BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005422
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 108/124 (87%)
Query: 473 VRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGR 532
VRRVPLF+ MDER+LDAICERLKP L TE ++LVREGDPVNEMLFIIRG L+S TT+GGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 533 TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVAS 592
+GF+N + GDFCG+ELLTWALDP+ LPSSTRTVK+++EVEAFAL AD+LKFVAS
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 593 QFRR 596
QFRR
Sbjct: 128 QFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 409 WRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHI 468
+ + D + ++ +LP L Q + + Q W G+D LLK P +LR DI H+
Sbjct: 14 YHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHL 73
Query: 469 CLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT 528
+L+ ++PLF+ L ++ +K + C G FL+R+GD + + F+ G ++
Sbjct: 74 NKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD 132
Query: 529 NGGRTGFFNSCRIGPGDFCGEELLT 553
N +G GD G + LT
Sbjct: 133 NTVLA------ILGKGDLIGSDSLT 151
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LPP+ RQ + Y ++++ + DEE +L L LR +I
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + ++ +L+ + G +++REG +M FI G + S
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVL 124
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 125 TKGNK-----ETKLADGSYFGE 141
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LPP+ RQ + Y ++++ + DEE +L L LR +I
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + ++ +L+ + G +++REG +M FI G + T
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 125
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T ++ G + GE
Sbjct: 126 KGNKET------KLADGSYFGE 141
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 71
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 72 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 130
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 131 TKGNK-----EMKLSDGSYFGE 147
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 127
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 128 TKGNK-----EMKLSDGSYFGE 144
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
++R K E++M +R+LP LR + Y +Y++ + DE + + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANY 67
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C DLV VP F D + + L+ + ++++EG + M FI +G +D
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 528 TNG 530
++G
Sbjct: 128 SDG 130
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 127
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 128 TKGNK-----EMKLSDGSYFGE 144
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 8 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 66
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 67 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 125
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 126 TKGNK-----EMKLSDGSYFGE 142
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP ++RQ + Y ++++ + DEE +L L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNF 71
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRG 521
C LV +PLF D + A+ +L+ + G +++REG +M FI G
Sbjct: 72 NCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHG 125
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNF 68
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 127
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 128 TKGNK-----EMKLSDGSYFGE 144
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LPP+ RQ + Y ++++ + DEE +L L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 71
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
LV +PLF D + ++ +L+ + G +++REG +M FI G + S
Sbjct: 72 NXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVL 130
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 131 TKGNK-----ETKLADGSYFGE 147
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+M +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 12 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 70
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
LV +PLF D + A+ +LK + G +++REG +M FI G + S
Sbjct: 71 NNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 129
Query: 528 TNGGRTGFFNSCRIGPGDFCGE-ELLT 553
T G + ++ G + GE LLT
Sbjct: 130 TKGNK-----EMKLSDGSYFGEISLLT 151
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 408 EWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467
+++ K EQ+ +LP + RQ + Y ++++ + DE+ +L L LR +I
Sbjct: 10 QYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNF 68
Query: 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYT 527
C LV PLF D + A +LK + G +++REG + FI G + S
Sbjct: 69 NCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV-SVL 127
Query: 528 TNGGRTGFFNSCRIGPGDFCGE 549
T G + ++ G + GE
Sbjct: 128 TKGNK-----EXKLSDGSYFGE 144
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 446 GVDEEVLLKGLPTDLRR-DIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTF 504
G+ +L G ++RR D R+ LV VPLF ++ +L I L+ G
Sbjct: 204 GLWAGILATGFYQEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAV 261
Query: 505 LVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIL 564
+ R G+P + M F++ G + T N +GPG F GE L +PR
Sbjct: 262 ICRIGEPGDRMFFVVEGSVSVATP--------NPVELGPGAFFGEMALISG-EPR----- 307
Query: 565 PSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAA 618
+ TV + + V +L + D + + S S ++ FR + + R AA
Sbjct: 308 ---SATVSAATTVSLLSLHSADFQMLCS-----SSPEIAEIFRKTALERRGAAA 353
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 72
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +PR + + ++T ++ S+ + F + +A
Sbjct: 73 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 125
Query: 592 SQFRR 596
FR+
Sbjct: 126 EIFRK 130
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +PR + + ++T ++ S+ + F + +A
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 592 SQFRR 596
FR+
Sbjct: 122 EIFRK 126
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +PR + + ++T ++ S+ + F + +A
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 592 SQFRR 596
FR+
Sbjct: 122 EIFRK 126
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +PR + + ++T ++ S+ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 592 SQFRR 596
FR+
Sbjct: 124 EIFRK 128
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +P + + ++T ++ S+ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPESATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 592 SQFRR 596
FR+
Sbjct: 124 EIFRK 128
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGG 531
LV VPLF ++ +L I L+ G + R G+P + M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 532 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVA 591
N +GPG F GE L + +P + + ++T ++ S+ + F + +A
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPWSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 592 SQFRR 596
FR+
Sbjct: 124 EIFRK 128
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN- 529
D++RR PLF +D+ + G L EGDP + + + G + + T+
Sbjct: 5 DVLRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP 64
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK- 588
GR +GP + GE L DP P T T +++EV+ AL DL+
Sbjct: 65 DGRENXL--AVVGPSELIGELSL---FDPGP------RTATGTALTEVKLLALGHGDLQP 113
Query: 589 ------FVASQFRRLHSKQLR 603
VA+ R +++LR
Sbjct: 114 WLNVRPEVATALLRAVARRLR 134
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD 524
KR + + + +V + + +D+ + + L+P +G +V +G+P +E I+ G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 525 SYTTNGGRTGFFNSCRIGPGDFCGE 549
F R+GP D+ GE
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGE 231
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
LF +D+ I + + P G ++++GD + I +G +D Y N T
Sbjct: 42 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATS--- 98
Query: 538 SCRIGPGDFCGEELLTWALDPRPSVI 563
+G G GE L + PR + +
Sbjct: 99 ---VGEGGSFGELALIYGT-PRAATV 120
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD 524
KR + + + +V + + +D+ + + L+P +G +V +G+P +E I+ G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 525 SYTTNGGRTGFFNSCRIGPGDFCGE 549
F R+GP D+ GE
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGE 233
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
LF +D+ I + + P G ++++GD + I +G +D Y N T
Sbjct: 44 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATS--- 100
Query: 538 SCRIGPGDFCGEELLTWALDPRPSVI 563
+G G GE L + PR + +
Sbjct: 101 ---VGEGGSFGELALIYGT-PRAATV 122
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD 524
KR + + + +V + + +D+ + + L+P +G +V +G+P +E I+ G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 525 SYTTNGGRTGFFNSCRIGPGDFCGE 549
F R+GP D+ GE
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGE 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
LF +D+ I + + P G ++++GD + I +G +D Y N T
Sbjct: 46 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATS--- 102
Query: 538 SCRIGPGDFCGEELLTWALDPRPSVI 563
+G G GE L + PR + +
Sbjct: 103 ---VGEGGSFGELALIYGT-PRAATV 124
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 450 EVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREG 509
E +L+ P D+R DI H+ + + P F + L A+ + C G + G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 510 DPVNEMLFIIRGHLD 524
+ V+ + F++ G L+
Sbjct: 66 ESVDSLCFVVSGSLE 80
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD-SYTTN 529
+++ R +F ++ + A+ ++L+P G + EG+P + + II G +
Sbjct: 6 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588
GR +GP D GE + DP P T + +I+EV A ++ D L+
Sbjct: 66 DGRENLLTI--MGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDALR 113
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD-SYTTN 529
+++ R +F ++ + A+ ++L+P G + EG+P + + II G +
Sbjct: 4 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588
GR +GP D GE + DP P T + +I+EV A ++ D L+
Sbjct: 64 DGRENLLTI--MGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDALR 111
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD-SYTTN 529
+++ R +F ++ + A+ ++L+P G + EG+P + + II G +
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588
GR +GP D GE + DP P T + +I+EV A ++ D L+
Sbjct: 63 DGRENLLTI--MGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDALR 110
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD-SYTTN 529
+++ R +F ++ + A+ ++L+P G + EG+P + + II G +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588
GR +GP D GE + DP P T + +I+EV A ++ D L+
Sbjct: 88 DGRENLLTI--MGPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDALR 135
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD-SYTTN 529
+++ R +F ++ + A+ ++L+P G + EG+P + + II G +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588
GR GP D GE + DP P T + +I+EV A ++ D L+
Sbjct: 88 DGRENLLTIX--GPSDMFGELSI---FDPGP------RTSSATTITEVRAVSMDRDALR 135
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLD 524
KR + + + +V + + +++ + + L+P +G +V +G+P ++ I G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 525 SYTTNGGRTGFFNSCRIGPGDFCGE 549
+ R+GP D+ GE
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGE 326
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 458 TDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLF 517
TD +R+ + C D++ LF +D + + + + L EG ++ +GD +
Sbjct: 136 TDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 191
Query: 518 IIRGHLDSYTTNGG 531
I RG D Y G
Sbjct: 192 IDRGTFDIYVKCDG 205
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 458 TDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLF 517
TD +R+ + C D++ LF +D + + + + L EG ++ +GD +
Sbjct: 136 TDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 191
Query: 518 IIRGHLDSYTTNGG 531
I RG D Y G
Sbjct: 192 IDRGTFDIYVKCDG 205
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 458 TDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLF 517
TD +R+ + C D++ LF +D + + + + L EG ++ +GD +
Sbjct: 25 TDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 80
Query: 518 IIRGHLDSYTTNGG 531
I RG D Y G
Sbjct: 81 IDRGTFDIYVKCDG 94
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 458 TDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLF 517
TD +R+ + C D++ LF +D + + + + L EG ++ +GD +
Sbjct: 35 TDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 90
Query: 518 IIRGHLDSYTTNGG 531
I RG D Y G
Sbjct: 91 IDRGTFDIYVKCDG 104
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 458 TDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLF 517
TD +R+ + C D++ LF +D + + + + L EG ++ +GD +
Sbjct: 29 TDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYV 84
Query: 518 IIRGHLDSYTTNGG 531
I RG D Y G
Sbjct: 85 IDRGTFDIYVKCDG 98
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
LF +D+ I + + P G ++++GD + I +G +D Y N T
Sbjct: 45 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATS--- 101
Query: 538 SCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK--FVASQFR 595
+G G GE L + PR + TVK+ + V+ + + D + + S R
Sbjct: 102 ---VGEGGSFGELALIYG-TPRAA--------TVKAKTNVKLWGIDRDSYRRILMGSTLR 149
Query: 596 R 596
+
Sbjct: 150 K 150
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 464 IKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHL 523
IK ++ ++ VP F + E +L + + L+ G +++R+G + I +G +
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 524 DSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRT 570
+ + +G GD+ GE+ L D R + ++ + T
Sbjct: 210 NVTREDSPNEDPVFLRTLGKGDWFGEKALQGE-DVRTANVIAAEAVT 255
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFN 537
LF +D+ I + + P G ++++GD + I +G +D Y N T
Sbjct: 52 LFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATS--- 108
Query: 538 SCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK--FVASQFR 595
+G G GE L + PR + TVK+ + V+ + + D + + S R
Sbjct: 109 ---VGEGGSFGELALIYG-TPRAA--------TVKAKTNVKLWGIDRDSYRRILMGSTLR 156
Query: 596 R 596
+
Sbjct: 157 K 157
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLT 553
L+ C G FL+ EG P+N + F S +GF S ++ ++++
Sbjct: 317 LRSPECPVGEFLINEGTPINNVYFAAGALFVS-------SGFDTSIKL--------DIIS 361
Query: 554 WALDPRPSVILPSSTRTVKSISEVEAFALRADD 586
RP++ + T V + EV F +DD
Sbjct: 362 DPESERPAIEFETPTFLVSNDDEVSQFCYVSDD 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,479,127
Number of Sequences: 62578
Number of extensions: 854217
Number of successful extensions: 2073
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2019
Number of HSP's gapped (non-prelim): 48
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)