~ 103 (243)
T 3d2l_A 97 VDAITIL 103 (243)
T ss_dssp EEEEEEC
T ss_pred cCEEEEe
Confidence 8888853
No 228
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=92.34 E-value=0.16 Score=50.05 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+-||.|++...+.+.|. ..++++|+++......+......+.. ...++.+|+.++.-. ..+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~ 133 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGKE 133 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSSC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCCC
Confidence 4578999999999999999988885 24789999999888877765432211 122455677655310 1246
Q ss_pred ccEEEecC
Q 005421 641 IDFVICQN 648 (697)
Q Consensus 641 ~DLVIGGp 648 (697)
+|+|+...
T Consensus 134 fD~v~~~~ 141 (298)
T 1ri5_A 134 FDVISSQF 141 (298)
T ss_dssp EEEEEEES
T ss_pred cCEEEECc
Confidence 88888654
No 229
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.30 E-value=0.16 Score=43.20 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=32.1
Q ss_pred hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
-+..+++||| .++.|.+|++..+. |++.-+|+|+..
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~ 68 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 5789999999 58999999999885 999999999973
No 230
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=92.23 E-value=0.24 Score=48.40 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=59.4
Q ss_pred cccchhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccccc
Q 005421 547 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL 626 (697)
Q Consensus 547 vdti~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~L 626 (697)
...+..++..+.. ..+.+|||+-||.|.+...|.+.+. .|+++|+++......+......+.+...+..+|+.++
T Consensus 23 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l 97 (260)
T 1vl5_A 23 GSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM 97 (260)
T ss_dssp CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC
T ss_pred HHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC
Confidence 3444444444432 2467899999999999999988874 4789999998887777655433222233556787765
Q ss_pred ChhhHHHhhhccCCccEEEecCCC
Q 005421 627 TTKKFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 627 t~~~I~~l~~~~g~~DLVIGGpPC 650 (697)
.- .-+.||+|+.....
T Consensus 98 ~~--------~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 98 PF--------TDERFHIVTCRIAA 113 (260)
T ss_dssp CS--------CTTCEEEEEEESCG
T ss_pred CC--------CCCCEEEEEEhhhh
Confidence 41 11579999866443
No 231
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=92.22 E-value=0.28 Score=46.67 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 638 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~- 638 (697)
+.+|||+-||.|+.++.+.+. +. .|+++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 137 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ 137 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence 468999999999999998875 43 47899999998888888776543322 22345665432 11111111
Q ss_pred -CCccEEEecCCCC
Q 005421 639 -GSIDFVICQNSVP 651 (697)
Q Consensus 639 -g~~DLVIGGpPCQ 651 (697)
+.||+|+--++..
T Consensus 138 ~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 138 AWQYDLIYIDADKA 151 (225)
T ss_dssp TTCEEEEEECSCGG
T ss_pred CCCccEEEECCCHH
Confidence 6899999665543
No 232
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=92.19 E-value=0.38 Score=46.03 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+.||.|.++..+.+. |-. ..|+++|+++.+.+..+..-.. + ....++.+|+.+... +. ...+.+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~ 144 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE-R-RNIVPILGDATKPEE--YR---ALVPKV 144 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS-C-TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc-c-CCCEEEEccCCCcch--hh---cccCCc
Confidence 4678999999999999988755 421 2478999999776655543321 1 223345677765321 00 112479
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+...|
T Consensus 145 D~v~~~~~ 152 (227)
T 1g8a_A 145 DVIFEDVA 152 (227)
T ss_dssp EEEEECCC
T ss_pred eEEEECCC
Confidence 99997766
No 233
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=92.12 E-value=0.23 Score=47.91 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~-~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+-||.|.+...+.+.|. .|+++|+++......+.. .+...++.+|+. .+.. ...+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~-------~~~~~ 111 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA-------GLGAP 111 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT-------TCCCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC-------cCCCC
Confidence 4568899999999999999999886 378999999988777653 223335667874 3321 00257
Q ss_pred ccEEEecCC
Q 005421 641 IDFVICQNS 649 (697)
Q Consensus 641 ~DLVIGGpP 649 (697)
||+|+..+.
T Consensus 112 fD~v~~~~~ 120 (226)
T 3m33_A 112 FGLIVSRRG 120 (226)
T ss_dssp EEEEEEESC
T ss_pred EEEEEeCCC
Confidence 999997643
No 234
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=92.10 E-value=0.25 Score=52.23 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||.||.|.+++.+.++|. +.|++||++ ......+......+... ..++.+|+.++... +.+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 130 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV 130 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence 457899999999999999999996 358899999 55555555443322222 23556788776521 579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+..+
T Consensus 131 D~Iv~~~ 137 (376)
T 3r0q_C 131 DVIISEW 137 (376)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999744
No 235
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=92.09 E-value=0.32 Score=46.12 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.+|||+-||.|.+...+.+.|-. ..++++|+++.+....+....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 3568999999999999999987732 357899999999888877553
No 236
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.09 E-value=0.085 Score=42.52 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=34.5
Q ss_pred hhhhhccCCC-ChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
...+|.+||| ..++-.+|++.+|. |.+..++.||+...
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccC
Confidence 5789999999 99999999999988 99999999998653
No 237
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=92.08 E-value=0.16 Score=51.54 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+++-+||+|.||.|++...+.+. |. ..|.+||+|+...+..+.++... +.+...++.+|..+. +. .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence 45678999999999998888776 53 45889999999999888876431 112223455665431 11 1
Q ss_pred ccCCccEEEecCCC
Q 005421 637 KLGSIDFVICQNSV 650 (697)
Q Consensus 637 ~~g~~DLVIGGpPC 650 (697)
..+.+|+|+-.+|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999987764
No 238
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=92.02 E-value=0.29 Score=47.40 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+.||.|.+...+.+.+- ..|+++|+++......+......+.....+..+|+. .. +. ..+.+|
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD 160 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD 160 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence 456899999999999988877652 247899999998877776654332222223445551 11 11 124599
Q ss_pred EEEecCCCCcc
Q 005421 643 FVICQNSVPQI 653 (697)
Q Consensus 643 LVIGGpPCQ~F 653 (697)
+|+...++..+
T Consensus 161 ~Ii~~~~~~~~ 171 (235)
T 1jg1_A 161 VIIVTAGAPKI 171 (235)
T ss_dssp EEEECSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99987766544
No 239
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=92.02 E-value=0.16 Score=50.71 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++.... ...+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence 45678999999999888877765211 247899999999888887655443222234556665443210 012579
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 240
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=92.01 E-value=0.3 Score=46.16 Aligned_cols=72 Identities=22% Similarity=0.153 Sum_probs=53.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...+.+.|.. ++++|+++......+.... ....+..+|+.++... +.+|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 4678999999999999999998864 6889999998777765422 1233556788776421 5799
Q ss_pred EEEecCCC
Q 005421 643 FVICQNSV 650 (697)
Q Consensus 643 LVIGGpPC 650 (697)
+|+.....
T Consensus 109 ~v~~~~~l 116 (220)
T 3hnr_A 109 TIVSTYAF 116 (220)
T ss_dssp EEEEESCG
T ss_pred EEEECcch
Confidence 99876543
No 241
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=91.92 E-value=0.2 Score=54.04 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-----C---CCccccccccccChhhHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFES 633 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-----~---g~li~~~DI~~Lt~~~I~~ 633 (697)
|++-+||+|++|.||+..-+.+.+. ..|..||||+...+..+.|+...+. + ...++.+|..+. +..
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~----L~~ 260 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKR 260 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH----HHh
Confidence 5678999999999999888777774 5688999999999999988753221 0 122344555432 111
Q ss_pred hhhccCCccEEEecCCC
Q 005421 634 LIHKLGSIDFVICQNSV 650 (697)
Q Consensus 634 l~~~~g~~DLVIGGpPC 650 (697)
+....+.+|+||--+|=
T Consensus 261 ~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 261 YAKEGREFDYVINDLTA 277 (364)
T ss_dssp HHHHTCCEEEEEEECCS
T ss_pred hhccCCCceEEEECCCC
Confidence 11123679999988764
No 242
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=91.91 E-value=0.31 Score=47.22 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||-||.|.+...|.+. | . ..|+++|+++.+.+..+..... + ....++.+|+.+... .....+.+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~-~-~~v~~~~~d~~~~~~-----~~~~~~~~ 144 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE-R-ENIIPILGDANKPQE-----YANIVEKV 144 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT-C-TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc-C-CCeEEEECCCCCccc-----ccccCccE
Confidence 4678999999999999888765 5 2 3578999999987776654321 1 222244567765211 00011579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 145 D~v~~~~ 151 (230)
T 1fbn_A 145 DVIYEDV 151 (230)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9999543
No 243
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=91.85 E-value=0.17 Score=48.98 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...|.+.+. ..|+++|+++......+.+....+ ....++.+|+.++.. .+ .-+.||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~~--~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----TL--PDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----cc--CCCceE
Confidence 467899999999999999977775 357899999999888877543321 222234566654311 00 125799
Q ss_pred EEEe
Q 005421 643 FVIC 646 (697)
Q Consensus 643 LVIG 646 (697)
+|+.
T Consensus 131 ~V~~ 134 (236)
T 1zx0_A 131 GILY 134 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 244
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=91.83 E-value=0.2 Score=48.20 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=57.1
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCcccccc
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIED 622 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~-aGf-----~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~D 622 (697)
+..|......+.+|||+-||.|.++..+.+ .|. . ..|+++|+++......+......+ .....+..+|
T Consensus 75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 153 (227)
T 1r18_A 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD 153 (227)
T ss_dssp HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC
Confidence 344443344567999999999999888766 341 0 147899999988777666543211 1112244566
Q ss_pred ccccChhhHHHhhhccCCccEEEecCCCCcc
Q 005421 623 IQALTTKKFESLIHKLGSIDFVICQNSVPQI 653 (697)
Q Consensus 623 I~~Lt~~~I~~l~~~~g~~DLVIGGpPCQ~F 653 (697)
+.+.-. ..+.+|+|+...++..+
T Consensus 154 ~~~~~~--------~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 154 GRKGYP--------PNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp GGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred cccCCC--------cCCCccEEEECCchHHH
Confidence 654111 12579999988887654
No 245
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=91.78 E-value=0.28 Score=51.21 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|.+++.+.++|. ..|++||+++.+ ...+......+. ....++.+|+.++.. .+.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence 356899999999999999998885 358899999743 444443332221 122345677776531 1479
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+...+
T Consensus 118 D~Ivs~~~ 125 (348)
T 2y1w_A 118 DIIISEPM 125 (348)
T ss_dssp EEEEECCC
T ss_pred eEEEEeCc
Confidence 99998765
No 246
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=91.75 E-value=0.32 Score=48.07 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~-n--~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||+.||.|.++..+.++ |-. ..|+++|+++......+.+.... + .....+..+|+.++.. ..
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~ 169 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD 169 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence 4568999999999999988874 311 24789999999888777665432 1 1122245567765521 12
Q ss_pred CCccEEEecCCCC
Q 005421 639 GSIDFVICQNSVP 651 (697)
Q Consensus 639 g~~DLVIGGpPCQ 651 (697)
+.+|+|+-..|..
T Consensus 170 ~~~D~v~~~~~~~ 182 (280)
T 1i9g_A 170 GSVDRAVLDMLAP 182 (280)
T ss_dssp TCEEEEEEESSCG
T ss_pred CceeEEEECCcCH
Confidence 4799999876643
No 247
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=91.70 E-value=0.2 Score=48.11 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-- 637 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~-- 637 (697)
+.+||||.||.|+.++.+.++ |. .|+++|+++......+.++...+... ..++.+|+.++- ..+...
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~ 131 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD 131 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence 468999999999999988874 43 47899999999888888766543221 223456654321 111111
Q ss_pred cCCccEEEecCCCCcc
Q 005421 638 LGSIDFVICQNSVPQI 653 (697)
Q Consensus 638 ~g~~DLVIGGpPCQ~F 653 (697)
.+.||+|+-..++..+
T Consensus 132 ~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRY 147 (221)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCceEEEEEcCCcccc
Confidence 1579999877666554
No 248
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=91.66 E-value=0.14 Score=57.66 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChhHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHHhhcCCC--CCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-G-f~~k~VvaVEid~~ar~t~~~~~~~~n~~--g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++.. ...+..+|.-..+-. ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p-----~~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWP-----TQEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSC-----CSSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccc-----cccc
Confidence 4689999999999998776543 1 01135899999999888777643222211 112334443222100 0123
Q ss_pred CCccEEEecCCCC
Q 005421 639 GSIDFVICQNSVP 651 (697)
Q Consensus 639 g~~DLVIGGpPCQ 651 (697)
+.||+|+|=||-.
T Consensus 296 ~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 296 TNFDGVLMNPPYS 308 (542)
T ss_dssp CCBSEEEECCCTT
T ss_pred ccccEEEecCCcC
Confidence 5799999999976
No 249
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=91.62 E-value=0.15 Score=48.70 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=51.3
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
++.+.+.+.+|||+-||.|.+...|.+.|. .++++|+++......+... ....+..+|+.++..
T Consensus 34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 97 (239)
T 3bxo_A 34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-------- 97 (239)
T ss_dssp HHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC--------
T ss_pred HHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc--------
Confidence 333335678999999999999999998875 4788999999887776532 122345667765531
Q ss_pred ccCCccEEEe
Q 005421 637 KLGSIDFVIC 646 (697)
Q Consensus 637 ~~g~~DLVIG 646 (697)
.+.+|+|+.
T Consensus 98 -~~~~D~v~~ 106 (239)
T 3bxo_A 98 -GRKFSAVVS 106 (239)
T ss_dssp -SSCEEEEEE
T ss_pred -CCCCcEEEE
Confidence 146888873
No 250
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=91.56 E-value=0.29 Score=47.22 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|++++.+.+..= -..|+++|+++......+.++...+... ..+..+|+.+.- .... ..+.|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence 356899999999999998887620 1247899999999888887765443211 223456665431 1110 12579
Q ss_pred cEEEecCCCCc
Q 005421 642 DFVICQNSVPQ 652 (697)
Q Consensus 642 DLVIGGpPCQ~ 652 (697)
|+|+-..||..
T Consensus 128 D~I~~~~~~~~ 138 (233)
T 2gpy_A 128 DVLFIDAAKGQ 138 (233)
T ss_dssp EEEEEEGGGSC
T ss_pred cEEEECCCHHH
Confidence 99999888854
No 251
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=91.47 E-value=0.38 Score=49.92 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-+||||.||.|.+...+.+.|-.. .|+++|+++.+....+.+....+.. ..+..+|+.+.. .+.||+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence 3589999999999999998887432 4689999999887777765443222 223445554321 257999
Q ss_pred EEecCCCC
Q 005421 644 VICQNSVP 651 (697)
Q Consensus 644 VIGGpPCQ 651 (697)
|+..+|..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99988864
No 252
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=91.41 E-value=0.22 Score=49.16 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||+.||.|+.++.+.++ +. .|+++|+++......+.++...+... ..+..+|+.+. +..+ ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence 3578999999999999998876 43 47899999999888888776543322 22345565432 1111 112
Q ss_pred CCccEEEecCCCCc
Q 005421 639 GSIDFVICQNSVPQ 652 (697)
Q Consensus 639 g~~DLVIGGpPCQ~ 652 (697)
+.||+|+--.++..
T Consensus 135 ~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 135 PAFDLIFIDADKPN 148 (248)
T ss_dssp CCCSEEEECSCGGG
T ss_pred CCeEEEEECCchHH
Confidence 47999997777654
No 253
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.37 E-value=0.23 Score=44.83 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=33.9
Q ss_pred hHHHHHHHHhc-CCChHHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~M-GF~eeev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
+++++..|+.| ||++++|..|+.+|+-| ++.-+++|+..
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 67789999999 99999999999999988 56777887754
No 254
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=91.37 E-value=0.26 Score=47.66 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++......+...... ....++.+|+.++.. ..+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence 34678999999999999998876 65 4789999999887776532211 222345677766531 1257
Q ss_pred ccEEEecC
Q 005421 641 IDFVICQN 648 (697)
Q Consensus 641 ~DLVIGGp 648 (697)
+|+|+...
T Consensus 121 fD~v~~~~ 128 (266)
T 3ujc_A 121 FDLIYSRD 128 (266)
T ss_dssp EEEEEEES
T ss_pred EEEEeHHH
Confidence 89988654
No 255
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=91.36 E-value=0.38 Score=48.51 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=42.1
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421 559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 611 (697)
Q Consensus 559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~ 611 (697)
++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+....+.+-...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~ 68 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH 68 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3445578899999999999999999884 346899999999988888765543
No 256
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.25 E-value=0.21 Score=41.77 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=34.8
Q ss_pred hHHHHHHHHhcCCChHHH-HHHHHHhCCCCchHHHHHHHHHhhh
Q 005421 137 HIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI 179 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev-~~AI~~~G~da~~~~Lld~I~a~Q~ 179 (697)
+...+.+|..|||..... .+|+..++-+ ++.-+|+|+..+.
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 777899999999976655 9999999965 7999999998753
No 257
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=91.14 E-value=0.35 Score=50.57 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|.+++.+.++|. ..|+++|+++ .....+......+... ..++.+|+.++.- ..+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence 356899999999999999999986 3588999996 4444444333222222 2355678877631 12579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+.-+
T Consensus 135 D~Iis~~ 141 (349)
T 3q7e_A 135 DIIISEW 141 (349)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999754
No 258
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.09 E-value=0.18 Score=40.94 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=31.8
Q ss_pred hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005421 54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEY 90 (697)
Q Consensus 54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLty 90 (697)
-+..+++|||+ +..+.+|++..+. |++.-+|+|+..
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~ 56 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 47899999995 7799999999985 999999999973
No 259
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=91.08 E-value=0.33 Score=49.39 Aligned_cols=51 Identities=10% Similarity=-0.120 Sum_probs=41.5
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+++|+++.+....+.+-..
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~ 67 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRS 67 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 3445578899999999999999999884 34689999999998888776543
No 260
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=90.94 E-value=0.32 Score=50.72 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+-+||||-||.|.+++.+.++|. ..|+++|+++ .....+......+. ....++.+|+.++.. ..+.+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 132 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV 132 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence 356899999999999999999985 3588999997 55555554433222 122345677776531 12479
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999643
No 261
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=90.94 E-value=0.15 Score=52.32 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc-CC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~-~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~-g~ 640 (697)
.+-+|||+-||.|.++..|.+.|-+ -..|+++|+|+.....++..+ . ....++.+|+.++.-..+. ... ..
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~---~~~~~~ 114 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIA---RPGDEP 114 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGS---CSSSSC
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhc---ccccCC
Confidence 4678999999999999999887742 012789999999988887653 1 1223567899888754331 100 13
Q ss_pred ccEEEecCC
Q 005421 641 IDFVICQNS 649 (697)
Q Consensus 641 ~DLVIGGpP 649 (697)
...|||-.|
T Consensus 115 ~~~vv~NlP 123 (279)
T 3uzu_A 115 SLRIIGNLP 123 (279)
T ss_dssp CEEEEEECC
T ss_pred ceEEEEccC
Confidence 457777766
No 262
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=90.76 E-value=0.13 Score=51.88 Aligned_cols=76 Identities=21% Similarity=0.087 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+.||.|.++..|.+.|- ..|++||+|+.....++.. ......++.+|+.+++-..+ ++ ..
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~ 97 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL 97 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence 356899999999999999988862 3478999999988777542 11222356789988764432 12 34
Q ss_pred EEEecCCCC
Q 005421 643 FVICQNSVP 651 (697)
Q Consensus 643 LVIGGpPCQ 651 (697)
+|+|-+|=+
T Consensus 98 ~vv~NlPy~ 106 (249)
T 3ftd_A 98 KVVGNLPYN 106 (249)
T ss_dssp EEEEECCTT
T ss_pred EEEEECchh
Confidence 778877754
No 263
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=90.75 E-value=0.48 Score=45.20 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...+.+.|.. .++++|+++......+..... ....+..+|+.++.. ..+.+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence 4578999999999999999999862 478999999987777653221 122244566665431 124688
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+....
T Consensus 110 ~v~~~~~ 116 (243)
T 3bkw_A 110 LAYSSLA 116 (243)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 8886543
No 264
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=90.73 E-value=0.54 Score=44.83 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G 639 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~--g 639 (697)
.+-+|||+.||.|..++.+.++--.-..|+++|+++......+.++...+.. ...++.+|+.+. +..+.... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence 3468999999999999988875110124789999999988888877654321 122344565432 12221111 5
Q ss_pred CccEEEecCCCC
Q 005421 640 SIDFVICQNSVP 651 (697)
Q Consensus 640 ~~DLVIGGpPCQ 651 (697)
.+|+|+--+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999877654
No 265
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=90.63 E-value=0.26 Score=47.56 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...|.+.|. ..|+++|+++......+...... ....++.+|+.++.. ..+.+|
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence 467899999999999999888874 35789999999888777654321 122244567665531 124689
Q ss_pred EEEecC
Q 005421 643 FVICQN 648 (697)
Q Consensus 643 LVIGGp 648 (697)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 888543
No 266
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=90.62 E-value=0.5 Score=47.70 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+.. ...+..+|+.++. +
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 154 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E 154 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence 34678999999999999888776 86 3688999999888777655432211 1223456665542 4
Q ss_pred CccEEEecC
Q 005421 640 SIDFVICQN 648 (697)
Q Consensus 640 ~~DLVIGGp 648 (697)
.||+|+...
T Consensus 155 ~fD~v~~~~ 163 (318)
T 2fk8_A 155 PVDRIVSIE 163 (318)
T ss_dssp CCSEEEEES
T ss_pred CcCEEEEeC
Confidence 688887553
No 267
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=90.60 E-value=0.3 Score=48.01 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=51.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.... .. +...|+.++.. ..+.|
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~f 115 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGAF 115 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTCE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCCE
Confidence 45679999999999999999998863 6889999998877765321 12 55677776541 12579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 116 D~v~~~~ 122 (260)
T 2avn_A 116 EAVLALG 122 (260)
T ss_dssp EEEEECS
T ss_pred EEEEEcc
Confidence 9999644
No 268
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=90.59 E-value=0.28 Score=48.24 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
++++++.|+.|||+++.|..|+.+++-+ ++.-+++|++
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~ 200 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS 200 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 6789999999999999999999999886 5777777764
No 269
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.54 E-value=0.36 Score=38.53 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.8
Q ss_pred hhhhhccCCCChH-HHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 54 LRSSFIGMGFSPS-LVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 54 l~~~fi~MGF~~e-~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
-+..+.+|||+.+ .+.+|++..+- |++.-+|+|+...
T Consensus 12 ~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~ 49 (54)
T 2dah_A 12 QLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 4799999999665 57999999985 9999999999753
No 270
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=90.42 E-value=0.27 Score=46.20 Aligned_cols=74 Identities=23% Similarity=0.142 Sum_probs=49.8
Q ss_pred cccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhc
Q 005421 558 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 558 K~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+.+.+.+|||+-||.|.+...+ |+ ..++++|+++......+... ....+..+|+.++.. .
T Consensus 31 ~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~ 92 (211)
T 2gs9_A 31 KGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------P 92 (211)
T ss_dssp HTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------C
T ss_pred HHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------C
Confidence 333446789999999999987776 65 24789999999877766532 222345667766531 1
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+....
T Consensus 93 ~~~fD~v~~~~~ 104 (211)
T 2gs9_A 93 GESFDVVLLFTT 104 (211)
T ss_dssp SSCEEEEEEESC
T ss_pred CCcEEEEEEcCh
Confidence 247999986543
No 271
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=90.41 E-value=0.54 Score=45.42 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|.++..+.+. |.. |+++|+++......+......+.. ...+..+|+.++.. .+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 102 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE 102 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence 34678999999999999888765 653 689999998887777655433211 12245567765532 14
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.||+|+.
T Consensus 103 ~fD~V~~ 109 (256)
T 1nkv_A 103 KCDVAAC 109 (256)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 6787775
No 272
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=90.36 E-value=0.59 Score=43.50 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=52.6
Q ss_pred cccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 005421 566 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 566 tvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+|||+-||.|.+...+.+. | ..++++|+++......+......+.. ...++.+|+.++.- ..+.+|+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence 8999999999999999887 4 34789999999888777765443322 22345677776541 1257999
Q ss_pred EEecCCC
Q 005421 644 VICQNSV 650 (697)
Q Consensus 644 VIGGpPC 650 (697)
|+.....
T Consensus 115 v~~~~~l 121 (219)
T 3dlc_A 115 IVSRGSV 121 (219)
T ss_dssp EEEESCG
T ss_pred EEECchH
Confidence 9976543
No 273
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=90.26 E-value=0.31 Score=45.62 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=49.6
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+.+|||+-||.|.+...|.+.|.+ |+++|+++......+.. ....+...|+.++..... ...+.+|+
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD~ 119 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYDL 119 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCccE
Confidence 478999999999999999999874 68999999987776542 122234455554421100 01134898
Q ss_pred EEecCCCC
Q 005421 644 VICQNSVP 651 (697)
Q Consensus 644 VIGGpPCQ 651 (697)
|+......
T Consensus 120 v~~~~~l~ 127 (227)
T 3e8s_A 120 ICANFALL 127 (227)
T ss_dssp EEEESCCC
T ss_pred EEECchhh
Confidence 88765443
No 274
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=90.22 E-value=0.61 Score=46.17 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|++...+. +.|. .|+++|+++......+......+.. ...+..+|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 346789999999999998887 6675 4789999999887777655432211 1223456665442 4
Q ss_pred CccEEEec
Q 005421 640 SIDFVICQ 647 (697)
Q Consensus 640 ~~DLVIGG 647 (697)
.+|+|+..
T Consensus 129 ~fD~v~~~ 136 (287)
T 1kpg_A 129 PVDRIVSI 136 (287)
T ss_dssp CCSEEEEE
T ss_pred CeeEEEEe
Confidence 68888754
No 275
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=90.18 E-value=0.43 Score=44.76 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
..+.+|||+-||.|.+...+.+.|. .++++|+++......+... ..+...|+.++... + ..+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence 4568999999999999999988874 4789999998876654321 12445666543210 0 11467
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+....
T Consensus 95 D~v~~~~~ 102 (230)
T 3cc8_A 95 DCVIFGDV 102 (230)
T ss_dssp EEEEEESC
T ss_pred CEEEECCh
Confidence 88876543
No 276
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=90.18 E-value=0.03 Score=55.39 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=50.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+.||.|+++..+.+.|. .|+++|+|+......+.... ......++.+|+.++.-. ..+.+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f- 95 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY- 95 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence 467899999999999999988883 47899999876544432211 011223456777765421 01356
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
+|++-+|...
T Consensus 96 ~vv~n~Py~~ 105 (245)
T 1yub_A 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred EEEEeCCccc
Confidence 7888877553
No 277
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=90.09 E-value=0.31 Score=54.71 Aligned_cols=80 Identities=18% Similarity=0.062 Sum_probs=48.6
Q ss_pred CcccccCCCCChhHHHHHH--------cCC------ceeeEEEeeCCHHHHHHHHHHHhhcCCCCCc-cccccccccChh
Q 005421 565 LTMLSVFSGIGGAEVTLHR--------LGI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK 629 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~--------aGf------~~k~VvaVEid~~ar~t~~~~~~~~n~~g~l-i~~~DI~~Lt~~ 629 (697)
.+|+|.+||.|||-+.+.+ .+. .-..++++|+++.+.++.+.+..-++....+ +..+|.-....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 4899999999999877532 110 0135799999999988877644333222111 13444321110
Q ss_pred hHHHhhhccCCccEEEecCCCC
Q 005421 630 KFESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 630 ~I~~l~~~~g~~DLVIGGpPCQ 651 (697)
.....||+|++=||=.
T Consensus 325 ------~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 ------HPDLRADFVMTNPPFN 340 (544)
T ss_dssp ------CTTCCEEEEEECCCSS
T ss_pred ------cccccccEEEECCCcC
Confidence 0125799999999854
No 278
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=90.08 E-value=0.28 Score=48.08 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+.+||||-||.|..++.+-++ +-. ..|+++|+++......+.++...+.. . ..++.+|..++-. .+ ..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence 358999999999999988764 211 24789999999998888888764322 1 1233455543211 11 1268
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
||+|+--.+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999987655443
No 279
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=90.03 E-value=0.57 Score=48.47 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=50.7
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
+.+|||+-||.|.+++.+.++|. ..|++||+++ .....+......+... ..++.+|+.++.. ..+.+|
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D 107 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKVD 107 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCEE
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCccc
Confidence 56899999999999999999986 3588999995 4444554443322212 2245677776531 124799
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+.-++
T Consensus 108 ~Ivs~~~ 114 (328)
T 1g6q_1 108 IIISEWM 114 (328)
T ss_dssp EEEECCC
T ss_pred EEEEeCc
Confidence 9997654
No 280
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=89.96 E-value=0.54 Score=45.39 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+||||.||.|+++..|.+. |-. ..|+++|+++.+...+...-.. + ....++.+|+.+... +. ...+.|
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~ 148 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV 148 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence 4678999999999999888765 311 2478999997754333322211 1 223345677765321 11 012579
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+.-+|
T Consensus 149 D~V~~~~~ 156 (233)
T 2ipx_A 149 DVIFADVA 156 (233)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99997555
No 281
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=89.95 E-value=0.27 Score=43.72 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~-~~I~~l~~~~g 639 (697)
..+.+|||+-||.|++...+.+. |-. ..++++|+++ .... ....+...|+.+... +.+.... ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence 34568999999999999988776 422 2468899998 4211 122244567765431 1111111 125
Q ss_pred CccEEEecCCCCccc
Q 005421 640 SIDFVICQNSVPQIP 654 (697)
Q Consensus 640 ~~DLVIGGpPCQ~FS 654 (697)
.+|+|+..+|+..+.
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 799999998887554
No 282
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=89.93 E-value=0.35 Score=48.51 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+-+|||+|||.|...++..++|-+ ++++|+++.+..+.+..+
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence 4557999999999999999999964 688999999887776654
No 283
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=89.88 E-value=0.57 Score=45.22 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+-||.|.+...+.+. |. .++++|+++......+.. .+...+..+|+.++.. .+.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~ 95 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK 95 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence 4578999999999999988877 64 368999999987776653 1223355677776541 146
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
||+|+.....+
T Consensus 96 fD~v~~~~~l~ 106 (259)
T 2p35_A 96 ADLLYANAVFQ 106 (259)
T ss_dssp EEEEEEESCGG
T ss_pred cCEEEEeCchh
Confidence 89988765443
No 284
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=89.84 E-value=0.78 Score=42.77 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCcccccCCCCChhH-HHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGls-lGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+-||.|.+. .-+...|.+ |+++|+++.+....+......+ ....+...|+.++.. ..+.+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f 90 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM 90 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence 4578999999988873 445667763 6899999998887776554332 223345677766541 12468
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 91 D~v~~~~ 97 (209)
T 2p8j_A 91 SFVYSYG 97 (209)
T ss_dssp EEEEECS
T ss_pred eEEEEcC
Confidence 9998653
No 285
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=89.83 E-value=0.48 Score=47.72 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhh
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLI 635 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~a----Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~ 635 (697)
.+.+-+||||=||.|.+++.|.+. |. .|++||+++......+......+... ..++.+|+.++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-------- 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-------- 136 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC--------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc--------
Confidence 345789999999999999888764 43 36899999988777766544332221 224567887664
Q ss_pred hccCCccEEEecC
Q 005421 636 HKLGSIDFVICQN 648 (697)
Q Consensus 636 ~~~g~~DLVIGGp 648 (697)
++++|+|+...
T Consensus 137 --~~~~d~v~~~~ 147 (261)
T 4gek_A 137 --IENASMVVLNF 147 (261)
T ss_dssp --CCSEEEEEEES
T ss_pred --ccccccceeee
Confidence 24688887654
No 286
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=89.74 E-value=0.48 Score=50.92 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=46.7
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
-+|||+=||.|-+++-..++|- +.|++||.++.+..+ +..-..++... ..++.+|+.++.. ...+|+
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~Dv 152 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGA--RRVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVDA 152 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEEE
T ss_pred CEEEEeCCCccHHHHHHHHhCC--CEEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------CccccE
Confidence 4699999999999999999997 458999999754332 22222222212 2245677777642 247999
Q ss_pred EEe
Q 005421 644 VIC 646 (697)
Q Consensus 644 VIG 646 (697)
||.
T Consensus 153 ivs 155 (376)
T 4hc4_A 153 IVS 155 (376)
T ss_dssp EEC
T ss_pred EEe
Confidence 983
No 287
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=89.65 E-value=0.29 Score=47.35 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.3
Q ss_pred ccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421 559 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605 (697)
Q Consensus 559 ~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~ 605 (697)
+.++.+.+|||+-||.|.+...+.+.|.+ |+++|+++......+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~ 80 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence 34456789999999999999999998874 589999998766554
No 288
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=89.64 E-value=0.5 Score=38.20 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=25.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDA 165 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da 165 (697)
.++.+..|+.|||+.+.|.+|+.....|-
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv 35 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNI 35 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccH
Confidence 45679999999999999999999988873
No 289
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=89.46 E-value=0.28 Score=49.61 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
.+.+.+|||+-||.|.+.+.+..+..+-..|+++|+++......+.+....+... ..++.+|+.++.. . +
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-~ 186 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-E 186 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-S
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-C
Confidence 4567889999999999988873222222357899999998888877654322111 2245677776542 1 5
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.||+|+.
T Consensus 187 ~fD~v~~ 193 (305)
T 3ocj_A 187 GYDLLTS 193 (305)
T ss_dssp CEEEEEC
T ss_pred CeEEEEE
Confidence 7888885
No 290
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=89.38 E-value=0.69 Score=46.35 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhc--CCCCCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~--n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+|||+-||.|.+...|.+. +. ..|+++|+++......+...... ......++.+|+.++....-..+ ..
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV--DK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT--TS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccc--cC
Confidence 5788999999999999998842 22 35789999999887777654432 12233356788877652210000 12
Q ss_pred CCccEEEecCC
Q 005421 639 GSIDFVICQNS 649 (697)
Q Consensus 639 g~~DLVIGGpP 649 (697)
+.||+|+....
T Consensus 112 ~~fD~V~~~~~ 122 (299)
T 3g5t_A 112 QKIDMITAVEC 122 (299)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEeHhhH
Confidence 57999987643
No 291
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=89.21 E-value=0.62 Score=47.87 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc------CC-----CCCccccccccccChhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK 630 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~------n~-----~g~li~~~DI~~Lt~~~ 630 (697)
.+.+|||+.||.|.+++.+.++ |-. ..|+++|+++.+....+.+.... |+ ....+..+|+.++.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~ 182 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D 182 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence 4678999999999999998876 532 24789999999888777765431 11 112244577765431 1
Q ss_pred HHHhhhccCCccEEEecCCCC
Q 005421 631 FESLIHKLGSIDFVICQNSVP 651 (697)
Q Consensus 631 I~~l~~~~g~~DLVIGGpPCQ 651 (697)
+. .+.||+|+-..|+.
T Consensus 183 ~~-----~~~fD~V~~~~~~~ 198 (336)
T 2b25_A 183 IK-----SLTFDAVALDMLNP 198 (336)
T ss_dssp ----------EEEEEECSSST
T ss_pred cC-----CCCeeEEEECCCCH
Confidence 11 14699999776654
No 292
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=89.16 E-value=0.48 Score=52.21 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=50.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+.||.|.+.+.+.+.|. ..|+++|+++ .....+......+. ....++.+|+.++.. .+.+
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence 357899999999999999988875 3578999998 44454544332221 122345677766531 1479
Q ss_pred cEEEecCC
Q 005421 642 DFVICQNS 649 (697)
Q Consensus 642 DLVIGGpP 649 (697)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99997554
No 293
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=89.09 E-value=0.3 Score=50.43 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+++-+||+|.||.|++...+.+.+ ....|++||+|+...+..+.++... +.+...++.+|..+. +. ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence 355789999999999998887764 2345889999999998888876431 112222445565431 11 11
Q ss_pred cCCccEEEecCCC
Q 005421 638 LGSIDFVICQNSV 650 (697)
Q Consensus 638 ~g~~DLVIGGpPC 650 (697)
.+.+|+|+-.+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 3579999987664
No 294
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=89.06 E-value=0.7 Score=46.70 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=38.1
Q ss_pred hccccccCCCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 005421 554 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 554 LsvLK~~fp~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~ 607 (697)
+..|......+.+|||+-||.|.+++.+.+. +. .|+++|+++......+..
T Consensus 37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence 4444443334678999999999999988876 43 478999999887766653
No 295
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=88.80 E-value=0.44 Score=47.60 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhcc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
..+.+|||+-||.|.+...+.+. |. .|+++|+++......+......+ ....++.+|+.++.. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence 35689999999999999988776 44 36899999998877776544321 122345678776542 1
Q ss_pred CCccEEEecC
Q 005421 639 GSIDFVICQN 648 (697)
Q Consensus 639 g~~DLVIGGp 648 (697)
+.||+|+...
T Consensus 88 ~~fD~v~~~~ 97 (284)
T 3gu3_A 88 DKYDIAICHA 97 (284)
T ss_dssp SCEEEEEEES
T ss_pred CCeeEEEECC
Confidence 4799998654
No 296
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=88.58 E-value=0.44 Score=48.46 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+-+||+|-||.|++...+.+.. ....+.+||+|+...+..+.++...+ .+...++.+|+.+. +. ..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence 356789999999999998887663 23468899999999988888764321 11222345555432 11 11
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+..++
T Consensus 149 ~~~fD~Ii~d~~ 160 (283)
T 2i7c_A 149 TNTYDVIIVDSS 160 (283)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEEcCC
Confidence 357999998654
No 297
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=88.32 E-value=0.89 Score=35.49 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
+..+..|+.|||+.+.|.+|+.....+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nn 31 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNN 31 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcc
Confidence 456899999999999999999998887
No 298
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=87.95 E-value=0.89 Score=45.22 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=50.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++......+......+.. ...+..+|+.++.- ..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence 35679999999999999988876 76 3689999998877666554332221 12245567766531 114
Q ss_pred CccEEEec
Q 005421 640 SIDFVICQ 647 (697)
Q Consensus 640 ~~DLVIGG 647 (697)
.||+|+..
T Consensus 150 ~fD~v~~~ 157 (297)
T 2o57_A 150 SYDFIWSQ 157 (297)
T ss_dssp CEEEEEEE
T ss_pred CEeEEEec
Confidence 67877754
No 299
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=87.93 E-value=0.46 Score=38.36 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=32.4
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
-|..|++|||+.+-|.+|+..-.. |++.--++||.+-.
T Consensus 10 ~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~ 47 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHc
Confidence 489999999999999999987655 88888888887654
No 300
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=87.93 E-value=0.65 Score=42.18 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=33.6
Q ss_pred hHHHHHHHHhcCCCh-HHHHHHHHHhCCCCchHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA 177 (697)
Q Consensus 137 ~~~~~~~lv~MGF~e-eev~~AI~~~G~da~~~~Lld~I~a~ 177 (697)
+.+++..|+.|||+. +.+.+|+.+++-+ ++.-+|+|++.
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence 567899999999965 7999999999965 78889999865
No 301
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=87.80 E-value=0.47 Score=49.04 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
+.+.+||+|-||.|++...+.+.. ....|.+||+|+...+..+.++...+ .+...++.+|+.+. +..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~--- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER--- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence 456789999999999988887652 22457899999999888887764311 12223455666542 111
Q ss_pred ccCCccEEEecCCC
Q 005421 637 KLGSIDFVICQNSV 650 (697)
Q Consensus 637 ~~g~~DLVIGGpPC 650 (697)
..+.+|+|+..+|.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 23579999987654
No 302
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=87.61 E-value=0.44 Score=48.97 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh---c-CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~---~-n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+.+||+|-||.|++...+.+.. ....|++||+|+......+.++.. . ..+...++.+|+.++... . .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~--~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T--P 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S--C
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c--c
Confidence 456789999999999999888762 234688999999998888876531 1 111222445565432110 0 1
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+.-.|
T Consensus 167 ~~~fDvIi~d~~ 178 (304)
T 3bwc_A 167 DNTYDVVIIDTT 178 (304)
T ss_dssp TTCEEEEEEECC
T ss_pred CCceeEEEECCC
Confidence 357999998654
No 303
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=87.54 E-value=0.9 Score=44.07 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 611 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~ 611 (697)
.+.+|||+-||.|..+..+.+..=.-..|+++|+++......+.++...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3568999999999999988776210124789999999988888776543
No 304
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=87.47 E-value=0.24 Score=50.00 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=51.0
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhh
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
|..+.+.+-+||||=||.|.++..|...|.+ |++||+++...+..+ .+++..+..+|+.++.-
T Consensus 33 l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~-------- 95 (257)
T 4hg2_A 33 LGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL-------- 95 (257)
T ss_dssp HHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC--------
T ss_pred HHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc--------
Confidence 4444556678999999999999999999864 689999998654332 12233345566665532
Q ss_pred ccCCccEEEec
Q 005421 637 KLGSIDFVICQ 647 (697)
Q Consensus 637 ~~g~~DLVIGG 647 (697)
.-+.||+|+.+
T Consensus 96 ~~~sfD~v~~~ 106 (257)
T 4hg2_A 96 PPASVDVAIAA 106 (257)
T ss_dssp CSSCEEEEEEC
T ss_pred cCCcccEEEEe
Confidence 12579999864
No 305
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=87.44 E-value=0.48 Score=49.31 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+.+||||-||.|++...+.+.. ....|++||+|+.+....+.++... +.+...++.+|+.+. +. ..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence 345789999999999988887651 1245789999999998888765431 011122344555432 11 11
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+..++
T Consensus 187 ~~~fDvIi~d~~ 198 (321)
T 2pt6_A 187 TNTYDVIIVDSS 198 (321)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEECCc
Confidence 257999997664
No 306
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=87.39 E-value=0.76 Score=42.49 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHHhhcCCCCCccc-cccccccChh-hH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF 631 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~-------~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~-~~DI~~Lt~~-~I 631 (697)
+.+.+||||-||.|+++..+.+. |-. -..|+++|+++... .....++ .+|+.+.... .+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 34678999999999999988776 421 02478999998520 1122244 5677654321 11
Q ss_pred HHhhhccCCccEEEecCCC
Q 005421 632 ESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 632 ~~l~~~~g~~DLVIGGpPC 650 (697)
.... .-+.||+|+...++
T Consensus 90 ~~~~-~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 90 LEVL-PGRRADVILSDMAP 107 (196)
T ss_dssp HHHS-GGGCEEEEEECCCC
T ss_pred HHhc-CCCCCcEEEeCCCC
Confidence 1111 11379999976543
No 307
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=87.36 E-value=1.1 Score=43.70 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+.. ...+..+|+.++.- ..+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 129 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS 129 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence 4679999999999999888764 54 4789999998887777655433222 12345667766531 1246
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
||+|+....-
T Consensus 130 fD~v~~~~~l 139 (273)
T 3bus_A 130 FDAVWALESL 139 (273)
T ss_dssp EEEEEEESCT
T ss_pred ccEEEEechh
Confidence 8988865443
No 308
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=87.20 E-value=1.1 Score=41.60 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=28.6
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET 599 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ 599 (697)
+.+.+||||-||.|+++..+.+. +-.-..|+++|+++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~ 59 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM 59 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence 45678999999999999988754 200124789999984
No 309
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=87.18 E-value=0.71 Score=36.03 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=30.8
Q ss_pred hhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 005421 55 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 91 (697)
Q Consensus 55 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyq 91 (697)
|..++.|||+.+-|.||+..-.- |++.--+.|+.+-
T Consensus 8 I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 8 IENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 78899999999999999987655 8888888888653
No 310
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=87.16 E-value=1.8 Score=51.26 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCcccccc--ccchhhhHHH
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITLQ 215 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~--~~~~m~k~l~ 215 (697)
.+.+..|+.||||+.-..+|+..-|... .+.-.++|++..--.. -++.......... ..... ....-+.+..
T Consensus 653 ~~~l~~L~~mGf~~~~~~kal~~t~n~~-~e~a~~wl~~hmdd~d----i~~p~~~~~~~~~-~s~~~~~~~~~~e~i~~ 726 (854)
T 3ihp_A 653 ESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMDDPD----FANPLILPGSSGP-GSTSAAADPPPEDCVTT 726 (854)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHTTSCC-HHHHHHHHHHHTTSCG----GGSCCCCC---------------CCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHhhcCCCc-hHHHhHHHhhccCccc----ccccccccccccc-cccccccCCCCHHHHHH
Confidence 3578999999999999999999999876 6777888886642110 0111100000000 00000 0012356678
Q ss_pred HHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 005421 216 LLEMGFSENQVSLAIEKFGSKTPISELADKIFS 248 (697)
Q Consensus 216 L~~MGFseeEas~AI~rcG~da~i~eLvD~I~A 248 (697)
|..|||+.++|..|+...+- .++.-+|.|+.
T Consensus 727 l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs 757 (854)
T 3ihp_A 727 IVSMGFSRDQALKALRATNN--SLERAVDWIFS 757 (854)
T ss_dssp HHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence 99999999999999999976 57777787776
No 311
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=87.12 E-value=1.1 Score=44.41 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+.+|||+-||.|.+...+.+.|. .|+++|+++......+..+ +...+..+|+.++.. .+.||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence 457899999999999999988775 4789999999877766532 222355677776542 14689
Q ss_pred EEEecCC
Q 005421 643 FVICQNS 649 (697)
Q Consensus 643 LVIGGpP 649 (697)
+|+....
T Consensus 120 ~v~~~~~ 126 (279)
T 3ccf_A 120 AVFSNAM 126 (279)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 8886554
No 312
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=86.95 E-value=1.2 Score=36.47 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=31.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~---G~da~~~~Lld~I~ 175 (697)
..+.+..|+.+||++.|+.+|++++ .++.++++|+-..+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL 58 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL 58 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 5678999999999999999999998 44556777765543
No 313
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=86.76 E-value=0.82 Score=46.12 Aligned_cols=82 Identities=12% Similarity=0.001 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 642 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~D 642 (697)
.+-+|||+=||.|.++. +.+.+ + ..|+++|+|+.....++..... .....++.+|+.++.-..+.. ..+..+
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~~---~~~~~~ 92 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELAE---KMGQPL 92 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHHH---HHTSCE
T ss_pred CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhhc---ccCCce
Confidence 35689999999999999 87632 2 1278999999998877653321 112335678998876443311 013468
Q ss_pred EEEecCCCCc
Q 005421 643 FVICQNSVPQ 652 (697)
Q Consensus 643 LVIGGpPCQ~ 652 (697)
+|+|.+|=+-
T Consensus 93 ~vvsNlPY~i 102 (252)
T 1qyr_A 93 RVFGNLPYNI 102 (252)
T ss_dssp EEEEECCTTT
T ss_pred EEEECCCCCc
Confidence 9999998553
No 314
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=86.25 E-value=0.82 Score=44.85 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=55.4
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-- 637 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~-- 637 (697)
+-+||++-||.|+.++.+-++ +. .++++|+++......+.+|...+... ..++.+|..++ +..+...
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~~ 143 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQE 143 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSTT
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhccC
Confidence 458999999999999888765 43 47899999999999888887543221 12344555432 1222111
Q ss_pred -cCCccEEEecCCCCc
Q 005421 638 -LGSIDFVICQNSVPQ 652 (697)
Q Consensus 638 -~g~~DLVIGGpPCQ~ 652 (697)
.+.||+|+--.+|..
T Consensus 144 ~~~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 144 SEGSYDFGFVDADKPN 159 (237)
T ss_dssp CTTCEEEEEECSCGGG
T ss_pred CCCCcCEEEECCchHH
Confidence 367999998776654
No 315
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=86.20 E-value=0.87 Score=44.98 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh------cCCCCCccccccccccChhhHHHhhh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~------~n~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
.+.+||||=||.|.+.+.+.+.. +-..+++||+++......+..... .+.....++.+|+.+. +...+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~- 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF- 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence 45789999999999999887663 112478999999876655433211 1111223456777642 11111
Q ss_pred ccCCccEEEecCCCCcc
Q 005421 637 KLGSIDFVICQNSVPQI 653 (697)
Q Consensus 637 ~~g~~DLVIGGpPCQ~F 653 (697)
..+.+|+|+-.+|..-+
T Consensus 120 ~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp CTTCEEEEEEESCC---
T ss_pred CCcCeeEEEEeCCCchh
Confidence 12679999877665433
No 316
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=86.09 E-value=0.9 Score=44.48 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++......+... ....+..+|+.++.. ..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence 35678999999999999888876 64 3788999999877665432 122345567665531 114
Q ss_pred CccEEEecC
Q 005421 640 SIDFVICQN 648 (697)
Q Consensus 640 ~~DLVIGGp 648 (697)
.||+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 688887543
No 317
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=86.06 E-value=1.6 Score=43.12 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC----CCccccccccccChhhHHHhhhcc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~----g~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
.+.+||||-||.|.+...|...|. .|+++|+++......+......... ...+..+|+.++..+ + -..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence 457899999999999999999997 3689999998877765532111110 111234555444311 1 122
Q ss_pred CCccEEEe
Q 005421 639 GSIDFVIC 646 (697)
Q Consensus 639 g~~DLVIG 646 (697)
+.+|+|+.
T Consensus 129 ~~fD~V~~ 136 (293)
T 3thr_A 129 DGFDAVIC 136 (293)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 67999995
No 318
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=86.00 E-value=0.71 Score=48.04 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC----CCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n----~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+-+||+|-||.|++...+.+.. +...|.+||+|+......+.++...+ .+...++.+|+.+. +. ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence 345789999999999998887652 23468899999999988888764321 11122344555431 11 12
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.+|+|+..+|
T Consensus 179 ~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 179 KNEFDVIITDSS 190 (314)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCceEEEEcCC
Confidence 357999997654
No 319
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=85.91 E-value=1.9 Score=46.00 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc--ccccccccChhhHHHhhhccCC
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li--~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
.+.+|||++||.||=+..+-.++-. ..|+|+|+++.-.+.++.+-...... .+. ..-.|...+...+..+ ..+.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~-~~~~~~~v~v~~~D~~~~~~~--~~~~ 223 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPE-EIRDGNQVRVTSWDGRKWGEL--EGDT 223 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCT-TTTTSSSEEEECCCGGGHHHH--STTC
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhh-hhccCCceEEEeCchhhcchh--cccc
Confidence 3678999999999999888887743 46899999998777776654432111 000 0112233333333221 2357
Q ss_pred ccEEEecCCCCcc
Q 005421 641 IDFVICQNSVPQI 653 (697)
Q Consensus 641 ~DLVIGGpPCQ~F 653 (697)
||.|+-=+||.+-
T Consensus 224 fD~VLlDaPCSg~ 236 (359)
T 4fzv_A 224 YDRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEEECCCCCH
T ss_pred CCEEEECCccCCC
Confidence 9999999999874
No 320
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=85.57 E-value=1.3 Score=41.78 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+|||+.||.|..++.+.++ |. .|+++|+++......+.++...+... ..++.+|..++ +. ...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~ 126 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD 126 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence 468999999999999988775 43 47899999999888887776442211 11334444321 11 1124
Q ss_pred CccEEEecCCCCc
Q 005421 640 SIDFVICQNSVPQ 652 (697)
Q Consensus 640 ~~DLVIGGpPCQ~ 652 (697)
||+|+-..++..
T Consensus 127 -fD~v~~~~~~~~ 138 (210)
T 3c3p_A 127 -IDILFMDCDVFN 138 (210)
T ss_dssp -EEEEEEETTTSC
T ss_pred -CCEEEEcCChhh
Confidence 999987766543
No 321
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=85.55 E-value=0.5 Score=47.14 Aligned_cols=48 Identities=8% Similarity=-0.034 Sum_probs=40.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
+..-+||||=||.|-+++.+..+.=.. .++++|+|+.+..+.+.+...
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~ 95 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGK 95 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence 456899999999999999998774333 689999999999999987654
No 322
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=85.55 E-value=1.8 Score=39.17 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=36.1
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
..+.+|||+-||.|.+...+.+.+. .++++|+++......+..
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~ 58 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK 58 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh
Confidence 3467899999999999999998883 578999999987777653
No 323
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=85.35 E-value=0.73 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.6
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.+..|++|||++..|..|+..++- |.+.-+|.||.
T Consensus 166 kV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~ 200 (201)
T 3k9o_A 166 KIENLCAMGFDRNAVIVALSSKSW-DVETATELLLS 200 (201)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 689999999999999999999977 99999999986
No 324
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=85.31 E-value=2 Score=44.05 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
+.+.+||||=||.|+....+.+.|. ..|+++|+++.+....+..+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~ 93 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK 93 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence 5578999999999997666666664 2478999999998887775543
No 325
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.26 E-value=0.71 Score=38.64 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
-+.++..|||. ...+.+|++..+. |++.-+|+|+....
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~ 60 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 47889999995 5577999999984 99999999998543
No 326
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=85.13 E-value=2.5 Score=42.02 Aligned_cols=130 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
.-|+..|...||+++.|+.||+.. |==|-....+..+....-.+.
T Consensus 79 ~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~-------------------------------- 126 (221)
T 3d5l_A 79 SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL-------------------------------- 126 (221)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--------------------------------
Confidence 338888999999999998888755 544777777777765543100
Q ss_pred CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421 129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 208 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~ 208 (697)
-. .......|..-|++.+.|..|++++-++.-. +++.-++.- ..+... ..+...
T Consensus 127 ----~G--~~~I~~eL~~KGI~~~~I~~al~~~~~~~e~-e~a~~l~~K-k~~~~~------------------~~~~~~ 180 (221)
T 3d5l_A 127 ----KG--PGIIRQHLRQKGIGESDIDDALTQFTPEVQA-ELAKKLALK-LFRRYR------------------NQPERR 180 (221)
T ss_dssp ----CC--HHHHHHHHHHTTCCHHHHHHHGGGCCHHHHH-HHHHHHHHH-HHHHTT------------------TSCHHH
T ss_pred ----cc--HHHHHHHHHHcCCCHHHHHHHHHhCCHHHHH-HHHHHHHHH-HHhhcc------------------CCChHH
Confidence 00 3456678999999999999999987332111 111111111 111111 000011
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 005421 209 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI 239 (697)
Q Consensus 209 ~m~k~l-~L~~MGFseeEas~AI~rcG~da~i 239 (697)
...|+. +|..=||+-+.+..|+..+..+..+
T Consensus 181 ~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~~~ 212 (221)
T 3d5l_A 181 REQKVQQGLTTKGFSSSVYEMIKDEVVPQPDL 212 (221)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTC-------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhccchhhh
Confidence 235665 9999999999999998877555443
No 327
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=85.07 E-value=0.76 Score=45.60 Aligned_cols=83 Identities=10% Similarity=0.100 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhh--
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIH-- 636 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~-- 636 (697)
.+-+|||+-||.|..++.+.++ |. .|+++|+++......+.++...+... ..++.+|..++ +..+..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence 3468999999999999988775 43 47899999999888888887543211 11344555432 121211
Q ss_pred -ccCCccEEEecCCCCc
Q 005421 637 -KLGSIDFVICQNSVPQ 652 (697)
Q Consensus 637 -~~g~~DLVIGGpPCQ~ 652 (697)
..+.||+|+-..++..
T Consensus 152 ~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGTTCBSEEEECSCSTT
T ss_pred CCCCCEEEEEEcCchHH
Confidence 1367999998776654
No 328
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=84.84 E-value=0.66 Score=48.78 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=52.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+.+-+||+|-||.|++...+.+.. ....|++||+|+......+.++... +.+...++.+|+.+. +..+ .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence 455789999999999998887762 2345889999999998888776431 111222445665432 1110 1
Q ss_pred cCCccEEEecCC
Q 005421 638 LGSIDFVICQNS 649 (697)
Q Consensus 638 ~g~~DLVIGGpP 649 (697)
.+.||+|+--++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 257999997543
No 329
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=84.69 E-value=0.65 Score=48.96 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.++||+|-||.|++..-+.+. +. .+.+||||+......+.|+.....+...++.+|..+.- ..+ .-+.+
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f 160 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR 160 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence 469999999999999888873 54 36789999999998888764321122234556665331 110 12579
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+||...
T Consensus 161 DvIi~D~ 167 (317)
T 3gjy_A 161 DVIIRDV 167 (317)
T ss_dssp EEEEECC
T ss_pred CEEEECC
Confidence 9999754
No 330
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=84.52 E-value=0.64 Score=44.91 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.+||||-||.|.+...+.+.|. ..|+++|+++.+....+.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999988888886 457899999998888877654
No 331
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=84.37 E-value=1.6 Score=42.48 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS 640 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~--g~ 640 (697)
+-+|||+-||.|..++.+.++--.-..|+++|+++......+.++...+... ..+..+|+.+. +..+.... +.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~ 148 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE 148 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence 4589999999999998887751000247899999999888888776543211 11234554321 22221111 67
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
||+|+-..++.
T Consensus 149 fD~V~~d~~~~ 159 (232)
T 3cbg_A 149 FDLIFIDADKR 159 (232)
T ss_dssp EEEEEECSCGG
T ss_pred cCEEEECCCHH
Confidence 99999766643
No 332
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.17 E-value=1.7 Score=35.03 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHhh
Q 005421 137 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 178 (697)
Q Consensus 137 ~~~~~~~lv~MGF-~eeev~~AI~~~G~da~~~~Lld~I~a~Q 178 (697)
+..++..|..||| .++.-..|+.++|-+ ++..++.|+...
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhcc
Confidence 5668999999999 888889999998876 677777777654
No 333
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=83.88 E-value=2 Score=47.40 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChhHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHH-------hhcC--CCCCccccccccccChhhHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE 632 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~-~aGf~~k~VvaVEid~~ar~t~~~~~-------~~~n--~~g~li~~~DI~~Lt~~~I~ 632 (697)
.+-+||||=||.|.+.+.+. ..|. ..|++||+++.+...-+... ...+ .....++.+|+.++.-..
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-- 248 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-- 248 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence 46789999999999998775 4565 34789999987665554321 1111 112335678988764321
Q ss_pred HhhhccCCccEEEecCCC
Q 005421 633 SLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 633 ~l~~~~g~~DLVIGGpPC 650 (697)
.++.+|+|+..++|
T Consensus 249 ----~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 ----RIANTSVIFVNNFA 262 (438)
T ss_dssp ----HHHTCSEEEECCTT
T ss_pred ----ccCCccEEEEcccc
Confidence 12469999987776
No 334
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=83.76 E-value=11 Score=35.73 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=76.2
Q ss_pred hhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
-|+..|...||+++.|+.||+.. |==|-....+..+....-. +-
T Consensus 36 EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~--~~------------------------------- 82 (162)
T 3dfg_A 36 ELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASS--GY------------------------------- 82 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTT--TC-------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--cc-------------------------------
Confidence 38888999999999998888776 5446666666666544320 00
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccch
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT 209 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~~ 209 (697)
. .......|..-|++.+.|..|++++.++ -.+++--++.-....... . + ...
T Consensus 83 ----G--~~~I~~eL~~KGI~~~~I~~al~~~~~d--e~e~a~~l~~Kk~~~~~~------------~-----~---~~~ 134 (162)
T 3dfg_A 83 ----G--PLHIRAELGTHGLDSDAVSAAMATFEGD--WTENALDLIRRRFGEDGP------------V-----D---LAQ 134 (162)
T ss_dssp ----C--HHHHHHHHHHTTCCHHHHHHHHTTCCSC--HHHHHHHHHHHHHCTTCC------------C-----S---HHH
T ss_pred ----c--HHHHHHHHHHcCCCHHHHHHHHHhCcHh--HHHHHHHHHHHhcCCCCC------------C-----C---HHH
Confidence 0 3456688999999999999999998532 122222222211111000 0 0 112
Q ss_pred hhhHH-HHHhcCCCHHHHHHHHHh
Q 005421 210 MEITL-QLLEMGFSENQVSLAIEK 232 (697)
Q Consensus 210 m~k~l-~L~~MGFseeEas~AI~r 232 (697)
..|+. +|+.=||+-+.+..||..
T Consensus 135 k~K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 135 RRKAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHhc
Confidence 35665 999999999999988764
No 335
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=83.11 E-value=0.75 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 603 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t 603 (697)
.+.+|||+-||.|.+...|.+.+= -..|+++|+++.....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~ 66 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK 66 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence 467899999999999999988731 1357899999985543
No 336
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=83.00 E-value=1.2 Score=40.49 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.4
Q ss_pred hhhhhccCCCC-hHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
-+..|.+|||. ++.+.+||+..+- |++.-+|+|+.
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~ 104 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA 104 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 57999999995 4799999999995 99999999996
No 337
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=82.62 E-value=0.71 Score=46.73 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=48.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhc----CCCCCccccccccccChhhHHHhhhc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~----n~~g~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
+++-+||++-||.|++...+.+.| ..|.+||+|+...+..+.++... ..+...++.+|..+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 355789999999999988777665 45789999998877666544210 0111223345544321
Q ss_pred cCCccEEEecC
Q 005421 638 LGSIDFVICQN 648 (697)
Q Consensus 638 ~g~~DLVIGGp 648 (697)
+.+|+|+.-.
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 4689998764
No 338
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=82.50 E-value=2.4 Score=44.40 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCCcccccCCCCChhH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 562 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 562 p~~itvLSLFSGiGGls-lGL~~-aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+.+.+|||+=||.||++ +-+.+ .|. .|+++|+++.....-+.+....+.....++.+|+.++. .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence 45789999999999876 33333 465 37899999998877777655433222234567776642 15
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.||+|+-
T Consensus 188 ~FDvV~~ 194 (298)
T 3fpf_A 188 EFDVLMV 194 (298)
T ss_dssp CCSEEEE
T ss_pred CcCEEEE
Confidence 7999973
No 339
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=82.34 E-value=0.55 Score=46.48 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCcccccCCCCChhHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhc--
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-- 637 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a---Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~-- 637 (697)
+-+||||-||.|+.++.+.++ |. .|+++|+++......+.++...+... ..++.+|..++- ..+...
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~ 133 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGG 133 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccC
Confidence 468999999999999988874 32 47899999877666666665443221 224456665432 111111
Q ss_pred cCCccEEEecCCCCc
Q 005421 638 LGSIDFVICQNSVPQ 652 (697)
Q Consensus 638 ~g~~DLVIGGpPCQ~ 652 (697)
.+.||+|+-..++..
T Consensus 134 ~~~fD~V~~d~~~~~ 148 (242)
T 3r3h_A 134 EHQFDFIFIDADKTN 148 (242)
T ss_dssp SSCEEEEEEESCGGG
T ss_pred CCCEeEEEEcCChHH
Confidence 368999987766543
No 340
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=81.85 E-value=7 Score=37.52 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=79.4
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
.-|+..|...||+++.|..||... |==|-....+..+....-...
T Consensus 36 ~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~-------------------------------- 83 (177)
T 3e3v_A 36 KEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSD-------------------------------- 83 (177)
T ss_dssp HHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccc--------------------------------
Confidence 348999999999999999998765 444777777777765543210
Q ss_pred CCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCCCccccccccc
Q 005421 129 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 208 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~Ee~ede~~~~ 208 (697)
-. .......|..-|.+.+.|..|++++.++.-.+.+ .-++.- ..+.... .+...
T Consensus 84 ----~G--~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a-~~l~~K-k~~~~~~------------------~~~~~ 137 (177)
T 3e3v_A 84 ----KG--PKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKG-VTLAEK-LANRYSH------------------DSYRN 137 (177)
T ss_dssp ----CC--HHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHH-HHHHHH-HHHHTTT------------------SCHHH
T ss_pred ----cc--HHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHH-HHHHHH-HHhhccC------------------CChHH
Confidence 00 3456678999999999999999876432211111 111111 1111110 00011
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCC
Q 005421 209 TMEITL-QLLEMGFSENQVSLAIEKFGS 235 (697)
Q Consensus 209 ~m~k~l-~L~~MGFseeEas~AI~rcG~ 235 (697)
...|+. +|+.=||+-+.+..||..+..
T Consensus 138 ~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 138 KQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 235665 999999999999999987643
No 341
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=81.80 E-value=1.7 Score=44.62 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
++++++.|+.|||+++.|..|+.++|=+ ++.-+++|+.
T Consensus 215 ~~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~~ 252 (253)
T 3e46_A 215 YTKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 7789999999999999999999999886 5667777764
No 342
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=81.74 E-value=0.54 Score=49.07 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=55.6
Q ss_pred chhhhccccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChh
Q 005421 550 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 629 (697)
Q Consensus 550 i~~hLsvLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~ 629 (697)
+...|.+++. | ++-.+||||+|.|.+.+-+-+ |. ..++.||.++.+.++++.+.... ....++..|.. .
T Consensus 80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~----~ 148 (283)
T 2oo3_A 80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGV----S 148 (283)
T ss_dssp GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHH----H
T ss_pred HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHH----H
Confidence 4556677776 3 456799999999997655555 33 45789999999999997654321 11223333422 1
Q ss_pred hHHHhhhccCCccEEEecCCC
Q 005421 630 KFESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 630 ~I~~l~~~~g~~DLVIGGpPC 650 (697)
-+..+......+|||.==||=
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCC
T ss_pred HHHHhcCCCCCccEEEECCCC
Confidence 122222222369999988884
No 343
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=80.41 E-value=1 Score=44.22 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=49.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+=||.|.+...|.+.|.+ |+++|+++......+. .....++.+|+.++.- ..+.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence 35678999999999999999988853 6899999976433211 1122345677766541 12578
Q ss_pred cEEEecCCC
Q 005421 642 DFVICQNSV 650 (697)
Q Consensus 642 DLVIGGpPC 650 (697)
|+|+.....
T Consensus 96 D~v~~~~~l 104 (261)
T 3ege_A 96 DGVISILAI 104 (261)
T ss_dssp SEEEEESCG
T ss_pred eEEEEcchH
Confidence 988866543
No 344
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=80.23 E-value=1.2 Score=42.38 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=46.4
Q ss_pred cccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh
Q 005421 556 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 635 (697)
Q Consensus 556 vLK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~ 635 (697)
.+....+ +.+|||+-||.|.+...+... +++|+++......+.. +..+...|+.++..
T Consensus 41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------- 98 (219)
T 1vlm_A 41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------- 98 (219)
T ss_dssp HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence 3444445 679999999999998776543 6899999987776542 22244567665531
Q ss_pred hccCCccEEEecC
Q 005421 636 HKLGSIDFVICQN 648 (697)
Q Consensus 636 ~~~g~~DLVIGGp 648 (697)
..+.+|+|+...
T Consensus 99 -~~~~fD~v~~~~ 110 (219)
T 1vlm_A 99 -KDESFDFALMVT 110 (219)
T ss_dssp -CTTCEEEEEEES
T ss_pred -CCCCeeEEEEcc
Confidence 124688888543
No 345
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=79.01 E-value=9.9 Score=38.08 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=50.0
Q ss_pred hhhhhhhccCCCChHHHHHHHHH----hCCC---CHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCC
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEE----KGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQ 124 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe----~Ge~---d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~ 124 (697)
|.+++.|.+||++...|.|...- .+-+ +....+++| +.++=+... .+... .. .|.+-..
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL---~~lG~~~~~----i~~il----~~-~P~lL~~-- 71 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFL---KDVGIEDNQ----LGAFL----TK-NHAIFSE-- 71 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHH---HHHTCCGGG----HHHHH----HH-CTTGGGS--
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHH---HHcCCCHHH----HHHHH----Hh-CChhhhC--
Confidence 46788888999999888888777 5654 233444444 344422210 00000 00 0111110
Q ss_pred CCCCCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhC
Q 005421 125 PKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLG 162 (697)
Q Consensus 125 ~~e~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G 162 (697)
.-+. ...++..|...|++.++|.+++.+|-
T Consensus 72 -------~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 72 -------DLEN-LKTRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp -------CHHH-HHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred -------CHHH-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 1111 34567888899999999999888763
No 346
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=78.90 E-value=2.1 Score=51.12 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
.+.+||||-||.|.+...|.+.|-+...|++||+++.+....+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe 764 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 46789999999999999999887222347899999988777655
No 347
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.84 E-value=1.3 Score=40.09 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=30.6
Q ss_pred hhHHHHHhc-CCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 005421 211 EITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ 250 (697)
Q Consensus 211 ~k~l~L~~M-GFseeEas~AI~rcG~da~i~eLvD~I~Aaq 250 (697)
+++..|++| ||++++|..|+..|+-| +..-+++|+-..
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 678899999 99999999999999988 444456665443
No 348
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=78.07 E-value=2.5 Score=41.17 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 176 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a 176 (697)
..+.|..|+.|||+++.|..|...|+.+- +.=+.||+.
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~kne--e~Aan~L~~ 167 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNE--EAAANILFS 167 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCH--HHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCH--HHHHHHHHh
Confidence 56789999999999999999999999973 444566653
No 349
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=77.82 E-value=1.7 Score=42.61 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+-+|||+=||.|....-+.+.+. ..+++||+++......+.+....+ ....++.+|...+... + .-+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~----~--~~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT----L--PDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG----S--CTTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc----c--cccCC
Confidence 4678999999999999888877653 457899999998888877654322 1222334454333211 0 12568
Q ss_pred cEEEe
Q 005421 642 DFVIC 646 (697)
Q Consensus 642 DLVIG 646 (697)
|.|+.
T Consensus 130 D~i~~ 134 (236)
T 3orh_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98864
No 350
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=77.55 E-value=2.1 Score=47.71 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=47.6
Q ss_pred CCcccccCCCCChhHHHHHH----cC--------CceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhH
Q 005421 564 GLTMLSVFSGIGGAEVTLHR----LG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 631 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~----aG--------f~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I 631 (697)
+-+|+|-.||.|||-+...+ .+ +.-..++++|+++.+.++.+.+.--++.....+..+|--......
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~- 296 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE- 296 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-
Confidence 45899999999999766532 11 011247899999998877665322222211223334321111000
Q ss_pred HHhhhccCCccEEEecCCC
Q 005421 632 ESLIHKLGSIDFVICQNSV 650 (697)
Q Consensus 632 ~~l~~~~g~~DLVIGGpPC 650 (697)
......||+|+|=||=
T Consensus 297 ---~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 ---MGDKDRVDVILTNPPF 312 (530)
T ss_dssp ---CCGGGCBSEEEECCCS
T ss_pred ---hcccccceEEEecCCC
Confidence 0112479999999995
No 351
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=77.34 E-value=4.3 Score=40.62 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
..+.+||||-||.|+++.-+... |=. -.|+++|+++...+.+...-.. .+....+.+|++..... . ...+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence 34789999999999988777543 311 1489999999764333221111 12223456787754211 0 01257
Q ss_pred ccEEEecCC
Q 005421 641 IDFVICQNS 649 (697)
Q Consensus 641 ~DLVIGGpP 649 (697)
||+|+-..|
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 898875543
No 352
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=77.28 E-value=2.2 Score=44.85 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhc-----C---CCCCccccccccccChh---h
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----G---QTGELVQIEDIQALTTK---K 630 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~-----n---~~g~li~~~DI~~Lt~~---~ 630 (697)
.+.+||||-||.|.+...|.+. |-. ..|+++|+++......+.+.... + .....++.+|+.++... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 4678999999999998888764 211 24789999999887776543211 0 02233556788765321 1
Q ss_pred HHHhhhccCCccEEEecC
Q 005421 631 FESLIHKLGSIDFVICQN 648 (697)
Q Consensus 631 I~~l~~~~g~~DLVIGGp 648 (697)
+ .-+.||+|+...
T Consensus 162 ~-----~~~~fD~V~~~~ 174 (383)
T 4fsd_A 162 V-----PDSSVDIVISNC 174 (383)
T ss_dssp C-----CTTCEEEEEEES
T ss_pred C-----CCCCEEEEEEcc
Confidence 1 125799999654
No 353
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=75.39 E-value=1.6 Score=45.30 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 601 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar 601 (697)
.+.++||+=||.|+++..|.+.|. ..|++||+++...
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL 121 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQL 121 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCS
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHH
Confidence 467899999999999998888885 3589999998643
No 354
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=74.80 E-value=1.5 Score=44.56 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=28.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHH
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 599 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ 599 (697)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence 4457899999999999998887773 3789999884
No 355
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=74.22 E-value=4.6 Score=40.71 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=49.8
Q ss_pred CCCCcccccCCCCChhHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhcc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 638 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a--Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~ 638 (697)
..+.+|||+-||.|.+...+.+. +. .++++|++ ......+......+... ..+..+|+.+... .
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 230 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G 230 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence 56789999999999999988876 54 36789999 66666555443322111 2234556654321 1
Q ss_pred CCccEEEecCCCCcc
Q 005421 639 GSIDFVICQNSVPQI 653 (697)
Q Consensus 639 g~~DLVIGGpPCQ~F 653 (697)
+++|+|+....-..+
T Consensus 231 ~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHF 245 (335)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCCcEEEEcchhccC
Confidence 248988875554443
No 356
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=73.61 E-value=1.8 Score=44.91 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+-.|||.|||.|...++.+++|-+ .+++|+++....+.+..+
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF 294 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence 3456999999999999999999964 578999999887776544
No 357
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=73.53 E-value=1.9 Score=43.08 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=30.2
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCC--------CHHHHHHHHH
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLI 88 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~ilE~LL 88 (697)
.++..|+.|||+.+.|..|+...|=+ ..+.|||.||
T Consensus 171 ~~v~~~~~mg~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T 1tte_A 171 DLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL 214 (215)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcccchhhhhHHHHHHHHh
Confidence 37899999999999999999998732 3568888887
No 358
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=73.16 E-value=6.8 Score=42.88 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL 604 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~ 604 (697)
..+.+||||-||.|.+.+.+.+. |. ..|++||+++.+....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence 35678999999999999888774 53 3489999999876555
No 359
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=72.89 E-value=3.3 Score=33.76 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=26.8
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELAD 244 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rc---G~da~i~eLvD 244 (697)
|-+..|+.+||++.||..|+.++ ..+.++++++-
T Consensus 19 ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr 55 (62)
T 1ixs_A 19 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIK 55 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44558999999999999999998 44667776653
No 360
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=72.55 E-value=4 Score=36.47 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=35.3
Q ss_pred hhhhhhhccCCCChHHHHHHHHH----hCCC--CHHHHHHHHHHHhh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEE----KGQD--NVDLLLETLIEYNA 92 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe----~Ge~--d~d~ilE~LLtyqa 92 (697)
++++...+.|||....|.++|+. +|.. ..+.||..||.-+.
T Consensus 28 s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 28 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp CTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 45899999999999999999887 4766 79999999998665
No 361
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=72.37 E-value=1 Score=44.60 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
.+.+||||=||.|.+...+...|+ ..|+++|+++.+....+.|-.
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHh
Confidence 467899999999888777777886 458999999999998887643
No 362
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=71.99 E-value=10 Score=38.09 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=52.2
Q ss_pred CCCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
..|.+||||-||.|.++.-+.+. |=. -.|+++|+++...+.++..-.. .++...+.+|+.+...- ....+.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~~-----~~~~~~ 147 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEKY-----RHLVEG 147 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGGG-----TTTCCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCcccc-----ccccce
Confidence 45899999999999999888753 432 2478999999988777653221 12222345566544321 112367
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+.-.+.-
T Consensus 148 vDvVf~d~~~~ 158 (233)
T 4df3_A 148 VDGLYADVAQP 158 (233)
T ss_dssp EEEEEECCCCT
T ss_pred EEEEEEeccCC
Confidence 99988655543
No 363
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=71.74 E-value=3.6 Score=38.68 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=39.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+|||+-||.|.+...+ +. .++++|+++.. ..+..+|+.++.. ..+.+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~~~~~--------~~~~f 116 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMAQVPL--------EDESV 116 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTTSCSC--------CTTCE
T ss_pred CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccccCCC--------CCCCE
Confidence 45678999999999987665 33 46889999861 1144567766431 12469
Q ss_pred cEEEecC
Q 005421 642 DFVICQN 648 (697)
Q Consensus 642 DLVIGGp 648 (697)
|+|+...
T Consensus 117 D~v~~~~ 123 (215)
T 2zfu_A 117 DVAVFCL 123 (215)
T ss_dssp EEEEEES
T ss_pred eEEEEeh
Confidence 9999644
No 364
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=71.72 E-value=3.2 Score=41.43 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKLGKDA 165 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~G~da 165 (697)
.+++..|+.|||+++.|..|+.++|-|.
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 4689999999999999999999999874
No 365
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=71.20 E-value=6.3 Score=37.96 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=45.7
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
+.+.+||||=||.|.++.-+.+.+=. ..|+++|+++.+.+.+...-... .....+.+|+..... . ....+.|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~--~---~~~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK--Y---SGIVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG--T---TTTCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchh--h---cccccce
Confidence 35678999999999998877654212 24789999997543332211111 122234567665321 0 0112579
Q ss_pred cEEEec
Q 005421 642 DFVICQ 647 (697)
Q Consensus 642 DLVIGG 647 (697)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999865
No 366
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=70.47 E-value=4.8 Score=39.18 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=47.3
Q ss_pred CCCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHH------HHHHHHHHHhhcCC-CCCcccccc-ccccChhhHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFES 633 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~------ar~t~~~~~~~~n~-~g~li~~~D-I~~Lt~~~I~~ 633 (697)
.+.+|||+-||.|.+...+.+. |-. ..|+++|+++. .....+......+. ....++..| +... .+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~- 117 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP- 117 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC-
Confidence 4678999999999999888776 422 24789999985 44455544432211 111233444 2111 111
Q ss_pred hhhccCCccEEEecCCC
Q 005421 634 LIHKLGSIDFVICQNSV 650 (697)
Q Consensus 634 l~~~~g~~DLVIGGpPC 650 (697)
-..+.||+|+.....
T Consensus 118 --~~~~~fD~v~~~~~l 132 (275)
T 3bkx_A 118 --IADQHFDRVVLAHSL 132 (275)
T ss_dssp --GTTCCCSEEEEESCG
T ss_pred --CCCCCEEEEEEccch
Confidence 012579999865544
No 367
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=69.84 E-value=2.6 Score=41.65 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.8
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHH
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 603 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t 603 (697)
+.+.+||||-||.|+++..|.+.|. ..|+++|+++.....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~ 75 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAW 75 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCH
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHH
Confidence 3567899999999999999998885 258899999876443
No 368
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=69.83 E-value=14 Score=38.03 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
..+.+|||+-||.|.+...+.+.+-.. .++++|+ +......+......+.. ...++.+|+.+- +. .+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~------~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----LP------VT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CS------CC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----CC------CC
Confidence 456799999999999999988774222 3678999 87777776655433221 122345565431 11 24
Q ss_pred ccEEEecCCCC
Q 005421 641 IDFVICQNSVP 651 (697)
Q Consensus 641 ~DLVIGGpPCQ 651 (697)
+|+|+......
T Consensus 249 ~D~v~~~~vl~ 259 (374)
T 1qzz_A 249 ADVVLLSFVLL 259 (374)
T ss_dssp EEEEEEESCGG
T ss_pred CCEEEEecccc
Confidence 89888655443
No 369
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=65.56 E-value=14 Score=38.11 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=41.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-Ccccccccccc
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL 626 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~L 626 (697)
++.+.+|||+-||.|.+...+.+..=.. .++++|+ +......+......+..+ ..++.+|+.+.
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 4567899999999999999988773222 3578999 877776666554332222 22344565543
No 370
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=65.41 E-value=16 Score=37.28 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~-g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
..+.+|||+-||.|.+...+.+.+-.+ .++.+|+ +......+......+.. ...++.+|+.+- + ..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~------~~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L------PRK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C------SSC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C------CCC
Confidence 456789999999999999998876444 3567888 66666666554433221 122345565431 1 124
Q ss_pred ccEEEecCCC
Q 005421 641 IDFVICQNSV 650 (697)
Q Consensus 641 ~DLVIGGpPC 650 (697)
+|+|+.....
T Consensus 250 ~D~v~~~~vl 259 (360)
T 1tw3_A 250 ADAIILSFVL 259 (360)
T ss_dssp EEEEEEESCG
T ss_pred ccEEEEcccc
Confidence 8888765543
No 371
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=64.79 E-value=5.3 Score=40.92 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=33.0
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
..+..|++|||++..|..|+..++- |.+.-+|.||.
T Consensus 217 ~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLS 252 (253)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 3689999999999999999999987 89999999985
No 372
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=64.37 E-value=11 Score=40.22 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=44.3
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 627 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt 627 (697)
+-+||++-.|.|.++..|...+- .+-|++||+|+.....|+.... ...-.++.+|+-+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~---~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhcc---CCCEEEEECCccchh
Confidence 57899999999999999997521 1347899999999888876431 222336679995554
No 373
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=63.48 E-value=6.4 Score=43.22 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=45.9
Q ss_pred CCCCcccccCCC------CChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhh
Q 005421 562 PGGLTMLSVFSG------IGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 635 (697)
Q Consensus 562 p~~itvLSLFSG------iGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~ 635 (697)
..+.+||||=|| .||.++.+-+.-++-..|+++|+++... . ......++.+|+.++.-. ..+.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~--~~l~ 283 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFL--DRIA 283 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHH--HHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchh--hhhh
Confidence 456899999999 6888777654311213478999999862 1 122333567888776421 1111
Q ss_pred hccCCccEEEe
Q 005421 636 HKLGSIDFVIC 646 (697)
Q Consensus 636 ~~~g~~DLVIG 646 (697)
...+.||+|+.
T Consensus 284 ~~d~sFDlVis 294 (419)
T 3sso_A 284 RRYGPFDIVID 294 (419)
T ss_dssp HHHCCEEEEEE
T ss_pred cccCCccEEEE
Confidence 12378999984
No 374
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=63.38 E-value=12 Score=39.16 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=51.5
Q ss_pred CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 005421 564 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
+-.+||.-+|.||-+..+-+.+. .|+++|.|+.+....+. ... ....++.++-.++.. .+..+ ..+.||.
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~-~L~~~--g~~~vDg 92 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKR-HLAAL--GVERVDG 92 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHH-HHHHT--TCSCEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHH-HHHHc--CCCCcCE
Confidence 34699999999999999988753 47899999999877765 322 112234455554432 12111 2357999
Q ss_pred EEecCCCC
Q 005421 644 VICQNSVP 651 (697)
Q Consensus 644 VIGGpPCQ 651 (697)
|+-..++.
T Consensus 93 IL~DLGvS 100 (285)
T 1wg8_A 93 ILADLGVS 100 (285)
T ss_dssp EEEECSCC
T ss_pred EEeCCccc
Confidence 99866654
No 375
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=62.08 E-value=5.6 Score=41.80 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 605 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~ 605 (697)
.+.+|||+=||.|.+...|.+.|.+ |+++|+++......+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~---v~gvD~s~~~~~~a~ 146 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVR---HLGFEPSSGVAAKAR 146 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCE---EEEECCCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCc---EEEECCCHHHHHHHH
Confidence 5679999999999999999999974 689999998766554
No 376
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=61.86 E-value=13 Score=38.78 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=15.5
Q ss_pred hhhhhhhccCCCChHHHHHH
Q 005421 52 SNLRSSFIGMGFSPSLVDKV 71 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KA 71 (697)
..+++.|..+||+.+.+.++
T Consensus 20 ~~~v~~L~s~Gl~~~~~~~~ 39 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDMARKR 39 (343)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHh
Confidence 34899999999997765544
No 377
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=61.65 E-value=5.6 Score=41.49 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCH---HHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE---TNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~---~ar~t~~~~~ 608 (697)
.+-.|||.|||.|...++..++|-+ .+++|+++ ..+.+.+..+
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~~~~r~---~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHHHC
T ss_pred CCCEEEecCCCCCHHHHHHHHcCCc---EEEEECCccHHHHHHHHHHHH
Confidence 3556999999999999999999964 57899999 6655555433
No 378
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.51 E-value=55 Score=30.54 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=72.6
Q ss_pred hhhhhhhccC-----C-----CChHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCC
Q 005421 52 SNLRSSFIGM-----G-----FSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPE 118 (697)
Q Consensus 52 s~l~~~fi~M-----G-----F~~e~V~KAIqe~---Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~ 118 (697)
.-|+..|... | |+++.|+.||+.. |==|-....+..+....-. +-
T Consensus 23 ~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~--g~-------------------- 80 (159)
T 3c1d_A 23 QELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRK--GY-------------------- 80 (159)
T ss_dssp HHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHT--TC--------------------
T ss_pred HHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhC--Cc--------------------
Confidence 3477888875 7 9999998888765 4336667777666654321 00
Q ss_pred ccCCCCCCCCCCCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHhhhcccccccCCCCCCCCCCCC
Q 005421 119 ISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTN 198 (697)
Q Consensus 119 ~s~~~~~~e~~~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~a~Q~a~~~~~e~dd~~~~d~~~~ 198 (697)
. .......|..-|.+.+.|..|++++..+ -.+ ++--++.-.. +... . .
T Consensus 81 ---------------G--~~~I~~eL~~KGI~~~~i~~al~~~~~d-~~~-~a~~l~~kk~-~~~~------~-----~- 128 (159)
T 3c1d_A 81 ---------------G--PARIRQELNQKGISREATEKAMREADID-WAA-LARDQATRKY-GEPL------P-----T- 128 (159)
T ss_dssp ---------------C--HHHHHHHHHHTTCCHHHHHHHHHHHCCC-HHH-HHHHHHHHHH-CSSC------C-----C-
T ss_pred ---------------c--HHHHHHHHHHcCCCHHHHHHHHHHcCHh-HHH-HHHHHHHHHc-CCCC------C-----C-
Confidence 0 3455678999999999999999998653 122 2222222111 1100 0 0
Q ss_pred CccccccccchhhhHH-HHHhcCCCHHHHHHHHHh
Q 005421 199 EDKSDETLYGTMEITL-QLLEMGFSENQVSLAIEK 232 (697)
Q Consensus 199 Ee~ede~~~~~m~k~l-~L~~MGFseeEas~AI~r 232 (697)
+ .....|+. +|+.=||+-+.+..+|..
T Consensus 129 ----~---~~~~~K~~~~L~rrGF~~~~i~~~l~~ 156 (159)
T 3c1d_A 129 ----V---FSEKVKIQRFLLYRGYLMEDIQDIWRN 156 (159)
T ss_dssp ----S---HHHHHHHHHHHHHTTCCHHHHTTCC--
T ss_pred ----C---HHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 0 11235665 999999999999866653
No 379
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=60.40 E-value=11 Score=36.70 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=27.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETN 600 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~a 600 (697)
.+-+|||+=||.|.+...+.+..-. ..|+++|+++..
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ 60 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKEN 60 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGG
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHH
Confidence 4567999999999999888743322 347899999443
No 380
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=59.80 E-value=9.9 Score=37.60 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh-CCCCchHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL-GKDAPVYELVDFI 174 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~-G~da~~~~Lld~I 174 (697)
..+.++.|+.+||++.++.+|+.++ .++.++++|+-.-
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~A 198 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREA 198 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 5678999999999999999999998 5556677776553
No 381
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.39 E-value=15 Score=30.60 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=32.8
Q ss_pred hhhhhccCCCC---hHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFS---PSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~---~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
.+.+|..| || .+.|.++++.+|. |.+.-++.||..+.
T Consensus 21 ~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 21 AMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCC
Confidence 67889999 85 7899999999998 99999999999875
No 382
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=53.43 E-value=17 Score=36.35 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=31.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~---G~da~~~~Lld~I~ 175 (697)
..+.+..|+.+||++.++.+|+.++ .++.++++|+-.-+
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~AL 205 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSAL 205 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4578999999999999999999997 34566777776544
No 383
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=52.59 E-value=6.7 Score=45.87 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCcccccCCCCChhHH----HHHHcC---------CceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChh
Q 005421 564 GLTMLSVFSGIGGAEV----TLHRLG---------IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTK 629 (697)
Q Consensus 564 ~itvLSLFSGiGGlsl----GL~~aG---------f~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~ 629 (697)
...|+|+=||-|-|+. |.+.+| -. ..|+|||.++.+..+++..-.+ +... ..++.+|++++..-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~-~kVyAVEknp~A~~~l~~~~~N-g~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLK-VKLYIVEKNPNAIVTLKYMNVR-TWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCE-EEEEEEECCHHHHHHHHHHHHH-TTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccc-cEEEEEeCChHHHHHHHHHHhc-CCCCeEEEEeCchhhcccc
Confidence 4679999999999964 223344 22 3689999999887666653221 1112 33567888877531
Q ss_pred hHHHhhhccCCccEEEecC
Q 005421 630 KFESLIHKLGSIDFVICQN 648 (697)
Q Consensus 630 ~I~~l~~~~g~~DLVIGGp 648 (697)
. . ......+||||---
T Consensus 488 ~-~--~~~~ekVDIIVSEl 503 (745)
T 3ua3_A 488 A-K--DRGFEQPDIIVSEL 503 (745)
T ss_dssp H-H--HTTCCCCSEEEECC
T ss_pred c-c--cCCCCcccEEEEec
Confidence 0 0 01236799998543
No 384
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=52.46 E-value=23 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL 161 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~ 161 (697)
..+.+..|++|||+.+.|..+|...
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~ 70 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVR 70 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhC
Confidence 5677889999999999999998885
No 385
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=52.02 E-value=13 Score=38.37 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred CCCCcccccCC------CCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCcc-ccccccccChhhHHHh
Q 005421 562 PGGLTMLSVFS------GIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFESL 634 (697)
Q Consensus 562 p~~itvLSLFS------GiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li-~~~DI~~Lt~~~I~~l 634 (697)
+.+.+||||=| |.|+ .+..+++|-. ..|+++|+++. + . ...+ +.+|+.++...
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v-------~--~v~~~i~gD~~~~~~~----- 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V-------S--DADSTLIGDCATVHTA----- 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B-------C--SSSEEEESCGGGCCCS-----
T ss_pred CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C-------C--CCEEEEECccccCCcc-----
Confidence 45789999999 4477 6666676522 24789999987 1 1 2335 67898866421
Q ss_pred hhccCCccEEEecCCC
Q 005421 635 IHKLGSIDFVICQNSV 650 (697)
Q Consensus 635 ~~~~g~~DLVIGGpPC 650 (697)
+.||+|+.-.++
T Consensus 122 ----~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 122 ----NKWDLIISDMYD 133 (290)
T ss_dssp ----SCEEEEEECCCC
T ss_pred ----CcccEEEEcCCc
Confidence 479999975443
No 386
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=50.58 E-value=3.3 Score=41.41 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.++..|+.|||++..|.+|++.+|- |.+..+|.||.
T Consensus 179 ~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~ 214 (216)
T 2pwq_A 179 VIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLE 214 (216)
T ss_dssp -------------------------------------
T ss_pred hHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhc
Confidence 4789999999999999999999988 56677777774
No 387
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=50.18 E-value=17 Score=34.32 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=50.0
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+.-+++..|..-|++.+.|..|+++..+ +...++..|+.=. +... .. .
T Consensus 83 G~~~I~~eL~~KGI~~~~I~~al~~~~~-de~e~a~~l~~Kk-~~~~-~~-----------------------------~ 130 (162)
T 3dfg_A 83 GPLHIRAELGTHGLDSDAVSAAMATFEG-DWTENALDLIRRR-FGED-GP-----------------------------V 130 (162)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTTCCS-CHHHHHHHHHHHH-HCTT-CC-----------------------------C
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCcH-hHHHHHHHHHHHh-cCCC-CC-----------------------------C
Confidence 3456888899999999999999999854 3333333333211 1100 00 0
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCC
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 163 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~ 163 (697)
+ -.. ..+.+.+|+.=||+-+.|..||+...+
T Consensus 131 ~-~~~--k~K~~~~L~rrGF~~~~I~~~l~~~~~ 161 (162)
T 3dfg_A 131 D-LAQ--RRKAADLLARRGFDGNSIRLATRFDLE 161 (162)
T ss_dssp S-HHH--HHHHHHHHHHTTCCHHHHHHHTTC---
T ss_pred C-HHH--HHHHHHHHHHCCCCHHHHHHHHhcCcC
Confidence 0 011 567778999999999999999876443
No 388
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=49.86 E-value=12 Score=36.51 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=31.3
Q ss_pred hhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHH
Q 005421 54 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 89 (697)
Q Consensus 54 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLt 89 (697)
.|..++.|||++++|.+|...-+. |.+.=.++||.
T Consensus 133 aI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~ 167 (171)
T 2qsf_X 133 AISRLCELGFERDLVIQVYFACDK-NEEAAANILFS 167 (171)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 589999999999999999999877 88888888885
No 389
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=49.69 E-value=18 Score=39.15 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+..|++||||=|.-||.+.-+-+.|.. |+|||+-+-.-... . .++...+.+|+.++... .+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~-----~--~~~V~~~~~d~~~~~~~--------~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLM-----D--TGQVTWLREDGFKFRPT--------RSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHH-----T--TTCEEEECSCTTTCCCC--------SSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhc-----c--CCCeEEEeCccccccCC--------CCC
Confidence 456899999999999999999888863 78999876543221 1 12222345666554332 257
Q ss_pred ccEEEecCCCCc
Q 005421 641 IDFVICQNSVPQ 652 (697)
Q Consensus 641 ~DLVIGGpPCQ~ 652 (697)
+|+|+.==-|++
T Consensus 271 ~D~vvsDm~~~p 282 (375)
T 4auk_A 271 ISWMVCDMVEKP 282 (375)
T ss_dssp EEEEEECCSSCH
T ss_pred cCEEEEcCCCCh
Confidence 999987655554
No 390
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=49.14 E-value=12 Score=39.11 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=40.0
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 610 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~ 610 (697)
+..-+||||=||.|=|++.+..+.- -..++++|||+.+....+.+...
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~ 178 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTR 178 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence 4467999999999999999987743 35789999999999999887654
No 391
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=48.75 E-value=27 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHH----hCCC-CchHHHHHHHHHhhh
Q 005421 139 EKRASLLMMNFSVNEVDFALDK----LGKD-APVYELVDFITAAQI 179 (697)
Q Consensus 139 ~~~~~lv~MGF~eeev~~AI~~----~G~d-a~~~~Lld~I~a~Q~ 179 (697)
..+...+.|||....|..++++ .|.. .++++||.-|+.++.
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 4678899999999999999887 4544 568999999998875
No 392
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=48.13 E-value=19 Score=37.09 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=36.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
+.+-+||||=||.|=|++.+. .+ ..++++|||+.....++++-.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~ 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAR 147 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHH
Confidence 446799999999999999988 33 358999999999999988743
No 393
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.17 E-value=27 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDA 165 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da 165 (697)
..+++.+|..-|.+++||..|+++.|...
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 67899999999999999999999998865
No 394
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=46.08 E-value=6.8 Score=39.88 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=28.9
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHH
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 599 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ 599 (697)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence 4457899999999999998887774 3789999884
No 395
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=45.97 E-value=27 Score=34.43 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=38.3
Q ss_pred hHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEe
Q 005421 577 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVIC 646 (697)
Q Consensus 577 lslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~----l~~~~g~~DLVIG 646 (697)
....|.+.|.+ |+.++.++.....+..-....+....+.+..||++-. .+.. ....+|.+|+++-
T Consensus 24 iA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~--~v~~~~~~~~~~~G~iD~lvn 92 (256)
T 4fs3_A 24 VAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDE--EVINGFEQIGKDVGNIDGVYH 92 (256)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHH--HHHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHH--HHHHHHHHHHHHhCCCCEEEe
Confidence 34557789985 3456777665554444333333333445567887543 3333 3346799999984
No 396
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=45.71 E-value=4.4 Score=40.53 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 175 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~G~da~~~~Lld~I~ 175 (697)
..+++..|+.|||+++.|..|+..+|-+. +.-++.|+
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~--~~~~~~l~ 213 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNE--TLALNTLL 213 (216)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCch--HHHHHHHh
Confidence 35689999999999999999999999883 33344443
No 397
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=45.55 E-value=46 Score=32.71 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCcccccCCCCChhHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHHhhcCC--CC-Ccccccccccc
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ--TG-ELVQIEDIQAL 626 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a-Gf~~k~VvaVEid~~ar~t~~~~~~~~n~--~g-~li~~~DI~~L 626 (697)
.-+||++=| |.-++-+-++ | ..|++||+|+.-....+.||...+. .. ..++.+|+.+.
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCEEEEECc--hHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 356788755 5555555554 3 3589999999999999999987653 22 22556786554
No 398
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=44.82 E-value=41 Score=36.38 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=32.1
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHh
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 609 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~ 609 (697)
-+||=|=.|.||...-+.+... +.|..||||+...+..+.|+.
T Consensus 207 krVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp 249 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMR 249 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCC
T ss_pred CeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhch
Confidence 4677666677776666666553 568889999999999998864
No 399
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=42.12 E-value=14 Score=38.08 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=30.7
Q ss_pred ccccCCC-CCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421 557 LKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 557 LK~~fp~-~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
+.+++|. .-+.++.|+|.|+....+ .. +.++.+|+|+...+.|+.
T Consensus 28 i~~~lp~~~~~yvEpF~GggaV~~~~--~~---~~~i~ND~n~~Lin~y~~ 73 (284)
T 2dpm_A 28 IRELIPKTYNRYFEPFVGGGALFFDL--AP---KDAVINDFNAELINCYQQ 73 (284)
T ss_dssp HHHHSCSSCSCEEETTCTTCHHHHHH--CC---SEEEEEESCHHHHHHHHH
T ss_pred HHHHhccccCEEEeecCCccHHHHhh--hc---cceeeeecchHHHHHHHH
Confidence 3344444 347999999988875544 22 357889999988776643
No 400
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=41.82 E-value=22 Score=37.76 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=35.2
Q ss_pred hhhhhhhccCCCChHHHHHHHHHh----CCC--CHHHHHHHHHHHhh
Q 005421 52 SNLRSSFIGMGFSPSLVDKVIEEK----GQD--NVDLLLETLIEYNA 92 (697)
Q Consensus 52 s~l~~~fi~MGF~~e~V~KAIqe~----Ge~--d~d~ilE~LLtyqa 92 (697)
++++..-+.|||+.+.|.++|+.. |.. .++.||+.||.-+.
T Consensus 120 ~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~~~~ 166 (345)
T 3t6p_A 120 TPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAED 166 (345)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHhccc
Confidence 567888899999999999998754 776 89999999998765
No 401
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=41.32 E-value=31 Score=39.65 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=45.2
Q ss_pred CCcccccCCCCChhHHH----HHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC--CccccccccccChhhHHHhhhc
Q 005421 564 GLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHK 637 (697)
Q Consensus 564 ~itvLSLFSGiGGlslG----L~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g--~li~~~DI~~Lt~~~I~~l~~~ 637 (697)
...|+++=||-|-|... ..++|-++ -|+|||.++.|..+++..- .|.-+ ..++.+|+++++..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~v-kVyAVEknp~A~~a~~~v~--~N~~~dkVtVI~gd~eev~LP-------- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRI-KLYAVEKNPNAVVTLENWQ--FEEWGSQVTVVSSDMREWVAP-------- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEE-EEEEEESCHHHHHHHHHHH--HHTTGGGEEEEESCTTTCCCS--------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHHHH--hccCCCeEEEEeCcceeccCC--------
Confidence 35689998999987432 23445443 3789999999887766532 22222 22567888887532
Q ss_pred cCCccEEE
Q 005421 638 LGSIDFVI 645 (697)
Q Consensus 638 ~g~~DLVI 645 (697)
.++||||
T Consensus 427 -EKVDIIV 433 (637)
T 4gqb_A 427 -EKADIIV 433 (637)
T ss_dssp -SCEEEEE
T ss_pred -cccCEEE
Confidence 3688887
No 402
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=41.30 E-value=37 Score=35.36 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=12.7
Q ss_pred hcCCCHHHHHHHHHhh
Q 005421 218 EMGFSENQVSLAIEKF 233 (697)
Q Consensus 218 ~MGFseeEas~AI~rc 233 (697)
.+||+++|+..+|.+|
T Consensus 249 ~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 249 SLGCTEEEVQKFVLSY 264 (343)
T ss_dssp TTTCCHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHhC
Confidence 6888888888877766
No 403
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=41.07 E-value=11 Score=38.48 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=31.0
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 606 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~ 606 (697)
+.+++|..-+.++.|+|.|+.... ... +.++.+|+|+...+.|+.
T Consensus 21 i~~~~p~~~~yvEpF~Ggg~V~~~--~~~---~~~i~ND~n~~lin~y~~ 65 (278)
T 2g1p_A 21 IKRHLPKGECLVEPFVGAGSVFLN--TDF---SRYILADINSDLISLYNI 65 (278)
T ss_dssp HHHHCCCCSEEEETTCTTCHHHHT--CCC---SEEEEEESCHHHHHHHHH
T ss_pred HHHhccccCeEEeeccCccHHHHh--hcc---cceEEEeccHHHHHHHHH
Confidence 344455556899999998876443 322 457889999988766654
No 404
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=38.64 E-value=20 Score=35.34 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=26.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh-CCCCChhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKF-GSKTPISELA 243 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rc-G~da~i~eLv 243 (697)
|-...|+.+||++.||..|+.++ .++.++++|+
T Consensus 162 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 195 (203)
T 1cuk_A 162 EAVARLVALGYKPQEASRMVSKIARPDASSETLI 195 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 45559999999999999999998 5566676664
No 405
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=38.05 E-value=48 Score=33.65 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 641 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~~ 641 (697)
.+.+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+... ..++.+|+.+... . ..+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~~~ 249 (352)
T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-----F--EGGAA 249 (352)
T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-----G--TTCCE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-----c--CCCCc
Confidence 36899999999999999998764332 3567899 555555555443322111 2234456554321 0 11358
Q ss_pred cEEEecCCC
Q 005421 642 DFVICQNSV 650 (697)
Q Consensus 642 DLVIGGpPC 650 (697)
|+|+...-.
T Consensus 250 D~v~~~~vl 258 (352)
T 3mcz_A 250 DVVMLNDCL 258 (352)
T ss_dssp EEEEEESCG
T ss_pred cEEEEeccc
Confidence 888865443
No 406
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=36.99 E-value=30 Score=29.17 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=24.6
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCC
Q 005421 211 EITLQLLEMGFSENQVSLAIEKFGSKTP 238 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rcG~da~ 238 (697)
.|+.+|..-|-+++|+..|+.|.|..++
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 5667999999999999999999998643
No 407
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=34.89 E-value=19 Score=37.01 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.3
Q ss_pred CCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeC
Q 005421 561 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET 596 (697)
Q Consensus 561 fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEi 596 (697)
++.+.+||||-||.||++.-+.+.| .|++||+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEec
Confidence 4456899999999999999888875 2678888
No 408
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=34.15 E-value=12 Score=37.81 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=32.1
Q ss_pred ccccCCCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 005421 557 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 607 (697)
Q Consensus 557 LK~~fp~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~ 607 (697)
+.+++|..-+.++.|+|.|+..+.+ . .+ ++.+|+|+...+.++..
T Consensus 18 i~~~lP~~~~yvEpF~GggaV~~~~--~---~~-~viNDin~~li~~~~~i 62 (259)
T 1yf3_A 18 LKSHFPKYNRFVDLFCGGLSVSLNV--N---GP-VLANDIQEPIIEMYKRL 62 (259)
T ss_dssp HHHTCCCCSEEEETTCTTCTTGGGS--C---SS-EEEECSCHHHHHHHHHH
T ss_pred HHHhCcccCeEEEecCCccHHHHhc--c---cc-EEEecCChHHHHHHHHH
Confidence 4445555568999999998875543 2 14 77899999988777653
No 409
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=33.69 E-value=39 Score=34.00 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEe
Q 005421 578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVIC 646 (697)
Q Consensus 578 slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l----~~~~g~~DLVIG 646 (697)
...|.+.|.+ |+.++.++...+.+..-....+ ...+.+..||++-. .++.+ ..++|++|++|-
T Consensus 24 A~~la~~Ga~---Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~--~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 24 AKKFALNDSI---VVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKK--DVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHH--HHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 4556789975 4567888765544333222222 22334567887553 34333 346799999984
No 410
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=33.67 E-value=1.3e+02 Score=29.91 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhhhhhccCCCChHHHHHHHHHhCC---CCHHHHHHHHHHH-hhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCC
Q 005421 53 NLRSSFIGMGFSPSLVDKVIEEKGQ---DNVDLLLETLIEY-NALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 128 (697)
Q Consensus 53 ~l~~~fi~MGF~~e~V~KAIqe~Ge---~d~d~ilE~LLty-qal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~ 128 (697)
+.++.|...||+.+.|.|+|..+-. -+.+.|...+-.. +.++=+..+ ..... ...|.+-..
T Consensus 78 p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~----i~~ll-----~~~P~il~~------ 142 (270)
T 3m66_A 78 TRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKK----TRDLV-----VRLPRLLTG------ 142 (270)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHH----HHHHH-----HHSGGGGTS------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHH----HHHHH-----HhCCcceee------
Confidence 4677888999999999999988743 2444544444333 233311100 00000 000111100
Q ss_pred CCCCchhhhHHHHHHH-HhcCCChHHHHHHHHHh
Q 005421 129 PNVMDEGLHIEKRASL-LMMNFSVNEVDFALDKL 161 (697)
Q Consensus 129 ~~~~s~~~~~~~~~~l-v~MGF~eeev~~AI~~~ 161 (697)
+.+. ...++..| ..|||++++|.+++.+|
T Consensus 143 ---s~e~-~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 143 ---SLEP-VKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp ---CSHH-HHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred ---chHH-HHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 0111 34566655 59999999999998885
No 411
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.72 E-value=52 Score=31.42 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=50.9
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+.-+++..|..-|.+.+.|..|+++..+++.-..+..|+.=. +..... .
T Consensus 85 G~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk-~~~~~~---~--------------------------- 133 (177)
T 3e3v_A 85 GPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKL-ANRYSH---D--------------------------- 133 (177)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHTTT---S---------------------------
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHH-HhhccC---C---------------------------
Confidence 345578889999999999999998764333222222222211 110000 0
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
.......+.+.+|+.=||+-+.|..||+++..+
T Consensus 134 --~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 134 --SYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp --CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred --ChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCC
Confidence 000115566789999999999999999886544
No 412
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=32.58 E-value=9.3 Score=37.47 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHH
Q 005421 138 IEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELV 171 (697)
Q Consensus 138 ~~~~~~lv~MGF~eeev~~AI~~~---G~da~~~~Ll 171 (697)
.+.+..|+.+||++.++.+|++++ .++.++++|+
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~li 183 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 183 (191)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 457889999999999999999987 2334445544
No 413
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=32.51 E-value=20 Score=35.44 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+||||=||.|.+.+-+.+.+. ..|+++|+++.+....+.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHH
Confidence 467899999999985543333222 24789999999988777654
No 414
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=32.10 E-value=38 Score=27.20 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 005421 137 HIEKRASLLMMNFSVNEVDFALDKL 161 (697)
Q Consensus 137 ~~~~~~~lv~MGF~eeev~~AI~~~ 161 (697)
..+++.+|..-|.+++||..|++|+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 6689999999999999999999874
No 415
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=31.92 E-value=33 Score=34.42 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEe
Q 005421 578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVIC 646 (697)
Q Consensus 578 slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l----~~~~g~~DLVIG 646 (697)
...|.+.|.+ |+.++.++.....+.. .......+..||++-. .++.+ ..++|++|++|-
T Consensus 19 a~~la~~Ga~---V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~--~v~~~v~~~~~~~g~iDiLVN 81 (247)
T 3ged_A 19 CLDFLEAGDK---VCFIDIDEKRSADFAK-----ERPNLFYFHGDVADPL--TLKKFVEYAMEKLQRIDVLVN 81 (247)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHT-----TCTTEEEEECCTTSHH--HHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCHH--HHHHHHHHHHHHcCCCCEEEE
Confidence 5567789985 4567888765443321 1223334567887543 33333 346799999994
No 416
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=30.91 E-value=36 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=26.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELAD 244 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rc---G~da~i~eLvD 244 (697)
|-...|+.+||++.||..|+.++ .++.++++|+-
T Consensus 166 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 202 (212)
T 2ztd_A 166 PVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALR 202 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44559999999999999999987 44667776653
No 417
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=30.83 E-value=1.1e+02 Score=30.00 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=40.0
Q ss_pred hhccccchhhhccccccCC----CCCcccccCCCCChhHH----HHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC
Q 005421 544 CFQTDTLGYHLSVLKSMFP----GGLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG 615 (697)
Q Consensus 544 sfqvdti~~hLsvLK~~fp----~~itvLSLFSGiGGlsl----GL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g 615 (697)
.|+.+-..+|...+++.+. .+.++| +..|.||+-. .|.+.|.+ |+.+..++.....+.......+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~k~vl-ITGasggIG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~ 79 (286)
T 1xu9_A 4 QHQHQHQHQHQQPLNEEFRPEMLQGKKVI-VTGASKGIGREMAYHLAKMGAH---VVVTARSKETLQKVVSHCLELGAAS 79 (286)
T ss_dssp -----------CCCSSCCCGGGGTTCEEE-ESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCSE
T ss_pred hhhccchhhhccccccCCChhhcCCCEEE-EeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHhCCCc
Confidence 3444444555555544332 122232 3344455432 34578975 4556677654333222111111111
Q ss_pred CccccccccccChhhHHHh----hhccCCccEEE
Q 005421 616 ELVQIEDIQALTTKKFESL----IHKLGSIDFVI 645 (697)
Q Consensus 616 ~li~~~DI~~Lt~~~I~~l----~~~~g~~DLVI 645 (697)
..++..|+++.. .+..+ ...+|++|+||
T Consensus 80 ~~~~~~Dl~d~~--~v~~~~~~~~~~~g~iD~li 111 (286)
T 1xu9_A 80 AHYIAGTMEDMT--FAEQFVAQAGKLMGGLDMLI 111 (286)
T ss_dssp EEEEECCTTCHH--HHHHHHHHHHHHHTSCSEEE
T ss_pred eEEEeCCCCCHH--HHHHHHHHHHHHcCCCCEEE
Confidence 234457887542 33332 23468999998
No 418
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.26 E-value=24 Score=34.93 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=49.5
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+.-.++..|..-|++.+.|..|+++.-+++...++..|+.=. +..... .
T Consensus 128 G~~~I~~eL~~KGI~~~~I~~al~~~~~~~e~e~a~~l~~Kk-~~~~~~------------------------------~ 176 (221)
T 3d5l_A 128 GPGIIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKL-FRRYRN------------------------------Q 176 (221)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHGGGCCHHHHHHHHHHHHHHH-HHHTTT------------------------------S
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhhccC------------------------------C
Confidence 345578889999999999999999874332222222232211 111000 0
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 164 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~G~d 164 (697)
+ ......+.+.+|+.=||+-+.|..|++++..+
T Consensus 177 ~--~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~~~ 209 (221)
T 3d5l_A 177 P--ERRREQKVQQGLTTKGFSSSVYEMIKDEVVPQ 209 (221)
T ss_dssp C--HHHHHHHHHHHHHHTTCCHHHHHHHTTC----
T ss_pred C--hHHHHHHHHHHHHhCCCCHHHHHHHHHhccch
Confidence 0 00115677889999999999999998776444
No 419
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=29.73 E-value=55 Score=32.95 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=44.3
Q ss_pred CcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 005421 565 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 643 (697)
Q Consensus 565 itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~-~g~li~~~DI~~Lt~~~I~~l~~~~g~~DL 643 (697)
.+|||+-||.|.+...+.+..-.. .++++|+ +......+..+...+. ....++.+|+.+ . + .+++|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~------~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E---V------PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C---C------CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C---C------CCCCCE
Confidence 789999999999999988763122 3578999 7665555544322110 111233455543 1 1 135888
Q ss_pred EEecCCCC
Q 005421 644 VICQNSVP 651 (697)
Q Consensus 644 VIGGpPCQ 651 (697)
|+......
T Consensus 237 v~~~~vl~ 244 (334)
T 2ip2_A 237 YLLSRIIG 244 (334)
T ss_dssp EEEESCGG
T ss_pred EEEchhcc
Confidence 88655443
No 420
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=29.24 E-value=31 Score=33.63 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=44.4
Q ss_pred CCcccccCCCCChhHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccC
Q 005421 564 GLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 639 (697)
Q Consensus 564 ~itvLSLFSGiGGlslGL~~a----Gf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g 639 (697)
+-+||||=||.|+.+..|.+. +-. ..|++||+++......+. . .....++.+|+.++.. +..+ ...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~--l~~~--~~~ 151 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTT--FEHL--REM 151 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGG--GGGG--SSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHH--HHhh--ccC
Confidence 358999999999999988776 211 247899999876433321 1 1123355678876421 1101 112
Q ss_pred CccEEEe
Q 005421 640 SIDFVIC 646 (697)
Q Consensus 640 ~~DLVIG 646 (697)
.+|+|+-
T Consensus 152 ~fD~I~~ 158 (236)
T 2bm8_A 152 AHPLIFI 158 (236)
T ss_dssp CSSEEEE
T ss_pred CCCEEEE
Confidence 5898773
No 421
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.13 E-value=55 Score=30.54 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=48.7
Q ss_pred CchhhhhhhccCCCChHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCCCCccCCCCCCCCC
Q 005421 50 SGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 129 (697)
Q Consensus 50 S~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~ilE~LLtyqal~~s~s~ssds~~~~~~d~~~~~~~~~s~~~~~~e~~ 129 (697)
+.-+++..|..-|.+.+.|..||++..+ +....+..|+.=. +... .. +
T Consensus 81 G~~~I~~eL~~KGI~~~~i~~al~~~~~-d~~~~a~~l~~kk-~~~~-~~-~---------------------------- 128 (159)
T 3c1d_A 81 GPARIRQELNQKGISREATEKAMREADI-DWAALARDQATRK-YGEP-LP-T---------------------------- 128 (159)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHCC-CHHHHHHHHHHHH-HCSS-CC-C----------------------------
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCH-hHHHHHHHHHHHH-cCCC-CC-C----------------------------
Confidence 4556788899999999999999999876 3333333333211 2110 00 0
Q ss_pred CCCchhhhHHHHHHHHhcCCChHHHHHHHHHh
Q 005421 130 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKL 161 (697)
Q Consensus 130 ~~~s~~~~~~~~~~lv~MGF~eeev~~AI~~~ 161 (697)
+ ... ..+.+.+|+.=||+-+.|..||+++
T Consensus 129 ~-~~~--~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 129 V-FSE--KVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp S-HHH--HHHHHHHHHHTTCCHHHHTTCC---
T ss_pred C-HHH--HHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 0 011 6678899999999999998887654
No 422
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=28.44 E-value=86 Score=32.61 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcC-----CCCCccccccccccChhhHHHhhh
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 636 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n-----~~g~li~~~DI~~Lt~~~I~~l~~ 636 (697)
|+.-+||=|=.|.||...-+.+.- .++.|..||||+...+..+.|+...+ .+...++++|-.+.-. .
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~-------~ 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN-------Q 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS-------C
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh-------h
Confidence 455667777667777655555432 24567889999999999998875321 2333355666654321 1
Q ss_pred ccCCccEEEecCC
Q 005421 637 KLGSIDFVICQNS 649 (697)
Q Consensus 637 ~~g~~DLVIGGpP 649 (697)
....+|+||--.+
T Consensus 154 ~~~~yDvIi~D~~ 166 (294)
T 3o4f_A 154 TSQTFDVIISDCT 166 (294)
T ss_dssp SSCCEEEEEESCC
T ss_pred ccccCCEEEEeCC
Confidence 2357999997654
No 423
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.78 E-value=54 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=31.5
Q ss_pred hhhhhccCCCC---hHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 005421 54 LRSSFIGMGFS---PSLVDKVIEEKGQDNVDLLLETLIEYNA 92 (697)
Q Consensus 54 l~~~fi~MGF~---~e~V~KAIqe~Ge~d~d~ilE~LLtyqa 92 (697)
-+.+|..| || .+.|.++++.++. |.|.-++.||..+.
T Consensus 12 ~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 12 DLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSC
T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcC
Confidence 47788888 74 7899999999987 99999999998654
No 424
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=25.84 E-value=69 Score=32.21 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEec
Q 005421 578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 647 (697)
Q Consensus 578 slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~----l~~~~g~~DLVIGG 647 (697)
...|-+.|.+ |+.++.++........-....+ ...+.+..||++-. .++. ...++|++|++|-.
T Consensus 26 a~~la~~Ga~---Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~~--~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 26 AEGLAAAGAR---VILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDEL--AIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHTTCE---EEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHH--HHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHH--HHHHHHHHHHHHCCCCcEEEEC
Confidence 4567789985 4557888654332222112221 22334567887643 3433 33468999999853
No 425
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.68 E-value=52 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.6
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh
Q 005421 211 EITLQLLEMGFSENQVSLAIEKF 233 (697)
Q Consensus 211 ~k~l~L~~MGFseeEas~AI~rc 233 (697)
.|+.+|..-|-+++|+..|+.|+
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC
Confidence 56679999999999999999885
No 426
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=24.04 E-value=1.1e+02 Score=29.58 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEecC
Q 005421 578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 648 (697)
Q Consensus 578 slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~----l~~~~g~~DLVIGGp 648 (697)
...|.+.|.++ +.+..+......++..-...+.....++..|+++.. .+.. +...+|.+|+||-..
T Consensus 26 a~~l~~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 26 ARSLHEAGARL---IFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA--EIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHTTCEE---EEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHCCCEE---EEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH--HHHHHHHHHHHHhCCeeEEEEcc
Confidence 45566889864 344555543333433222222112334567888653 3333 233568999998654
No 427
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=23.94 E-value=45 Score=33.52 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 005421 578 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 646 (697)
Q Consensus 578 slGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g~li~~~DI~~Lt~~~I~~l~~~~g~~DLVIG 646 (697)
...|.+.|.+ |+.++.++.... .........+..||++ .+.++.++..+|++|++|-
T Consensus 28 a~~la~~Ga~---Vv~~~~~~~~~~-------~~~~~~~~~~~~Dv~~--~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 28 AMQFAELGAE---VVALGLDADGVH-------APRHPRIRREELDITD--SQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHTTCE---EEEEESSTTSTT-------SCCCTTEEEEECCTTC--HHHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHh-------hhhcCCeEEEEecCCC--HHHHHHHHHhcCCCCEEEE
Confidence 4567799986 455677765321 1111222234578875 4567778888999999984
No 428
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=23.44 E-value=1.6e+02 Score=28.95 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCcccccCCCCChhHHHH----HHcCCcee-eEEEeeCCHHHHHHHHHHH
Q 005421 563 GGLTMLSVFSGIGGAEVTL----HRLGIKLK-GVISIETSETNRRILKRWW 608 (697)
Q Consensus 563 ~~itvLSLFSGiGGlslGL----~~aGf~~k-~VvaVEid~~ar~t~~~~~ 608 (697)
.+.+|||+=||.|.++..+ ...+-.+. .++++|+++......+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH
Confidence 4578999999999876432 12111122 2489999999877776643
No 429
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=22.43 E-value=50 Score=31.62 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=29.3
Q ss_pred CCCCCcccccCCCCC-hhHHHHHH-cCCceeeEEEeeCCHHHH
Q 005421 561 FPGGLTMLSVFSGIG-GAEVTLHR-LGIKLKGVISIETSETNR 601 (697)
Q Consensus 561 fp~~itvLSLFSGiG-GlslGL~~-aGf~~k~VvaVEid~~ar 601 (697)
+..+-++|++=||-| -.+.-|.+ .|+. |.++||++.+.
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av 72 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHG 72 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSST
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCcccc
Confidence 344679999988887 46777775 9986 58899998764
No 430
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=22.40 E-value=1.6e+02 Score=30.41 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCCCcccccCCCCChhHHHHHHcCCceeeEEEeeCCHHHHHHHHHHHhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 005421 562 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 640 (697)
Q Consensus 562 p~~itvLSLFSGiGGlslGL~~aGf~~k~VvaVEid~~ar~t~~~~~~~~n~~g-~li~~~DI~~Lt~~~I~~l~~~~g~ 640 (697)
+...+|||+=||.|.+...+.+..-.. .++.+|+ +......+......+... ..+..+|+.+ .+ ..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~----~~------p~~ 268 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE----TI------PDG 268 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT----CC------CSS
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC----CC------CCC
Confidence 456899999999999999998874333 3578999 776666666554332111 2234455541 11 126
Q ss_pred ccEEEecCCCCcc
Q 005421 641 IDFVICQNSVPQI 653 (697)
Q Consensus 641 ~DLVIGGpPCQ~F 653 (697)
+|+|+...-...+
T Consensus 269 ~D~v~~~~vlh~~ 281 (369)
T 3gwz_A 269 ADVYLIKHVLHDW 281 (369)
T ss_dssp CSEEEEESCGGGS
T ss_pred ceEEEhhhhhccC
Confidence 8888866554444
No 431
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=20.98 E-value=20 Score=35.05 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCHHHHHHHHHhh---CCCCChhhh
Q 005421 212 ITLQLLEMGFSENQVSLAIEKF---GSKTPISEL 242 (697)
Q Consensus 212 k~l~L~~MGFseeEas~AI~rc---G~da~i~eL 242 (697)
-...|+.+||++.||..|+.++ .++.++++|
T Consensus 149 a~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~l 182 (191)
T 1ixr_A 149 AVMALAALGFKEAQARAVVLDLLAQNPKARAQDL 182 (191)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3448999999999999999987 334455554
Done!