Query 005422
Match_columns 697
No_of_seqs 584 out of 3305
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2E-117 4E-122 996.0 52.6 569 70-696 65-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 9.8E-67 2.1E-71 620.9 51.9 466 56-608 34-500 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.6E-62 3.5E-67 513.1 36.6 426 91-603 5-432 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 4.3E-63 9.4E-68 520.3 28.8 508 70-663 205-718 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.9E-55 4.1E-60 464.7 30.6 423 72-596 217-643 (815)
6 PRK09392 ftrB transcriptional 99.6 8.3E-15 1.8E-19 149.9 18.4 144 470-624 6-149 (236)
7 PRK11753 DNA-binding transcrip 99.5 7.9E-13 1.7E-17 132.7 18.8 120 480-609 6-126 (211)
8 KOG3713 Voltage-gated K+ chann 99.5 1.1E-12 2.5E-17 140.4 18.9 192 123-406 240-437 (477)
9 cd00038 CAP_ED effector domain 99.4 1.4E-12 3E-17 116.0 13.2 112 478-600 1-113 (115)
10 PRK11161 fumarate/nitrate redu 99.4 1.2E-11 2.6E-16 126.4 17.9 125 473-609 15-141 (235)
11 smart00100 cNMP Cyclic nucleot 99.4 9.8E-12 2.1E-16 111.1 14.5 116 478-602 1-117 (120)
12 COG0664 Crp cAMP-binding prote 99.4 1.8E-11 4E-16 122.1 17.9 127 474-611 3-130 (214)
13 PRK10402 DNA-binding transcrip 99.4 6.6E-12 1.4E-16 127.7 14.8 109 488-607 25-134 (226)
14 PF00520 Ion_trans: Ion transp 99.4 1.7E-12 3.7E-17 127.9 10.0 193 127-395 1-200 (200)
15 PF00027 cNMP_binding: Cyclic 99.4 4.9E-12 1.1E-16 108.4 10.8 89 497-596 2-91 (91)
16 KOG0614 cGMP-dependent protein 99.3 5.6E-12 1.2E-16 134.5 8.7 132 467-607 268-400 (732)
17 PRK09391 fixK transcriptional 99.3 5.9E-11 1.3E-15 121.0 14.0 110 488-611 32-142 (230)
18 PRK13918 CRP/FNR family transc 99.2 4.2E-10 9E-15 112.2 16.7 127 493-641 5-134 (202)
19 TIGR03697 NtcA_cyano global ni 99.2 2.5E-10 5.5E-15 112.8 15.0 99 502-609 1-100 (193)
20 PLN02868 acyl-CoA thioesterase 99.2 1.8E-10 4E-15 127.5 13.6 113 470-595 7-119 (413)
21 KOG0614 cGMP-dependent protein 99.2 4.5E-11 9.7E-16 127.7 7.3 118 465-597 148-265 (732)
22 COG2905 Predicted signal-trans 99.2 1.3E-09 2.8E-14 118.5 18.1 116 470-599 6-121 (610)
23 KOG1113 cAMP-dependent protein 99.1 8.4E-11 1.8E-15 120.9 8.5 120 470-604 121-240 (368)
24 KOG1419 Voltage-gated K+ chann 99.1 2.4E-09 5.1E-14 115.4 15.7 88 344-438 267-354 (654)
25 KOG1545 Voltage-gated shaker-l 99.0 4.5E-11 9.8E-16 122.0 -1.1 58 349-406 396-453 (507)
26 KOG1113 cAMP-dependent protein 98.9 6.3E-09 1.4E-13 107.2 8.7 119 465-597 234-352 (368)
27 PF07885 Ion_trans_2: Ion chan 98.9 2E-08 4.3E-13 84.4 10.2 55 346-400 24-78 (79)
28 KOG1420 Ca2+-activated K+ chan 98.7 2.2E-08 4.7E-13 107.7 7.5 136 344-487 286-426 (1103)
29 KOG4390 Voltage-gated A-type K 98.6 1.9E-08 4E-13 103.9 2.4 181 122-399 226-413 (632)
30 PF08412 Ion_trans_N: Ion tran 98.4 1.8E-07 3.9E-12 76.9 2.3 66 41-106 2-70 (77)
31 KOG2968 Predicted esterase of 98.2 1.5E-06 3.2E-11 98.7 6.1 113 486-609 500-613 (1158)
32 PRK10537 voltage-gated potassi 97.8 0.0003 6.4E-09 77.1 14.4 54 346-399 168-221 (393)
33 KOG3684 Ca2+-activated K+ chan 97.7 0.0023 5E-08 68.9 18.4 91 344-442 285-375 (489)
34 KOG2968 Predicted esterase of 97.7 0.00025 5.4E-09 81.2 11.7 113 490-606 111-224 (1158)
35 PF01007 IRK: Inward rectifier 97.6 0.00041 8.8E-09 74.2 10.8 60 345-404 83-144 (336)
36 PF04831 Popeye: Popeye protei 97.3 0.0068 1.5E-07 56.3 13.8 107 481-597 14-122 (153)
37 PRK11832 putative DNA-binding 97.3 0.0068 1.5E-07 59.9 14.3 96 486-595 14-110 (207)
38 KOG1418 Tandem pore domain K+ 97.0 0.0014 3E-08 72.7 7.4 60 347-406 116-175 (433)
39 KOG3542 cAMP-regulated guanine 96.3 0.01 2.2E-07 66.2 7.6 113 468-595 278-392 (1283)
40 KOG2302 T-type voltage-gated C 96.0 0.094 2E-06 61.2 13.4 91 67-182 1099-1200(1956)
41 KOG4404 Tandem pore domain K+ 95.6 0.079 1.7E-06 55.0 10.2 55 346-400 186-248 (350)
42 KOG3827 Inward rectifier K+ ch 95.1 0.13 2.8E-06 54.7 9.9 62 346-407 112-175 (400)
43 KOG4404 Tandem pore domain K+ 94.5 0.014 3.1E-07 60.4 0.9 47 346-392 80-126 (350)
44 PLN03223 Polycystin cation cha 93.6 16 0.00034 45.5 23.6 32 372-403 1395-1426(1634)
45 KOG3193 K+ channel subunit [In 91.2 0.5 1.1E-05 52.0 6.8 33 348-380 219-251 (1087)
46 KOG3542 cAMP-regulated guanine 90.9 0.34 7.3E-06 54.6 5.2 92 471-585 37-128 (1283)
47 KOG1418 Tandem pore domain K+ 88.6 0.12 2.6E-06 57.1 -0.4 49 345-393 241-297 (433)
48 KOG0498 K+-channel ERG and rel 80.0 22 0.00048 42.1 12.9 92 372-468 324-442 (727)
49 COG4709 Predicted membrane pro 79.3 9.4 0.0002 37.0 7.9 72 413-486 7-82 (195)
50 KOG3676 Ca2+-permeable cation 78.2 34 0.00075 40.3 13.5 73 359-432 601-680 (782)
51 KOG2301 Voltage-gated Ca2+ cha 73.9 25 0.00053 45.4 11.8 46 121-186 870-916 (1592)
52 PF07883 Cupin_2: Cupin domain 70.0 5.9 0.00013 31.5 3.6 45 497-548 3-48 (71)
53 PF08006 DUF1700: Protein of u 68.3 27 0.00058 34.0 8.5 55 412-468 6-64 (181)
54 PRK13290 ectC L-ectoine syntha 65.8 26 0.00056 32.0 7.3 69 496-583 39-107 (125)
55 KOG3614 Ca2+/Mg2+-permeable ca 65.2 2E+02 0.0044 36.3 16.3 33 165-197 852-884 (1381)
56 PF13314 DUF4083: Domain of un 63.3 36 0.00077 26.4 6.2 51 371-421 3-56 (58)
57 KOG2302 T-type voltage-gated C 62.3 3.7E+02 0.0081 33.0 20.5 58 84-149 80-140 (1956)
58 KOG2301 Voltage-gated Ca2+ cha 60.2 1.5E+02 0.0033 38.6 14.8 100 122-257 472-573 (1592)
59 PLN03192 Voltage-dependent pot 59.6 4E+02 0.0087 32.5 21.4 43 423-470 357-399 (823)
60 TIGR03037 anthran_nbaC 3-hydro 54.4 35 0.00076 32.5 6.2 63 506-586 43-105 (159)
61 PF14377 DUF4414: Domain of un 53.6 21 0.00045 31.7 4.4 45 423-467 51-105 (108)
62 PF00060 Lig_chan: Ligand-gate 53.2 17 0.00036 33.6 3.9 59 344-403 42-100 (148)
63 PF07697 7TMR-HDED: 7TM-HD ext 49.7 73 0.0016 31.6 8.3 58 455-513 147-207 (222)
64 PF05899 Cupin_3: Protein of u 48.4 24 0.00053 28.8 3.7 42 499-548 14-55 (74)
65 PRK13264 3-hydroxyanthranilate 43.5 59 0.0013 31.5 6.0 62 510-588 52-113 (177)
66 PF10011 DUF2254: Predicted me 41.6 1.1E+02 0.0024 33.5 8.6 61 344-404 98-158 (371)
67 smart00835 Cupin_1 Cupin. This 41.6 65 0.0014 29.9 6.0 53 494-548 32-86 (146)
68 PRK09108 type III secretion sy 39.1 90 0.002 33.9 7.3 69 368-436 174-242 (353)
69 COG1917 Uncharacterized conser 38.3 63 0.0014 29.3 5.2 50 494-550 45-95 (131)
70 COG0662 {ManC} Mannose-6-phosp 35.3 77 0.0017 28.8 5.2 48 493-547 37-85 (127)
71 PRK08156 type III secretion sy 34.4 1.2E+02 0.0026 33.0 7.3 66 371-436 170-235 (361)
72 PRK05702 flhB flagellar biosyn 32.2 1.4E+02 0.0031 32.4 7.5 67 370-436 181-247 (359)
73 PRK12721 secretion system appa 32.0 1.4E+02 0.003 32.5 7.2 67 371-437 175-241 (349)
74 PF01484 Col_cuticle_N: Nemato 30.7 2.3E+02 0.0049 21.1 6.7 42 375-416 8-49 (53)
75 TIGR00328 flhB flagellar biosy 30.4 1.6E+02 0.0035 31.9 7.5 66 371-436 175-240 (347)
76 PF12973 Cupin_7: ChrR Cupin-l 30.1 1.2E+02 0.0025 25.7 5.2 64 493-581 25-88 (91)
77 PRK12468 flhB flagellar biosyn 29.8 1.6E+02 0.0034 32.5 7.3 65 372-436 183-247 (386)
78 TIGR01404 FlhB_rel_III type II 29.7 1.7E+02 0.0036 31.7 7.4 66 372-437 175-240 (342)
79 PHA03029 hypothetical protein; 28.9 2.6E+02 0.0057 22.8 6.4 36 370-405 2-37 (92)
80 PF13623 SurA_N_2: SurA N-term 28.8 1.5E+02 0.0033 27.8 6.1 45 378-422 10-67 (145)
81 PRK04190 glucose-6-phosphate i 28.7 2E+02 0.0043 28.4 7.1 52 495-548 71-131 (191)
82 TIGR03404 bicupin_oxalic bicup 27.8 1.3E+02 0.0029 32.9 6.3 51 495-548 70-121 (367)
83 PRK13109 flhB flagellar biosyn 27.2 1.9E+02 0.004 31.6 7.3 66 371-436 184-249 (358)
84 PF14377 DUF4414: Domain of un 25.5 1.1E+02 0.0023 27.1 4.3 48 424-471 8-68 (108)
85 KOG1053 Glutamate-gated NMDA-t 25.0 1.1E+03 0.023 29.1 12.9 117 252-426 568-720 (1258)
86 COG1422 Predicted membrane pro 24.7 2.4E+02 0.0053 27.9 6.7 40 383-422 48-90 (201)
87 COG5559 Uncharacterized conser 24.5 66 0.0014 25.0 2.2 19 450-468 5-23 (65)
88 TIGR03404 bicupin_oxalic bicup 24.0 1.7E+02 0.0037 32.0 6.3 52 494-548 247-300 (367)
89 PF02037 SAP: SAP domain; Int 23.1 1.5E+02 0.0032 20.4 3.7 26 412-437 5-35 (35)
90 PRK06298 type III secretion sy 23.0 2.5E+02 0.0055 30.6 7.3 61 377-437 182-242 (356)
91 PF00190 Cupin_1: Cupin; Inte 22.9 3.1E+02 0.0067 25.2 7.1 54 495-549 37-96 (144)
92 PHA02909 hypothetical protein; 22.8 82 0.0018 24.1 2.4 41 358-401 14-54 (72)
93 KOG3609 Receptor-activated Ca2 22.6 8.8E+02 0.019 29.3 11.9 73 348-422 555-633 (822)
94 TIGR00870 trp transient-recept 22.4 1.4E+03 0.03 27.4 28.9 46 370-415 586-632 (743)
95 COG4792 EscU Type III secretor 22.3 4.9E+02 0.011 27.5 8.7 77 354-436 164-241 (349)
96 KOG1054 Glutamate-gated AMPA-t 22.2 90 0.0019 35.7 3.6 51 349-400 598-648 (897)
97 KOG4440 NMDA selective glutama 22.1 1.8E+02 0.0039 33.6 6.0 52 348-399 615-666 (993)
98 CHL00038 psbL photosystem II p 21.6 1.3E+02 0.0029 21.0 3.0 9 349-357 16-24 (38)
99 COG3837 Uncharacterized conser 21.1 1.2E+02 0.0027 28.7 3.8 48 497-551 47-96 (161)
100 PRK06771 hypothetical protein; 21.0 3.9E+02 0.0085 23.1 6.4 47 389-435 15-61 (93)
101 KOG1545 Voltage-gated shaker-l 20.8 5.9E+02 0.013 27.6 9.1 45 126-189 256-301 (507)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-117 Score=996.02 Aligned_cols=569 Identities=52% Similarity=0.874 Sum_probs=514.1
Q ss_pred ccceeECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccc-cceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEE
Q 005422 70 VKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVR-HEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAY 148 (697)
Q Consensus 70 ~~~~ii~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y 148 (697)
...+|+||+|+++..||++++++|+|+++++|++||||..+ ...| +|..+...++++|+++|+||++||+++|||||
T Consensus 65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 34679999999999999999999999999999999999997 5567 89999999999999999999999999999999
Q ss_pred EcCCCcccCCCeEeeChHHHHHHHhhhhHHHHhhhccCchhhhhheeccCCCCchhhh-hhHHHHHHHHHHhhhHHHHHh
Q 005422 149 VAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRN-TKNVLRFIIIFQYLPRLFLIF 227 (697)
Q Consensus 149 ~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~-~~~~Lr~i~l~q~l~Rl~ri~ 227 (697)
++++|+ ++|.||++||+||+++||++|++|++|+||+++|.++ ++.... ....|..+.++||||||.|++
T Consensus 143 v~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 143 VDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred ECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999964 7999999999999999999999999999999999887 233333 334778888899999999999
Q ss_pred HhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccc
Q 005422 228 PLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESW 307 (697)
Q Consensus 228 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W 307 (697)
|+++++.++.+++.+|||++++++|++|||++||.||+||+++.++++.||+++|- .+|...+++|++
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw---~~~l~~~~~~~~--------- 281 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATW---LGSLGRLLSCYN--------- 281 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc---ccccccccccCc---------
Confidence 99999999999999999999999999999999999999999999999999987532 111111333322
Q ss_pred cccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHH
Q 005422 308 FKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVL 387 (697)
Q Consensus 308 ~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 387 (697)
..|+||+|.++ .+|++|+|||++||||+|||+++|+|.+|++|+|++|++|+++
T Consensus 282 ---------------~~~~fg~~s~~-----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL 335 (727)
T KOG0498|consen 282 ---------------LSFTFGIYSLA-----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLL 335 (727)
T ss_pred ---------------ccccccchhHH-----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHH
Confidence 34678887664 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHH
Q 005422 388 FALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467 (697)
Q Consensus 388 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~ 467 (697)
||++||||++++|+++.|.++||.|++|+++||+||+||++||+||++|+||+|..++|+||+++|++||++||+||++|
T Consensus 336 ~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~h 415 (727)
T KOG0498|consen 336 FAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRH 415 (727)
T ss_pred HHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|++.. ...+++||+|
T Consensus 416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~--~~~L~~Gd~~ 493 (727)
T KOG0498|consen 416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV--VAILGPGDFF 493 (727)
T ss_pred HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE--EEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988885544 8999999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRR 627 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~ 627 (697)
||+.++|+++ .| +++||+|+|.|+++.|+++||++++++||++++++++|++++|+++|++|++|++|++|++
T Consensus 494 GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~ 566 (727)
T KOG0498|consen 494 GEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR 566 (727)
T ss_pred chHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence 9888888884 22 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC---CCCCCCCCCchhHHHHHHHHHHHhhcccCCCCCC---CccCCCCCCCCCCCCCC
Q 005422 628 YKKRKEAAELRAKENIPA---EPDSPQPPSGLSIYAARLSASTRRANKHSRSDSG---VVTTLQKPAEPDFSVDE 696 (697)
Q Consensus 628 ~~~r~~~~~~~~~eery~---~~~~~~~~l~~~i~~~~~a~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~ 696 (697)
+.+|+....+...++.-. +..+....+..+.+++++|+|+.+.++.+++... .+..++||.+|||+.++
T Consensus 567 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 567 HIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAE 641 (727)
T ss_pred HHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCccccc
Confidence 999998887776543322 4445556789999999999999998877644333 57788999999999654
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=9.8e-67 Score=620.89 Aligned_cols=466 Identities=20% Similarity=0.346 Sum_probs=385.2
Q ss_pred cccccc-ccccccccccceeECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHH
Q 005422 56 AKVLSR-VFSEDYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDA 134 (697)
Q Consensus 56 ~~~~~~-~~~~~~~~~~~~ii~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 134 (697)
++.++- .+.++.-..+++||+|.++++.+||.+++++++|++++.|+.++|... .....+.+++.++|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~----------~~~~~~~~~d~i~~~ 103 (823)
T PLN03192 34 LPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA----------SPKRGLEIADNVVDL 103 (823)
T ss_pred ccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC----------CCCCCeeeHHHHHHH
Confidence 344442 245555566789999999999999999999999999999999876311 112245678999999
Q ss_pred HHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhhhHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHH
Q 005422 135 FYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFI 214 (697)
Q Consensus 135 ~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i 214 (697)
+|++||+++|+|||++++ .|.+|.||++|++||+++||++|++|++|++.+..... .... .....++|+++
T Consensus 104 ~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~~~---~~~~~~~l~ll 174 (823)
T PLN03192 104 FFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GTVK---LNLSYSLLGLL 174 (823)
T ss_pred HHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CCcc---chHHHHHHHHH
Confidence 999999999999999986 58999999999999999999999999999987654321 1111 11122334433
Q ss_pred HHHHhhhHHHHHhHhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCcccc
Q 005422 215 IIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYF 294 (697)
Q Consensus 215 ~l~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~ 294 (697)
| +.|+.|+.+++..+.+...+ ...|...+..++..++++||+||+||+++...
T Consensus 175 r----l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~--------------------- 227 (823)
T PLN03192 175 R----FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY--------------------- 227 (823)
T ss_pred H----HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------
Confidence 3 34555555666655544332 22344444444455568999999999998410
Q ss_pred ccCCCCCCCcccccccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHH
Q 005422 295 DCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEI 374 (697)
Q Consensus 295 ~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~ 374 (697)
...+.+|+... ..+..+.+++.+|++|+||+++|||||||||++|.|..|+
T Consensus 228 ------~~~~~~Wi~~~-----------------------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~ 278 (823)
T PLN03192 228 ------PHQGKTWIGAV-----------------------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEM 278 (823)
T ss_pred ------CCCCCchHHHh-----------------------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchH
Confidence 02346784320 0112357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 005422 375 IFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLK 454 (697)
Q Consensus 375 ~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~ 454 (697)
+|++++|++|+++||++||+|++++.+.+.+.++|+++++.+++||+++++|++||+||++|++|+|.. .+.+++++++
T Consensus 279 i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~ 357 (823)
T PLN03192 279 IFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLID 357 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 5688999999
Q ss_pred cCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeee
Q 005422 455 GLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTG 534 (697)
Q Consensus 455 ~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~ 534 (697)
.||++||.+|..+++.+.++++++|++++++++.+++..++.+.|+|||.|+.+||.++++|||.+|.|+++..+++++.
T Consensus 358 ~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~ 437 (823)
T PLN03192 358 QLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKER 437 (823)
T ss_pred HcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777776
Q ss_pred eeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005422 535 FFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRF 608 (697)
Q Consensus 535 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~ 608 (697)
+ +..+++|++|||.+++ ...| ++++++|.++|+++.|++++|.++++++|+....++++..+.
T Consensus 438 ~--l~~l~~Gd~FGE~~~l---~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~ 500 (823)
T PLN03192 438 V--VGTLGCGDIFGEVGAL---CCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQH 500 (823)
T ss_pred e--eEEccCCCEecchHHh---cCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6 6899999999999984 3334 789999999999999999999999999999888777776653
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-62 Score=513.11 Aligned_cols=426 Identities=24% Similarity=0.381 Sum_probs=360.1
Q ss_pred HHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHH
Q 005422 91 VACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIAS 170 (697)
Q Consensus 91 i~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~ 170 (697)
+.++|++++.+..+.|+.+. ......|..+++++|++|++||++++||||++ +|.+|.|-.+..+
T Consensus 5 ~~vLYN~~~li~r~~F~di~--------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl~~ 69 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDIQ--------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKLRK 69 (536)
T ss_pred EehHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHHHH
Confidence 45788999999988887553 23456788999999999999999999999998 5999999999999
Q ss_pred HHhhh-hHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhHhHHHHHHhhhhhhhhhHHHHH
Q 005422 171 RYLKK-GFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAA 249 (697)
Q Consensus 171 ~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~ 249 (697)
||+.+ .|.+|++|++|++++.+|.. +. ...| +.||+|++|++..+.++..-.. ...+..+
T Consensus 70 hY~~s~~f~lD~l~liP~D~l~~~~~------~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~-~Pn~fri 130 (536)
T KOG0500|consen 70 HYVHSTQFKLDVLSLIPLDLLLFKDG------SA-----SLER-------LNRLLKIYRLFEFFDRTETRTT-YPNAFRI 130 (536)
T ss_pred HHHHhhhhhhhhhhhcchhHHhhcCC------cc-----hHHH-------HHHHHHHHHHHHHHHHhccccC-CchHHHH
Confidence 99998 99999999999999987532 11 1222 4577778888888877765322 2334446
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccccccccccccCCCCCCCCcccc
Q 005422 250 YNLVLFM-LASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFG 328 (697)
Q Consensus 250 ~~l~~~~-l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g 328 (697)
.+|+.+. ++.||.||++|++|... | .+.++|+-.. +
T Consensus 131 ~~lv~~~~ilfHWNaClYf~iS~~~--------------g-------------~~~d~wvY~~-i--------------- 167 (536)
T KOG0500|consen 131 SKLVHYCLILFHWNACLYFLISKAI--------------G-------------FTTDDWVYPK-I--------------- 167 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhHhc--------------C-------------ccccccccCC-c---------------
Confidence 7777766 57999999999999521 1 3345584321 1
Q ss_pred chhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 005422 329 IYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEE 408 (697)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e 408 (697)
.++........++..+|++|+||+..||||+|.- -+|.+..|.+|.|+-.++|+++||.++|++++++.++++...|
T Consensus 168 --~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~E 244 (536)
T KOG0500|consen 168 --NDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTE 244 (536)
T ss_pred --cCccccccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHH
Confidence 0111111234679999999999999999999964 4567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhHhcCCccCCcccHHHHH
Q 005422 409 WRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLD 488 (697)
Q Consensus 409 ~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~ 488 (697)
|+.+++.+++||++|++|..|+.||.+||.|.|.+.+..||+++++.||+.|+.+|+.+++.+.|+++++|+.+.+.++.
T Consensus 245 Fq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~ 324 (536)
T KOG0500|consen 245 FQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLV 324 (536)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcc
Q 005422 489 AICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSST 568 (697)
Q Consensus 489 ~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~ 568 (697)
++...++++.|.|||+|++.||.+.+||+|.+|.+++...+++.. ...+++|++|||.++++ ..+ .-+..+|+
T Consensus 325 elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g--~~~gNRRt 397 (536)
T KOG0500|consen 325 ELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKG--NKNGNRRT 397 (536)
T ss_pred HHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcC--cccCCcce
Confidence 999999999999999999999999999999999999987666543 57999999999999853 333 23455799
Q ss_pred eEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005422 569 RTVKSISEVEAFALRADDLKFVASQFRRLHSKQLR 603 (697)
Q Consensus 569 ~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~ 603 (697)
++++++..+.+++|+++|+.+++++||+-...+++
T Consensus 398 anvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 398 ANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred eeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999987665553
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-63 Score=520.30 Aligned_cols=508 Identities=20% Similarity=0.351 Sum_probs=406.3
Q ss_pred ccceeECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEE
Q 005422 70 VKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYV 149 (697)
Q Consensus 70 ~~~~ii~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~ 149 (697)
....||-.++.|+-.||++++++.+|++++.|+-++|..-. .....|.+++.++|++|++||+++|+|.|+
T Consensus 205 TpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~---------~~~vs~lvvDSiVDVIF~vDIvLNFHTTFV 275 (971)
T KOG0501|consen 205 TPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQ---------RNNVSWLVVDSIVDVIFFVDIVLNFHTTFV 275 (971)
T ss_pred CCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccc---------cCceeEEEecchhhhhhhhhhhhhcceeee
Confidence 34678889999999999999999999999999987764321 124456788999999999999999999999
Q ss_pred cCCCcccCCCeEeeChHHHHHHHhhhhHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhHh
Q 005422 150 APSSRVFGRGELVIDPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPL 229 (697)
Q Consensus 150 ~~~s~~~~~G~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l 229 (697)
.|- ||+|.||+.|+.+|+|+||+||++|++|++.+..+-..... +-.....|+ +.||+|+.|.
T Consensus 276 GPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~deg----I~SLFSaLK-------VVRLLRLGRV 338 (971)
T KOG0501|consen 276 GPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEG----IGSLFSALK-------VVRLLRLGRV 338 (971)
T ss_pred cCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccccc----HHHHHHHHH-------HHHHHHHHHH
Confidence 995 99999999999999999999999999999988775433322 223334454 4577777888
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccccc
Q 005422 230 SQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFK 309 (697)
Q Consensus 230 ~~~i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~ 309 (697)
.+++.++..+ -.+-.+..++.|++++||+||+||.|+..+-- +-.++. ...++|+-
T Consensus 339 aRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~-------------------~~~~n~-i~~dsWL~ 394 (971)
T KOG0501|consen 339 ARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR-------------------DEMDNT-IQPDSWLW 394 (971)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhee-------------------cccccc-cccchHHH
Confidence 8888877654 22334555667999999999999999853210 000011 34457732
Q ss_pred cccccccCCCCCC-CCccccchh-hccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHH
Q 005422 310 FSNITSLCDPNNV-SSYKFGIYA-DAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVL 387 (697)
Q Consensus 310 ~~~l~~~c~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 387 (697)
. +. +++ .+|+|..-. ..+ +...+--..|+.|+|+..+.|||||+|.+.|.|..|++|++.+|++|.++
T Consensus 395 k--La-----~~~~tpY~~~~s~~~~~---~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLL 464 (971)
T KOG0501|consen 395 K--LA-----NDIGTPYNYNLSNKGTL---VGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALL 464 (971)
T ss_pred H--HH-----hhcCCCceeccCCCcee---ecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHH
Confidence 1 10 111 445543100 001 11455667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHH
Q 005422 388 FALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467 (697)
Q Consensus 388 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~ 467 (697)
||.++|+|.+++|.++++...|.+.++.+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|.-.|+++|.||.-|
T Consensus 465 YAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVH 544 (971)
T KOG0501|consen 465 YATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVH 544 (971)
T ss_pred HHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
+..+.....|.|+-.++..+++++..++..+..|||.|++.||..|.++||++|.+++...++- ++++++||+|
T Consensus 545 LNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAILGKGDVF 618 (971)
T KOG0501|consen 545 LNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAILGKGDVF 618 (971)
T ss_pred cchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEEeecCccc
Confidence 9999999999999999999999999999999999999999999999999999999999865442 6899999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRR 627 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~ 627 (697)
|+.- |.-. .+..+.++|+|+|.|.+..|.++.+.++++-|..+++..-++..--| ++-.|
T Consensus 619 GD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~LTy-------------NLr~R 678 (971)
T KOG0501|consen 619 GDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTLTY-------------NLRHR 678 (971)
T ss_pred hhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceeeEe-------------eccce
Confidence 9874 3321 23347899999999999999999999999988877654433322222 23445
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC----CCCCCchhHHHHHH
Q 005422 628 YKKRKEAAELRAKENIPAEPDS----PQPPSGLSIYAARL 663 (697)
Q Consensus 628 ~~~r~~~~~~~~~eery~~~~~----~~~~l~~~i~~~~~ 663 (697)
..-|+++...+++|+|..+-.+ ..++.+.|-..+||
T Consensus 679 iiFRKvaDVKrEkE~~~krKNE~~L~lp~DHpvRklf~rf 718 (971)
T KOG0501|consen 679 IIFRKVADVKREKELRAKRKNEPKLTLPNDHPVRKLFQRF 718 (971)
T ss_pred eeeeehhhhhhhHHHHHhhcCCCCCCCCCCchHHHHHHHH
Confidence 6678888888888887663322 22344555555554
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-55 Score=464.71 Aligned_cols=423 Identities=23% Similarity=0.390 Sum_probs=360.8
Q ss_pred ceeECCCC-hhHHHHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhh-heeEEEE
Q 005422 72 KKILDPRG-PAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYI-RFRTAYV 149 (697)
Q Consensus 72 ~~ii~P~s-~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l-~f~t~y~ 149 (697)
...|||++ ++...|-.+..++..++++++|+...||.+... ....|.+.++++|++|++||++ +=|.-|+
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~d--------N~~~Wli~Dy~cDiIYllDmlf~q~Rl~fv 288 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTAD--------NIHYWLIADYICDIIYLLDMLFIQPRLQFV 288 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccc--------cchhhhhHHHHhhHHHHHHHhhhhhhheee
Confidence 46799999 999999999999999999999999999987522 2446788999999999999965 7777777
Q ss_pred cCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhH
Q 005422 150 APSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFP 228 (697)
Q Consensus 150 ~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~ 228 (697)
. .|.+|.|.+...+||+++ .|-+|++|++|+++++.++-. +-++| ++|++++-.
T Consensus 289 r-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~-----------~p~wR-------~~R~lK~~s 343 (815)
T KOG0499|consen 289 R-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF-----------NPMWR-------ANRMLKYTS 343 (815)
T ss_pred e-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc-----------chhhh-------hhhHHHHHH
Confidence 6 599999999999999998 999999999999998874321 22233 344444433
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccc
Q 005422 229 LSQQIINATGVVTETAWAGAAYNLVLFML-ASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESW 307 (697)
Q Consensus 229 l~~~i~~~~~~~~~~~~~~~~~~l~~~~l-~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W 307 (697)
++..-.....++ ..+++-.+..-..||| +.|+.+|+||..|..+ ..+.+.|
T Consensus 344 F~e~~~~Le~i~-s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq---------------------------glG~~rW 395 (815)
T KOG0499|consen 344 FFEFNHHLESIM-SKAYIYRVIRTTGYLLYILHINACVYYWASAYQ---------------------------GLGTTRW 395 (815)
T ss_pred HHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc---------------------------cccccee
Confidence 333322222222 2344445555666765 7999999999998532 1456778
Q ss_pred cccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHH
Q 005422 308 FKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVL 387 (697)
Q Consensus 308 ~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 387 (697)
+-+ +-...|++|+|||..|++|+| |+-.|++.+|++|..+--+.|++.
T Consensus 396 Vyd-------------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFv 443 (815)
T KOG0499|consen 396 VYD-------------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFV 443 (815)
T ss_pred EEc-------------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHH
Confidence 421 123579999999999999999 788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHH
Q 005422 388 FALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRH 467 (697)
Q Consensus 388 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~ 467 (697)
||.+||.|-.++...+.+.++||..|+++-.||+..+||.+.+.|||.+|+|.|..++..||.+++..||..|+.+++..
T Consensus 444 FslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~ 523 (815)
T KOG0499|consen 444 FSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAID 523 (815)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
.+...+.++.+|++++.+.+..++-+++.+.|-|||+|++.||.+.+||+|..|.|.|....+|.. + +..|++|++|
T Consensus 524 V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~-V--l~tL~~GsVF 600 (815)
T KOG0499|consen 524 VNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK-V--LVTLKAGSVF 600 (815)
T ss_pred eehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE-E--EEEeccccee
Confidence 999999999999999999999999999999999999999999999999999999999987655543 3 6899999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHH
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRR 596 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~ 596 (697)
||++++ +..+.. +||++|+|...|.+++|+++|+.+++..||+
T Consensus 601 GEISLL-aigG~n-----RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 601 GEISLL-AIGGGN-----RRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred eeeeee-eecCCC-----ccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 999984 333322 5999999999999999999999999999995
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.64 E-value=8.3e-15 Score=149.90 Aligned_cols=144 Identities=13% Similarity=0.194 Sum_probs=122.7
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.+.++.+++|..+++++++.++...+.+.|++|+.|+++||+++.+|+|.+|.|+++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457899999999999999999999999999999999999999999999999999998877777766 689999999999
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAA 624 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~ 624 (697)
.++ +...+ +.++++|+++|+++.+++++|.+++.++|.+....++...+.+...++.........+
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSS 149 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 986 34444 7899999999999999999999999999999988877766655554444443333333
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.51 E-value=7.9e-13 Score=132.68 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=103.1
Q ss_pred CcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCC
Q 005422 480 DQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDP 558 (697)
Q Consensus 480 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 558 (697)
+.++++.++.++..++.+.|++|++|+++||+++.+|+|++|.++++..+ +|++.+ +..+.+|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 56899999999999999999999999999999999999999999998754 567666 6899999999999874 22
Q ss_pred CCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 559 RPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 559 ~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
.+ .++.+++|.++|+++.+++++|.+++.++|++....++.....+
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l 126 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRL 126 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 21 26789999999999999999999999999998876665544433
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.1e-12 Score=140.41 Aligned_cols=192 Identities=21% Similarity=0.325 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCCCC
Q 005422 123 VILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNLRG 201 (697)
Q Consensus 123 ~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~ 201 (697)
-.+.+++.++-++|-+.++++|-.+ |+ ..+++|+ -=+||++|++||++=+.......
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~--- 297 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGG--- 297 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhcc---
Confidence 3578899999999999999999743 33 3467777 67999999999975433221111
Q ss_pred chhhhhhHHHHHHHHHHhhhHHHHHhHhHHHHHHhhhhhh--hh--hHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhhH
Q 005422 202 STMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVT--ET--AWAGAAYNLVLFM-LASHVLGACWYLLSIERQEA 276 (697)
Q Consensus 202 ~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~i~~~~~~~~--~~--~~~~~~~~l~~~~-l~~H~~~c~wyli~~~~~~~ 276 (697)
...-...++...+++++ +.|++|+++|-+. .+|.-+ .| +-+.-+-.|++|+ +.+-+++.+-|++-.++
T Consensus 298 ~~~~~l~~~~~vvrvlR-~lRI~RI~KLaRh---S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~--- 370 (477)
T KOG3713|consen 298 ESLKELENAGLVVRVLR-VLRILRIFKLARH---STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE--- 370 (477)
T ss_pred chHHHHhhhhhhHHHHH-HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Confidence 11111222222222221 3344444444332 233221 11 1112233444444 45677888877764211
Q ss_pred HHHhhhccCCCCCCccccccCCCCCCCcccccccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHH
Q 005422 277 CWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLK 356 (697)
Q Consensus 277 cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~ 356 (697)
.+..+ +.--.|+|||+.
T Consensus 371 --------------------------~~~~F-------------------------------------tSIPa~~WWaiV 387 (477)
T KOG3713|consen 371 --------------------------PDTKF-------------------------------------TSIPAGFWWAVV 387 (477)
T ss_pred --------------------------CCCCC-------------------------------------ccccchhheeeE
Confidence 01111 111248999999
Q ss_pred hcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 005422 357 NLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL 406 (697)
Q Consensus 357 tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 406 (697)
|||||||||..|.|...++++..+++.|++..|+-|..|-+-+.......
T Consensus 388 TMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 388 TMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred EEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 99999999999999999999999999999999998877766555444433
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.44 E-value=1.4e-12 Score=116.04 Aligned_cols=112 Identities=25% Similarity=0.575 Sum_probs=98.5
Q ss_pred cCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhc
Q 005422 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWAL 556 (697)
Q Consensus 478 ~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 556 (697)
+|..++++.+..++..++.+.+++|++|+.+|++.+.+|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999998754 455555 6799999999999874
Q ss_pred CCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHH
Q 005422 557 DPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600 (697)
Q Consensus 557 ~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~ 600 (697)
...+ +..+++|.++|+++.|+.++|.+++.++|.+..+
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 2233 6889999999999999999999999999977653
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=1.2e-11 Score=126.39 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=103.7
Q ss_pred hcCCccCCcccHHHHHHHHhcccc-eEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHh
Q 005422 473 VRRVPLFDQMDERMLDAICERLKP-ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEE 550 (697)
Q Consensus 473 l~~v~~F~~l~~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 550 (697)
+++.+.|..+++++++.+....+. ..|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.||++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455556667999999999988864 679999999999999999999999999999854 577766 6788999999986
Q ss_pred hHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 551 LLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 551 ~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
.+ ... + ++.+++|+++|+++.|++++|.+++.++|.+....++......
T Consensus 93 ~~---~~~-~------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~ 141 (235)
T PRK11161 93 AI---GSG-Q------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEI 141 (235)
T ss_pred cc---cCC-C------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 54 222 1 3568999999999999999999999999998877766655433
No 11
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.38 E-value=9.8e-12 Score=111.10 Aligned_cols=116 Identities=24% Similarity=0.423 Sum_probs=99.1
Q ss_pred cCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhc
Q 005422 478 LFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWAL 556 (697)
Q Consensus 478 ~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 556 (697)
+|.+++++.++.++..++.+.+++|++|+++|++++++|+|.+|.++++..+ +|++.. +..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc-cC
Confidence 4788999999999999999999999999999999999999999999998764 455555 6899999999999874 11
Q ss_pred CCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHH
Q 005422 557 DPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQL 602 (697)
Q Consensus 557 ~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l 602 (697)
.+.+ ...+++|.++|+++.++.+++.....+++.+..+.+
T Consensus 78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 78 SRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred CCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 2222 678999999999999999999999999887655443
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.38 E-value=1.8e-11 Score=122.13 Aligned_cols=127 Identities=23% Similarity=0.411 Sum_probs=106.8
Q ss_pred cCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhH
Q 005422 474 RRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELL 552 (697)
Q Consensus 474 ~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 552 (697)
...+.|..++++....+......+.+++|++|+++||+++.+|+|.+|.++++... +|++.+ +.++.+|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34566777788888888888899999999999999999999999999999998854 567776 679999999999998
Q ss_pred hhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 553 TWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 553 ~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
+ ...+ ++.+++|+++|+++.+++++|.+++.+.|.+...+++...+.+..
T Consensus 81 ~---~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~ 130 (214)
T COG0664 81 L---GGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQ 130 (214)
T ss_pred h---cCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 4 3223 789999999999999999999998877888887777666654444
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.38 E-value=6.6e-12 Score=127.66 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=93.5
Q ss_pred HHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCC
Q 005422 488 DAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPS 566 (697)
Q Consensus 488 ~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~ 566 (697)
..+....+.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +.++.||++||+.+++ ...+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~~~------ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DKDH------ 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cCCC------
Confidence 457778889999999999999999999999999999998754 677766 6799999999998863 3333
Q ss_pred cceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 567 STRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 567 s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
++.+++|+++|+++.+++++|.+++.++|.+....++...+
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~ 134 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH 134 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999888766655444
No 14
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.37 E-value=1.7e-12 Score=127.88 Aligned_cols=193 Identities=18% Similarity=0.310 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCCCCchhh
Q 005422 127 IIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNLRGSTMR 205 (697)
Q Consensus 127 ~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~ 205 (697)
+++.+.+++|.+|+++++.+... . +++|+++ |.++|+++++|....+.....+..+.....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLL 62 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhcccccccccccccccccccccccccceE
Confidence 46789999999999999985421 1 6789998 788999999998655443221110000122
Q ss_pred hhhHHHHHHHHHHhhhHHHHHhHhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccC
Q 005422 206 NTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSE 285 (697)
Q Consensus 206 ~~~~~Lr~i~l~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~ 285 (697)
...+++|+ .|++|+.+..+.+.+..+.... ........++++.+..|+.||+++.+.......|+
T Consensus 63 ~~~~~l~~-------~R~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~------- 127 (200)
T PF00520_consen 63 RIFRLLRL-------LRLLRLLRRFRSLRRLLRALIR-SFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC------- 127 (200)
T ss_dssp HHHHHHHH-------HHHHHHHHTTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred EEEEeecc-------cccccccccccccccccccccc-ccccccccccccccccccccchhheeccccccccc-------
Confidence 23333332 2333443333333333222221 12223344455667899999999998753322221
Q ss_pred CCCCCccccccCCCCCCCcccccccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCC
Q 005422 286 KPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNL 365 (697)
Q Consensus 286 ~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd 365 (697)
+. . + - + .++....+..+.|..|+||.++++++.|+|+
T Consensus 128 ----~~------------~--~-----~-------~-------------~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~ 164 (200)
T PF00520_consen 128 ----DP------------T--W-----D-------S-------------ENDIYGYENFDSFGESLYWLFQTMTGEGWGD 164 (200)
T ss_dssp ---------------------S-----S------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCC
T ss_pred ----cc------------c--c-----c-------c-------------ccccccccccccccccccccccccccCCccc
Confidence 00 0 0 0 0 0001234556789999999999999999999
Q ss_pred cccC-----chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 005422 366 ATST-----YVGEIIFA-IIIATLGLVLFALLIGNM 395 (697)
Q Consensus 366 ~~~~-----~~~E~~f~-i~i~i~G~~lfa~lig~~ 395 (697)
..+. +..+.++. +++.+.+.++++.+||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 165 VMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9987 78899988 777777789999999986
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=4.9e-12 Score=108.39 Aligned_cols=89 Identities=25% Similarity=0.419 Sum_probs=78.4
Q ss_pred eEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCe-eeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc
Q 005422 497 ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGR-TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS 575 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~-~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t 575 (697)
+.|++|++|+++|++++++|+|++|.++++..+.+. ..+ +..+.+|++||+.+++.. .+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~---~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLTG---KP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHHT---SB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecCC---Cc------cEEEEEEcc
Confidence 679999999999999999999999999998866544 444 679999999999988533 23 789999999
Q ss_pred cEEEEEecHHHHHHHHHHhHH
Q 005422 576 EVEAFALRADDLKFVASQFRR 596 (697)
Q Consensus 576 ~~el~~L~~~df~~l~~~~p~ 596 (697)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999984
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.29 E-value=5.6e-12 Score=134.47 Aligned_cols=132 Identities=22% Similarity=0.415 Sum_probs=113.1
Q ss_pred HHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCe
Q 005422 467 HICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDF 546 (697)
Q Consensus 467 ~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 546 (697)
..+.++|+.+|+|++++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.++-..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34678899999999999999999999999999999999999999999999999999999886665444344789999999
Q ss_pred ecHhhHhhhcCCCCCCCCCCcceEEEEccc-EEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 547 CGEELLTWALDPRPSVILPSSTRTVKSISE-VEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 547 fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~-~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
|||-+++ ... .|++++.|.++ ++++.|+++.|.+++....++..+......|
T Consensus 348 FGE~al~---~ed------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 348 FGERALL---GED------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred hhHHHhh---ccC------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 9999984 222 37999999987 9999999999999999988887655544444
No 17
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.26 E-value=5.9e-11 Score=121.00 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=92.3
Q ss_pred HHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCC
Q 005422 488 DAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPS 566 (697)
Q Consensus 488 ~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~ 566 (697)
..++.....+.|++|++|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.. ..+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~~~------ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------GST------ 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------CCc------
Confidence 345666788999999999999999999999999999998754 566666 67899999999532 122
Q ss_pred cceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 567 STRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 567 s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
+.++++|+++|+++.+++++|.+++.++|++....++...+.+..
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~ 142 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRH 142 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998888776664443
No 18
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.21 E-value=4.2e-10 Score=112.16 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=91.9
Q ss_pred cccceEecCCCEEEccCC--CcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcce
Q 005422 493 RLKPALCTEGTFLVREGD--PVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTR 569 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd--~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~ 569 (697)
.++...|++|++|+++|| +++.+|+|++|.|+++.. .+|++.+ +..+.|||+||+..++ . .+ ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-CC------CCc
Confidence 467788999999999999 779999999999999885 4677777 6899999999997542 2 22 678
Q ss_pred EEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005422 570 TVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEAAELRAKE 641 (697)
Q Consensus 570 tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~~e 641 (697)
+++|+++|+++.|++++| +|++...+++...+...+..+... .........|.....++-++
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~----~l~~~~~~~Rla~~Ll~l~~ 134 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYESIY----RLVGQRLKNRIAAALLELSD 134 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHHHH----HHHhCchHHHHHHHHHHHHH
Confidence 999999999999999987 466666666666554444333222 22333344455544444333
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.21 E-value=2.5e-10 Score=112.75 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=82.6
Q ss_pred CCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEE
Q 005422 502 GTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAF 580 (697)
Q Consensus 502 ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~ 580 (697)
|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+.||++||+.+++ ...+ ..+..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 789999999999999999999999874 4577766 6899999999998763 3222 0135789999999999
Q ss_pred EecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 581 ALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 581 ~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
.+++++|++++.++|++....++...+..
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~~l 100 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSSRI 100 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 99999999999999999888877665533
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.18 E-value=1.8e-10 Score=127.52 Aligned_cols=113 Identities=20% Similarity=0.374 Sum_probs=98.2
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.++++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+++++.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999998866444544 678999999997
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhH
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFR 595 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p 595 (697)
. + ...+ +..+++|.++|+++.|++++|..+...++
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 2232 78999999999999999999988876554
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.16 E-value=4.5e-11 Score=127.72 Aligned_cols=118 Identities=16% Similarity=0.402 Sum_probs=104.5
Q ss_pred HHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCC
Q 005422 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPG 544 (697)
Q Consensus 465 ~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 544 (697)
..++..+.+....++++++.+++.++..+|.++.|.+|++|++|||+++++|++.+|+++|.. +|+ . ++.+++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~--l--l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK--L--LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe--e--eeccCCc
Confidence 345667788888999999999999999999999999999999999999999999999999974 333 2 7899999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHH
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRL 597 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l 597 (697)
..|||.+++++.. |++||+|+++|.+|+|+++-|+.++...-.-
T Consensus 222 tvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~ 265 (732)
T KOG0614|consen 222 TVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLE 265 (732)
T ss_pred hhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999977654 8999999999999999999999998775533
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-09 Score=118.52 Aligned_cols=116 Identities=17% Similarity=0.300 Sum_probs=102.4
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.+++.+.|.|+.++++++++|...+....|.+||.|+..|.|.+++|+|.+|.|++...++. + +..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 46788999999999999999999999999999999999999999999999999999754433 3 689999999999
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHH
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHS 599 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~ 599 (697)
.+++.... ....+.|.+|+.+|.|+++.|.+++.++|+++.
T Consensus 81 ~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 98853332 356788889999999999999999999998764
No 23
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=8.4e-11 Score=120.88 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=102.8
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.+.+++.-+|++++++.+..+.+.|..+.+++|+.|++|||.++.+|+|.+|.++++.. |. .+..+.||..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhh
Confidence 56778889999999999999999999999999999999999999999999999999875 22 1578999999999
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRH 604 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~ 604 (697)
.++.++ .| +.+|+.|.+++.+|.|++..|..++-.......+++..
T Consensus 195 lALmyn---~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~ 240 (368)
T KOG1113|consen 195 LALMYN---PP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEP 240 (368)
T ss_pred hHhhhC---CC------cccceeeccccceEEEeeceeEEEeeccchhhhhhhhh
Confidence 999543 23 89999999999999999999998876655444444433
No 24
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.4e-09 Score=115.37 Aligned_cols=88 Identities=24% Similarity=0.410 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhC
Q 005422 344 FNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHR 423 (697)
Q Consensus 344 ~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 423 (697)
+.-|-.++|||+.|++|+||||++|.+-..++.+....++|+.+||.--|.+++=+.-.- +|+.|+ +++-+.|
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHhhc
Confidence 457888999999999999999999999999999999999999999998888776553322 223333 3777888
Q ss_pred CCChhHHHHHHHHHH
Q 005422 424 QLPPELRQSVRKYDQ 438 (697)
Q Consensus 424 ~lp~~L~~rVr~y~~ 438 (697)
+.-..|.+-..|||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888889998888874
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.99 E-value=4.5e-11 Score=122.04 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=48.6
Q ss_pred HHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 005422 349 YCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL 406 (697)
Q Consensus 349 ~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 406 (697)
.+||||+.|||||||||..|.+.+.++...+++|.|++-.|+-+..+.+-+.....|.
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrE 453 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 453 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeecc
Confidence 3899999999999999999999999999999999999998887766655444443333
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=6.3e-09 Score=107.24 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=105.0
Q ss_pred HHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCC
Q 005422 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPG 544 (697)
Q Consensus 465 ~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 544 (697)
++.++.++|+.+|++..++..+...++..+.++.|++|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 3567889999999999999999999999999999999999999999999999999999999765544 2 24 99999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHH
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRL 597 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l 597 (697)
|+|||.+++ ...| +.++|.|.++..+..++++.|+.++.-.-++
T Consensus 309 dyfge~al~---~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 309 DYFGELALL---KNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred hhcchHHHH---hhch------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 999999984 4444 7899999999999999999999999875544
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.86 E-value=2e-08 Score=84.37 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQ 400 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 400 (697)
.|..++||+..++||+||||+.|.+..+++++++.+++|+.++++.++.+.+.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999999999999998875
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.72 E-value=2.2e-08 Score=107.70 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhC
Q 005422 344 FNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHR 423 (697)
Q Consensus 344 ~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 423 (697)
.-.|-.|+|+-+.||+||||||+..++...++|.++..+.|+.+||--+..+..++.+..+---||...-. =+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeE
Confidence 34688899999999999999999999999999999999999999999999999999877654444432100 0000
Q ss_pred CCCh-hHHHHHHHHHHHHHHHhc-CCC-HHHHHhcCChhHHHHHHHHHHHhHhcCCccCCc--ccHHHH
Q 005422 424 QLPP-ELRQSVRKYDQYKWVATR-GVD-EEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQ--MDERML 487 (697)
Q Consensus 424 ~lp~-~L~~rVr~y~~y~w~~~~-~~~-e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~--l~~~~l 487 (697)
-+=. -.-+.|-.|++---.+.+ .+| |--+|...||+|--| -++..-..++.+|++ |++-.+
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl 426 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDL 426 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhh
Confidence 0000 113344444433223333 244 446778899988665 234444567788864 444443
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.9e-08 Score=103.90 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCCC
Q 005422 122 EVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNLR 200 (697)
Q Consensus 122 ~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~ 200 (697)
...+..+++.+-++|-.+.++++..+ |+ ..|++|+ --+||++|++|+..-+ ....+.+
T Consensus 226 ~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYigL--v~t~N~D 284 (632)
T KOG4390|consen 226 PVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYIGL--VMTDNED 284 (632)
T ss_pred ceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhheEE--EecCCcc
Confidence 34455666666677777777776543 22 3478888 7899999999985432 2334445
Q ss_pred CchhhhhhHHHHHHHHHHhhhHHHHHhHhHHH--HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH
Q 005422 201 GSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQ--IINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACW 278 (697)
Q Consensus 201 ~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~--i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw 278 (697)
.|..+.+.+++|++ ||++..+. =.+..|+-.+.-..-.-+.|+...+++-++|.++|+.-.
T Consensus 285 VSGaFVTLRVFRVF----------RIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK------- 347 (632)
T KOG4390|consen 285 VSGAFVTLRVFRVF----------RIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK------- 347 (632)
T ss_pred ccceeEEEEeeeee----------eeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc-------
Confidence 66666666655433 33332221 123334433332222334445455567777887777421
Q ss_pred HhhhccCCCCCCccccccCCCCCCCcccccccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhc
Q 005422 279 RSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNL 358 (697)
Q Consensus 279 ~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tl 358 (697)
| .+ .+-+...-.+||+.+.||
T Consensus 348 ---------g-------------~~-------------------------------------at~FTsIPaaFWYTIVTm 368 (632)
T KOG4390|consen 348 ---------G-------------SS-------------------------------------ATKFTSIPAAFWYTIVTM 368 (632)
T ss_pred ---------c-------------cc-------------------------------------ccccccCcHhHhhheeee
Confidence 0 00 011112235899999999
Q ss_pred ccccCCCcccCchhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 005422 359 SSVGQNLATSTYVGEIIFAIIIATLGLVLFALL----IGNMQTYL 399 (697)
Q Consensus 359 stvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~l----ig~~~~~l 399 (697)
||+||||..|.+...++|..++.+.|+++.|+- ++|.+.+.
T Consensus 369 TTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 369 TTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred eeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 999999999999999999999999999998874 45555543
No 30
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.37 E-value=1.8e-07 Score=76.89 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=52.6
Q ss_pred CcccccCCCCccccccccccccccc---ccccccceeECCCChhHHHHHHHHHHHHHHHHHhhhhhccc
Q 005422 41 VPEKEVSGKPVKSLKAKVLSRVFSE---DYERVKKKILDPRGPAIRRWNKIFLVACLVSLFVDPLFFYL 106 (697)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ii~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~ 106 (697)
..+.+++|.++.|.+..+..+++.. .+.....+||||.|+|+.+||.+++++++++++++|+.+.|
T Consensus 2 ~~~~~~p~~nk~sl~~f~S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 2 FSSLLQPGDNKFSLRVFGSKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred cHHhhccccCHHHHHHHccHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 3456778888888887777766532 23344478999999999999999999999999999998765
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.22 E-value=1.5e-06 Score=98.71 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=96.2
Q ss_pred HHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCC
Q 005422 486 MLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIL 564 (697)
Q Consensus 486 ~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 564 (697)
++..+-..+....+.+|+.++++||..|++|+|+.|+++.... .+|+..+ +..++.||.+|+.+. +..++
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~---- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP---- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC----
Confidence 4455556678889999999999999999999999999998764 4555546 679999999999988 44444
Q ss_pred CCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 565 PSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 565 ~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
+..|+.|+-++++..||..-|..+..+||.+..++.+...+.+
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999888877777665
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.81 E-value=0.0003 Score=77.12 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYL 399 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 399 (697)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999998887644
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.0023 Score=68.86 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhC
Q 005422 344 FNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHR 423 (697)
Q Consensus 344 ~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 423 (697)
...|..++|....|..++||||+.|.|...+..+++..++|..+.|.+++.++.-+.- ..--+.+++||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeL--------t~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLEL--------TKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999998865532 22234567777777
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 005422 424 QLPPELRQSVRKYDQYKWV 442 (697)
Q Consensus 424 ~lp~~L~~rVr~y~~y~w~ 442 (697)
+|-+++++-..+=++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666665
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.70 E-value=0.00025 Score=81.25 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=91.6
Q ss_pred HHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcc
Q 005422 490 ICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSST 568 (697)
Q Consensus 490 l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~ 568 (697)
++.+++...+..|++|++.|++.+.+|.+.+|.+++...+ +|++.. +....+|+.|-....+.+.-| ......++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiLd~l~--~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSILDSLP--GFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHHHhcc--CCCcccce
Confidence 3477888899999999999999999999999999998755 567766 679999988887765533322 22234578
Q ss_pred eEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005422 569 RTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKF 606 (697)
Q Consensus 569 ~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~ 606 (697)
..++|.++|.+..++...|..+...||+-..+.+|-.+
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 89999999999999999999999999987766666544
No 35
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.58 E-value=0.00041 Score=74.20 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcccccCCC--cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 345 NKYFYCLWWGLKNLSSVGQNL--ATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 345 ~~Y~~slywal~tlstvG~gd--~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
..+..+|++++.|++|+|||. ++|....-.++.++-+++|+++.|+++|.+-+=++.-.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 357789999999999999998 678878888888999999999999999999887765544
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.32 E-value=0.0068 Score=56.27 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=82.5
Q ss_pred cccHHHHHHHHhc-ccceEecCCCEEEccCC-CcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCC
Q 005422 481 QMDERMLDAICER-LKPALCTEGTFLVREGD-PVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDP 558 (697)
Q Consensus 481 ~l~~~~l~~l~~~-l~~~~~~kge~I~~eGd-~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 558 (697)
+.+......|+.+ .+.....+|+.-.-||. +.|.+-++++|+++|.. +|+ + +..+.|.+|....+... ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~--f--LH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGR--F--LHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCE--e--eEeecccccccChhhhc-ccc
Confidence 3588888888888 56678999999988884 67899999999999964 333 2 67788888877666521 211
Q ss_pred CCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHH
Q 005422 559 RPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRL 597 (697)
Q Consensus 559 ~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l 597 (697)
. ....-..|+.|.++|..+..+++.+..++...|-+
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 1 11235789999999999999999999999998844
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.28 E-value=0.0068 Score=59.89 Aligned_cols=96 Identities=8% Similarity=-0.037 Sum_probs=72.8
Q ss_pred HHHHHHhcccceEecCCCEE-EccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCC
Q 005422 486 MLDAICERLKPALCTEGTFL-VREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIL 564 (697)
Q Consensus 486 ~l~~l~~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 564 (697)
..+.+....++..+++|..+ ..+....+.++++.+|.|.+. ..++ -. +....+..+||-... ..+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC----
Confidence 44566667788899999997 544444468999999999994 3333 22 578889999997654 33322
Q ss_pred CCcceEEEEcccEEEEEecHHHHHHHHHHhH
Q 005422 565 PSSTRTVKSISEVEAFALRADDLKFVASQFR 595 (697)
Q Consensus 565 ~~s~~tv~A~t~~el~~L~~~df~~l~~~~p 595 (697)
..+.++|.++|+++.++.+++.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 35789999999999999999999999854
No 38
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0014 Score=72.66 Aligned_cols=60 Identities=17% Similarity=0.400 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL 406 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 406 (697)
+..++|++.+++||+|||+++|.|...++++|+..++|+-++..++++++..+...-.+.
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999999887655443
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.29 E-value=0.01 Score=66.16 Aligned_cols=113 Identities=16% Similarity=0.313 Sum_probs=88.4
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceE-ecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCe
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPAL-CTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDF 546 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 546 (697)
..++++.+.|.|.+|+-...+++|..|.... -.+|.+|+..|+.-|..++|+.|+|++...+|.+ ..+.-|+.
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 3467888999999999999999999887655 5789999999999999999999999999888765 46778999
Q ss_pred ecHhhHhhhcCCCCCCCCCCcceEE-EEcccEEEEEecHHHHHHHHHHhH
Q 005422 547 CGEELLTWALDPRPSVILPSSTRTV-KSISEVEAFALRADDLKFVASQFR 595 (697)
Q Consensus 547 fGe~~l~~~l~~~~~~~~~~s~~tv-~A~t~~el~~L~~~df~~l~~~~p 595 (697)
||...- .+.+. ..--+ .-+.||+..+|...|+-.++.+-.
T Consensus 352 FG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 995431 11110 11112 346899999999999999887643
No 40
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.98 E-value=0.094 Score=61.18 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred cccccceeECCCChhHHHH---------HHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHH
Q 005422 67 YERVKKKILDPRGPAIRRW---------NKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYI 137 (697)
Q Consensus 67 ~~~~~~~ii~P~s~~~~~W---------~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~ 137 (697)
++.|.+.+|.|+++|+..- |.+++++++++++.+.+.- |.++. ...-.+.+++-++|+.++|+
T Consensus 1099 r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer--p~i~~------~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1099 RELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER--PAIVE------GSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc--ccccc------CcceEEEEEecchHHHHHHH
Confidence 4566788999999998654 4445555556665555431 11110 01112234455688899999
Q ss_pred HHHhhhee-EEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhh
Q 005422 138 IQIYIRFR-TAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFV 182 (697)
Q Consensus 138 iDi~l~f~-t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDll 182 (697)
+.+.++-. .|.+- || ..|+++ |-.+|.+
T Consensus 1171 ~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 99998865 45332 33 369987 8777754
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.079 Score=54.99 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcccccCCCcccCch-------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYV-------GEI-IFAIIIATLGLVLFALLIGNMQTYLQ 400 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~-------~E~-~f~i~i~i~G~~lfa~lig~~~~~l~ 400 (697)
.|+.|+|+.+.|+||+|+||..+... .++ .++.+.+++|+.+++.++..+.--+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999876543 233 46667777898888877766554443
No 42
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.13 Score=54.71 Aligned_cols=62 Identities=13% Similarity=0.355 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcccccCCCcc--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLAT--STYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLE 407 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~--~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~ 407 (697)
.+..+|-|++-|=+|+|||--. ..-+.-++..++-+|+|+++-|+++|.+-.-+..-.+|.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAe 175 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAE 175 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 3456778889999999999754 3345556667778899999999999998876655544433
No 43
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.014 Score=60.36 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLI 392 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~li 392 (697)
++.-||||+.+.+||+|||-.+|.|.+.++|+|+-.++|+-+--..+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 55669999999999999999999999999999999999865544433
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=93.56 E-value=16 Score=45.53 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005422 372 GEIIFAIIIATLGLVLFALLIGNMQTYLQSTT 403 (697)
Q Consensus 372 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 403 (697)
+-..|..+++++..++.-++|+.|...++...
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888887776543
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.17 E-value=0.5 Score=52.04 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcccccCCCcccCchhHHHHHHHH
Q 005422 348 FYCLWWGLKNLSSVGQNLATSTYVGEIIFAIII 380 (697)
Q Consensus 348 ~~slywal~tlstvG~gd~~~~~~~E~~f~i~i 380 (697)
+.|+|+.+.|.+||||||..|..-.-.+..+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~ 251 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVIL 251 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHH
Confidence 457889999999999999999875555544433
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.86 E-value=0.34 Score=54.61 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=74.3
Q ss_pred hHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHh
Q 005422 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEE 550 (697)
Q Consensus 471 ~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 550 (697)
..|.+...|.++-...+.++|.......++...++++.||.+.+.|++++|.|-+. | ..+-|...||--
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g-------qi~mp~~~fgkr 105 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G-------QIYMPYGCFGKR 105 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-------ceecCccccccc
Confidence 45677888999999999999999999999999999999999999999999998763 2 134455577754
Q ss_pred hHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHH
Q 005422 551 LLTWALDPRPSVILPSSTRTVKSISEVEAFALRAD 585 (697)
Q Consensus 551 ~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~ 585 (697)
. ++ .|+.++-.++++|..+++..
T Consensus 106 ~------g~------~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 106 T------GQ------NRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred c------cc------ccccceeeecccceeeeecC
Confidence 2 11 17888899999999998543
No 47
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=88.55 E-value=0.12 Score=57.10 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcccccCCCcccCchhHH--------HHHHHHHHHHHHHHHHHHH
Q 005422 345 NKYFYCLWWGLKNLSSVGQNLATSTYVGEI--------IFAIIIATLGLVLFALLIG 393 (697)
Q Consensus 345 ~~Y~~slywal~tlstvG~gd~~~~~~~E~--------~f~i~i~i~G~~lfa~lig 393 (697)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 367889999999999999999999987755 5777888888888888773
No 48
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.02 E-value=22 Score=42.13 Aligned_cols=92 Identities=17% Similarity=0.257 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HhHHHHHHH-------HHHHHHHHHh--------------CC
Q 005422 372 GEIIFAIIIATLGLVLFALLIGNMQTYLQSTT------IRLEEWRIK-------RTDTEQWMHH--------------RQ 424 (697)
Q Consensus 372 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~------~~~~e~~~k-------~~~~~~~m~~--------------~~ 424 (697)
.-++++++-+++...+++-+-..+|+.-.... ...++|..+ ++.+.+|+.+ ++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~ 403 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQS 403 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHh
Confidence 34566777777777788877777776544332 223333221 2244444444 47
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHH
Q 005422 425 LPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHI 468 (697)
Q Consensus 425 lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l 468 (697)
||++||..|.+|+-+.-.+ .-.+++..++.+-..|...+
T Consensus 404 LP~~LR~dI~~hL~~~lv~-----~vpLF~~md~~~L~al~~rl 442 (727)
T KOG0498|consen 404 LPKDLRRDIKRHLCLDLVR-----KVPLFAGMDDGLLDALCSRL 442 (727)
T ss_pred CCHHHHHHHHHHHhHHHHh-----hCchhhcCCHHHHHHHHHHh
Confidence 9999999999998776543 33455666666666555544
No 49
>COG4709 Predicted membrane protein [Function unknown]
Probab=79.27 E-value=9.4 Score=37.00 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh--cCCCHHHHHhcC--ChhHHHHHHHHHHHhHhcCCccCCcccHHH
Q 005422 413 RTDTEQWMHHRQLPPELRQSVRKYDQYKWVAT--RGVDEEVLLKGL--PTDLRRDIKRHICLDLVRRVPLFDQMDERM 486 (697)
Q Consensus 413 ~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~--~~~~e~~il~~L--p~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~ 486 (697)
++++++|+ +.+|++.+..+..||+-.+.+. .|.+|+++..+| |+++-.|+..+.-.+-.+.-|-+.+.+...
T Consensus 7 L~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 7 LNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 56777887 4899999999999888777654 578899999998 778888888777666666666666655433
No 50
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.24 E-value=34 Score=40.33 Aligned_cols=73 Identities=23% Similarity=0.433 Sum_probs=55.2
Q ss_pred ccccCCCcccCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHHHHHhCCCChhHHH
Q 005422 359 SSVGQNLATSTY------VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL-EEWRIKRTDTEQWMHHRQLPPELRQ 431 (697)
Q Consensus 359 stvG~gd~~~~~------~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 431 (697)
.|+|+||..... .+-++|.+++.++.+.++-.+|+-|++-........ ++|+.+...+ --|-.|.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 478999875443 446778888888888999999999998877766655 7787665544 45567899999988
Q ss_pred H
Q 005422 432 S 432 (697)
Q Consensus 432 r 432 (697)
|
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 8
No 51
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.89 E-value=25 Score=45.42 Aligned_cols=46 Identities=17% Similarity=0.446 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccC
Q 005422 121 LEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALP 186 (697)
Q Consensus 121 ~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP 186 (697)
...++...+.+.-.+|.+.++++.-. .|-. . |+++ |.++|++-+.-
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~------~---y~rn~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-----------YGFF------F---YFRNAWNWLDFVVVIV 916 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH------H---HHhhHHhhhhHHHhhh
Confidence 45677888999999999999998531 1221 1 9998 99999976553
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=70.04 E-value=5.9 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=33.0
Q ss_pred eEecCCCEEEccCCCcC-EEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 497 ALCTEGTFLVREGDPVN-EMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..++||+..-..-.+.. ++++|++|.+.+. .++ + ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~-~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG-E-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT-E-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc-E-----EeEccCCEEEE
Confidence 46788887766655666 9999999999987 333 3 35788998753
No 53
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=68.32 E-value=27 Score=33.99 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hcCCCHHHHHhcC--ChhHHHHHHHHH
Q 005422 412 KRTDTEQWMHHRQLPPELRQSVRKYDQYKWVA--TRGVDEEVLLKGL--PTDLRRDIKRHI 468 (697)
Q Consensus 412 k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~~~~e~~il~~L--p~~Lr~~i~~~l 468 (697)
-+++++++++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |.++-+++..+.
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3567778886 59999999999999877765 3578899999998 777877776554
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.83 E-value=26 Score=32.00 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=43.7
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS 575 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t 575 (697)
...++||+.+-..-....++++|++|++++...++|+ ...+.+||.+--. +. .+..+++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~-------~~-------~~H~~~N~e 99 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALD-------KH-------DRHYLRAGE 99 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEEC-------CC-------CcEEEEcCC
Confidence 3467888755432222247999999999986333344 3579999987622 21 244566568
Q ss_pred cEEEEEec
Q 005422 576 EVEAFALR 583 (697)
Q Consensus 576 ~~el~~L~ 583 (697)
+++++.+-
T Consensus 100 ~~~~l~v~ 107 (125)
T PRK13290 100 DMRLVCVF 107 (125)
T ss_pred CEEEEEEE
Confidence 88877653
No 55
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.18 E-value=2e+02 Score=36.27 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhHHHHhhhccCchhhhhheecc
Q 005422 165 PSKIASRYLKKGFWIDFVAALPLPQVLIWFIIP 197 (697)
Q Consensus 165 ~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~ 197 (697)
+++++--+-..|+.+|++|++-|..-+..-..|
T Consensus 852 ~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~ 884 (1381)
T KOG3614|consen 852 PQKVRVYFADFWNLIDLLAILLFLVGPVLRLLP 884 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhheeEecC
Confidence 345554444459999999998776555544445
No 56
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=63.27 E-value=36 Score=26.41 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH---HHHHHHHHHHHHHHH
Q 005422 371 VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL---EEWRIKRTDTEQWMH 421 (697)
Q Consensus 371 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~---~e~~~k~~~~~~~m~ 421 (697)
.+..+|.+.+.++-+++++.+-+.+-.++++.+.+. .++.+|++.+-+.+.
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 344566664444433333333344555565544332 358888888877653
No 57
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.32 E-value=3.7e+02 Score=33.02 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccceeeecCC--CchhhHHHHHHHHHHHHHHHHhhhee-EEEE
Q 005422 84 RWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGI--PLEVILTIIRTLGDAFYIIQIYIRFR-TAYV 149 (697)
Q Consensus 84 ~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~d~~f~iDi~l~f~-t~y~ 149 (697)
+.+.+-++.+++++...-.| ..|-+++- .--..+..++-++.+||+++|+++.. .|.+
T Consensus 80 wfe~vsmlvillncvtlgmf--------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMF--------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHHhhhhhccc--------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666677777655443 23444332 22346778899999999999999976 4543
No 58
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.24 E-value=1.5e+02 Score=38.63 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhee-EEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCC
Q 005422 122 EVILTIIRTLGDAFYIIQIYIRFR-TAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNL 199 (697)
Q Consensus 122 ~~~~~~~~~i~d~~f~iDi~l~f~-t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~ 199 (697)
...+.+.+.+.-.+|.+++.++.- .|+ +.|.++ |.++|.+-+. +..+-. . .
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~al~~---------------------~~yF~~~~n~fD~~iv~-l~~~~~--~---~ 524 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIYALGP---------------------RNYFRRGWNIFDLIIVL-LSLLEL--L---L 524 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc---------------------HHHHhhhcchheEEEEe-hhhHHh--c---c
Confidence 456667777888888889888743 222 247766 8889988777 443322 1 1
Q ss_pred CCchhhhhhHHHHHHHHHHhhhHHHHHhHhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 005422 200 RGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLFML 257 (697)
Q Consensus 200 ~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~l 257 (697)
. .......||.+|+++ +.|+.+..+..+.+.+..+-. .+++.+|+++++
T Consensus 525 ~---~~~g~svLr~frllR-Ifkl~k~wp~l~~lv~~i~ns-----~~~l~~L~l~l~ 573 (1592)
T KOG2301|consen 525 K---NVYGLSVLRSFRLLR-IFKLIKSWPTLNDLVKSIFNS-----GKALGNLVLFLF 573 (1592)
T ss_pred c---chHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhccc-----HHHHHHHHHHHH
Confidence 1 122233444443333 445555566666655554322 234556655543
No 59
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=59.61 E-value=4e+02 Score=32.51 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHH
Q 005422 423 RQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICL 470 (697)
Q Consensus 423 ~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~ 470 (697)
.+||+.||..|..+..... +..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhe
Confidence 3789999999987765433 233467888888888887766543
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=54.44 E-value=35 Score=32.50 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=41.3
Q ss_pred EccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHH
Q 005422 506 VREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRAD 585 (697)
Q Consensus 506 ~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~ 585 (697)
++.. ..++++++++|.+.+-..++|+-. ...+++||+|=- .+. -+.+-++.++|.++.+.+.
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flv-------P~g-------vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLL-------PPH-------VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEe-------CCC-------CCcccccCCCcEEEEEEeC
Confidence 4443 378999999999999776665422 257999998742 211 2334455577777777665
Q ss_pred H
Q 005422 586 D 586 (697)
Q Consensus 586 d 586 (697)
.
T Consensus 105 r 105 (159)
T TIGR03037 105 R 105 (159)
T ss_pred C
Confidence 3
No 61
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=53.56 E-value=21 Score=31.67 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=33.9
Q ss_pred CCCChhHHHHHHHHHHHHHHH----------hcCCCHHHHHhcCChhHHHHHHHH
Q 005422 423 RQLPPELRQSVRKYDQYKWVA----------TRGVDEEVLLKGLPTDLRRDIKRH 467 (697)
Q Consensus 423 ~~lp~~L~~rVr~y~~y~w~~----------~~~~~e~~il~~Lp~~Lr~~i~~~ 467 (697)
.-||+++|..|...+.-.-.. ....|...++..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 368999999999987654321 123456799999999999998653
No 62
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=53.22 E-value=17 Score=33.58 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005422 344 FNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTT 403 (697)
Q Consensus 344 ~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 403 (697)
......++|+.+.++.. +-++..|.+...+++.++..++++++.+...|++.+++....
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45667788888777765 445688999999999999999999999999999999987543
No 63
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=49.67 E-value=73 Score=31.60 Aligned_cols=58 Identities=19% Similarity=0.485 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHHHHHhHhcCCccC-CcccHHHHHHHHhcccceE--ecCCCEEEccCCCcC
Q 005422 455 GLPTDLRRDIKRHICLDLVRRVPLF-DQMDERMLDAICERLKPAL--CTEGTFLVREGDPVN 513 (697)
Q Consensus 455 ~Lp~~Lr~~i~~~l~~~~l~~v~~F-~~l~~~~l~~l~~~l~~~~--~~kge~I~~eGd~~~ 513 (697)
.+|.+ .+.+...+...++.-.-.| ...++...........+.. +++|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44555 3333344444444333334 3567778888888899888 999999999999765
No 64
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=48.36 E-value=24 Score=28.82 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=28.5
Q ss_pred ecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 499 CTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 499 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.++|..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 45555444332 28899999999998644 444 35788999864
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=43.54 E-value=59 Score=31.52 Aligned_cols=62 Identities=13% Similarity=0.253 Sum_probs=42.4
Q ss_pred CCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHH
Q 005422 510 DPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLK 588 (697)
Q Consensus 510 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~ 588 (697)
++.++++++++|.+.+...++|+.. ...+.+||+|=- .+. -+.+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll-------P~g-------vpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL-------PPH-------VPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe-------CCC-------CCcCCccCCCeEEEEEEeCCCC
Confidence 5678999999999998776666422 257899998742 211 1233455688888888776543
No 66
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=41.64 E-value=1.1e+02 Score=33.48 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 344 FNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 344 ~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
.--|+-++-+++..+.+++-++....-..-..+++++.+++++.|.+.|.++.+.+|-.+.
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4456667767777776666555422222238889999999999999999999988875443
No 67
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=41.61 E-value=65 Score=29.93 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=36.7
Q ss_pred ccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEecC-CeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTNG-GRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|...-..-.+ .+++++|++|...+...+. +.+.. ...+++||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 345567888876555433 5799999999999876443 33333 46899999765
No 68
>PRK09108 type III secretion system protein HrcU; Validated
Probab=39.08 E-value=90 Score=33.92 Aligned_cols=69 Identities=7% Similarity=0.225 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 368 STYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 368 ~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
+......++.++..++..++.++++-.+..+.-....-.++++-...++++-+++..-+|+++.|+|+-
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334455566777777777777777767777766666666677777789999999999999999998764
No 69
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.33 E-value=63 Score=29.32 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=39.2
Q ss_pred ccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHh
Q 005422 494 LKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEE 550 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 550 (697)
+....+.||+.+-..-.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 345668999998887777 77999999999998765 33 3578999998754
No 70
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.31 E-value=77 Score=28.80 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=33.8
Q ss_pred cccceEecCCCEE-EccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 493 RLKPALCTEGTFL-VREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 493 ~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
......+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3455667787775 44444578999999999998653 33 3478888875
No 71
>PRK08156 type III secretion system protein SpaS; Validated
Probab=34.42 E-value=1.2e+02 Score=33.03 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 371 VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 371 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
....+..++..++..++.++++-.+..+.-....-.++++-..+++++-.++..-+|+++.|+|+-
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 170 LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334444555555555555555555555555545555566666778889999999999999998764
No 72
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.24 E-value=1.4e+02 Score=32.45 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 370 YVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 370 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
.....+..++..++..++.++++-.+..++-....-.++++-...++++-.++..-+|+++.|+|+=
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~ 247 (359)
T PRK05702 181 AALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQL 247 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3445556666666666666666656666655555555666666778888899999999998887654
No 73
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=32.00 E-value=1.4e+02 Score=32.50 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005422 371 VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYD 437 (697)
Q Consensus 371 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~ 437 (697)
....+...+..+++.++.++++-.+..++-....-.++.+-...++++-+++..-+|+++.|+|+--
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~ 241 (349)
T PRK12721 175 GLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQ 241 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3444556666666666666666555666555555556666667788999999999999999987653
No 74
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=30.65 E-value=2.3e+02 Score=21.06 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 005422 375 IFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDT 416 (697)
Q Consensus 375 ~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~ 416 (697)
.++.+..+.-++....+...++++-.......++++..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555566666666666666777777666654
No 75
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=30.45 E-value=1.6e+02 Score=31.91 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 371 VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 371 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
....+..++..+++.++.++++-.+..+.-....-.++++-...++++-+++..-+|+++.|+|+=
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~ 240 (347)
T TIGR00328 175 AITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444555666666666666665555556555555555666667778999999999999999988754
No 76
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=30.08 E-value=1.2e+02 Score=25.67 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=43.7
Q ss_pred cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEE
Q 005422 493 RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVK 572 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~ 572 (697)
......+.||..+-....++.+..||++|.+.- .++ .+.+||+.=.. +. +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p-------~g-------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLP-------PG-------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE--------TT-------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeC-------CC-------CccccC
Confidence 345667889998888777788888999999863 222 34788775432 21 567788
Q ss_pred EcccEEEEE
Q 005422 573 SISEVEAFA 581 (697)
Q Consensus 573 A~t~~el~~ 581 (697)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 77
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.78 E-value=1.6e+02 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 372 GEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 372 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
...+..++..++..++.++++-.+..++-....-.++++-...++++-+++..-+|+++.|+|+-
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~ 247 (386)
T PRK12468 183 LGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 247 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33344444444555555555555555554444555566666778889999999999999887754
No 78
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=29.72 E-value=1.7e+02 Score=31.75 Aligned_cols=66 Identities=9% Similarity=0.217 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005422 372 GEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYD 437 (697)
Q Consensus 372 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~ 437 (697)
...++..+..+++.++.++++-.+..+.-....-.++++-...++++-+++..-+|+++.|+|+--
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~ 240 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELH 240 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 334555555555555555555555555544445555666667789999999999999999987653
No 79
>PHA03029 hypothetical protein; Provisional
Probab=28.85 E-value=2.6e+02 Score=22.82 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 005422 370 YVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIR 405 (697)
Q Consensus 370 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 405 (697)
+..|.+|-++..++=.++--.+||.+-.++-|.++-
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ 37 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKI 37 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888887777778888888888776653
No 80
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=28.80 E-value=1.5e+02 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------------hHhHHHHHHHHHHHHHHHHh
Q 005422 378 IIIATLGLVLFALLIGNMQTYLQST-------------TIRLEEWRIKRTDTEQWMHH 422 (697)
Q Consensus 378 i~i~i~G~~lfa~lig~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~~ 422 (697)
+++.++|+.+||++++-+.+.-... ....++|+.+.+...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6778999999999998764322111 12568899998888866653
No 81
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=28.69 E-value=2e+02 Score=28.38 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=32.8
Q ss_pred cceEecCCCEE---------EccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFL---------VREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I---------~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.||... +++.....++|+|++|...+...+...+.. ...+.+||.+-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 34456777742 344334469999999999887643322222 35789999854
No 82
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.76 E-value=1.3e+02 Score=32.86 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecC-CeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNG-GRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|...-..-....++.+|++|++++...+. |+. . ...+++||++=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~--~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-Y--IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-E--EeEECCCCEEE
Confidence 344577777653322345689999999999977553 443 2 24799999864
No 83
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.16 E-value=1.9e+02 Score=31.59 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005422 371 VGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKY 436 (697)
Q Consensus 371 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 436 (697)
....+...+..+++.++-++++-.+..+.-....-.++++-...++++-+++..-+|+++.|+|+-
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~ 249 (358)
T PRK13109 184 LPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSL 249 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344455555555666666666655666655555555666667778999999999999999987764
No 84
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=25.55 E-value=1.1e+02 Score=27.09 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCChhHHHHHHHHHHHHHHHh---c------CC----CHHHHHhcCChhHHHHHHHHHHHh
Q 005422 424 QLPPELRQSVRKYDQYKWVAT---R------GV----DEEVLLKGLPTDLRRDIKRHICLD 471 (697)
Q Consensus 424 ~lp~~L~~rVr~y~~y~w~~~---~------~~----~e~~il~~Lp~~Lr~~i~~~l~~~ 471 (697)
-||+++|..|..-....-... + +. -..++|..||+++|.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999854433221100 0 00 025899999999999998765443
No 85
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.05 E-value=1.1e+03 Score=29.06 Aligned_cols=117 Identities=15% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccccccccccccCCCCCC---CCcccc
Q 005422 252 LVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNV---SSYKFG 328 (697)
Q Consensus 252 l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~---~~~~~g 328 (697)
+++|+.+.|+.|-.-|+. .|++.-.++..-..+.. +.|.+|
T Consensus 568 VmmFVm~livaai~vFlF------------------------------------Ey~SPvgyn~~l~~gkkpggp~Ftig 611 (1258)
T KOG1053|consen 568 VMMFVMCLIVAAITVFLF------------------------------------EYFSPVGYNRNLANGKKPGGPSFTIG 611 (1258)
T ss_pred HHHHHHHHHHHHHHHHHH------------------------------------hhcCcccccccccCCCCCCCcceehh
Q ss_pred chhhccccCccCcchHHHHHHHHH--HHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--
Q 005422 329 IYADAITFDVTTAPFFNKYFYCLW--WGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI-- 404 (697)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~Y~~sly--wal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~-- 404 (697)
.++| ||+.-=.||- -..|....-++...+++++++++.|...+|++..+-.-..
T Consensus 612 --------------------kaiwllwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d 669 (1258)
T KOG1053|consen 612 --------------------KAIWLLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYD 669 (1258)
T ss_pred --------------------hHHHHHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred -----------------------------hHHHHHHHHHHHHHHHHhCCCC
Q 005422 405 -----------------------------RLEEWRIKRTDTEQWMHHRQLP 426 (697)
Q Consensus 405 -----------------------------~~~e~~~k~~~~~~~m~~~~lp 426 (697)
..+..|....++.+||.+.+.|
T Consensus 670 ~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~ 720 (1258)
T KOG1053|consen 670 TVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQP 720 (1258)
T ss_pred hccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHHhccC
No 86
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.73 E-value=2.4e+02 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH---hHHHHHHHHHHHHHHHHh
Q 005422 383 LGLVLFALLIGNMQTYLQSTTI---RLEEWRIKRTDTEQWMHH 422 (697)
Q Consensus 383 ~G~~lfa~lig~~~~~l~~~~~---~~~e~~~k~~~~~~~m~~ 422 (697)
+++++-|.++|...++++.... +.+++++.+++.++.++.
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888877654 444555555555555543
No 87
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=24.49 E-value=66 Score=25.00 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=15.8
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 005422 450 EVLLKGLPTDLRRDIKRHI 468 (697)
Q Consensus 450 ~~il~~Lp~~Lr~~i~~~l 468 (697)
-+++++||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3688999999999987654
No 88
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.99 E-value=1.7e+02 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=34.8
Q ss_pred ccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.||...-..=.+ .+++++|++|++++...+ +|+.. ...+++||.+=
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~~ 300 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVGY 300 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEEE
Confidence 455667888876443333 679999999999986533 33322 24699999753
No 89
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.11 E-value=1.5e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCh-----hHHHHHHHHH
Q 005422 412 KRTDTEQWMHHRQLPP-----ELRQSVRKYD 437 (697)
Q Consensus 412 k~~~~~~~m~~~~lp~-----~L~~rVr~y~ 437 (697)
+..++.++++.+++|. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3567889999999985 6888888774
No 90
>PRK06298 type III secretion system protein; Validated
Probab=23.04 E-value=2.5e+02 Score=30.56 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005422 377 AIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYD 437 (697)
Q Consensus 377 ~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~ 437 (697)
.++..++..++.++++-.+..+.-..-.-.++++-...++++-+++..-+|+++.|+|+--
T Consensus 182 ~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~ 242 (356)
T PRK06298 182 EILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIA 242 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3333333333334444444444444444455566667789999999999999999987653
No 91
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=22.87 E-value=3.1e+02 Score=25.23 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=35.5
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCC-----eeeeeeeeecCCCCeecH
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGG-----RTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g-----~~~~~~~~~l~~Gd~fGe 549 (697)
....++||....-.-..+.++.+|++|+.++... .++ +.....+ .+++||+|--
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~v 96 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFVV 96 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEEE
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeecccceee
Confidence 3445588888765555788999999999996443 332 1111112 4999999863
No 92
>PHA02909 hypothetical protein; Provisional
Probab=22.81 E-value=82 Score=24.13 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=27.4
Q ss_pred cccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 358 LSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 358 lstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
|.++.||.-.-.+..|..|+|.+.+ ++|-.++-.|-+++.-
T Consensus 14 mlsvdygngkkvyytentfcimvsf---ilfviiflsmftilac 54 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMVSF---ILFVIIFLSMFTILAC 54 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567788877777788888876543 4555555566666543
No 93
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.63 E-value=8.8e+02 Score=29.34 Aligned_cols=73 Identities=26% Similarity=0.488 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcccccCCCc-----ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHHHHH
Q 005422 348 FYCLWWGLKNLSSVGQNLA-----TSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIR-LEEWRIKRTDTEQWMH 421 (697)
Q Consensus 348 ~~slywal~tlstvG~gd~-----~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~-~~e~~~k~~~~~~~m~ 421 (697)
+.+++|++-.++-++-.++ -..+.++.+|.+-.++.=+++.-.+|+.|.+-.|..... ..||+ -..++-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK--FARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK--FARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH--HHHHHHHHH
Confidence 3578898876655443332 233455555555555555666666666666665554322 22443 344556666
Q ss_pred h
Q 005422 422 H 422 (697)
Q Consensus 422 ~ 422 (697)
.
T Consensus 633 y 633 (822)
T KOG3609|consen 633 Y 633 (822)
T ss_pred H
Confidence 5
No 94
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=22.43 E-value=1.4e+03 Score=27.39 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHH
Q 005422 370 YVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIR-LEEWRIKRTD 415 (697)
Q Consensus 370 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~-~~e~~~k~~~ 415 (697)
..+-.+|.+++.+.-+++.-.+|+.|.+..+..... .++|+-.+-.
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 457778888888888888889999999888876654 4566555443
No 95
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=22.29 E-value=4.9e+02 Score=27.51 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHhcccccCCCcccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005422 354 GLKNLSSVGQNLATSTYVGEIIFAIIIATL-GLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQS 432 (697)
Q Consensus 354 al~tlstvG~gd~~~~~~~E~~f~i~i~i~-G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~r 432 (697)
++..+..+|-+-..| +++.++-.+ +.+..+|+.-.+..|.-....-..|++-..+++++-.+..+-+|+++.+
T Consensus 164 t~~~lp~CG~~C~~~------Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKsk 237 (349)
T COG4792 164 TFLYLPGCGLYCALP------VVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSK 237 (349)
T ss_pred HHhhccccccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHH
Confidence 445556666443333 233333333 3336677777777776666666777777788888888888888888877
Q ss_pred HHHH
Q 005422 433 VRKY 436 (697)
Q Consensus 433 Vr~y 436 (697)
=|+.
T Consensus 238 RRq~ 241 (349)
T COG4792 238 RRQL 241 (349)
T ss_pred HHHH
Confidence 6555
No 96
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.15 E-value=90 Score=35.70 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=42.8
Q ss_pred HHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 349 YCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQ 400 (697)
Q Consensus 349 ~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 400 (697)
.|+||++....--| -|+.|.....++..-++-++-+++-+-..+|++..|.
T Consensus 598 NsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred HHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 59999999987755 3999999999999988888888888877888887764
No 97
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.14 E-value=1.8e+02 Score=33.56 Aligned_cols=52 Identities=15% Similarity=0.351 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 348 FYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYL 399 (697)
Q Consensus 348 ~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 399 (697)
-.++||+-..|..-|-|.-+|.+..-+++.++++=+.+++-|-..+|++..|
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 3578877777777788888999988888888888777777777777777765
No 98
>CHL00038 psbL photosystem II protein L
Probab=21.60 E-value=1.3e+02 Score=21.03 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=6.8
Q ss_pred HHHHHHHHh
Q 005422 349 YCLWWGLKN 357 (697)
Q Consensus 349 ~slywal~t 357 (697)
.|+|||+..
T Consensus 16 TSLy~GLLl 24 (38)
T CHL00038 16 TSLYWGLLL 24 (38)
T ss_pred hhHHHHHHH
Confidence 589999743
No 99
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.06 E-value=1.2e+02 Score=28.66 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=32.0
Q ss_pred eEecCCCE--EEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhh
Q 005422 497 ALCTEGTF--LVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEEL 551 (697)
Q Consensus 497 ~~~~kge~--I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 551 (697)
..++||-. ..+--...+++..|++|...+.. +++ ...++|||+.|--+
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gFpA 96 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGFPA 96 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-CCe------eEEecCCceeeccC
Confidence 33444432 33344567899999999998753 344 35889999988543
No 100
>PRK06771 hypothetical protein; Provisional
Probab=20.98 E-value=3.9e+02 Score=23.06 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005422 389 ALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRK 435 (697)
Q Consensus 389 a~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~ 435 (697)
.|+.-.+..+.+.+..+....+.+++.+.+.+..-...+.+.+.++.
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 34444555555666777777777777766666554443334444444
No 101
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=20.77 E-value=5.9e+02 Score=27.62 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchh
Q 005422 126 TIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQ 189 (697)
Q Consensus 126 ~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~ 189 (697)
.++++++-++|-+..+++|... |+ |. -+.++ --+||++|++|+..
T Consensus 256 FiVEt~CIiWFtfEllvRf~aC---Ps-------------K~---~Ff~nimNiIDiVaI~PyFi 301 (507)
T KOG1545|consen 256 FIVETLCIIWFTFELLVRFFAC---PS-------------KA---TFFRNIMNIIDIVAIIPYFI 301 (507)
T ss_pred HhHHHHHHHHHhHHHHHHHhcC---cc-------------HH---HHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999855 22 11 23333 45899999999853
Done!