Query 005422
Match_columns 697
No_of_seqs 584 out of 3305
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 3.2E-33 1.1E-37 302.0 16.8 343 75-607 3-347 (355)
2 3ukn_A Novel protein similar t 100.0 7.9E-32 2.7E-36 269.2 14.5 202 396-613 1-204 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.2E-30 4.2E-35 257.7 22.5 192 401-607 2-193 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 2E-30 6.9E-35 257.1 20.8 190 400-605 2-191 (202)
5 1orq_C Potassium channel; volt 99.9 3.5E-21 1.2E-25 193.9 15.5 211 84-401 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 2.4E-19 8E-24 169.6 15.7 144 449-605 5-148 (160)
7 3dn7_A Cyclic nucleotide bindi 99.8 2.3E-18 7.9E-23 168.5 15.5 178 470-675 6-184 (194)
8 2r9r_B Paddle chimera voltage 99.7 1.2E-17 4.1E-22 187.6 17.6 294 76-468 174-488 (514)
9 3gyd_A CNMP-BD protein, cyclic 99.7 3.3E-17 1.1E-21 159.9 16.8 154 448-612 12-170 (187)
10 3mdp_A Cyclic nucleotide-bindi 99.7 2.3E-17 7.9E-22 152.4 13.6 133 470-611 5-139 (142)
11 3ocp_A PRKG1 protein; serine/t 99.7 1.5E-17 5.1E-22 153.7 12.1 131 455-600 7-137 (139)
12 4ev0_A Transcription regulator 99.7 2.2E-16 7.6E-21 156.8 19.9 134 473-617 1-135 (216)
13 3idb_B CAMP-dependent protein 99.7 2.4E-17 8.3E-22 156.4 11.6 127 463-600 30-156 (161)
14 1wgp_A Probable cyclic nucleot 99.7 9.4E-18 3.2E-22 154.4 7.8 130 470-599 5-134 (137)
15 2pqq_A Putative transcriptiona 99.7 1E-16 3.5E-21 149.2 14.5 124 470-604 4-128 (149)
16 3dv8_A Transcriptional regulat 99.7 9.9E-16 3.4E-20 152.5 18.6 132 471-613 3-137 (220)
17 3d0s_A Transcriptional regulat 99.7 4.5E-16 1.5E-20 156.1 15.6 136 470-616 5-141 (227)
18 2z69_A DNR protein; beta barre 99.7 4.7E-16 1.6E-20 145.6 14.6 128 470-607 11-139 (154)
19 3fx3_A Cyclic nucleotide-bindi 99.7 4.4E-16 1.5E-20 157.2 14.7 132 469-611 9-141 (237)
20 3e97_A Transcriptional regulat 99.7 1.4E-15 4.8E-20 152.9 17.8 131 470-611 5-136 (231)
21 1vp6_A CNBD, cyclic-nucleotide 99.7 7.1E-16 2.4E-20 141.8 13.5 124 469-609 9-132 (138)
22 3iwz_A CAP-like, catabolite ac 99.6 2.7E-15 9.3E-20 150.4 18.0 132 470-611 10-147 (230)
23 3dkw_A DNR protein; CRP-FNR, H 99.6 1.3E-15 4.3E-20 152.6 14.1 133 470-612 8-141 (227)
24 3pna_A CAMP-dependent protein 99.6 1.5E-15 5.2E-20 142.9 13.2 118 467-599 34-151 (154)
25 2gau_A Transcriptional regulat 99.6 3.4E-15 1.2E-19 150.1 16.4 133 474-617 13-146 (232)
26 1o5l_A Transcriptional regulat 99.6 1.9E-15 6.6E-20 150.3 12.9 173 476-675 4-180 (213)
27 3shr_A CGMP-dependent protein 99.6 3.9E-15 1.3E-19 155.9 15.5 141 450-605 18-158 (299)
28 1zyb_A Transcription regulator 99.6 2.6E-15 8.8E-20 151.4 13.2 132 468-609 15-149 (232)
29 2fmy_A COOA, carbon monoxide o 99.6 3.8E-15 1.3E-19 148.6 14.0 129 471-617 4-132 (220)
30 3ryp_A Catabolite gene activat 99.6 1.3E-14 4.3E-19 143.4 16.7 124 477-611 2-127 (210)
31 4ava_A Lysine acetyltransferas 99.6 6.8E-15 2.3E-19 156.5 15.1 127 470-608 12-138 (333)
32 2oz6_A Virulence factor regula 99.6 2.1E-14 7.2E-19 141.5 17.5 119 482-611 1-124 (207)
33 1ft9_A Carbon monoxide oxidati 99.6 7.6E-15 2.6E-19 146.7 12.7 123 472-612 1-123 (222)
34 2d93_A RAP guanine nucleotide 99.6 1.1E-15 3.7E-20 140.2 5.1 124 457-595 2-127 (134)
35 3kcc_A Catabolite gene activat 99.6 3.6E-14 1.2E-18 145.8 16.6 121 480-611 55-177 (260)
36 3shr_A CGMP-dependent protein 99.6 8.4E-15 2.9E-19 153.3 11.4 130 467-607 153-284 (299)
37 2qcs_B CAMP-dependent protein 99.5 5E-14 1.7E-18 146.6 15.5 126 468-604 154-281 (291)
38 2qcs_B CAMP-dependent protein 99.5 8.8E-14 3E-18 144.8 16.4 127 466-607 34-160 (291)
39 3of1_A CAMP-dependent protein 99.5 3.5E-14 1.2E-18 143.6 12.5 118 468-599 122-239 (246)
40 3tnp_B CAMP-dependent protein 99.5 5.4E-14 1.9E-18 154.5 14.6 127 463-600 137-263 (416)
41 3of1_A CAMP-dependent protein 99.5 3.4E-14 1.2E-18 143.6 11.6 120 469-603 5-124 (246)
42 4din_B CAMP-dependent protein 99.5 4.2E-14 1.4E-18 153.6 11.0 129 467-606 244-374 (381)
43 2a9h_A Voltage-gated potassium 99.5 9.8E-14 3.4E-18 130.4 10.9 64 346-409 84-147 (155)
44 4din_B CAMP-dependent protein 99.5 2E-13 6.7E-18 148.3 14.1 127 465-606 124-250 (381)
45 3e6c_C CPRK, cyclic nucleotide 99.5 3.6E-13 1.2E-17 137.1 14.0 127 472-612 10-137 (250)
46 3tnp_B CAMP-dependent protein 99.5 8E-14 2.7E-18 153.2 9.6 125 468-603 264-395 (416)
47 3vou_A ION transport 2 domain 99.5 7.6E-13 2.6E-17 123.9 14.4 86 347-432 53-148 (148)
48 2bgc_A PRFA; bacterial infecti 99.5 1.8E-12 6.3E-17 130.9 18.2 124 480-613 2-129 (238)
49 1o7f_A CAMP-dependent RAP1 gua 99.4 4.5E-13 1.5E-17 149.3 14.3 136 456-603 27-165 (469)
50 3la7_A Global nitrogen regulat 99.4 1.8E-12 6E-17 131.5 16.7 119 484-611 30-152 (243)
51 4h33_A LMO2059 protein; bilaye 99.4 2.4E-13 8.4E-18 125.4 8.6 92 347-438 44-135 (137)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 6E-13 2E-17 148.3 12.3 121 467-601 333-455 (469)
53 2ih3_C Voltage-gated potassium 99.3 6.7E-12 2.3E-16 113.4 11.8 59 346-404 61-119 (122)
54 4f7z_A RAP guanine nucleotide 99.3 6.8E-12 2.3E-16 152.7 15.0 136 451-599 23-161 (999)
55 3cf6_E RAP guanine nucleotide 99.3 5.9E-12 2E-16 146.3 11.7 133 450-597 12-146 (694)
56 3b02_A Transcriptional regulat 99.3 2.8E-11 9.6E-16 118.2 12.8 96 497-610 2-98 (195)
57 3eff_K Voltage-gated potassium 99.2 5.7E-11 1.9E-15 109.9 11.5 89 346-435 40-129 (139)
58 4f7z_A RAP guanine nucleotide 99.2 7.6E-11 2.6E-15 143.5 13.8 113 468-594 334-448 (999)
59 2zcw_A TTHA1359, transcription 99.2 8.4E-11 2.9E-15 115.4 11.1 100 491-609 2-104 (202)
60 3rvy_A ION transport protein; 99.1 8.2E-11 2.8E-15 122.4 10.0 60 345-404 179-244 (285)
61 2q67_A Potassium channel prote 99.1 1.5E-09 5.1E-14 96.6 13.2 60 347-406 50-109 (114)
62 3ouf_A Potassium channel prote 99.0 2.7E-09 9.2E-14 92.0 10.5 55 347-401 33-87 (97)
63 2k1e_A Water soluble analogue 98.9 2.2E-10 7.4E-15 100.2 2.2 58 347-404 41-98 (103)
64 3ldc_A Calcium-gated potassium 98.9 1.1E-08 3.7E-13 85.4 10.6 53 347-399 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 3.7E-10 1.3E-14 107.6 -2.3 64 346-409 67-130 (166)
66 1xl4_A Inward rectifier potass 98.6 6.5E-08 2.2E-12 100.7 9.0 56 346-401 82-137 (301)
67 3um7_A Potassium channel subfa 98.5 2.1E-07 7.2E-12 96.5 10.2 57 346-402 115-171 (309)
68 1p7b_A Integral membrane chann 98.5 2.1E-07 7.3E-12 97.8 8.3 58 347-404 97-154 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 6.5E-07 2.2E-11 93.8 11.4 60 346-405 78-137 (321)
70 3sya_A G protein-activated inw 98.4 1.9E-06 6.6E-11 90.4 12.8 59 347-405 92-152 (340)
71 4gx0_A TRKA domain protein; me 98.3 2.6E-06 8.9E-11 97.0 11.6 53 347-399 52-105 (565)
72 3um7_A Potassium channel subfa 98.3 2.6E-06 8.9E-11 88.3 10.0 61 347-407 225-291 (309)
73 3ukm_A Potassium channel subfa 98.1 3.2E-06 1.1E-10 86.3 7.9 56 346-401 93-148 (280)
74 3ukm_A Potassium channel subfa 98.1 5.9E-06 2E-10 84.3 8.8 57 347-403 202-265 (280)
75 3spc_A Inward-rectifier K+ cha 98.1 1.2E-05 4.2E-10 84.4 10.9 59 346-404 94-154 (343)
76 4dxw_A Navrh, ION transport pr 98.0 0.00012 4.1E-09 73.1 15.6 75 84-187 13-88 (229)
77 1lnq_A MTHK channels, potassiu 97.8 1.4E-06 4.7E-11 92.5 -1.9 54 349-402 48-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.6 7.9E-05 2.7E-09 68.9 7.0 78 84-190 22-99 (147)
79 1ors_C Potassium channel; volt 97.3 0.00025 8.6E-09 64.4 6.1 78 84-190 7-84 (132)
80 3fjs_A Uncharacterized protein 70.4 12 0.00042 31.8 7.5 67 495-582 39-105 (114)
81 3rns_A Cupin 2 conserved barre 68.0 18 0.00062 35.0 9.0 69 494-583 39-107 (227)
82 2ozj_A Cupin 2, conserved barr 65.2 20 0.00069 30.1 7.8 64 498-582 44-107 (114)
83 3lwc_A Uncharacterized protein 60.7 18 0.00061 31.2 6.6 45 496-548 44-88 (119)
84 2pfw_A Cupin 2, conserved barr 60.1 35 0.0012 28.5 8.4 67 495-582 37-103 (116)
85 3kg2_A Glutamate receptor 2; I 58.9 10 0.00035 44.1 6.2 55 346-401 563-617 (823)
86 1yhf_A Hypothetical protein SP 58.2 27 0.00091 29.2 7.2 67 495-582 43-109 (115)
87 2l53_B CAM, voltage-gated sodi 55.9 11 0.00039 24.5 3.2 21 612-632 3-23 (31)
88 2kxw_B Sodium channel protein 55.6 11 0.00038 23.7 3.0 19 613-631 4-22 (27)
89 1o5u_A Novel thermotoga mariti 50.3 38 0.0013 28.2 6.7 47 494-548 33-79 (101)
90 4e2g_A Cupin 2 conserved barre 49.9 37 0.0013 28.8 6.9 77 494-591 43-123 (126)
91 1yfu_A 3-hydroxyanthranilate-3 47.8 25 0.00085 32.6 5.4 59 511-586 54-113 (174)
92 1dgw_A Canavalin; duplicated s 45.5 21 0.00072 33.2 4.8 52 494-548 43-94 (178)
93 2gu9_A Tetracenomycin polyketi 42.9 31 0.0011 28.4 5.1 47 495-548 24-73 (113)
94 1v70_A Probable antibiotics sy 42.2 35 0.0012 27.5 5.2 47 495-548 31-78 (105)
95 2bnm_A Epoxidase; oxidoreducta 41.5 56 0.0019 30.3 7.2 49 497-548 122-173 (198)
96 3es4_A Uncharacterized protein 40.5 28 0.00095 30.1 4.3 44 498-548 48-91 (116)
97 3h8u_A Uncharacterized conserv 40.5 30 0.001 29.5 4.7 49 494-548 41-90 (125)
98 3rns_A Cupin 2 conserved barre 39.2 52 0.0018 31.7 6.7 68 494-582 155-223 (227)
99 3bcw_A Uncharacterized protein 38.9 20 0.00068 31.3 3.2 45 497-548 54-98 (123)
100 3d0j_A Uncharacterized protein 37.4 62 0.0021 28.9 6.1 64 507-585 45-110 (140)
101 1zvf_A 3-hydroxyanthranilate 3 36.8 68 0.0023 29.7 6.5 61 511-586 53-115 (176)
102 4b29_A Dimethylsulfoniopropion 35.6 44 0.0015 32.2 5.3 45 498-548 138-182 (217)
103 2q30_A Uncharacterized protein 35.5 1E+02 0.0035 25.0 7.2 67 496-582 37-105 (110)
104 3d82_A Cupin 2, conserved barr 34.3 54 0.0018 26.3 5.2 52 512-584 50-101 (102)
105 2i45_A Hypothetical protein; n 33.5 41 0.0014 27.7 4.3 69 499-587 35-103 (107)
106 3ibm_A Cupin 2, conserved barr 32.7 46 0.0016 30.4 4.8 47 495-548 59-105 (167)
107 1fi2_A Oxalate oxidase, germin 31.7 68 0.0023 30.1 6.0 53 494-548 74-130 (201)
108 2qnk_A 3-hydroxyanthranilate 3 30.5 1.1E+02 0.0037 30.6 7.2 65 504-586 44-108 (286)
109 2fqp_A Hypothetical protein BP 30.5 27 0.00093 28.4 2.6 48 496-548 22-70 (97)
110 3es1_A Cupin 2, conserved barr 29.9 42 0.0014 31.1 4.0 48 494-547 81-128 (172)
111 4axo_A EUTQ, ethanolamine util 29.9 93 0.0032 28.1 6.3 52 511-583 83-134 (151)
112 3jzv_A Uncharacterized protein 27.9 42 0.0014 30.7 3.7 46 496-548 57-102 (166)
113 1uij_A Beta subunit of beta co 27.4 52 0.0018 35.1 4.8 53 493-548 50-102 (416)
114 2opk_A Hypothetical protein; p 27.0 53 0.0018 27.6 3.9 34 510-548 51-84 (112)
115 2b8m_A Hypothetical protein MJ 26.9 48 0.0016 27.8 3.6 45 497-548 32-77 (117)
116 3kgz_A Cupin 2 conserved barre 26.7 43 0.0015 30.3 3.4 45 497-548 49-93 (156)
117 2q1z_B Anti-sigma factor CHRR, 26.4 72 0.0025 30.0 5.1 65 493-582 126-192 (195)
118 1y9q_A Transcriptional regulat 26.1 81 0.0028 29.1 5.5 45 497-548 109-155 (192)
119 1j58_A YVRK protein; cupin, de 26.0 75 0.0026 33.1 5.7 52 494-548 81-133 (385)
120 2vqa_A SLL1358 protein, MNCA; 26.0 81 0.0028 32.5 5.9 51 495-548 55-107 (361)
121 4i4a_A Similar to unknown prot 25.9 62 0.0021 27.4 4.3 79 496-595 38-120 (128)
122 1lr5_A Auxin binding protein 1 25.8 57 0.002 29.3 4.2 50 496-548 45-99 (163)
123 2f4p_A Hypothetical protein TM 25.7 80 0.0027 27.9 5.0 47 496-548 52-98 (147)
124 2ea7_A 7S globulin-1; beta bar 25.3 56 0.0019 35.0 4.6 53 493-548 62-114 (434)
125 3i7d_A Sugar phosphate isomera 25.3 50 0.0017 29.9 3.7 47 495-548 46-94 (163)
126 2o1q_A Putative acetyl/propion 24.9 57 0.002 29.0 3.9 50 494-548 46-95 (145)
127 1vj2_A Novel manganese-contain 24.6 55 0.0019 28.0 3.6 46 496-548 52-97 (126)
128 1o4t_A Putative oxalate decarb 24.6 59 0.002 28.2 3.9 46 496-548 61-107 (133)
129 2d5f_A Glycinin A3B4 subunit; 24.2 1.1E+02 0.0037 33.3 6.7 59 488-548 363-423 (493)
130 3l2h_A Putative sugar phosphat 24.2 52 0.0018 29.5 3.6 46 495-547 49-96 (162)
131 2cav_A Protein (canavalin); vi 24.0 65 0.0022 34.7 4.7 53 493-548 87-139 (445)
132 2vqa_A SLL1358 protein, MNCA; 23.6 1.1E+02 0.0038 31.4 6.4 52 494-548 236-289 (361)
133 4e2q_A Ureidoglycine aminohydr 23.1 1E+02 0.0036 30.6 5.7 69 496-584 74-142 (266)
134 3c3v_A Arachin ARAH3 isoform; 23.0 1E+02 0.0036 33.6 6.2 59 488-548 368-428 (510)
135 1sfn_A Conserved hypothetical 22.9 1.7E+02 0.0058 28.3 7.3 65 496-583 54-118 (246)
136 3bu7_A Gentisate 1,2-dioxygena 22.5 54 0.0019 34.7 3.7 48 495-548 126-173 (394)
137 3h7j_A Bacilysin biosynthesis 22.5 1E+02 0.0035 29.8 5.6 47 494-547 36-82 (243)
138 1fxz_A Glycinin G1; proglycini 22.4 1E+02 0.0036 33.4 6.0 54 493-548 339-394 (476)
139 3ht1_A REMF protein; cupin fol 22.4 65 0.0022 27.9 3.7 46 498-548 45-90 (145)
140 2pyt_A Ethanolamine utilizatio 21.8 64 0.0022 28.3 3.5 44 496-548 61-104 (133)
141 2vpv_A Protein MIF2, MIF2P; nu 21.1 55 0.0019 30.1 3.0 32 510-548 108-139 (166)
142 1j58_A YVRK protein; cupin, de 20.9 1.1E+02 0.0038 31.8 5.8 52 494-548 259-312 (385)
143 3fz3_A Prunin; TREE NUT allerg 20.8 1.5E+02 0.005 32.6 6.7 59 488-548 390-450 (531)
144 3h7j_A Bacilysin biosynthesis 20.3 1.5E+02 0.0053 28.5 6.3 46 496-548 149-195 (243)
145 3lag_A Uncharacterized protein 20.1 35 0.0012 28.2 1.3 49 495-547 20-69 (98)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=3.2e-33 Score=301.99 Aligned_cols=343 Identities=19% Similarity=0.259 Sum_probs=129.9
Q ss_pred ECCCChhHHHHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCc
Q 005422 75 LDPRGPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSR 154 (697)
Q Consensus 75 i~P~s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~ 154 (697)
..|.|+.. +.++++++++++++.-+..+ |.. .......+..++.++-++|.+|+++++... +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~--------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~-- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM--------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA-- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS--
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch--------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc--
Confidence 46777754 55556666666665555522 211 111122334445555566899999987421 11
Q ss_pred ccCCCeEeeChHHHHHHHhhh-hHHHHhhhc-cCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhHhHHH
Q 005422 155 VFGRGELVIDPSKIASRYLKK-GFWIDFVAA-LPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQ 232 (697)
Q Consensus 155 ~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~ 232 (697)
. .+|.++ |.++|++++ +|+..+.. + +...+...|++| +.|+.|..+..+.
T Consensus 66 -----~---------~~~~~~~~~i~Dl~~i~~p~~~~~~----~---~~~~~r~lr~~R-------~lrl~r~~~~~~~ 117 (355)
T 3beh_A 66 -----G---------VVRDRTPKIAIDVLAVLVPLAAFLL----D---GSPDWSLYCAVW-------LLKPLRDSTFFPV 117 (355)
T ss_dssp -----C---------SSCCCHHHHHHHHHHHHHHHHHHHS----C---CSGGGGGGGGGG-------GSHHHHTCSSHHH
T ss_pred -----c---------ceeccCcchHHHHHHHHHHHHHHHh----c---cchhHHHHHHHH-------HHHHHHHHHHHHH
Confidence 0 124444 899999999 68754421 1 111222222222 3444444444444
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCccccccccc
Q 005422 233 IINATGVVTETAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSN 312 (697)
Q Consensus 233 i~~~~~~~~~~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~ 312 (697)
+.+... . .....+..++++++..|+.||++|.+.. |.
T Consensus 118 l~~~l~---~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~-----------------------------------~~---- 154 (355)
T 3beh_A 118 LGRVLA---N-EARNLIGVTTLFGVVLFAVALAAYVIER-----------------------------------DI---- 154 (355)
T ss_dssp HHHHHH---H-THHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------------------TT----
T ss_pred HHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------------------CC----
Confidence 333321 1 1112233344455678999999998742 10
Q ss_pred ccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 005422 313 ITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLI 392 (697)
Q Consensus 313 l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~li 392 (697)
+.+.+..|..|+||++.|+||+||||++|.+..|++++++++++|++++++++
T Consensus 155 ---------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~ 207 (355)
T 3beh_A 155 ---------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA 207 (355)
T ss_dssp ---------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 01113357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhH
Q 005422 393 GNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDL 472 (697)
Q Consensus 393 g~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~ 472 (697)
|.+.+.++....+ +++. ...+.
T Consensus 208 ~~i~~~~~~~~~~----------------------------~~~~------------------------------~~~~~ 229 (355)
T 3beh_A 208 GILATGFYQEVRR----------------------------GDFV------------------------------RNWQL 229 (355)
T ss_dssp HHHHHHHHHHHHH----------------------------HHHH------------------------------HHHC-
T ss_pred HHHHHHHHHHHHH----------------------------Hhhc------------------------------ccchh
Confidence 9998876532110 0000 02467
Q ss_pred hcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhH
Q 005422 473 VRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELL 552 (697)
Q Consensus 473 l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l 552 (697)
++++|+|+++++++++.++..++.+.++|||.|++|||+++++|+|.+|.|+++..+ + ..+++|++|||.++
T Consensus 230 l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~ 301 (355)
T 3beh_A 230 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMAL 301 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHH
Confidence 888999999999999999999999999999999999999999999999999998654 1 47899999999987
Q ss_pred hhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 553 TWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 553 ~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
+.+.+ ++++++|.++|+++.+++++|.++++++|++..+..+...+
T Consensus 302 ---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~ 347 (355)
T 3beh_A 302 ---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 347 (355)
T ss_dssp -------------------------------------------------------
T ss_pred ---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 34444 78999999999999999999999999999887766554443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=7.9e-32 Score=269.22 Aligned_cols=202 Identities=23% Similarity=0.420 Sum_probs=175.9
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhHhcC
Q 005422 396 QTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRR 475 (697)
Q Consensus 396 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~l~~ 475 (697)
++++++++.+.++|+++++.+++||+++++|++|+.||++|++|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred CccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhh
Q 005422 476 VPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWA 555 (697)
Q Consensus 476 v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 555 (697)
+|+|+++++++++.++..++...|+||++|+++||+++++|||.+|.|+++. +| .+ +..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999985 23 22 6899999999999874
Q ss_pred cCCC--CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 005422 556 LDPR--PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQW 613 (697)
Q Consensus 556 l~~~--~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~ 613 (697)
.+. + ++++++|+++|+++.|++++|.+++.++|++..+.++...+.++...
T Consensus 152 -~~~~~~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 152 -KEQVIK------TNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp -SSSCCB------BCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred -cCCCCC------cceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 332 3 78999999999999999999999999999999888887777665543
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.2e-30 Score=257.70 Aligned_cols=192 Identities=22% Similarity=0.411 Sum_probs=175.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhHhcCCccCC
Q 005422 401 STTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLFD 480 (697)
Q Consensus 401 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~ 480 (697)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567889999999999999999999999999999999999998 5789999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCC
Q 005422 481 QMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRP 560 (697)
Q Consensus 481 ~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 560 (697)
+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++|||.+++. +.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~---~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLT---RER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHH---SSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcC---CCc
Confidence 99999999999999999999999999999999999999999999987 4444 3 68999999999998753 333
Q ss_pred CCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 561 SVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 561 ~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
++++++|.++|+++.|++++|.+++.++|++....++...+
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 78999999999999999999999999999988766665443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2e-30 Score=257.11 Aligned_cols=190 Identities=24% Similarity=0.418 Sum_probs=171.5
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHhcCChhHHHHHHHHHHHhHhcCCccC
Q 005422 400 QSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLKGLPTDLRRDIKRHICLDLVRRVPLF 479 (697)
Q Consensus 400 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F 479 (697)
++++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5788899999999999999999999999999999999999997 588999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCC
Q 005422 480 DQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPR 559 (697)
Q Consensus 480 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 559 (697)
.+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++|||.+++. +.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~---~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLT---RG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHH---CS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhc---CC
Confidence 999999999999999999999999999999999999999999999975 44543 3679999999998753 23
Q ss_pred CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005422 560 PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHK 605 (697)
Q Consensus 560 ~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~ 605 (697)
+ ++++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 191 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 3 789999999999999999999999999998776555443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=3.5e-21 Score=193.87 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEee
Q 005422 84 RWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVI 163 (697)
Q Consensus 84 ~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~ 163 (697)
.||.+++++.++++++.++....+ .+......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~---------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~--------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG--------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH---------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc---------cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc---------------
Confidence 489999999999888777653221 22234567889999999999999999999751
Q ss_pred ChHHHHHHHhhhhHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHHHHHHhhhHHHHHhHhHHHH-HHhhhhhhh
Q 005422 164 DPSKIASRYLKKGFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFIIIFQYLPRLFLIFPLSQQI-INATGVVTE 242 (697)
Q Consensus 164 d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~q~l~Rl~ri~~l~~~i-~~~~~~~~~ 242 (697)
+ +++|+|+ +++|+++++|+..... +. .........+.+|++| +.|++|+.+..++. .........
T Consensus 65 ~----~~~y~~~-~iiDllailP~~~~~~----~~-~~~~~~~~lr~lRllR----llR~~r~~~~~~~~~~~l~~~~~~ 130 (223)
T 1orq_C 65 D----PAGYVKK-TLYEIPALVPAGLLAL----IE-GHLAGLGLFRLVRLLR----FLRILLIISRGSKFLSAIADAADK 130 (223)
T ss_dssp C----HHHHHHH-HHHHCTTHHHHHHHHH----HH-HHHHTTTCHHHHHHHH----HHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred c----HHHHHHH-hHHHHHHHHHHHHHHH----Hh-cchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3799998 9999999999876542 00 0000012233333332 33444443322111 111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCccccccCCCCCCCcccccccccccccCCCCCC
Q 005422 243 TAWAGAAYNLVLFMLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYFDCHKVEDPNRESWFKFSNITSLCDPNNV 322 (697)
Q Consensus 243 ~~~~~~~~~l~~~~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~~~~~~~~~~~~~W~~~~~l~~~c~~~~~ 322 (697)
. +....+++.++..|+.||++|.+.. ++.++|
T Consensus 131 ~---~l~~~~~~~~~~~~~~~~~~~~~e~------------------------------~~~~~~--------------- 162 (223)
T 1orq_C 131 I---RFYHLFGAVMLTVLYGAFAIYIVEY------------------------------PDPNSS--------------- 162 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHTTS------------------------------SSTTCS---------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHh------------------------------CCcCCC---------------
Confidence 1 1222333344578888998887521 001111
Q ss_pred CCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 323 SSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 323 ~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
...|..|+||++.|+||+||||++|.+..|++++++++++|+.++|+.+|++++.+++
T Consensus 163 ---------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 163 ---------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp ---------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1257889999999999999999999999999999999999999999999999998875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=2.4e-19 Score=169.56 Aligned_cols=144 Identities=21% Similarity=0.390 Sum_probs=120.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe
Q 005422 449 EEVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT 528 (697)
Q Consensus 449 e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~ 528 (697)
.+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005422 529 NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHK 605 (697)
Q Consensus 529 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~ 605 (697)
+ .+ +..+++|++||+.+++.. .+.+ ++++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 85 --~--~~--~~~~~~G~~fG~~~~~~~-~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--EV--VAILGKGDVFGDVFWKEA-TLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--EE--EEEEETTCEEECCTTTCS-SCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--EE--EEEecCCCEeCcHHHhcC-cccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23 689999999999987421 1123 789999999999999999999999999999887766654
No 7
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.77 E-value=2.3e-18 Score=168.49 Aligned_cols=178 Identities=11% Similarity=0.074 Sum_probs=119.5
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 548 (697)
..++++++.|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.||++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 45677889999999999999999999999999999999999999999999999999885 4677776 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRY 628 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~ 628 (697)
|...+. .+.+ ++++++|+++|+++.|++++|.+++.++|++....++. +.......
T Consensus 84 e~~~~~--~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----------------~~~~l~~~ 139 (194)
T 3dn7_A 84 DYMAFQ--KQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLV----------------YQKSFAAA 139 (194)
T ss_dssp CHHHHH--HTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHH----------------HHHHHHHH
T ss_pred ehHHHh--cCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHH----------------HHHHHHHH
Confidence 874432 2333 78999999999999999999999999999776644333 33344455
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCC
Q 005422 629 KKRKEAAELRAKENIPAEPDSPQPPSGLSIYAARLSASTRRANKHSR 675 (697)
Q Consensus 629 ~~r~~~~~~~~~eery~~~~~~~~~l~~~i~~~~~a~~~~~~~~~~~ 675 (697)
.++.......++++|+..+....|.+...++...+|+ +.|+.|..
T Consensus 140 ~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~--~lG~sret 184 (194)
T 3dn7_A 140 QLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLAS--YLGFTPEY 184 (194)
T ss_dssp HHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHH--HhCCCHHH
Confidence 6677777888999999988888887766666666655 56665544
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.75 E-value=1.2e-17 Score=187.56 Aligned_cols=294 Identities=17% Similarity=0.222 Sum_probs=150.4
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHhhhhhccccccccce-----e-------------eecCCCchhhHHHHHHHHHHHH
Q 005422 76 DPR-GPAIRRWNKIFLVACLVSLFVDPLFFYLPVVRHEV-----C-------------IDIGIPLEVILTIIRTLGDAFY 136 (697)
Q Consensus 76 ~P~-s~~~~~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~i~d~~f 136 (697)
+|. |....+|+.++++++++++++..+.-+ |...... + ..........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 567788899888888888887766532 2111000 0 0000113456789999999999
Q ss_pred HHHHhhheeEEEEcCCCcccCCCeEeeChHHHHHHHhhh-hHHHHhhhccCchhhhhheeccCCCCchhhhhhHHHHHHH
Q 005422 137 IIQIYIRFRTAYVAPSSRVFGRGELVIDPSKIASRYLKK-GFWIDFVAALPLPQVLIWFIIPNLRGSTMRNTKNVLRFII 215 (697)
Q Consensus 137 ~iDi~l~f~t~y~~~~s~~~~~G~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~ 215 (697)
.+|++++|.++ +. .++|+++ |.++|+++++|+...+..... ...+.........+|++|
T Consensus 253 tiE~ilR~~~~---~~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~-~~~~~~~~~~~~~lrvlR 312 (514)
T 2r9r_B 253 SFEFLVRFFAC---PS----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTES-NKSVLQFQNVRRVVQIFR 312 (514)
T ss_dssp HHHHHHHHHHS---SC----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT-SCSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHhC---Cc----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhc-cccchhhhhHHHHHHHHH
Confidence 99999999864 11 1479999 899999999998654332110 001110011133444444
Q ss_pred HHHhhhHHHHHhHhHHHHHHhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhHHHHhhhccCCCCCCcccc
Q 005422 216 IFQYLPRLFLIFPLSQQIINATGVVTETAWAGAAYNLVLF-MLASHVLGACWYLLSIERQEACWRSVCNSEKPSCQYGYF 294 (697)
Q Consensus 216 l~q~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~l~~~-~l~~H~~~c~wyli~~~~~~~cw~~~c~~~~~~c~~~y~ 294 (697)
+++ +.|++|+.+..+.+......+... ...+..++++ ++..+++||++|++-.
T Consensus 313 llR-vlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e~----------------------- 366 (514)
T 2r9r_B 313 IMR-ILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAEA----------------------- 366 (514)
T ss_dssp HHG-GGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHH-HHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheeec-----------------------
Confidence 443 444444444333333222222211 1122223332 3457778887775420
Q ss_pred ccCCCCCCCcccccccccccccCCCCCCCCccccchhhccccCccCcchHHHHHHHHHHHHHhcccccCCCcccCchhHH
Q 005422 295 DCHKVEDPNRESWFKFSNITSLCDPNNVSSYKFGIYADAITFDVTTAPFFNKYFYCLWWGLKNLSSVGQNLATSTYVGEI 374 (697)
Q Consensus 295 ~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Y~~slywal~tlstvG~gd~~~~~~~E~ 374 (697)
....+| +..|..|+||++.|+||+||||+.|.+..++
T Consensus 367 -------~~~~~~------------------------------------F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr 403 (514)
T 2r9r_B 367 -------DERDSQ------------------------------------FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403 (514)
T ss_dssp -------TCTTCS------------------------------------CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHH
T ss_pred -------cCCCcc------------------------------------ccchhhhhheeeeEEEecccCCCCCCCcchH
Confidence 001111 2346789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 005422 375 IFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEVLLK 454 (697)
Q Consensus 375 ~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~ 454 (697)
+++++++++|++++++.+|.+.+.++....+..+ ++..+..++++.-...|.....+ + ...+...++.-..
T Consensus 404 ~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~~~s~~~ 474 (514)
T 2r9r_B 404 IVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSASTISKSDYM 474 (514)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred hhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCCccccccc
Confidence 9999999999999999999999888776653332 11122223333333333322211 1 1122334455556
Q ss_pred cCChhHHHHHHHHH
Q 005422 455 GLPTDLRRDIKRHI 468 (697)
Q Consensus 455 ~Lp~~Lr~~i~~~l 468 (697)
+|...++.++....
T Consensus 475 el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 475 EIQEGVNNSNEDFR 488 (514)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 77777776665443
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.74 E-value=3.3e-17 Score=159.93 Aligned_cols=154 Identities=19% Similarity=0.335 Sum_probs=129.4
Q ss_pred CHHHHHhcCChhH----HHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeE
Q 005422 448 DEEVLLKGLPTDL----RRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHL 523 (697)
Q Consensus 448 ~e~~il~~Lp~~L----r~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v 523 (697)
.+....+.++|++ +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 3456666666654 233444556789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHH
Q 005422 524 DSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQL 602 (697)
Q Consensus 524 ~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l 602 (697)
+++..+ +|++.+ +..+.+|++||+.+++ .+.+ ++++++|+++|+++.|++++|.+++.++|++..+++
T Consensus 92 ~v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 92 NVIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEEETTTEEEE--EEEEETTCEESHHHHH---HCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEECCCCCeEE--EEEccCCCeeeeHHHh---CCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 998754 677766 6899999999999974 3333 789999999999999999999999999999988887
Q ss_pred HHHHHhhhhh
Q 005422 603 RHKFRFYSHQ 612 (697)
Q Consensus 603 ~~~~r~~s~~ 612 (697)
+...+..++.
T Consensus 161 ~~l~~~l~~r 170 (187)
T 3gyd_A 161 IRLLQLLTAR 170 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666554443
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.73 E-value=2.3e-17 Score=152.40 Aligned_cols=133 Identities=14% Similarity=0.290 Sum_probs=111.9
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeee-eeeeecCCCCee
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGF-FNSCRIGPGDFC 547 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~-~~~~~l~~Gd~f 547 (697)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ ..+..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 457899999999999999999999999999999999999999999999999999998644 343322 014689999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
|+.++ +.+.+ ++.+++|.++|+++.|++++|.+++.++|++..++++...+..++
T Consensus 85 G~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99887 34444 788999999999999999999999999999998888777665544
No 11
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.5e-17 Score=153.73 Aligned_cols=131 Identities=16% Similarity=0.288 Sum_probs=113.3
Q ss_pred cCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeee
Q 005422 455 GLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTG 534 (697)
Q Consensus 455 ~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~ 534 (697)
++|..+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999954 443
Q ss_pred eeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHH
Q 005422 535 FFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600 (697)
Q Consensus 535 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~ 600 (697)
+ +..+.+|++||+.+++ .+.+ ++++++|+++|+++.|++++|.+++.++|.+..+
T Consensus 83 ~--~~~~~~G~~fGe~~~l---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHHH---CCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 6899999999999874 2333 7899999999999999999999999999977654
No 12
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.72 E-value=2.2e-16 Score=156.82 Aligned_cols=134 Identities=18% Similarity=0.275 Sum_probs=114.4
Q ss_pred hcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhh
Q 005422 473 VRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEEL 551 (697)
Q Consensus 473 l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 551 (697)
|+++|+|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46889999999999999999999999999999999999999999999999999875 4677666 68999999999988
Q ss_pred HhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHH
Q 005422 552 LTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWA 617 (697)
Q Consensus 552 l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~ 617 (697)
++ .+.+ ++.+++|.++|+++.|++++|.+++.++|++....++...+.+....+...
T Consensus 79 ~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~ 135 (216)
T 4ev0_A 79 LL---DEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELD 135 (216)
T ss_dssp HH---HCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc---CCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 3333 789999999999999999999999999999988887777665554433333
No 13
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.71 E-value=2.4e-17 Score=156.40 Aligned_cols=127 Identities=19% Similarity=0.280 Sum_probs=113.9
Q ss_pred HHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecC
Q 005422 463 DIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIG 542 (697)
Q Consensus 463 ~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 542 (697)
+..+....++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++...+|++.+ +..+.
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~ 107 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 107 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcC
Confidence 3444556789999999999999999999999999999999999999999999999999999999877788777 78999
Q ss_pred CCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHH
Q 005422 543 PGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600 (697)
Q Consensus 543 ~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~ 600 (697)
+|++||+.++ +.+.+ ++++++|+++|+++.|++++|.+++.++|.+..+
T Consensus 108 ~G~~fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 108 NRGSFGELAL---MYNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp SCCEECGGGG---TCCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred CCCEechHHH---HcCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 9999999988 34444 7899999999999999999999999999976543
No 14
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.71 E-value=9.4e-18 Score=154.43 Aligned_cols=130 Identities=72% Similarity=1.150 Sum_probs=108.6
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|++....+|++.++.+..+.+|++|||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecH
Confidence 35688999999999999999999999999999999999999999999999999997655667766622339999999999
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHH
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHS 599 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~ 599 (697)
.++++.+.+.+.++.|.++++++|+++|+++.|++++|.+++.++|++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 98622244433222223689999999999999999999999999997654
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.71 E-value=1e-16 Score=149.15 Aligned_cols=124 Identities=28% Similarity=0.461 Sum_probs=110.0
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 467899999999999999999999999999999999999999999999999999998754 566666 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRH 604 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~ 604 (697)
+.++ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++.
T Consensus 82 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSL---FDPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGG---TSCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHh---cCCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 9887 33333 78999999999999999999999999999876655443
No 16
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.68 E-value=9.9e-16 Score=152.54 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=115.1
Q ss_pred hHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCe--e
Q 005422 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDF--C 547 (697)
Q Consensus 471 ~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~--f 547 (697)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..++||++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5789999999999999999999999999999999999999999999999999999875 4577766 689999999 7
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQW 613 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~ 613 (697)
|+.++ +.+.+ ++.+++|+++|+++.|++++|.+++.++|++....++...+.+....
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 137 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVM 137 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 88887 44444 78999999999999999999999999999998887776666554433
No 17
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.67 E-value=4.5e-16 Score=156.07 Aligned_cols=136 Identities=24% Similarity=0.402 Sum_probs=118.6
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 457899999999999999999999999999999999999999999999999999998764 577766 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHH
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTW 616 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~ 616 (697)
+.+++ .+.+ ++++++|+++|+++.|++++|.+++.++|++....++...+.+....+..
T Consensus 83 ~~~~~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 141 (227)
T 3d0s_A 83 ELSIF---DPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNL 141 (227)
T ss_dssp CHHHH---SCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHc---CCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 99874 3344 78999999999999999999999999999999888777666555433333
No 18
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.67 E-value=4.7e-16 Score=145.60 Aligned_cols=128 Identities=14% Similarity=0.232 Sum_probs=108.8
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
.++++++++|..++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 467899999999999999999999999999999999999999999999999999998754 466655 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
+.+++ .+.+ .+..+++|.++|+++.|++++|.+++.++|++...+++...+
T Consensus 89 ~~~~~---~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGG---SSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhc---cCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99874 2221 268899999999999999999999999999887766655443
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.67 E-value=4.4e-16 Score=157.18 Aligned_cols=132 Identities=13% Similarity=0.183 Sum_probs=117.1
Q ss_pred HHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCee
Q 005422 469 CLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 469 ~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~f 547 (697)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 457899999999999999999999999999999999999999999999999999999885 4677766 6899999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
|+.+++ .+.+ ++++++|+++|+++.|++++|.+++.++|++....++...+.+..
T Consensus 87 G~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 141 (237)
T 3fx3_A 87 GEAVAL---RNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHS 141 (237)
T ss_dssp CHHHHH---HTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHh---cCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999985 2333 789999999999999999999999999999988777766654443
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.66 E-value=1.4e-15 Score=152.87 Aligned_cols=131 Identities=16% Similarity=0.263 Sum_probs=115.7
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998754 677766 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
+.++ +.+.+ ++.+++|+++|+++.|++++|.+++.++|++....++...+.+..
T Consensus 83 ~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 136 (231)
T 3e97_A 83 ETAV---LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF 136 (231)
T ss_dssp TTTT---TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eHHH---hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9987 34444 789999999999999999999999999999998887776665544
No 21
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.66 E-value=7.1e-16 Score=141.81 Aligned_cols=124 Identities=26% Similarity=0.472 Sum_probs=108.7
Q ss_pred HHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 469 CLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 469 ~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3568999999999999999999999999999999999999999999999999999997543 1 3789999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
+.+++ .+.+ ++.+++|.++|+++.|++++|.+++.++|++....++...+.+
T Consensus 81 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 81 EMALI---SGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHHH---HCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred ehHhc---cCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 99874 3333 6899999999999999999999999999998877766655543
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.65 E-value=2.7e-15 Score=150.43 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=104.4
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+++.++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 45788999999999999999999999999999999999999999999999999999875 4677766 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHh-----HHHHHHHHHHHHHhhhh
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQF-----RRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~-----p~l~~~~l~~~~r~~s~ 611 (697)
+..++ .+.+ .++++++|.++|+++.|++++|.+++.++ |++....++...+.+..
T Consensus 88 ~~~~~---~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~ 147 (230)
T 3iwz_A 88 EMGLF---IESD-----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLD 147 (230)
T ss_dssp CGGGT---SCCS-----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred ehhhh---cCCC-----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 99884 3221 16889999999999999999999999999 98887777666554433
No 23
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.3e-15 Score=152.58 Aligned_cols=133 Identities=14% Similarity=0.219 Sum_probs=116.0
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 548 (697)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 46789999999999999999999999999999999999999999999999999999874 4566666 68999999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQ 612 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~ 612 (697)
+.+++ .+.+ .++.+++|.++|+++.|++++|.+++.++|.+....++...+.+...
T Consensus 86 ~~~~~---~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 141 (227)
T 3dkw_A 86 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQR 141 (227)
T ss_dssp CTTTT---TTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHH
T ss_pred eHHhc---CCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 98873 3222 26789999999999999999999999999999888777766655443
No 24
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.63 E-value=1.5e-15 Score=142.91 Aligned_cols=118 Identities=19% Similarity=0.360 Sum_probs=104.6
Q ss_pred HHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCe
Q 005422 467 HICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDF 546 (697)
Q Consensus 467 ~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 546 (697)
....++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ . +..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~--~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--E--EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--E--EEEecCCCE
Confidence 3456789999999999999999999999999999999999999999999999999999986 343 2 578999999
Q ss_pred ecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHH
Q 005422 547 CGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHS 599 (697)
Q Consensus 547 fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~ 599 (697)
||+.+++. +.+ ++++++|+++|+++.|++++|.+++.++|.+..
T Consensus 108 fGe~~~~~---~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALIY---GTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHHH---CCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhhc---CCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 99998853 333 789999999999999999999999999996654
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.63 E-value=3.4e-15 Score=150.11 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=113.0
Q ss_pred cCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhH
Q 005422 474 RRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELL 552 (697)
Q Consensus 474 ~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 552 (697)
..+|+|..++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 36799999999999999999999999999999999999999999999999998644 566666 689999999999987
Q ss_pred hhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHH
Q 005422 553 TWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWA 617 (697)
Q Consensus 553 ~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~ 617 (697)
+ .+.+ ++++++|+++|+++.|++++|.+++.++|++....++...+.+....+...
T Consensus 91 ~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~ 146 (232)
T 2gau_A 91 F---AEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTV 146 (232)
T ss_dssp H---HTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2333 789999999999999999999999999999998888877765555444443
No 26
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.62 E-value=1.9e-15 Score=150.25 Aligned_cols=173 Identities=10% Similarity=0.055 Sum_probs=105.2
Q ss_pred CccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhh
Q 005422 476 VPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTW 554 (697)
Q Consensus 476 v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~ 554 (697)
-|.|+..+++..+.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 47888899999999999999999999999999999999999999999999875 4677766 6899999999999874
Q ss_pred hcCCC-CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005422 555 ALDPR-PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKE 633 (697)
Q Consensus 555 ~l~~~-~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~ 633 (697)
.+. + +..+++|+++|+++.|++++|.+++.++|++...+++...+... ...++..
T Consensus 81 --~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~----------------~~~~~~~ 136 (213)
T 1o5l_A 81 --SSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFR----------------VVSEKLF 136 (213)
T ss_dssp --SSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_pred --cCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence 322 3 78999999999999999999999999999987766655444222 2334444
Q ss_pred HHHHHHhhcCCCCCCCCCCCC--chhHHHHHHHHHHHhhcccCC
Q 005422 634 AAELRAKENIPAEPDSPQPPS--GLSIYAARLSASTRRANKHSR 675 (697)
Q Consensus 634 ~~~~~~~eery~~~~~~~~~l--~~~i~~~~~a~~~~~~~~~~~ 675 (697)
.....++++|+..+....+.- ...+++++-.-+.+-|+.|..
T Consensus 137 ~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~t 180 (213)
T 1o5l_A 137 FLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPA 180 (213)
T ss_dssp HHHCC---------------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHH
Confidence 555566777776444333311 123333333334455655543
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.62 E-value=3.9e-15 Score=155.88 Aligned_cols=141 Identities=13% Similarity=0.249 Sum_probs=121.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec
Q 005422 450 EVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN 529 (697)
Q Consensus 450 ~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~ 529 (697)
.....++|+..|.+...+...++++++++|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 445568999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005422 530 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHK 605 (697)
Q Consensus 530 ~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~ 605 (697)
+|. . +..+.+|++|||.+++ .+.+ +++|++|.++|+++.|++++|.+++.++|..........
T Consensus 96 ~g~--~--~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~ 158 (299)
T 3shr_A 96 EGV--K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEF 158 (299)
T ss_dssp TTE--E--EEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCE--E--EEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHH
Confidence 333 2 6799999999999874 3344 789999999999999999999999999997655444433
No 28
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=2.6e-15 Score=151.41 Aligned_cols=132 Identities=12% Similarity=0.175 Sum_probs=114.6
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhc--ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCC
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICER--LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPG 544 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~--l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~G 544 (697)
.....++++|+|..+++++++.++.. ++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+.+|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34567899999999999999999998 99999999999999999999999999999999874 4667766 6899999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
++||+.+++ .+.+ .+.++++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 93 ~~fG~~~~~---~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 149 (232)
T 1zyb_A 93 YLIEPQSLF---GMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA 149 (232)
T ss_dssp EEECGGGGS---SSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred CeeeehHHh---CCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999874 3321 26889999999999999999999999999998887766655533
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.61 E-value=3.8e-15 Score=148.61 Aligned_cols=129 Identities=6% Similarity=0.128 Sum_probs=114.2
Q ss_pred hHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHh
Q 005422 471 DLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEE 550 (697)
Q Consensus 471 ~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 550 (697)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++...+|++.+ +..+.+|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46889999999999999999999999999999999999999999999999999997666788777 789999999998
Q ss_pred hHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhHHHH
Q 005422 551 LLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWA 617 (697)
Q Consensus 551 ~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~ 617 (697)
+ ++++++|+++|+++.|++++|.+++.++|++....++...+.+....+...
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 132 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIIN 132 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 678999999999999999999999999999998887776665554433333
No 30
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.60 E-value=1.3e-14 Score=143.42 Aligned_cols=124 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred ccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhh
Q 005422 477 PLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWA 555 (697)
Q Consensus 477 ~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 555 (697)
++++.++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+.+|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 4567799999999999999999999999999999999999999999999875 5677766 6899999999999874
Q ss_pred cCCC-CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 556 LDPR-PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 556 l~~~-~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
.+. + ++++++|+++|+++.|++++|.+++.++|++....++...+.+..
T Consensus 78 -~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 127 (210)
T 3ryp_A 78 -EEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV 127 (210)
T ss_dssp -STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred -cCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 332 3 789999999999999999999999999999988777766654443
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.59 E-value=6.8e-15 Score=156.54 Aligned_cols=127 Identities=18% Similarity=0.294 Sum_probs=111.0
Q ss_pred HhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecH
Q 005422 470 LDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGE 549 (697)
Q Consensus 470 ~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 549 (697)
.++|+++|+|++++++++..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+++.+ +..+.+|++|||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAI--IARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEE--EEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEE--EEEecCCCEeeH
Confidence 467899999999999999999999999999999999999999999999999999998765433334 689999999999
Q ss_pred hhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005422 550 ELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRF 608 (697)
Q Consensus 550 ~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~ 608 (697)
.+++. +.+ ++.+++|+++|+++.|++++|.+++ ++|.+..++++...+.
T Consensus 90 ~~l~~---~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 90 IALLR---DSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHH---TCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHhcC---CCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 98753 333 7899999999999999999999999 9998887766655443
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=2.1e-14 Score=141.48 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=103.9
Q ss_pred ccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCC-
Q 005422 482 MDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPR- 559 (697)
Q Consensus 482 l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~- 559 (697)
|+++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||+.+++ .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 588999999999999999999999999999999999999999998754 577766 7899999999999874 332
Q ss_pred ---CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 560 ---PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 560 ---~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
+ ++++++|+++|+++.|++++|.+++.++|++...+++...+.+..
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~ 124 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRK 124 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 3 789999999999999999999999999999988777766654444
No 33
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.58 E-value=7.6e-15 Score=146.74 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=109.7
Q ss_pred HhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhh
Q 005422 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEEL 551 (697)
Q Consensus 472 ~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 551 (697)
+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++...+|++.+ +..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 4678999999999999999999999999999999999999999999999999998666788777 78999999999
Q ss_pred HhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 005422 552 LTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQ 612 (697)
Q Consensus 552 l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~ 612 (697)
. + ++++++|+++|+++.|++++|.+++.++|.+....++...+.+...
T Consensus 76 -----~--~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 123 (222)
T 1ft9_A 76 -----M--H------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSC 123 (222)
T ss_dssp -----S--C------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred -----C--C------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 1 2 6899999999999999999999999999999888777766654443
No 34
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=140.25 Aligned_cols=124 Identities=14% Similarity=0.270 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEec-CCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeee
Q 005422 457 PTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCT-EGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGF 535 (697)
Q Consensus 457 p~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~-kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~ 535 (697)
||+.|.+.......++++++++|..++++.++.++..++.+.|+ +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44444444444556788999999999999999999999999999 999999999999999999999999985 44443
Q ss_pred eeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEE-EEcccEEEEEecHHHHHHHHHHhH
Q 005422 536 FNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTV-KSISEVEAFALRADDLKFVASQFR 595 (697)
Q Consensus 536 ~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv-~A~t~~el~~L~~~df~~l~~~~p 595 (697)
..+.+|++||+.++ +.+.+ +..++ +|.++|+++.|++++|.+++.+++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45889999999887 44433 56788 999999999999999999987755
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.56 E-value=3.6e-14 Score=145.75 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=103.2
Q ss_pred CcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCC
Q 005422 480 DQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDP 558 (697)
Q Consensus 480 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 558 (697)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.+++ .+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---CC
Confidence 5589999999999999999999999999999999999999999999875 4677766 7899999999999874 33
Q ss_pred C-CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 559 R-PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 559 ~-~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
. + ++++++|+++|+++.|++++|.+++.++|++...+++...+.+..
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~ 177 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV 177 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 3 3 789999999999999999999999999999988777766654443
No 36
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=8.4e-15 Score=153.32 Aligned_cols=130 Identities=18% Similarity=0.389 Sum_probs=114.4
Q ss_pred HHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec--CCeeeeeeeeecCCC
Q 005422 467 HICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN--GGRTGFFNSCRIGPG 544 (697)
Q Consensus 467 ~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 544 (697)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998865 566655 6899999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
++|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++...+
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 284 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEA 284 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhh
Confidence 99999987 44444 78999999999999999999999999999887766555443
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.54 E-value=5e-14 Score=146.63 Aligned_cols=126 Identities=20% Similarity=0.380 Sum_probs=109.7
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CC-eeeeeeeeecCCCC
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GG-RTGFFNSCRIGPGD 545 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g-~~~~~~~~~l~~Gd 545 (697)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... +| ++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 34567788999999999999999999999999999999999999999999999999998643 33 3344 68999999
Q ss_pred eecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005422 546 FCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRH 604 (697)
Q Consensus 546 ~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~ 604 (697)
+|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 232 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 232 YFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp EECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred EecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 9999988 44444 78999999999999999999999999999887665554
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=8.8e-14 Score=144.76 Aligned_cols=127 Identities=19% Similarity=0.325 Sum_probs=112.2
Q ss_pred HHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCC
Q 005422 466 RHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGD 545 (697)
Q Consensus 466 ~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 545 (697)
.+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|. . +..+.+|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCCC
Confidence 44567889999999999999999999999999999999999999999999999999999987 343 2 68999999
Q ss_pred eecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005422 546 FCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFR 607 (697)
Q Consensus 546 ~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r 607 (697)
+|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|.+..+.++...+
T Consensus 108 ~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999887 44444 78999999999999999999999999999887776665554
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.5e-14 Score=143.58 Aligned_cols=118 Identities=18% Similarity=0.290 Sum_probs=105.5
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456778899999999999999999999999999999999999999999999999999876554 2 6899999999
Q ss_pred cHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHH
Q 005422 548 GEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHS 599 (697)
Q Consensus 548 Ge~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~ 599 (697)
||.+++. ..| ++++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~~---~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALLN---DLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHHH---TCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHhC---CCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9999853 333 789999999999999999999999999997654
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.52 E-value=5.4e-14 Score=154.52 Aligned_cols=127 Identities=19% Similarity=0.271 Sum_probs=113.7
Q ss_pred HHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecC
Q 005422 463 DIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIG 542 (697)
Q Consensus 463 ~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 542 (697)
+-......++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...+|++.+ +..+.
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEec
Confidence 3345566789999999999999999999999999999999999999999999999999999999877777776 68999
Q ss_pred CCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHH
Q 005422 543 PGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSK 600 (697)
Q Consensus 543 ~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~ 600 (697)
+|++|||.+++ ...+ +++|++|.++|+++.|++++|..++.++|....+
T Consensus 215 ~G~~fGe~all---~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 215 NRGSFGELALM---YNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp SCCEECGGGGT---SCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred CCCEEeeHHHh---cCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 99999999884 4444 7999999999999999999999999999976543
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.4e-14 Score=143.64 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=105.2
Q ss_pred HHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 469 CLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 469 ~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 35688999999999999999999999999999999999999999999999999999975 3332 57899999999
Q ss_pred HhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005422 549 EELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLR 603 (697)
Q Consensus 549 e~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~ 603 (697)
|.+++. ..+ ++++++|.++|+++.|++++|..++.++|........
T Consensus 79 e~~l~~---~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (246)
T 3of1_A 79 ELALMY---NSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYD 124 (246)
T ss_dssp HHHHHH---TCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSH
T ss_pred hhHHhc---CCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHH
Confidence 998853 333 7899999999999999999999999999966554433
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=153.64 Aligned_cols=129 Identities=17% Similarity=0.321 Sum_probs=111.5
Q ss_pred HHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCe-eeeeeeeecCCC
Q 005422 467 HICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGR-TGFFNSCRIGPG 544 (697)
Q Consensus 467 ~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~-~~~~~~~~l~~G 544 (697)
.++..+++++++|..++++.+..++..++...|++|++|+++||+++.+|||.+|.|+++..+ +|+ ... +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 345567888999999999999999999999999999999999999999999999999998754 233 333 6899999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKF 606 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~ 606 (697)
++|||.+++ ...+ ++++++|.++|+++.|++++|.+++..+|++..+.+++.-
T Consensus 322 d~fGe~all---~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~ 374 (381)
T 4din_B 322 DYFGEIALL---LNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYN 374 (381)
T ss_dssp CEECTTGGG---SCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHH
T ss_pred CEechHHHh---CCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999984 4444 7899999999999999999999999999988776655433
No 43
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.48 E-value=9.8e-14 Score=130.43 Aligned_cols=64 Identities=16% Similarity=0.350 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEW 409 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~ 409 (697)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+.+|.+.+.+.+...+.++.
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999998776654433
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=148.34 Aligned_cols=127 Identities=17% Similarity=0.303 Sum_probs=110.5
Q ss_pred HHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCC
Q 005422 465 KRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPG 544 (697)
Q Consensus 465 ~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 544 (697)
.+....++++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ . +..+.+|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~--v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--W--VTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--E--EEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--E--eeeCCCC
Confidence 345567889999999999999999999999999999999999999999999999999999986 333 2 5789999
Q ss_pred CeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005422 545 DFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKF 606 (697)
Q Consensus 545 d~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~ 606 (697)
++|||.+++ .+.| +++|++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 198 ~~fGe~all---~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L 250 (381)
T 4din_B 198 GSFGELALI---YGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250 (381)
T ss_dssp CCBCGGGGT---SCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEchHHh---cCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHh
Confidence 999999884 4444 7899999999999999999999999999987665544433
No 45
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.46 E-value=3.6e-13 Score=137.13 Aligned_cols=127 Identities=9% Similarity=0.113 Sum_probs=108.8
Q ss_pred HhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHh
Q 005422 472 LVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEE 550 (697)
Q Consensus 472 ~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~ 550 (697)
++.++..+..+++++++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 344455558999999999999999999999999999999999999999999999875 5677766 789999999999
Q ss_pred hHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 005422 551 LLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQ 612 (697)
Q Consensus 551 ~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~ 612 (697)
+ +.+ . ++.+++|+++|+++.|++++|.+++.++|++....++...+.+...
T Consensus 87 -~---l~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~ 137 (250)
T 3e6c_C 87 -L---YPT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYY 137 (250)
T ss_dssp -C---SCC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred -e---cCC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 3 222 1 5789999999999999999999999999999888877766655543
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.46 E-value=8e-14 Score=153.16 Aligned_cols=125 Identities=11% Similarity=0.277 Sum_probs=106.6
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecC-------Ceeeeeeeee
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNG-------GRTGFFNSCR 540 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-------g~~~~~~~~~ 540 (697)
++..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+. |++.. +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 345678899999999999999999999999999999999999999999999999999986543 55555 689
Q ss_pred cCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005422 541 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLR 603 (697)
Q Consensus 541 l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~ 603 (697)
+++|++|||.++ +...+ ++++|+|+++|+++.|++++|.+++.++|++..+.++
T Consensus 342 l~~G~~fGE~al---l~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~ 395 (416)
T 3tnp_B 342 CFRGQYFGELAL---VTNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA 395 (416)
T ss_dssp ECTTCEESGGGG---TCCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--
T ss_pred eCCCCEecHHHH---hCCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHH
Confidence 999999999998 44444 8999999999999999999999999999987654443
No 47
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.45 E-value=7.6e-13 Score=123.94 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhHhHHHHHHHHHHH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQT------YLQS----TTIRLEEWRIKRTDT 416 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~------~l~~----~~~~~~e~~~k~~~~ 416 (697)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|++.. +.+. .+.+..+.+++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999886 3332 345556677788999
Q ss_pred HHHHHhCCCChhHHHH
Q 005422 417 EQWMHHRQLPPELRQS 432 (697)
Q Consensus 417 ~~~m~~~~lp~~L~~r 432 (697)
+++|+.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 48
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.45 E-value=1.8e-12 Score=130.90 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=100.6
Q ss_pred CcccHHHHHHHHh--cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhc
Q 005422 480 DQMDERMLDAICE--RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWAL 556 (697)
Q Consensus 480 ~~l~~~~l~~l~~--~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l 556 (697)
++++++.++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3678999999885 589999999999999999999999999999999875 4677766 5678 99999999874
Q ss_pred CCCCCCCCCCcceEEEEc-ccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 005422 557 DPRPSVILPSSTRTVKSI-SEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSHQW 613 (697)
Q Consensus 557 ~~~~~~~~~~s~~tv~A~-t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~~~ 613 (697)
.+.+ +.+.+++.|+ ++|+++.|++++|.+++.++|++....++...+.+....
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 129 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSL 129 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 3322 0025778888 599999999999999999999999888877666554433
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=4.5e-13 Score=149.35 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=118.9
Q ss_pred CChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCe--
Q 005422 456 LPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGR-- 532 (697)
Q Consensus 456 Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~-- 532 (697)
.|+..|.+.......+.++++++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 57777888778888899999999999999999999999999999999999999999999999999999998754 443
Q ss_pred eeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005422 533 TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLR 603 (697)
Q Consensus 533 ~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~ 603 (697)
+.+ +..+++|++|||.+ +. +.+ ++++++|.++|+++.|++++|.+++.++|++...+++
T Consensus 107 ~~~--~~~~~~G~~fGe~~-l~---~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 107 AVT--ICTLGIGTAFGESI-LD---NTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp CEE--EEEECTTCEECGGG-GG---TCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred ceE--EEEccCCCCcchhh-hC---CCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 244 68999999999987 42 223 7899999999999999999999999999987655544
No 50
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.43 E-value=1.8e-12 Score=131.54 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=100.1
Q ss_pred HHHHHHHHhccc---ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCCC
Q 005422 484 ERMLDAICERLK---PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDPR 559 (697)
Q Consensus 484 ~~~l~~l~~~l~---~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 559 (697)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.+++ .+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 677888888888 999999999999999999999999999999875 4677766 6899999999998874 322
Q ss_pred CCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005422 560 PSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYSH 611 (697)
Q Consensus 560 ~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s~ 611 (697)
+. .+.++++|+++|+++.|++++|.+++.++|++...+++...+.+..
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 152 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQ 152 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 20 1458999999999999999999999999999988877766554443
No 51
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.42 E-value=2.4e-13 Score=125.36 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHhCCCC
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEWRIKRTDTEQWMHHRQLP 426 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp 426 (697)
|..|+||++.|+||+||||++|.|..|++++++++++|++++|+++|.+++.+.....+.++.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 67899999999999999999999999999999999999999999999999998776655544443333333344445666
Q ss_pred hhHHHHHHHHHH
Q 005422 427 PELRQSVRKYDQ 438 (697)
Q Consensus 427 ~~L~~rVr~y~~ 438 (697)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=6e-13 Score=148.31 Aligned_cols=121 Identities=14% Similarity=0.262 Sum_probs=103.6
Q ss_pred HHHHhHhcCCccCCcccHHHHHHHHhcccc-eEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCC
Q 005422 467 HICLDLVRRVPLFDQMDERMLDAICERLKP-ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGD 545 (697)
Q Consensus 467 ~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 545 (697)
....+.++++++|.+++++.+..++..+.. +.|++|++|+++||+++.+|||.+|.|+++..++ .+ +..+.+|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GV--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EE--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---ee--EEEecCCC
Confidence 345678999999999999999999999985 4899999999999999999999999999986432 23 68999999
Q ss_pred eecHhhHhhhcCCCCCCCCCCcceEEEEcc-cEEEEEecHHHHHHHHHHhHHHHHHH
Q 005422 546 FCGEELLTWALDPRPSVILPSSTRTVKSIS-EVEAFALRADDLKFVASQFRRLHSKQ 601 (697)
Q Consensus 546 ~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t-~~el~~L~~~df~~l~~~~p~l~~~~ 601 (697)
+|||.++ +.+.+ ++++++|++ +|+++.|++++|.+++.++|++..++
T Consensus 408 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp EECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred EEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 9999988 44444 899999998 79999999999999999999776544
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.33 E-value=6.7e-12 Score=113.36 Aligned_cols=59 Identities=17% Similarity=0.380 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.+|.+.+.+++..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999876543
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.32 E-value=6.8e-12 Score=152.72 Aligned_cols=136 Identities=21% Similarity=0.311 Sum_probs=110.6
Q ss_pred HHHhcCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhcccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-
Q 005422 451 VLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN- 529 (697)
Q Consensus 451 ~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~- 529 (697)
..|+.-| .-|.+-...+....|+++++|+++++.++.+||.++..+.|++|++|+++||+++++|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 4455544 33433333344567899999999999999999999999999999999999999999999999999998743
Q ss_pred --CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHHHHHHHHHhHHHHH
Q 005422 530 --GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADDLKFVASQFRRLHS 599 (697)
Q Consensus 530 --~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~ 599 (697)
++.+.. +..+.+|+.||| +++ ...| |++|++|.++|++++|++++|+.++.++|+...
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-all---~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SIL---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GGG---GTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCcee--EEEecCCcchhh-hhc---cCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 223333 679999999999 553 3333 899999999999999999999999999997543
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=5.9e-12 Score=146.35 Aligned_cols=133 Identities=14% Similarity=0.259 Sum_probs=111.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHhHhcCCccCCcccHHHHHHHHhccc-ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEe
Q 005422 450 EVLLKGLPTDLRRDIKRHICLDLVRRVPLFDQMDERMLDAICERLK-PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTT 528 (697)
Q Consensus 450 ~~il~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~l~~~~l~~l~~~l~-~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~ 528 (697)
..++... +..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 4556444 44455444555678899999999999999999999998 689999999999999999999999999999875
Q ss_pred cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc-cEEEEEecHHHHHHHHHHhHHH
Q 005422 529 NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS-EVEAFALRADDLKFVASQFRRL 597 (697)
Q Consensus 529 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t-~~el~~L~~~df~~l~~~~p~l 597 (697)
+ + .+ +.++.+|++|||.+++ .+.+ ++++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al~---~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHHH---HTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHHh---CCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 2 34 6899999999999875 2233 789999999 5999999999999999988865
No 56
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.26 E-value=2.8e-11 Score=118.17 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred eEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc
Q 005422 497 ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS 575 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t 575 (697)
+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+.+|++||+ ++ +.+.+ ++++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 579999999999999999999999999998754 667766 789999999999 77 34444 789999999
Q ss_pred cEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 005422 576 EVEAFALRADDLKFVASQFRRLHSKQLRHKFRFYS 610 (697)
Q Consensus 576 ~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~s 610 (697)
+|+++.|++++|. |++....++...+.+.
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~~l~ 98 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLARQMR 98 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHHHHH
Confidence 9999999999998 8777766665555433
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.21 E-value=5.7e-11 Score=109.95 Aligned_cols=89 Identities=15% Similarity=0.302 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHHHHHhCC
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL-EEWRIKRTDTEQWMHHRQ 424 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~ 424 (697)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.....+. +++..+.+.....+-.++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998876544333 333333333333332222
Q ss_pred CChhHHHHHHH
Q 005422 425 LPPELRQSVRK 435 (697)
Q Consensus 425 lp~~L~~rVr~ 435 (697)
+ .++++|+.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 2 444555444
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=7.6e-11 Score=143.51 Aligned_cols=113 Identities=15% Similarity=0.266 Sum_probs=99.1
Q ss_pred HHHhHhcCCccCCcccHHHHHHHHhcccceE-ecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCe
Q 005422 468 ICLDLVRRVPLFDQMDERMLDAICERLKPAL-CTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDF 546 (697)
Q Consensus 468 l~~~~l~~v~~F~~l~~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 546 (697)
...+.+.++|.|++++....+.++..+.... +++|++|++|||.++.+|||++|.|+|+...++. +..+++||+
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd~ 408 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGDD 408 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTCE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCCc
Confidence 3467789999999999999999999998655 6789999999999999999999999998643332 678999999
Q ss_pred ecHhhHhhhcCCCCCCCCCCcceEEEEccc-EEEEEecHHHHHHHHHHh
Q 005422 547 CGEELLTWALDPRPSVILPSSTRTVKSISE-VEAFALRADDLKFVASQF 594 (697)
Q Consensus 547 fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~-~el~~L~~~df~~l~~~~ 594 (697)
|||.++ +...| |.+||+|.++ |++++++++||.+++.+-
T Consensus 409 FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 409 FGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 999998 56666 8999999985 999999999999999774
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.17 E-value=8.4e-11 Score=115.36 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=80.0
Q ss_pred HhcccceEecCCCEEEccCCCc--CEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCc
Q 005422 491 CERLKPALCTEGTFLVREGDPV--NEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSS 567 (697)
Q Consensus 491 ~~~l~~~~~~kge~I~~eGd~~--~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s 567 (697)
...++.+.|++|++|+++||++ +.+|+|.+|.|+++.. .+|++.+ +..+.+|++||+ +++ .+.+ +
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~~~------~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FGQE------R 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HTCC------B
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CCCC------c
Confidence 4567889999999999999999 9999999999999875 4677766 689999999999 653 2233 7
Q ss_pred ceEEEEcccEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005422 568 TRTVKSISEVEAFALRADDLKFVASQFRRLHSKQLRHKFRFY 609 (697)
Q Consensus 568 ~~tv~A~t~~el~~L~~~df~~l~~~~p~l~~~~l~~~~r~~ 609 (697)
+.+++|+++|+++.| +++|. |++....++...+.+
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l 104 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGL 104 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHH
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHH
Confidence 899999999999999 99886 777766665555433
No 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.14 E-value=8.2e-11 Score=122.43 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcccccCC-Ccc-cCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 345 NKYFYCLWWGLKNLSSVGQN-LAT-STYVGE----IIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 345 ~~Y~~slywal~tlstvG~g-d~~-~~~~~E----~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
..+..|+||+++++||+||| |+. |.+... ..|..++++.|.++.+..+|.+.+.++....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999999999 985 665533 8899999999999999999999988765544
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.07 E-value=1.5e-09 Score=96.58 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRL 406 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 406 (697)
|..|+||++.|++|+||||+.|.+..+++++++.+++|+.++++.++.+.+.++......
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999886554433
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.97 E-value=2.7e-09 Score=92.04 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
|..|+||++.|++|+||||+.|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5679999999999999999999999999999999999999999999999988764
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.93 E-value=2.2e-10 Score=100.21 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
|..|+||++.|++|+||||++|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 41 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 41 YPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp GGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999988876544
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.88 E-value=1.1e-08 Score=85.36 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYL 399 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 399 (697)
|..|+||++.|++|+||||+.|.+..+++++++.+++|+.++++.++.+.+.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998865
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.76 E-value=3.7e-10 Score=107.60 Aligned_cols=64 Identities=17% Similarity=0.403 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIRLEEW 409 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~ 409 (697)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+.++.
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999999999999999999999999999999999988766555443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.62 E-value=6.5e-08 Score=100.66 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999998887754
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.54 E-value=2.1e-07 Score=96.47 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQST 402 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 402 (697)
.|..|+||++.|+||+||||++|.|...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999999999999999988653
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.47 E-value=2.1e-07 Score=97.79 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.....
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999988875543
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.45 E-value=6.5e-07 Score=93.81 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIR 405 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 405 (697)
.|..|+||++.|+||+||||+.|.+...++++++.+++|++++|+++|.+.+.+.....+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999999999999999999999888765433
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.39 E-value=1.9e-06 Score=90.39 Aligned_cols=59 Identities=19% Similarity=0.364 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcccccCCCcccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 005422 347 YFYCLWWGLKNLSSVGQNLATST--YVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTIR 405 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~ 405 (697)
+..++||++.|+||+||||+.|+ +...++++.+.+++|+++.|+.+|.+.+-+..-.++
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45699999999999999999997 678899999999999999999999998877655544
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.27 E-value=2.6e-06 Score=96.97 Aligned_cols=53 Identities=13% Similarity=0.394 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGN-MQTYL 399 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~-~~~~l 399 (697)
|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +...+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 44444
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.25 E-value=2.6e-06 Score=88.31 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcccccCCCcccCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVGEI------IFAIIIATLGLVLFALLIGNMQTYLQSTTIRLE 407 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~E~------~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~ 407 (697)
|+.|+||++.|+||+||||+.|.+..++ +++++.+++|+.+++++++.+++.+.....+..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~~ 291 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC-
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988776 599999999999999999999998877665443
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.15 E-value=3.2e-06 Score=86.29 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
.|..|+||++.|+||+||||++|.|...++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999876543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.10 E-value=5.9e-06 Score=84.33 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcccccCCCcccCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005422 347 YFYCLWWGLKNLSSVGQNLATSTYVG-------EIIFAIIIATLGLVLFALLIGNMQTYLQSTT 403 (697)
Q Consensus 347 Y~~slywal~tlstvG~gd~~~~~~~-------E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 403 (697)
|+.|+||++.|+||+||||+.|.+.. .++++++.+++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999874 4999999999999999999999998776543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.08 E-value=1.2e-05 Score=84.37 Aligned_cols=59 Identities=8% Similarity=0.303 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcccccCCCcccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATST--YVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTI 404 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 404 (697)
.+..++||++.|+||+||||..|+ +...++++.+.+++|+++.|+.+|.+.+-+..-.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 467799999999999999999864 78899999999999999999999998887765443
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.98 E-value=0.00012 Score=73.06 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEee
Q 005422 84 RWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVI 163 (697)
Q Consensus 84 ~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~ 163 (697)
.++.++.++.+.+++..-+.-+ | .+......+..++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~~-~---------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~---- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATTY-E---------LDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K---- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCCS-S---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHccC-C---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C----
Confidence 4677788888877776554421 1 1223355678899999999999999997642 1
Q ss_pred ChHHHHHHHhhh-hHHHHhhhccCc
Q 005422 164 DPSKIASRYLKK-GFWIDFVAALPL 187 (697)
Q Consensus 164 d~~~Ia~~Yl~~-~F~iDlls~lP~ 187 (697)
-.++|.++ |-++|++.++|.
T Consensus 68 ----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 ----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp -----------CHHHHHHHHHHHHT
T ss_pred ----chhHHhcCCcHHHHHHHHHHH
Confidence 13578888 899998877764
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.83 E-value=1.4e-06 Score=92.50 Aligned_cols=54 Identities=19% Similarity=0.419 Sum_probs=49.0
Q ss_pred HHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005422 349 YCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQST 402 (697)
Q Consensus 349 ~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 402 (697)
.|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+.+.
T Consensus 48 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp TTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999998877653
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.64 E-value=7.9e-05 Score=68.93 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEee
Q 005422 84 RWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVI 163 (697)
Q Consensus 84 ~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~ 163 (697)
.|+.+++++.++++++.-+..+.+. +......+..++.++-++|.+|.++++..+ ++
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i---------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------- 78 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL---------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 78 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc-----------
Confidence 3788888888877776666543221 112344677899999999999999999764 21
Q ss_pred ChHHHHHHHhhhhHHHHhhhccCchhh
Q 005422 164 DPSKIASRYLKKGFWIDFVAALPLPQV 190 (697)
Q Consensus 164 d~~~Ia~~Yl~~~F~iDlls~lP~~~i 190 (697)
.++|+++ -|+|++|++|+...
T Consensus 79 -----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 79 -----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -----HHHHHHH-HHHHHHHHHHHHHH
Confidence 3578887 68999999998643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.33 E-value=0.00025 Score=64.38 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccccceeeecCCCchhhHHHHHHHHHHHHHHHHhhheeEEEEcCCCcccCCCeEee
Q 005422 84 RWNKIFLVACLVSLFVDPLFFYLPVVRHEVCIDIGIPLEVILTIIRTLGDAFYIIQIYIRFRTAYVAPSSRVFGRGELVI 163 (697)
Q Consensus 84 ~W~~~~li~~i~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~f~iDi~l~f~t~y~~~~s~~~~~G~lV~ 163 (697)
.++.+++++.+++++..-+..+ | ..+......+..++.++-++|.+|+++++..+ ++
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~-~--------~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------- 63 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYT-M--------QLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-S--------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-h--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-----------
Confidence 4677777777777766555422 1 11222355678899999999999999998753 21
Q ss_pred ChHHHHHHHhhhhHHHHhhhccCchhh
Q 005422 164 DPSKIASRYLKKGFWIDFVAALPLPQV 190 (697)
Q Consensus 164 d~~~Ia~~Yl~~~F~iDlls~lP~~~i 190 (697)
.++|++ |-++|+++++|+..-
T Consensus 64 -----~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 -----PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp -----TTTTTT-TCGGGTGGGSCHHHH
T ss_pred -----HHHHHH-HHHHHHHHHHHHHHH
Confidence 247999 999999999998543
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.40 E-value=12 Score=31.82 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=47.2
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEc
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSI 574 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~ 574 (697)
....+++|..+-..-.+.+++++|++|.+++.. +++ ...+++||.+= ..+. ...++++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~~ 97 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLY-------LGAG-------AAHDVNAI 97 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEES
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEeC
Confidence 445678888887666667899999999999864 333 35789999864 2221 35678888
Q ss_pred ccEEEEEe
Q 005422 575 SEVEAFAL 582 (697)
Q Consensus 575 t~~el~~L 582 (697)
++++++.+
T Consensus 98 ~~~~~~~~ 105 (114)
T 3fjs_A 98 TNTSLLVT 105 (114)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 88775543
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=68.00 E-value=18 Score=34.99 Aligned_cols=69 Identities=10% Similarity=0.185 Sum_probs=52.9
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEE
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKS 573 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A 573 (697)
+....+.+|+.+-..--+.+.+++|++|.+++... |+ ...+++||++= ..+. .+..++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 34556899999988888899999999999998653 33 35788998754 2222 4678899
Q ss_pred cccEEEEEec
Q 005422 574 ISEVEAFALR 583 (697)
Q Consensus 574 ~t~~el~~L~ 583 (697)
.+++.++.+.
T Consensus 98 ~~~~~~l~i~ 107 (227)
T 3rns_A 98 RDNLKLIEIG 107 (227)
T ss_dssp SSSEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 9999999773
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=65.19 E-value=20 Score=30.08 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=42.0
Q ss_pred EecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccE
Q 005422 498 LCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEV 577 (697)
Q Consensus 498 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~ 577 (697)
.+.+|..+-....+.+++++|++|.+.+.. +++ ...+.+||.+= ..+. ...++++.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------i~~~-------~~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLM-------VPAH-------KIHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEE-------ECCC-------CcEEEEeCCCc
Confidence 356776655455567899999999999754 333 35789999754 2221 23455666777
Q ss_pred EEEEe
Q 005422 578 EAFAL 582 (697)
Q Consensus 578 el~~L 582 (697)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=60.72 E-value=18 Score=31.23 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=33.2
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+.+|..+-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 4457788765443 377899999999999965 444 35799999865
No 84
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.10 E-value=35 Score=28.46 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=45.2
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEc
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSI 574 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~ 574 (697)
....+.+|..+-..-.+..++++|++|.+++.. +++ ...+.+||.+= ..+. ....+++.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPH-------VDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcC-------CceeeEeC
Confidence 445578887754333446799999999998865 333 35789999853 2221 34567777
Q ss_pred ccEEEEEe
Q 005422 575 SEVEAFAL 582 (697)
Q Consensus 575 t~~el~~L 582 (697)
++++++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 78887766
No 85
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=58.91 E-value=10 Score=44.10 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005422 346 KYFYCLWWGLKNLSSVGQNLATSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQS 401 (697)
Q Consensus 346 ~Y~~slywal~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 401 (697)
....++|+++.++...| ++..|.....+++.++++++++++.+...+++.++|+.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45679999999998777 57789999999999999999999999999999999975
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=58.16 E-value=27 Score=29.20 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=44.9
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEc
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSI 574 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~ 574 (697)
....+.+|..+-..-.+..++++|++|.+.+.. +++ ...+.+||++= ..+. ....+++.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIV-------MPAG-------IPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------SCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEEC
Confidence 344577888765444456799999999998864 333 35788999864 2221 34567777
Q ss_pred ccEEEEEe
Q 005422 575 SEVEAFAL 582 (697)
Q Consensus 575 t~~el~~L 582 (697)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 78777655
No 87
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=55.89 E-value=11 Score=24.46 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005422 612 QWRTWAACFIQAAWRRYKKRK 632 (697)
Q Consensus 612 ~~~~~~~~~~q~~~~~~~~r~ 632 (697)
+-+.+++..||.+|++|.-+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999999998654
No 88
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=55.60 E-value=11 Score=23.70 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005422 613 WRTWAACFIQAAWRRYKKR 631 (697)
Q Consensus 613 ~~~~~~~~~q~~~~~~~~r 631 (697)
-..+++..||.+|++|.-+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999854
No 89
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=50.29 E-value=38 Score=28.21 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=33.5
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+++|+.-.. .+.+++++|++|.+.+... +|. ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 34556788876554 4468999999999998653 233 35789999865
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=49.89 E-value=37 Score=28.85 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=48.4
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEE
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKS 573 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A 573 (697)
+....+.+|..+-..-.+..++++|++|.+++.. +++ ...+.+||.+= ..+. ....+++
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 101 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT-------IPGG-------VRHRART 101 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEC
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE-------ECCC-------CcEEeEE
Confidence 3455678888775555556899999999999865 333 35789999863 2221 2455666
Q ss_pred ccc-EEEEEe---cHHHHHHHH
Q 005422 574 ISE-VEAFAL---RADDLKFVA 591 (697)
Q Consensus 574 ~t~-~el~~L---~~~df~~l~ 591 (697)
.++ +.++.+ +++++...+
T Consensus 102 ~~~~~~~l~v~~p~~~d~~~~~ 123 (126)
T 4e2g_A 102 FEDGCLVLDIFSPPREDYARMA 123 (126)
T ss_dssp CTTCEEEEEEEESCCHHHHHHH
T ss_pred CCCCEEEEEEECCCCcchhhhh
Confidence 666 665533 345555443
No 91
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=47.79 E-value=25 Score=32.64 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=38.6
Q ss_pred CcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc-cEEEEEecHHH
Q 005422 511 PVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS-EVEAFALRADD 586 (697)
Q Consensus 511 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t-~~el~~L~~~d 586 (697)
+.++++++++|.+.+-..++|+.. -..+++||+|= +.+. -..+-++.+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~-------lP~g-------vpH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL-------LPPH-------VRHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE-------ECTT-------CCEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE-------eCCC-------CCcCccccCCCCEEEEEEeCC
Confidence 568999999999999877665322 25799999975 2221 123444455 66666665543
No 92
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=45.52 E-value=21 Score=33.15 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=36.1
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.||......-..++++++|++|++++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44556888887655533457999999999998664333222 35899999864
No 93
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=42.90 E-value=31 Score=28.37 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=33.1
Q ss_pred cceEecCCCEEEcc--CCC-cCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVRE--GDP-VNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~e--Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|..+-.. -.+ ..++++|++|.+++.. +++ ...+++||++=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34467888876544 334 6799999999998865 333 35789998764
No 94
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=42.22 E-value=35 Score=27.47 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.1
Q ss_pred cceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|..+-..-.+ .+++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34457888876443334 3579999999998864 233 35789999863
No 95
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=41.54 E-value=56 Score=30.32 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=32.0
Q ss_pred eEecCCCEEE---ccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 497 ALCTEGTFLV---REGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~---~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..+.||...- ..-.+.+++++|++|.+++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3467776543 2233457999999999998764422211 35899999864
No 96
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=40.50 E-value=28 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=31.5
Q ss_pred EecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 498 LCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 498 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..++|..-... +..++++.|++|.+.+... +|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEE
Confidence 46677665554 3345999999999998643 443 35789999876
No 97
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=40.50 E-value=30 Score=29.49 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=33.0
Q ss_pred ccceEecCCCEEEccCCCc-CEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPV-NEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|..+-..-.+. .++++|++|.+++... +|+ ...+++||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 3445678888775544453 6899999999988532 333 35788999753
No 98
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=39.22 E-value=52 Score=31.66 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=48.1
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEE
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKS 573 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A 573 (697)
+....+++|+.+-..-.+.+++++|++|.+++.. +|+ ...+++||.+= +.+. .+..+++
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAV-------LPAN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE-------ECTT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 4456789999887665667799999999999864 333 35788999854 2221 3567788
Q ss_pred -cccEEEEEe
Q 005422 574 -ISEVEAFAL 582 (697)
Q Consensus 574 -~t~~el~~L 582 (697)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877654
No 99
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=38.85 E-value=20 Score=31.26 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=31.4
Q ss_pred eEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 497 ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
-..++|..-.+..+ .+++++|++|.+.+... +|. ...+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEE
Confidence 34667776654432 38999999999998642 343 35789999875
No 100
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=37.38 E-value=62 Score=28.86 Aligned_cols=64 Identities=8% Similarity=0.069 Sum_probs=41.0
Q ss_pred ccCCCcCEEEEEEeeeEEEEEecC--CeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecH
Q 005422 507 REGDPVNEMLFIIRGHLDSYTTNG--GRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRA 584 (697)
Q Consensus 507 ~eGd~~~~lyfI~~G~v~v~~~~~--g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~ 584 (697)
+.-+..|++|+|++|.+.+...++ +.... ....+++|+++-- |+- -..+-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEe
Confidence 344567899999999999976532 11111 1357899998742 221 234556678888887765
Q ss_pred H
Q 005422 585 D 585 (697)
Q Consensus 585 ~ 585 (697)
.
T Consensus 110 ~ 110 (140)
T 3d0j_A 110 S 110 (140)
T ss_dssp S
T ss_pred C
Confidence 4
No 101
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=36.79 E-value=68 Score=29.72 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred CcCEEEEEEeeeEEEEEecCCe--eeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecHHH
Q 005422 511 PVNEMLFIIRGHLDSYTTNGGR--TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRADD 586 (697)
Q Consensus 511 ~~~~lyfI~~G~v~v~~~~~g~--~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~~d 586 (697)
+.++++++++|.+.+-..++|. ... .-..+++||+|= +.+. -+.+-++-+++..+.+.+..
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~-~dv~i~eGdmfl-------lP~g-------vpHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKF-IDIIINEGDSYL-------LPGN-------VPHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEE-EEEEECTTEEEE-------ECTT-------CCEEEEECTTCEEEEEEECC
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccce-eeEEECCCCEEE-------cCCC-------CCcCCcccCCcEEEEEEecC
Confidence 4569999999999997766550 011 125799999875 2221 13344445777777776654
No 102
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=35.59 E-value=44 Score=32.19 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=30.2
Q ss_pred EecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 498 LCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 498 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.+.||..+=.--.+.+++|+|++|.++....+ ++ ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRN-AP-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETT-SC-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CC-----EEecCCCCEEE
Confidence 34555444333356789999999999886542 32 35789998764
No 103
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=35.51 E-value=1e+02 Score=25.00 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=41.2
Q ss_pred ceEecCCCEEEccCCCc-CEE-EEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEE
Q 005422 496 PALCTEGTFLVREGDPV-NEM-LFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKS 573 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~-~~l-yfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A 573 (697)
...+.+|..+-..-.+. .++ ++|++|.+++...+ |+ ...+.+||.+- ..+. ....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLV-------APIS-------TPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEE-------EETT-------SCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEE-------eCCC-------CcEEEEE
Confidence 34577887765433332 466 89999999876421 22 35789998754 2221 2456677
Q ss_pred cccEEEEEe
Q 005422 574 ISEVEAFAL 582 (697)
Q Consensus 574 ~t~~el~~L 582 (697)
.++++++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777766544
No 104
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.28 E-value=54 Score=26.33 Aligned_cols=52 Identities=10% Similarity=0.233 Sum_probs=34.8
Q ss_pred cCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEecH
Q 005422 512 VNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALRA 584 (697)
Q Consensus 512 ~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~~ 584 (697)
..++++|++|.+.+... ++ ...+.+||.+- ..+. ...++.+.+++.++.++.
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEEc
Confidence 37999999999987542 32 35788998753 2222 244556667888887753
No 105
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=33.51 E-value=41 Score=27.70 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred ecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEE
Q 005422 499 CTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVE 578 (697)
Q Consensus 499 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~e 578 (697)
..+|+...+.-+..+++++|++|.+++...+ ++ ...+.+||.+= ..+. ...++++.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAV-------VPKS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEE-------ECTT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEE-------ECCC-------CcEeeEeCCCeE
Confidence 3455543333333389999999999986533 13 35799999863 2221 233455557788
Q ss_pred EEEecHHHH
Q 005422 579 AFALRADDL 587 (697)
Q Consensus 579 l~~L~~~df 587 (697)
++.+.....
T Consensus 95 ~l~i~~~~~ 103 (107)
T 2i45_A 95 LVLIELSDP 103 (107)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCc
Confidence 888775543
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=32.71 E-value=46 Score=30.43 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=32.4
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|..+-..--...++++|++|.+.+.. +++ ...+.+||++=
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 344567776654434457899999999998764 333 35789999864
No 107
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=31.69 E-value=68 Score=30.14 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=34.8
Q ss_pred ccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEecCC---eeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTNGG---RTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|...-..-.+ .+++++|++|.+++...+++ .+.. ...+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 344567888765433333 57999999999998664332 2211 25789999874
No 108
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=30.51 E-value=1.1e+02 Score=30.64 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=43.6
Q ss_pred EEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEec
Q 005422 504 FLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALR 583 (697)
Q Consensus 504 ~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~ 583 (697)
..++ -+..++++++++|.+.+-..++|+-. -..+++|++|= +.+. -+.+=++-++|..+.|.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------lP~g-------v~HsP~r~~et~gLviE 105 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------LPAR-------VPHSPQRFANTVGLVVE 105 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------ECTT-------CCEEEEECTTCEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------eCCC-------CCcCCcccCCeEEEEEe
Confidence 3444 44678999999999999777655322 24789999874 2221 23445567788888887
Q ss_pred HHH
Q 005422 584 ADD 586 (697)
Q Consensus 584 ~~d 586 (697)
+..
T Consensus 106 ~~R 108 (286)
T 2qnk_A 106 RRR 108 (286)
T ss_dssp ECC
T ss_pred ecC
Confidence 544
No 109
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=30.50 E-value=27 Score=28.43 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=30.8
Q ss_pred ceEecCCCEEEccCCCcC-EEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVN-EMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...++||...-..-.+.+ ++++|++|.+++... +|.+ ...+.+||.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 445777775422222333 599999999998643 3211 35799999874
No 110
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=29.93 E-value=42 Score=31.11 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=32.0
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
+....++||...-..-....+..+|++|++++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344557777654333334557889999999986432 33 3579999998
No 111
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=29.89 E-value=93 Score=28.06 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=34.1
Q ss_pred CcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcccEEEEEec
Q 005422 511 PVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSISEVEAFALR 583 (697)
Q Consensus 511 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t~~el~~L~ 583 (697)
..+++++|++|.+++.. +|+ ...+++||.+= ..+. .+.+..+.++|+++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~-------iP~G-------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF-------IPKG-------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE-------ECCC-------CEEEEEeCCCEEEEEEE
Confidence 46799999999999874 444 35789999864 2211 23444455677766554
No 112
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.87 E-value=42 Score=30.75 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.5
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+.+|..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34466776654444456789999999999854 333 35789999764
No 113
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=27.39 E-value=52 Score=35.06 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=38.2
Q ss_pred cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 493 RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.+....+.||..+...-...+++++|++|+..+...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355677899987766655677999999999998654333222 35799999874
No 114
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=27.02 E-value=53 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 510 DPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 510 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+++++|++|.+++...++ +. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~--~~---~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD--TA---PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC--SS---CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCE--EE---EEEECCCCEEE
Confidence 456799999999999865332 10 04789999865
No 115
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.87 E-value=48 Score=27.76 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=29.1
Q ss_pred eEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeee-ecCCCCeec
Q 005422 497 ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSC-RIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~-~l~~Gd~fG 548 (697)
..+.+|..+-..-....++++|++|.+.+.. +++ .. .+.+||++=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTS-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCE-----EEEEeCCCCEEE
Confidence 3456666543222345689999999998864 233 24 788998754
No 116
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=26.74 E-value=43 Score=30.34 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=30.6
Q ss_pred eEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 497 ALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..+.+|..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666554444456789999999999864 333 35788998763
No 117
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=26.37 E-value=72 Score=29.99 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=46.4
Q ss_pred cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEE
Q 005422 493 RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVK 572 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~ 572 (697)
.+....+.+|..+-.......++.+|++|..+ +++ ..+.+||++= ..+. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~-------~p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEI-------ADQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEE-------ECSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEE-------eCcC-------CccCCE
Confidence 45677799999999888889999999999965 222 3678898854 2221 344455
Q ss_pred E--cccEEEEEe
Q 005422 573 S--ISEVEAFAL 582 (697)
Q Consensus 573 A--~t~~el~~L 582 (697)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 678888765
No 118
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=26.13 E-value=81 Score=29.06 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=31.1
Q ss_pred eEecCCCEEEc--cCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 497 ALCTEGTFLVR--EGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 497 ~~~~kge~I~~--eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..+.+|...-. ......++++|++|.+++.. +++ ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45677776542 22334699999999999864 333 35799999863
No 119
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=26.04 E-value=75 Score=33.12 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|..+-..-.+..++++|++|.+++...+ +|+.. ...+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344567888866433334789999999999987755 34422 24789999753
No 120
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.96 E-value=81 Score=32.46 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=34.6
Q ss_pred cceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|...-..-.+ .+++++|++|++++...+ +|+.. ...+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34557788865433234 789999999999987654 33222 35789999754
No 121
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=25.91 E-value=62 Score=27.45 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=46.6
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEc-
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSI- 574 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~- 574 (697)
...+.+|...-..-....++++|++|.+++.. +++ ...+++||++= ..+. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~-------i~~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLII-------IPLD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEE-------ECCC-------CcEEeEeCC
Confidence 34566776443333456799999999998865 333 35788998864 2221 12344443
Q ss_pred -ccEE--EEEecHHHHHHHHHHhH
Q 005422 575 -SEVE--AFALRADDLKFVASQFR 595 (697)
Q Consensus 575 -t~~e--l~~L~~~df~~l~~~~p 595 (697)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 4444 45567766666655533
No 122
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.77 E-value=57 Score=29.30 Aligned_cols=50 Identities=6% Similarity=-0.011 Sum_probs=31.8
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCe-----eeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGR-----TGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~-----~~~~~~~~l~~Gd~fG 548 (697)
...+.+|..+-..-....++++|++|.+.+...++++ .. ...+.+||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 4456777654222224568999999999987654221 01 35789999853
No 123
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=25.67 E-value=80 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=31.3
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+.+|..+-..--...++++|++|.+.+... +++ ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 445677776643333457999999999988643 221 14688998864
No 124
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=25.28 E-value=56 Score=35.03 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=38.9
Q ss_pred cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 493 RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.+....+.||..+...-..++++++|++|+..+...+.+... ...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 455677999998877655677999999999998664333222 35789999874
No 125
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.27 E-value=50 Score=29.95 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=30.9
Q ss_pred cceEecCCCEEE--ccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLV--REGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~--~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|.... +.-+..+++++|++|.+++.. +++ ...+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD--DQG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE--CCE-----EEEeCCCCEEE
Confidence 345577777542 222233699999999999864 233 35789998864
No 126
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=24.86 E-value=57 Score=29.00 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=34.9
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
+....++||..+-....+..+.++|++|..+. ..|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55677999999877777778889999999883 2232210 03567888764
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=24.63 E-value=55 Score=28.01 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.4
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+.+|...-..-....++++|++|.+++.. +++ ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEEE
Confidence 34466666554333446799999999998764 233 25788888763
No 128
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.60 E-value=59 Score=28.16 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=31.2
Q ss_pred ceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...++||..+-..--. ..++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 4467888766432223 4689999999998864 333 35788998863
No 129
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.25 E-value=1.1e+02 Score=33.35 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHhcccceEecCCCEEEccCC-CcCEEEEEEeeeEEEEEecC-CeeeeeeeeecCCCCeec
Q 005422 488 DAICERLKPALCTEGTFLVREGD-PVNEMLFIIRGHLDSYTTNG-GRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 488 ~~l~~~l~~~~~~kge~I~~eGd-~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 548 (697)
..+-..+....+.||..+-.-=. .++++++|++|.+++...+. |...+ ...+.+||++=
T Consensus 363 ~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 363 RQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 34434566677888886644333 36899999999999866443 33222 25799999874
No 130
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.15 E-value=52 Score=29.50 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=30.9
Q ss_pred cceEecCCCE-E-EccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 495 KPALCTEGTF-L-VREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 495 ~~~~~~kge~-I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
....+.+|.. . .+.-...+++++|++|.+.+.. +++ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3455778773 2 2222246799999999999864 333 3578999986
No 131
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=23.97 E-value=65 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=37.9
Q ss_pred cccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 493 RLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.+....++||..+...-..++++++|++|++.+...+.+... ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 345567899988766645577999999999988654333222 36899999874
No 132
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.64 E-value=1.1e+02 Score=31.38 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=35.5
Q ss_pred ccceEecCCCEEEccCCCc-CEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPV-NEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|..+-..-.+. +++++|++|.+++...+ +|+. . ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~--~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA-S--VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE-E--EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE-E--EEEECCCCEEE
Confidence 4455688888765433343 89999999999987533 3431 1 25789999874
No 133
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.14 E-value=1e+02 Score=30.57 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=44.3
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS 575 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t 575 (697)
...++||..--......+++.+|++|.+++...+ |+ ...+++||.+=- .+. ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~-------p~~-------~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYL-------PPN-------FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEE-------CTT-------CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEE-------CCC-------CCEEEEeCC
Confidence 4557887764333345679999999999986431 33 257899998642 221 234555567
Q ss_pred cEEEEEecH
Q 005422 576 EVEAFALRA 584 (697)
Q Consensus 576 ~~el~~L~~ 584 (697)
+++++.+.+
T Consensus 134 ~Ar~l~V~k 142 (266)
T 4e2q_A 134 SATLVVFER 142 (266)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888888754
No 134
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=23.04 E-value=1e+02 Score=33.65 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHhcccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 488 DAICERLKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 488 ~~l~~~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
..+--.+....+.||..+-..=.+ ++++++|++|.+++...+ +|...+ ...+.+||++=
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEEE
Confidence 333445566778999876443333 689999999999986644 333322 25799999873
No 135
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.94 E-value=1.7e+02 Score=28.33 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=41.6
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeecHhhHhhhcCCCCCCCCCCcceEEEEcc
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKSIS 575 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~~~s~~tv~A~t 575 (697)
...++||...-..- .+++.+|++|.+++.. +|+ ...+++||++-- .+. .+.++++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~-------p~~-------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYL-------PAG-------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEE-------CTT-------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEE-------CCC-------CCEEEEeCC
Confidence 34577887655442 7789999999999864 333 357999998652 211 223444447
Q ss_pred cEEEEEec
Q 005422 576 EVEAFALR 583 (697)
Q Consensus 576 ~~el~~L~ 583 (697)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77776664
No 136
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.52 E-value=54 Score=34.68 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=34.6
Q ss_pred cceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 495 KPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
....+.+|+.+-..-....++|||++|+-.... .+|+ ...+++||++-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~-v~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI-VDGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE-ETTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE-ECCE-----EEEEcCCCEEE
Confidence 566788888876655566799999999865433 3444 35789999875
No 137
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=22.51 E-value=1e+02 Score=29.78 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=34.7
Q ss_pred ccceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 494 LKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
+....+.+|..+-..--+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688998876655667899999999999865 343 3578899843
No 138
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=22.42 E-value=1e+02 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=37.2
Q ss_pred cccceEecCCCEEEccCCC-cCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 493 RLKPALCTEGTFLVREGDP-VNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 493 ~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
.+....+.||..+-..=.+ ++++++|++|.+++...+ +|...+ ...+++||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 3456678898876443333 689999999999986644 343322 25799999873
No 139
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=22.35 E-value=65 Score=27.90 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=28.1
Q ss_pred EecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 498 LCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 498 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
.+.+|..+-..-....++++|++|.+++....+++ ...+++||++-
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 34555543222233456678999999986323443 35789999763
No 140
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.77 E-value=64 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=30.5
Q ss_pred ceEecCCCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+.||..-.+ ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEE
Confidence 345777743232 246799999999999864 344 34789999875
No 141
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=21.11 E-value=55 Score=30.13 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=24.4
Q ss_pred CCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 510 DPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 510 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
..+++++||++|.+++.. +++ ...+.+||.+=
T Consensus 108 h~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 345789999999999865 333 35789999865
No 142
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.92 E-value=1.1e+02 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=35.4
Q ss_pred ccceEecCCCEEEccCCCc-CEEEEEEeeeEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005422 494 LKPALCTEGTFLVREGDPV-NEMLFIIRGHLDSYTT-NGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 494 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 548 (697)
+....+.+|...-..-.+. +++++|++|.+++... .+|+.. ...+++||++-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 3445678888765443444 7999999999998654 344322 25789999864
No 143
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=20.80 E-value=1.5e+02 Score=32.59 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHHhcccceEecCCCEEEccC-CCcCEEEEEEeeeEEEEEec-CCeeeeeeeeecCCCCeec
Q 005422 488 DAICERLKPALCTEGTFLVREG-DPVNEMLFIIRGHLDSYTTN-GGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 488 ~~l~~~l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 548 (697)
..+--.+....+.||.++-..= -.++++.+|++|.+++...+ +|...+ ...+.+||+|=
T Consensus 390 ~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 390 RFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 3333456677789998875432 34689999999999986644 344333 36899999874
No 144
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.25 E-value=1.5e+02 Score=28.49 Aligned_cols=46 Identities=15% Similarity=0.032 Sum_probs=33.3
Q ss_pred ceEecC-CCEEEccCCCcCEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCeec
Q 005422 496 PALCTE-GTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCG 548 (697)
Q Consensus 496 ~~~~~k-ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 548 (697)
...+++ |..+-..--+..++++|++|.+++.. +++ ...+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV--EGC-----TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 345888 87775555556799999999999864 233 35799999865
No 145
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=20.12 E-value=35 Score=28.16 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=31.0
Q ss_pred cceEecCCCEEEccCCCc-CEEEEEEeeeEEEEEecCCeeeeeeeeecCCCCee
Q 005422 495 KPALCTEGTFLVREGDPV-NEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFC 547 (697)
Q Consensus 495 ~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 547 (697)
....++||+-+-.+--+. ...|+|.+|.+++...++... ...+.+|+.+
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 445688888875554444 478889999998864433222 2467888764
Done!