BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005423
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIA 233
L L+V E + + + +LQL ++ L G+R+RV I
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293
R LV P V +DEPL +LD+ + M + + +L + + E L D+I
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Query: 294 LLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL--RAINTDFDRI 341
+L G G+ L L H+ F + SP +FL + T D++
Sbjct: 206 VLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQV 254
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIA 233
L L+V E + + + +LQL ++ L G+R+RV I
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293
R LV P V +DEPL +LD+ + M + + +L + + E L D+I
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Query: 294 LLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL--RAINTDFDRI 341
+L G G+ L L H+ F + SP +FL + T D++
Sbjct: 206 VLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQV 254
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G V +GP+ GKSTLLR IAG G++F+ + ++ P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIA 233
L L+V E + + + +LQL ++ L G+R+RV I
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293
R LV P V +D+PL +LD+ + M + + +L + + E L D+I
Sbjct: 146 RTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Query: 294 LLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL--RAINTDFDRI 341
+L G G+ L L H+ F + SP +FL + T D++
Sbjct: 206 VLDAGRVAQVGKPLE-LYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQV 254
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 27/192 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYG--SYGFVERETT 192
G ++GP+ SGKSTLL IAG P S ++Y F +E+P + G V +
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---FDEKDVTELPPKDRNVGLVFQNWA 85
Query: 193 LIGSLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIA 233
L +TV + + + + +L + + L G+++RV IA
Sbjct: 86 LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA 145
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 292
R LV P VL +DEPL +LD++ L + LK+L G T ++ + E + DRI
Sbjct: 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY-VTHDQAEALAMADRI 204
Query: 293 CLLSNGNTLFFG 304
++ G L G
Sbjct: 205 AVIREGEILQVG 216
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFV-----NGAKSEMPYGSYGFVE 188
G V++GP+ GK+T LR IAG P R+Y G+ V M + SY
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 97
Query: 189 RET---TLIGSLTVREY---------LYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL 236
T + L ++++ + + LLQ+ + L G+R+RV +AR +
Sbjct: 98 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 157
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
V+ P VL +DEPL +LD+ + M +KKL + E + DRI +++
Sbjct: 158 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 217
Query: 297 NGNTLFFG 304
G L G
Sbjct: 218 RGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFV-----NGAKSEMPYGSYGFVE 188
G V++GP+ GK+T LR IAG P R+Y G+ V M + SY
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96
Query: 189 RET---TLIGSLTVREY---------LYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL 236
T + L ++++ + + LLQ+ + L G+R+RV +AR +
Sbjct: 97 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 156
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
V+ P VL +DEPL +LD+ + M +KKL + E + DRI +++
Sbjct: 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 216
Query: 297 NGNTLFFG 304
G L G
Sbjct: 217 RGQLLQIG 224
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-----------------RLPHSARMYGEVFVNGA--K 176
G M ++GP+ SGK+T+LR IAG LP R G VF N A +
Sbjct: 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100
Query: 177 SEMPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIA 233
Y + F RE + VRE L + ++L + + + L G+++RV +A
Sbjct: 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRF---MRLESYANRFPHELSGGQQQRVALA 157
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 292
R L RP VL DEP +D+ + ++++ G T +F + E + DR+
Sbjct: 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALEVADRV 216
Query: 293 CLLSNGNTLFFG 304
+L GN FG
Sbjct: 217 LVLHEGNVEQFG 228
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 28/228 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GE---------VFVNGAKSE--MPYG 182
G +++GP+ GK+T LR IAG P ++Y G+ +FV + M +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 183 SYGFVERET---TLIGSLTVREY---------LYYSALLQLPGFFCQRKNGLPCGERRRV 230
SY T + L +R+ + LL L ++ L G+R+RV
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148
Query: 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF 289
+ R +V +P V +DEPL +LD+ + M LKKL G T ++ + E +
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMG 207
Query: 290 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 337
DRI +++ G G +N F + SP +FL AI T+
Sbjct: 208 DRIAVMNRGVLQQVGSPDEVYDKPANT-FVAGFIGSPPMNFLDAIVTE 254
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 29/232 (12%)
Query: 126 VKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGAKSEMP 180
VK+ +G + G ++GP+ GK+T L +AG P S +Y +V VN +
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK-- 73
Query: 181 YGSYGFVERETTLIGSLTVREYLYY-------------------SALLQLPGFFCQRKNG 221
Y G V + L +TV E + + + L + ++
Sbjct: 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ 133
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQ 280
L G+++RV +AR LV +P VL DEPL +LD+ ++M +K L G T ++ +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY-VTH 192
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLR 332
E + RI + + G + +G N F + +P +FLR
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM-FVASFIGNPPTNFLR 243
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------- 177
+K+ N G IMGP+ SGKST+L I G L GEV+++ K+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNGLPC--------- 224
++ GFV ++ LI LT E + + + G +RK L C
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 225 -----------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGC 272
G+++RV IAR L P ++ D+P + LDS + +M LKKL G
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNG 298
T++ + + FG +RI L +G
Sbjct: 198 TVVVVTHDINVARFG--ERIIYLKDG 221
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARM-YGEVFVNGAKSE 178
+D V+ N PG++ ++G SGKSTL+ I RL P R+ E+ V K +
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPERGRVEVDELDVRTVKLK 413
Query: 179 MPYGSYGFVERETTLIGSLTVREYL--------------------YYSALLQLP-GFFCQ 217
G V +ET L S T++E L + ++ LP G+ +
Sbjct: 414 DLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSR 472
Query: 218 RKNG---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
+ G G+++R+ IAR LV +P VL +D+ +D ++ ++ LK+ + GCT
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTT 531
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
+ T + L D+I +L G FG L+H
Sbjct: 532 FIITQKIPTAL--LADKILVLHEGKVAGFGTHKELLEH 567
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 90/231 (38%), Gaps = 34/231 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGE----------VFVNGAKSEMP--YG 182
G V++GP+ GK+T LR IAG P ++Y E VFV + ++ +
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQ 91
Query: 183 SYGFVERETTLIG---------------SLTVREYLYYSALLQLPGFFCQRKNGLPCGER 227
SY T VRE L +L ++ L G+R
Sbjct: 92 SYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL---LNRKPRELSGGQR 148
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVF 286
+RV + R ++ RP V DEPL +LD+ + LKKL G T ++ + E
Sbjct: 149 QRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTHDQVEAX 207
Query: 287 GLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 337
DRI + + G G N F + SP +FL A TD
Sbjct: 208 TXGDRIAVXNKGELQQVGTPDEVYYKPVNT-FVAGFIGSPPXNFLDATITD 257
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------- 177
+K+ N G IMGP+ SGKST+L I G L GEV+++ K+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNGLPC--------- 224
++ GFV ++ LI LT E + + + G +RK L C
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 225 -----------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGC 272
G+++RV IAR L P ++ D+P LDS + +M LKKL G
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 273 TLLFTINQSSTEVFGLFDRICLLSNG 298
T++ + + FG +RI L +G
Sbjct: 198 TVVVVTHDINVARFG--ERIIYLKDG 221
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 23/186 (12%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIGS 196
V++GP +GKS L IAG + GEV +NGA + +P GFV ++ L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 197 LTVREYLYY-----------------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMR 239
L+V + Y + L + ++ L GER+RV +AR LV++
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
P +L +DEPL +D + ++M L+ + + + E L D + ++ NG
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 300 TLFFGE 305
+ G+
Sbjct: 205 IVEKGK 210
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 120 RYS-DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RY+ D V+K N G + V++G SGK+TLL+ +AG L + GE+F++G+ ++
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA----GEIFLDGSPAD 75
Query: 179 MPY-----GSYGFVERETTLIGSLTVREYLYYS-------------------ALLQLPGF 214
P+ Y F + +IG+ TV E + +S L+ L G
Sbjct: 76 -PFLLRKNVGYVFQNPSSQIIGA-TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGL 133
Query: 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 274
L G+++R+ IA L L +DEP+ LD S + L+ L + G +
Sbjct: 134 AAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGI 193
Query: 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
+ ++ E D I +SNG F G
Sbjct: 194 ILVTHE--LEYLDDMDFILHISNGTIDFCG 221
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 29/187 (15%)
Query: 106 VVWKDLTVTIKGK--RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
+ K++ +T+ GK R+S + + + G +I+GP SGK+TLLRAI+G LP+S
Sbjct: 2 IQLKNVGITLSGKGYERFSLENIN----LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS 57
Query: 164 ARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTVREYLY-YSALLQLP-GFFCQRK 219
G +F+NG + Y Y E IG +TV + +Y Y L L F +
Sbjct: 58 ----GNIFINGMEVRKIRNYIRYSTNLPEAYEIG-VTVNDIVYLYEELKGLDRDLFLEML 112
Query: 220 NGLPCGE---RRR-----------VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265
L GE RR+ VR + L +P ++ +DEP ++D+ ++ +K
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 266 KLASTGC 272
+ G
Sbjct: 173 EYGKEGI 179
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGE---VFVNGAKSEMPYG-SYGFVERETTLIG 195
I+GP+ +GK+T +R IAG +P + +Y + V NG P G V + L
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 196 SLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIAREL 236
+LT E + + + +L + L G+++RV +AR L
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARAL 155
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
V P +L +DEP +LD+ +K++ S L ++ ++F + DR+ +L
Sbjct: 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
Query: 297 NGNTLFFGE 305
G + G+
Sbjct: 216 KGKLVQVGK 224
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------------EMPYG 182
G ++ G SGKSTLL+ +AG + ++ G+V +G + + P
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRNIGIAFQYPED 89
Query: 183 SYGFVERETTLIGSLTVREY--------LYYSALLQLPGFFCQRKNGLP----CGERRRV 230
+ F ER + + V+ + L A+ + F K+ +P GE+RRV
Sbjct: 90 QF-FAERVFDEV-AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV 147
Query: 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290
IA +V P +L +DEPL LD ++ ++K + G T++ I+ V D
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-ISHDIETVINHVD 206
Query: 291 RICLLSNGNTLFFGETLACLQHFS 314
R+ +L G +F G + L+ +
Sbjct: 207 RVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------------EMPYG 182
G ++ G SGKSTLL+ +AG + ++ G+V +G + + P
Sbjct: 35 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRNIGIAFQYPED 91
Query: 183 SYGFVERETTLIGSLTVREY--------LYYSALLQLPGFFCQRKNGLP----CGERRRV 230
+ F ER + + V+ + L A+ + F K+ +P GE+RRV
Sbjct: 92 QF-FAERVFDEV-AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV 149
Query: 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290
IA +V P +L +DEPL LD ++ ++K + G T++ I+ V D
Sbjct: 150 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-ISHDIETVINHVD 208
Query: 291 RICLLSNGNTLFFGETLACLQHFS 314
R+ +L G +F G + L+ +
Sbjct: 209 RVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 24/189 (12%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGE---VFVNGAKSEMPYG-SYGFVERETTLIG 195
I+GP+ +GK+T +R IAG +P + +Y + V NG P G V + L
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 196 SLTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIAREL 236
+LT E + + + +L + L +++RV +AR L
Sbjct: 96 NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155
Query: 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
V P +L +DEP +LD+ +K++ S L ++ ++F + DR+ +L
Sbjct: 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
Query: 297 NGNTLFFGE 305
G + G+
Sbjct: 216 KGKLVQVGK 224
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMPYGSY--GFVERET 191
G VI+GP +GK+ L IAG +P S R + ++G +++ + FV +
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGR----ILLDGKDVTDLSPEKHDIAFVYQNY 81
Query: 192 TLIGSLTVREYLYY----------------SALLQLPGFFCQRKNGLPCGERRRVRIARE 235
+L + V++ L + + L++ + L GE++RV +AR
Sbjct: 82 SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141
Query: 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295
LV P +L +DEPL LD + L L + I TE + DRI ++
Sbjct: 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 296 SNGNTLFFGE 305
+G + G+
Sbjct: 202 MDGKLIQVGK 211
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGF 186
G I GP+ SGKST L I G L GEV+++ K+ ++ GF
Sbjct: 31 GEFVSIXGPSGSGKSTXLNII-GCLDKPTE--GEVYIDNIKTNDLDDDELTKIRRDKIGF 87
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNGLPC------------------- 224
V ++ LI LT E + + + G +RK L C
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLS 147
Query: 225 -GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 282
G+++RV IAR L P ++ DEP LDS + + LKKL G T++ + +
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN 207
Query: 283 TEVFGLFDRICLLSNG 298
FG +RI L +G
Sbjct: 208 VARFG--ERIIYLKDG 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183
+V+K N + G + V++GP+ SGKST LR + GE+ ++G + +
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTN 73
Query: 184 YGFVERET-------------TLIGSLTV---------REYLYYSALLQLPGFFCQRK-- 219
V E T++ ++T+ RE A+ L + K
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 133
Query: 220 ---NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
+ L G+ +RV IAR L M P ++ DEP LD ++ +K+LA+ G T++
Sbjct: 134 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 277 TINQS--STEVFGLFDRICLLSNG 298
++ + EV DR+ + G
Sbjct: 194 VTHEMGFAREV---GDRVLFMDGG 214
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 35/204 (17%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183
+V+K N + G + V++GP+ SGKST LR + GE+ ++G + +
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTN 94
Query: 184 YGFVERET-------------TLIGSLTV---------REYLYYSALLQLPGFFCQRK-- 219
V E T++ ++T+ RE A+ L + K
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 220 ---NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
+ L G+ +RV IAR L M P ++ DEP LD ++ +K+LA+ G T++
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 277 TINQS--STEVFGLFDRICLLSNG 298
++ + EV DR+ + G
Sbjct: 215 VTHEMGFAREV---GDRVLFMDGG 235
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++GP+ GKST++ A+ R + + GE+F++G++ E V +
Sbjct: 1104 PGQTLALVGPSGCGKSTVV-ALLERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQ 1160
Query: 190 ETTLIGSLTVREYLY---------------------YSALLQLPGFF----CQRKNGLPC 224
E TL +Y ++ + +LP F R L
Sbjct: 1161 EPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284
G+++R+ IAR LV P +L +DE LD+ S ++ L + A G T + ++ +T
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHRLNTV 1279
Query: 285 VFGLFDRICLLSNGNTLFFG 304
+ D I ++SNG + G
Sbjct: 1280 MNA--DCIAVVSNGTIIEKG 1297
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 277
R L G+++R+ IAR LV P +L +DE LD+ S ++ L K A+ G T +
Sbjct: 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIII 609
Query: 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
++ ST D I NG + G+ A +
Sbjct: 610 AHRLST--IRNADLIISCKNGQVVEVGDHRALMAQ 642
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 199 VREYLYYSALLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
V+E Y +++LP F +R L G+++R+ IAR LV P +L +DE LD+
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 255 VSALLMMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGN 299
S ++ L K A G T + ++ ST +V FD ++ GN
Sbjct: 560 ESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+++R+ IAR LV +PH+L +DE LD+ S ++ L K A G T + ++
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRL 1230
Query: 282 STEVFGLFDRICLLSNGN 299
ST D I ++ NG
Sbjct: 1231 ST--IQNADLIVVIQNGK 1246
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 199 VREYLYYSALLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
V+E Y +++LP F +R L G+++R+ IAR LV P +L +DE LD+
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 255 VSALLMMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGN 299
S ++ L K A G T + ++ ST +V FD ++ GN
Sbjct: 560 ESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+++R+ IAR LV +PH+L +DE LD+ S ++ L K A G T + ++
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRL 1230
Query: 282 STEVFGLFDRICLLSNGN 299
ST D I ++ NG
Sbjct: 1231 ST--IQNADLIVVIQNGK 1246
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPYGSYGF 186
G I+G + SGKSTLL I G L A G+VF+ G + S + GF
Sbjct: 30 GEFVSIIGASGSGKSTLLY-ILGLL--DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGF 86
Query: 187 VERETTLIGSLTVREYL-------------------YYSALLQLPGFFCQRKNGLPCGER 227
V + LI LT E + Y + L L ++ L GE+
Sbjct: 87 VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQ 146
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
+RV IAR L P +LF DEP +LDS + +M K+ G +++ ++
Sbjct: 147 QRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G A SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 31 GEVIGIVGRAGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 143
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ ++ ST
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST 202
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 203 --VKNADRIIVMEKGKIVEQGK 222
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 42/229 (18%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
+VV KDL KR +++K + G + ++GP +GK+T LR I+ + S
Sbjct: 14 GAVVVKDLR-----KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 164 ARMYGEVFVNGAK-SEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ G V V G E P+ ++ E ++ EYL + A GF+
Sbjct: 69 S---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA-----GFYASSS 120
Query: 220 NGLP-----------CGER-------------RRVRIARELVMRPHVLFIDEPLYHLDSV 255
+ + GE+ R++ IAR L++ P + +DEP LD +
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 256 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
+A + LK+ + G T+L + + + EV L DRI L+ NG + G
Sbjct: 181 NAREVRKILKQASQEGLTILVS-SHNMLEVEFLCDRIALIHNGTIVETG 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 31 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 143
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ ++ ST
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST 202
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 203 --VKNADRIIVMEKGKIVEQGK 222
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 29 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 141
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ ++ ST
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST 200
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 201 --VKNADRIIVMEKGKIVEQGK 220
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ ++ ST
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST 206
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 207 --VKNADRIIVMEKGKIVEQGK 226
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-------RAIAGRLPHSARMYGEVFVNG 174
S+++++ + A P ++ GP+ GKST+ + AG + + + +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYY-------------------------SALL 209
+S++ GFV +++ ++ T+RE L Y +
Sbjct: 74 WRSQI-----GFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 269
QL +R + G+R+R+ IAR + P +L +DE LDS S ++ L L
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 270 TGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
G T L ++ ST V D+I + G
Sbjct: 188 -GRTTLVIAHRLSTIVDA--DKIYFIEKGQ 214
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 29 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 141
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ + ST
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARLST 200
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 201 --VKNADRIIVMEKGKIVEQGK 220
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++ + ST
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARLST 206
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 207 --VKNADRIIVMEKGKIVEQGK 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----GF 186
G + I+G + SGKSTL + I R Y G+V ++G + ++ G
Sbjct: 35 GEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 187 VERETTLIG------------SLTVREYLYYSALLQLPGFFCQRKNG-----------LP 223
V ++ L+ ++V + +Y + L F + + G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147
Query: 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283
G+R+R+ IAR LV P +L D+ LD S ++M + K+ G T++ ++ ST
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST 206
Query: 284 EVFGLFDRICLLSNGNTLFFGE 305
DRI ++ G + G+
Sbjct: 207 --VKNADRIIVMEKGKIVEQGK 226
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGE--VFVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSA-----------------LLQLPGFFCQR 218
+E T++ +L + E L+Y L+L + ++
Sbjct: 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L G+ + V I R L+ P ++ +DEP+ + A + + +L + G T L I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI-I 209
Query: 279 NQSSTEVFGLFDRICLLSNGNTLFFG 304
V D + ++ NG + G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGE--VFVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSA-----------------LLQLPGFFCQR 218
+E T++ +L + E L+Y L+L + ++
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L G+ + V I R L+ P ++ +DEP+ + A + + +L + G T L I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI-I 209
Query: 279 NQSSTEVFGLFDRICLLSNGNTLFFG 304
V D + ++ NG + G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 85/219 (38%), Gaps = 75/219 (34%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHS-------------------------ARMYGEV 170
G M I+GP +GKSTLLR + G L S R Y E+
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96
Query: 171 FVNGAKSEM------PYGSYGFVERET-------TLIGSLTVREYLYYSALLQLPGFFCQ 217
+ SE+ PYG G +R+ T +L R+Y S
Sbjct: 97 AFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSG---------- 144
Query: 218 RKNGLPCGERRRVRIARELVM------RPHVLFIDEP-----LYHLDSVSALLMMVTLKK 266
GE++RV++AR L P LF+DEP LYH LL +T ++
Sbjct: 145 -------GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 267 LASTGCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 304
+ C +L +N + L+ DRI LL+ G + G
Sbjct: 198 PLAV-CCVLHDLN-----LAALYADRIMLLAQGKLVACG 230
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEV--FVNGAKSEMPYGSYGFVE---- 188
G +T+I+GP SGKSTL+ I G L R+Y E N +E+ + YG V
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH--YGIVRTFQT 90
Query: 189 ----RETTLIGSLTVREY---------LYYSA-----------------LLQLPGFFCQR 218
+E T++ +L + E L+Y L+L + ++
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150
Query: 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278
L G+ + V I R L+ P ++ +D+P+ + A + + +L + G T L I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLI-I 209
Query: 279 NQSSTEVFGLFDRICLLSNGNTLFFG 304
V D + ++ NG + G
Sbjct: 210 EHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 42/209 (20%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY---- 184
+PG ++GP+ +GKST+LR + R Y G + ++G S++ S
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 185 GFVERETTLIGSLTVREYLY-------------------YSALLQLP-GFFCQ---RKNG 221
G V ++T L Y + A++ P G+ Q R
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T++ ++
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-HRL 249
Query: 282 STEVFGLFDRICLLSNGNTLFFGETLACL 310
ST V D+I ++ +G + G A L
Sbjct: 250 STVVNA--DQILVIKDGCIVERGRHEALL 276
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 34/208 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSA-----LLQLPGFFCQRKNG--------LPC 224
MP G ++ +I ++ EY Y S L Q F ++ N L
Sbjct: 110 IMP----GTIKE--NIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 221 EHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL-------------------------- 152
++ + + +KS N + GT ++G SGKST+
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNR 88
Query: 153 --LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
+R+I G +P ++ E K + YG + E + + + + Y + AL +
Sbjct: 89 NSIRSIIGIVPQDTILFNETI----KYNILYGKLDATDEEV-IKATKSAQLYDFIEALPK 143
Query: 211 LPGFFCQRKN-GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
K L GER+R+ IAR L+ P ++ DE LDS + L ++ L
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-LFTINQ 280
L GE++RV IAR L +P VL +DEP LD ++ ++ L L+ + TL +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 281 SSTEVFGLFDRICLLSNGNTLFFG 304
E+ F +I LL +G ++ G
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQG 245
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280
L G+++RV IAR L M P VL DEP LD ++ +++LA G T++ ++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 34/208 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSA-----LLQLPGFFCQRKNG--------LPC 224
MP G ++ +I ++ EY Y S L Q F ++ N L
Sbjct: 110 IMP----GTIKE--NIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 221 EHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSA-----LLQLPGFFCQRKNG--------LPC 224
MP G + +E + G ++ EY Y S L Q F ++ N L
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 221 EHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 42/284 (14%)
Query: 110 DLTVTIKGKRRYSDKVVKS--------SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL- 160
DL+ +K K +++ K++K NG A G + I+GP GK+T R + G +
Sbjct: 261 DLSKDLKTKMKWT-KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319
Query: 161 PHSARMYGEVFVNGAKSEMPYGSY-GFVER--ETTLIGSLTVREYLY--YSALLQLPGFF 215
+ E + K + + +Y G V++ E +L+ + + + L L
Sbjct: 320 ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL 379
Query: 216 CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
N L GE +++ IA L + +D+P +LD ++ +K++ +
Sbjct: 380 ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPC-PI-MQSPSDHFLRA 333
F I+ + + DRI +F GE AG P+ +++ + FLR
Sbjct: 440 FIIDHDLSIHDYIADRII-------VFKGEP-------EKAGLATSPVTLKTGMNEFLRE 485
Query: 334 INTDFDR-----------IIAMCKSWQDDHGDFSSVNMDTAVAI 366
+ F R I + Q + GD+ S+ + T +I
Sbjct: 486 LEVTFRRDAETGRPRVNKIGSYLDRVQKERGDYYSMVLSTQGSI 529
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSA-----LLQLPGFFCQRKNG--------LPC 224
MP G + +E + G ++ EY Y S L Q F ++ N L
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 221 EHLRKADKILILHQGSSYFYG-TFSELQ 247
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 37/225 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++G SGKSTLL A L GE+ ++G E ++G + +
Sbjct: 46 PGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQWRKAFGVIPQ 101
Query: 190 ETTLIGSLTVREYL-------------------YYSALLQLPGF--FCQRKNG--LPCGE 226
+ I S T R+ L S + Q PG F G L G
Sbjct: 102 KV-FIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286
++ + +AR ++ + +L +DEP HLD V+ ++ TLK+ A CT++ ++ E
Sbjct: 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILC--EARIEAM 217
Query: 287 GLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 331
D+ ++ + L L H+ F + SP +FL
Sbjct: 218 LECDQFLVIEENKVRQYDSILE-LYHYPADRFVAGFIGSPKMNFL 261
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 35/238 (14%)
Query: 94 GAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV-IMGPAKSGKSTL 152
G A ++ G V KD+T T +GK +K S +++P TV ++G + SGKST+
Sbjct: 331 GKYEAERVNG-EVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
Query: 153 LRAI-------AGRL---PHSARMYG---------------EVFVNGAKSEMPYGSYGFV 187
+G + H R Y +F + + + Y + G
Sbjct: 386 ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445
Query: 188 ERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246
RE + + + Q L + L G+R+RV IAR L+ VL +D
Sbjct: 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505
Query: 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
E LD+ S + L +L L+ S+ E D I ++ G + G
Sbjct: 506 EATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE---QADEILVVDEGEIIERG 560
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G ++ +I ++ EY Y S + QL F ++ N L
Sbjct: 110 IMP----GTIKE--NIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DHF 330
E D+I +L G++ F+G T + LQ+ F +M S D F
Sbjct: 221 EHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFDQF 266
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 44/201 (21%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL- 160
GA ++ + +K RRY I GP GKSTL+RAIA G++
Sbjct: 446 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLMRAIANGQVD 487
Query: 161 -----PHSARMYGEVFVNGAKSEMPYGSYGF---VERETTLIGSLTVREYLYYSALLQLP 212
+Y E ++G S+ + F V + + L E+ + ++ +P
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLI--EFGFTDEMIAMP 545
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ L G + ++ +AR ++ +L +DEP HLD+V+ ++ L T
Sbjct: 546 ------ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 599
Query: 273 TLLFTINQSSTEVFGLFDRIC 293
T+ S VF D +C
Sbjct: 600 TI------SHDSVF--LDNVC 612
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 197 LTVREYLYYSALLQL-PGFFCQ-RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254
LT +E + ++L L P R GL G++ ++ +A RPH++ +DEP +LD
Sbjct: 875 LTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR 934
Query: 255 VSALLMMVTLKKL 267
S + LK+
Sbjct: 935 DSLGALSKALKEF 947
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 35/208 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-------PHSARMYGEVFVNGAKS 177
V+K+ N G M I G SGK++LL I G L HS R+ F +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSA-----LLQLPGFFCQRKNG--------LPC 224
MP G ++ +IG ++ EY Y S L Q F ++ N L
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 162
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD + + + + KL + +L T S
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT---SKM 219
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQ 311
E D+I +L G++ F+G T + LQ
Sbjct: 220 EHLRKADKILILHQGSSYFYG-TFSELQ 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 42/218 (19%)
Query: 121 YSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G GKSTL + G L P S R+ +F N
Sbjct: 17 YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI---LFDN---K 70
Query: 178 EMPYGSYG-----------FVERETTLIGSLTVREYLYYSALLQLPGFFCQRK------- 219
+ Y G F + + L + ++ + + ++LP +++
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR 130
Query: 220 -----------NGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
+ L G+++RV IA LVM P VL +DEP LD + +M L ++
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 269 ST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 304
G T++ I ++ L+ D + ++ G + G
Sbjct: 191 KELGITII--IATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 51/237 (21%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR-MYGEVFVNGAK----- 176
+K+++G +L ++T I+G + SGKST++ A+ LP + R + G V G
Sbjct: 21 IKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMR 80
Query: 177 ----SEMPYGSYGFVER--ETTLIGSLTVREYLY-----------YSALLQ--------- 210
++ + V + + +L ++ V E+ +S L++
Sbjct: 81 EEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMV 140
Query: 211 -------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMV 262
L + Q G+ ++RV IA L++ P VL +DEP LD ++ A ++ +
Sbjct: 141 RLNPEAVLNSYPLQLSGGM----KQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 263 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 319
+ TL+F + + L D++ ++ GN + + T Q F N P
Sbjct: 197 LKELKKMLKITLIFVTHDIAV-AAELADKVAVIYGGNLVEYNST---FQIFKNPLHP 249
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 91
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G + +E + G ++ EY Y S + QL F ++ N L
Sbjct: 92 IMP----GTI-KENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 145
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 146 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 202
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFS 314
E D+I +L G++ F+G T + LQ+
Sbjct: 203 EHLKKADKILILHEGSSYFYG-TFSELQNLQ 232
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 34/210 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 79
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G + +E + G ++ EY Y S + QL F ++ N L
Sbjct: 80 IMP----GTI-KENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 133
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 190
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHF 313
E D+I +L G++ F+G T + LQ+
Sbjct: 191 EHLKKADKILILHEGSSYFYG-TFSELQNL 219
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQNSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G ++ +IG ++ EY Y S + QL F ++ N L
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 162
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 219
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DHF 330
E D+I +L G++ F+G T + LQ+ F +M S D F
Sbjct: 220 EHLKKADKILILHEGSSYFYG-TFSELQNL-RPDFSSKLMGCDSFDQF 265
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQNSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G ++ +IG ++ EY Y S + QL F ++ N L
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 162
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 219
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DHF 330
E D+I +L G++ F+G T + LQ+ F +M S D F
Sbjct: 220 EHLKKADKILILHEGSSYFYG-TFSELQNL-RPDFSSKLMGCDSFDQF 265
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 19/137 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
G + GP GK+TLL+ I+ L + GE+ NG G F+ E +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYL---KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 91
Query: 196 SLTVREYL---------------YYSALLQLPGFFCQRKNG-LPCGERRRVRIARELVMR 239
++V +YL AL + ++K G L G RRV++A L++
Sbjct: 92 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151
Query: 240 PHVLFIDEPLYHLDSVS 256
+ +D+P+ +D S
Sbjct: 152 AEIYVLDDPVVAIDEDS 168
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 79
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G ++ +IG ++ EY Y S + QL F ++ N L
Sbjct: 80 IMP----GTIKE--NIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 132
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G+R R+ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 133 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 189
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHF 313
E D+I +L G++ F+G T + LQ+
Sbjct: 190 EHLKKADKILILHEGSSYFYG-TFSELQNL 218
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 132 YALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE-- 188
+++P G + ++G GKS+LL A+ L ++ G V + G+ + +P ++ +
Sbjct: 26 FSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIKGSVAYVPQQAWIQNDSL 82
Query: 189 RETTLIGSLTVREYLYYSALLQ----LPGF----------FCQRKNGLPCGERRRVRIAR 234
RE L G E YY +++Q LP ++ L G+++RV +AR
Sbjct: 83 RENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 140
Query: 235 ELVMRPHVLFIDEPLYHLDS 254
+ + D+PL +D+
Sbjct: 141 AVYSNADIYLFDDPLSAVDA 160
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQ 280
L G+R+ + IAR + ++ +DEP LD + +++ L LA S T++FT +Q
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 281 SSTEVFGLFDRICLLSNGNTLFFGET 306
+ +V + ++ LL+ N FGET
Sbjct: 189 PN-QVVAIANKTLLLNKQN-FKFGET 212
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 36/216 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEM 179
V+K + PG ++GP SGK+T++ + R R G++ V+G K
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDR--GQILVDGIDIRKIKRSS 426
Query: 180 PYGSYGFVERETTLIGSLTVREYLYY------------SALLQLPGFFCQR--------- 218
S G V ++T L S TV+E L Y +A L F +
Sbjct: 427 LRSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485
Query: 219 -KNG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
NG L G+R+ + I R + P +L +DE ++D+ + + + KL G T +
Sbjct: 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSI 544
Query: 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311
++ +T D I +L +G + G+ +Q
Sbjct: 545 IIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL- 160
GA ++ + +K RRY I GP GKSTL RAIA G++
Sbjct: 446 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLXRAIANGQVD 487
Query: 161 -----PHSARMYGEVFVNGAKSEMPYGSYGF---VERETTLIGSLTVREYLYYSALLQLP 212
+Y E ++G S+ + F V + + L E+ + + P
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLI--EFGFTDEXIAXP 545
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ L G + ++ +AR ++ +L +DEP HLD+V+ ++ L T
Sbjct: 546 ------ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 599
Query: 273 TLLFTINQSSTEVFGLFDRIC 293
T+ S VF D +C
Sbjct: 600 TI------SHDSVF--LDNVC 612
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
R GL G++ ++ +A RPH++ +DEP +LD S + LK+
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL- 160
GA ++ + +K RRY I GP GKSTL RAIA G++
Sbjct: 440 GAKILLNKTQLRLKRARRYG------------------ICGPNGCGKSTLXRAIANGQVD 481
Query: 161 -----PHSARMYGEVFVNGAKSEMPYGSYGF---VERETTLIGSLTVREYLYYSALLQLP 212
+Y E ++G S+ + F V + + L E+ + + P
Sbjct: 482 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLI--EFGFTDEXIAXP 539
Query: 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 272
+ L G + ++ +AR ++ +L +DEP HLD+V+ ++ L T
Sbjct: 540 ------ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 593
Query: 273 TLLFTINQSSTEVFGLFDRIC 293
T+ S VF D +C
Sbjct: 594 TI------SHDSVF--LDNVC 606
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267
R GL G++ ++ +A RPH++ +DEP +LD S + LK+
Sbjct: 892 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+++R+ IAR L+ P +L +DE LD+ + L+ L +L G T+L ++
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 282 ST 283
ST
Sbjct: 543 ST 544
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281
L G+++R+ IAR L+ P +L +DE LD+ + L+ L +L G T+L +
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 282 ST 283
ST
Sbjct: 574 ST 575
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 219 KNG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
+NG L G+R+R+ IAR L+ +L +DE LD+ S + L +L +L+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 277 TINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312
S+ E D I ++ +G + G L+H
Sbjct: 536 AHRLSTIEK---ADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L GE +RV IA L+ + H F DEP +LD L + +++LA+ G +L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 4/165 (2%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + I+GP GK+T ++ +AG P ++ ++ V + G V + I
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKI 441
Query: 195 GSLTVREYLYYSALLQLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH 251
S + Y + LL+ G + + L GE +RV IA L+ + +DEP +
Sbjct: 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 252 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
LD L + ++ L + + + DR+ +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 47/221 (21%)
Query: 120 RYSDK---VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFV 172
+Y+D ++K N G +G + GKSTL+ I R Y G++ +
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-------RFYDVTSGQILI 400
Query: 173 NGAK-SEMPYGSY----GFVERETTLIGSLTVREYLY--------------------YSA 207
+G + GS G V+++ L S TV+E + +
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDF 459
Query: 208 LLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 263
++ LP + +R L G+++R+ IAR + P +L +DE LD S ++
Sbjct: 460 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 264 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304
L L+ TL+ ++ ST D+I ++ NG+ + G
Sbjct: 520 LDVLSKDRTTLIVA-HRLSTITHA--DKIVVIENGHIVETG 557
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 36/228 (15%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G + +E + G ++ EY Y S + QL F ++ N L
Sbjct: 110 IMP----GTI-KENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSE 163
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G++ ++ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 164 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 220
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DHF 330
E D+I +L G++ F+G T + LQ+ F +M S D F
Sbjct: 221 EHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFDQF 266
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 222 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275
L GE +RV IA L+ + H F DEP +LD L + +++LA+ G +L
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 4/165 (2%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + I+GP GK+T ++ +AG P ++ ++ V + G V + I
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKI 427
Query: 195 GSLTVREYLYYSALLQLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH 251
S + Y + LL+ G + + L GE +RV IA L+ + +DEP +
Sbjct: 428 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 487
Query: 252 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296
LD L + ++ L + + + DR+ +
Sbjct: 488 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + I+GP GK+T ++ +AG P ++ ++ V + G V + I
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKI 371
Query: 195 GSLTVREYLYYSALLQLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH 251
+ + Y + LL+ G + + N L GE +RV IA L+ + +DEP +
Sbjct: 372 DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431
Query: 252 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307
LD L + ++ L + + + DR+ + G +G L
Sbjct: 432 LDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFE-GEPGKYGRAL 486
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 209 LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268
L+L + L GE +RV IA L+ F DEP +LD L +++L+
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 269 STGCTLL 275
G ++L
Sbjct: 206 EEGKSVL 212
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGF----FCQRKNGLPCGERRRVRIARELVMR-P 240
E+E I L +RE LQ G + L GE +R+R+A ++ R
Sbjct: 164 LTEKEAQ-IARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT 222
Query: 241 HVLFI-DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
VL++ DEP L ++ TLK + G TL+ + T + D + + G
Sbjct: 223 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA--DYLIDIGPGA 280
Query: 300 TLFFGETLACLQHFSNAGFPCPIMQSPS 327
+ GE +A AG P +M P+
Sbjct: 281 GIHGGEVVA-------AGTPEEVMNDPN 301
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI-------AGRLPHSARMYGEVFVNGAKS 177
V+K N G + + G +GK++LL I G++ HS R+ F +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSW 109
Query: 178 EMPYGSYGFVERETTLIGSLTVREYLYYSAL--LQLP---GFFCQRKN--------GLPC 224
MP G ++ +IG ++ EY Y S + QL F ++ N L
Sbjct: 110 IMP----GTIKE--NIIG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSE 162
Query: 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSST 283
G++ ++ +AR + + +D P +LD ++ + + + KL + +L T S
Sbjct: 163 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT---SKM 219
Query: 284 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS-DHF 330
E D+I +L G++ F+G T + LQ+ F +M S D F
Sbjct: 220 EHLKKADKILILHEGSSYFYG-TFSELQNL-QPDFSSKLMGCDSFDQF 265
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 219 KNG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
+NG L G+R+R+ IAR L+ +L +DE LD+ S + L +L +L+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 277 TINQSSTEVFGLFDRICLLSNG 298
S+ E D I ++ +G
Sbjct: 536 AHRLSTIE---QADEIVVVEDG 554
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 135 PGTMTVIMGPAKSGKST-------LLRAIAGRL-------PHSARMY-----------GE 169
PG +T ++GP SGKST L + G+L P Y +
Sbjct: 42 PGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ 101
Query: 170 VFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNG---LPCGE 226
VF + + YG E ++ + + S L Q G+ + L G+
Sbjct: 102 VFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ--GYDTEVDEAGSQLSGGQ 159
Query: 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
R+ V +AR L+ +P VL +D+ LD+ S L
Sbjct: 160 RQAVALARALIRKPCVLILDDATSALDANSQL 191
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMY-GEVFVNGAKSEMPYGSYGFVERETT 192
G + ++G +GK+T L AIAG R ++ G+ N + V
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 193 LIGSLTVREYLY-------------------YSALLQLPGFFCQRKNGLPCGERRRVRIA 233
+ LTV E L +S +L Q L GE++ + I
Sbjct: 92 IFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIG 151
Query: 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 276
R L RP +L DEP L + + ++K+ G T+L
Sbjct: 152 RALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 59/282 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG-----AKSEMPYGS--YGF 186
PG + I+G + GK+TLLR +AG P S GE+ ++G + +P G+
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSGKTIFSKNTNLPVRERRLGY 84
Query: 187 VERETTLIGSLTVREYLYY----------------SALLQLPG---FFCQRKNGLPCGER 227
+ +E L LTV + Y A+L+L G + + L G++
Sbjct: 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQ 144
Query: 228 RRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286
+R +AR L P ++ +DEP LD + + + L + G + +F ++ E
Sbjct: 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF-VSHDREEAL 203
Query: 287 GLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCK 346
DRI ++ G I+Q+ S H L D D + + +
Sbjct: 204 QYADRIAVMKQGR----------------------ILQTASPHELYRQPADLDAALFIGE 241
Query: 347 SWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 388
+++N D R QS A A T+++R
Sbjct: 242 GIVFP----AALNADGTADCRLGRLPVQSGAPAGTRGTLLIR 279
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGF----FCQRKNGLPCGERRRVRIARELVMR-P 240
E+E I L +RE LQ G + L GE +R+R+A ++ R
Sbjct: 466 LTEKEAQ-IARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT 524
Query: 241 HVLFI-DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299
VL++ DEP L ++ TLK + G TL+ + T + D + + G
Sbjct: 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA--DYLIDIGPGA 582
Query: 300 TLFFGETLACLQHFSNAGFPCPIMQSPS 327
+ GE +A AG P +M P+
Sbjct: 583 GIHGGEVVA-------AGTPEEVMNDPN 603
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL +I G + ++K N G + +MGP +GKSTL + +AG P G
Sbjct: 7 RDLWASIDG-----ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERG 60
Query: 169 EVFVNG 174
E+ ++G
Sbjct: 61 EILLDG 66
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLP-------------------GF-------FCQRKNGLPCG 225
L G + RE + Y L + P GF + N L G
Sbjct: 103 LLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
+R+ V +AR L+ +P +L +D+ LD+ + L
Sbjct: 161 QRQAVALARALIRKPRLLILDQATSALDAGNQL 193
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLP-------------------GF-------FCQRKNGLPCG 225
L G + RE + Y L + P GF + N L G
Sbjct: 103 LLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVG 160
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
+R+ V +AR L+ +P +L +D LD+ + L
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQL 193
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 135 PGTMTVIMGPAKSGKST---LLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET 191
PG +T ++GP SGKST LL+ + + GE V + + V +E
Sbjct: 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-HTQVAAVGQEP 102
Query: 192 TLIGSLTVREYLYYSALLQLP-------------------GF-------FCQRKNGLPCG 225
L G + RE + Y L + P GF + N L G
Sbjct: 103 LLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160
Query: 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258
+R+ V +AR L+ +P +L +D LD+ + L
Sbjct: 161 QRQAVALARALIRKPRLLILDNATSALDAGNQL 193
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 110 DLTVTIKGKRRYSDKVVKS-SNGYAL-PGTMTVIMGPAKSGKSTLL-------RAIAGRL 160
+LT+ I+ R ++++ S +G + G TVI G +GKSTLL RAI +
Sbjct: 205 ELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM 264
Query: 161 PHSARMYGE 169
P + R Y E
Sbjct: 265 PGTTRDYIE 273
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ +I GPA GKST + +A +L +SA + G++
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI 156
VT+K R +SD VV+ G + +I+G SGKS+LL AI
Sbjct: 6 VTVKNFRSHSDTVVEFKEG------INLIIGQNGSGKSSLLDAI 43
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
A G + V+ GP+ GKST++R + R+P+
Sbjct: 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPN 46
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
A G + V+ GP+ GKST++R + R+P+
Sbjct: 20 AAVGRVVVLSGPSAVGKSTVVRCLRERIPN 49
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
A G + V+ GP+ GKST++R + R+P+
Sbjct: 20 AAVGRVVVLSGPSAVGKSTVVRCLRERIPN 49
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 599 YPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQ 636
Y I Y FH + I+ +E + F GQ+ SGY+
Sbjct: 357 YAIEYDFFHPWQIRSTMETRPVENLFFAGQINGTSGYE 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,079,276
Number of Sequences: 62578
Number of extensions: 615725
Number of successful extensions: 1979
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1816
Number of HSP's gapped (non-prelim): 154
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)