Query 005423
Match_columns 697
No_of_seqs 544 out of 4294
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 23:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1E-101 3E-106 889.3 56.5 553 103-681 23-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 8.7E-99 2E-103 872.8 59.8 537 121-680 36-616 (617)
3 PLN03211 ABC transporter G-25; 100.0 8.3E-97 2E-101 857.5 62.6 549 103-677 37-658 (659)
4 PLN03140 ABC transporter G fam 100.0 2.5E-96 5E-101 909.0 62.8 548 103-678 865-1467(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 6.7E-96 1E-100 907.9 61.3 539 122-677 73-694 (1394)
6 PLN03140 ABC transporter G fam 100.0 5.4E-95 1.2E-99 897.1 60.3 562 102-677 128-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-93 2.7E-98 887.7 61.7 546 104-679 758-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1.3E-94 2.7E-99 844.6 39.7 547 104-679 786-1385(1391)
9 KOG0065 Pleiotropic drug resis 100.0 3.5E-85 7.6E-90 765.3 41.2 541 122-677 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.5E-50 5.4E-55 394.5 20.0 198 105-311 2-225 (240)
11 COG1135 AbcC ABC-type metal io 100.0 1.6E-46 3.4E-51 384.9 20.3 202 106-311 2-231 (339)
12 COG1125 OpuBA ABC-type proline 100.0 4.8E-46 1E-50 371.0 20.8 208 106-335 2-236 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-45 3.7E-50 365.7 20.8 199 104-311 7-235 (263)
14 COG1120 FepC ABC-type cobalami 100.0 2.8E-45 6.1E-50 375.2 21.1 198 105-311 2-228 (258)
15 COG1136 SalX ABC-type antimicr 100.0 9.9E-45 2.2E-49 364.5 22.9 189 106-300 2-220 (226)
16 COG1116 TauB ABC-type nitrate/ 100.0 8.3E-45 1.8E-49 365.5 22.0 185 105-298 3-207 (248)
17 COG3638 ABC-type phosphate/pho 100.0 8.3E-45 1.8E-49 359.9 17.9 199 105-311 3-237 (258)
18 COG1131 CcmA ABC-type multidru 100.0 5.9E-44 1.3E-48 378.2 24.2 203 105-315 4-230 (293)
19 COG3842 PotA ABC-type spermidi 100.0 1.8E-44 3.8E-49 384.4 19.9 199 104-311 4-226 (352)
20 COG3839 MalK ABC-type sugar tr 100.0 4.7E-44 1E-48 379.3 22.6 199 105-312 3-224 (338)
21 COG1118 CysA ABC-type sulfate/ 100.0 3.3E-44 7.1E-49 367.0 18.6 199 105-312 2-228 (345)
22 COG1124 DppF ABC-type dipeptid 100.0 1.8E-43 3.9E-48 352.8 21.8 203 105-312 3-232 (252)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3E-43 6.4E-48 358.6 23.2 197 104-311 3-227 (254)
24 TIGR02314 ABC_MetN D-methionin 100.0 3.1E-42 6.7E-47 371.9 26.4 200 106-310 2-229 (343)
25 COG1117 PstB ABC-type phosphat 100.0 5.4E-43 1.2E-47 341.4 17.7 200 104-311 6-237 (253)
26 PRK11650 ugpC glycerol-3-phosp 100.0 5.7E-42 1.2E-46 372.2 26.3 199 105-311 3-224 (356)
27 COG1123 ATPase components of v 100.0 4.3E-42 9.3E-47 380.3 25.4 249 59-311 232-519 (539)
28 PRK13537 nodulation ABC transp 100.0 5E-42 1.1E-46 366.2 25.0 198 105-311 7-227 (306)
29 TIGR03265 PhnT2 putative 2-ami 100.0 7.3E-42 1.6E-46 371.0 26.6 198 105-311 4-224 (353)
30 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-42 2.8E-47 330.7 17.8 195 106-311 2-219 (231)
31 cd03261 ABC_Org_Solvent_Resist 100.0 8.7E-42 1.9E-46 350.9 24.6 196 106-310 1-225 (235)
32 COG4555 NatA ABC-type Na+ tran 100.0 7.9E-43 1.7E-47 337.3 15.4 198 106-311 2-222 (245)
33 PRK11432 fbpC ferric transport 100.0 1.2E-41 2.5E-46 369.0 26.2 198 105-311 6-226 (351)
34 COG2884 FtsE Predicted ATPase 100.0 5.4E-42 1.2E-46 328.9 18.2 192 106-305 2-220 (223)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 3.2E-41 6.9E-46 366.7 26.6 200 105-311 5-228 (362)
36 PRK09452 potA putrescine/sperm 100.0 3.7E-41 8.1E-46 367.5 26.8 198 105-311 14-234 (375)
37 cd03233 ABC_PDR_domain1 The pl 100.0 4.2E-41 9.1E-46 338.4 25.0 195 105-304 3-202 (202)
38 PRK13536 nodulation factor exp 100.0 3.6E-41 7.9E-46 363.8 26.2 200 104-312 40-262 (340)
39 PRK10851 sulfate/thiosulfate t 100.0 4.3E-41 9.3E-46 365.0 26.6 198 105-311 2-226 (353)
40 COG1122 CbiO ABC-type cobalt t 100.0 1.6E-41 3.5E-46 346.8 20.9 199 105-312 3-229 (235)
41 PRK13643 cbiO cobalt transport 100.0 5.2E-41 1.1E-45 355.6 25.1 213 106-323 2-248 (288)
42 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.3E-41 1.6E-45 340.7 24.9 197 106-307 1-219 (220)
43 TIGR01288 nodI ATP-binding ABC 100.0 6.8E-41 1.5E-45 357.2 25.8 198 105-311 4-224 (303)
44 PRK11607 potG putrescine trans 100.0 1.1E-40 2.3E-45 364.5 27.6 198 105-311 19-239 (377)
45 cd03259 ABC_Carb_Solutes_like 100.0 5E-41 1.1E-45 340.1 23.2 190 106-304 1-213 (213)
46 COG0410 LivF ABC-type branched 100.0 9.1E-41 2E-45 331.3 24.2 198 105-311 3-226 (237)
47 TIGR00960 3a0501s02 Type II (G 100.0 5.4E-41 1.2E-45 340.6 22.3 188 106-300 2-216 (216)
48 cd03296 ABC_CysA_sulfate_impor 100.0 1.4E-40 2.9E-45 343.0 25.6 197 105-310 2-225 (239)
49 cd03265 ABC_DrrA DrrA is the A 100.0 7.6E-41 1.7E-45 340.5 23.5 194 106-308 1-218 (220)
50 cd03218 ABC_YhbG The ABC trans 100.0 9.5E-41 2.1E-45 342.3 24.1 196 106-310 1-221 (232)
51 PRK11000 maltose/maltodextrin 100.0 1E-40 2.2E-45 364.5 25.9 198 105-311 3-223 (369)
52 PRK11153 metN DL-methionine tr 100.0 1.2E-40 2.7E-45 360.7 26.1 201 106-311 2-230 (343)
53 PRK13637 cbiO cobalt transport 100.0 2.5E-40 5.4E-45 350.2 27.2 203 105-311 2-234 (287)
54 PRK13631 cbiO cobalt transport 100.0 2.3E-40 4.9E-45 355.1 27.1 213 104-321 20-278 (320)
55 cd03256 ABC_PhnC_transporter A 100.0 1.4E-40 2.9E-45 342.9 24.4 196 106-309 1-232 (241)
56 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-40 2.7E-45 341.7 24.1 200 106-310 2-229 (233)
57 cd03224 ABC_TM1139_LivF_branch 100.0 1E-40 2.3E-45 339.6 23.1 196 106-310 1-220 (222)
58 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-40 2.6E-45 342.4 23.7 196 106-310 1-231 (236)
59 PRK13634 cbiO cobalt transport 100.0 2.1E-40 4.6E-45 351.3 25.7 201 105-310 2-234 (290)
60 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-40 2.9E-45 343.5 22.6 196 106-309 2-233 (243)
61 cd03301 ABC_MalK_N The N-termi 100.0 2.3E-40 5.1E-45 335.0 23.8 190 106-304 1-213 (213)
62 cd03268 ABC_BcrA_bacitracin_re 100.0 1.4E-40 3E-45 335.7 21.9 190 106-304 1-208 (208)
63 PRK13651 cobalt transporter AT 100.0 2.6E-40 5.7E-45 352.5 25.1 202 105-311 2-254 (305)
64 TIGR01186 proV glycine betaine 100.0 2.2E-40 4.8E-45 359.4 24.3 186 122-311 5-219 (363)
65 cd03263 ABC_subfamily_A The AB 100.0 2.4E-40 5.2E-45 336.6 23.1 196 106-309 1-219 (220)
66 PRK09493 glnQ glutamine ABC tr 100.0 4.4E-40 9.5E-45 339.3 25.3 196 106-310 2-224 (240)
67 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-40 7.5E-45 343.6 24.7 195 104-307 11-219 (257)
68 PRK15079 oligopeptide ABC tran 100.0 4.5E-40 9.8E-45 354.2 26.4 204 104-311 7-251 (331)
69 PRK13647 cbiO cobalt transport 100.0 6.1E-40 1.3E-44 345.1 26.5 197 105-309 4-225 (274)
70 PRK11264 putative amino-acid A 100.0 4.3E-40 9.4E-45 341.3 25.0 197 105-310 3-232 (250)
71 TIGR01188 drrA daunorubicin re 100.0 2.1E-40 4.5E-45 353.3 23.2 186 123-312 6-214 (302)
72 PRK13646 cbiO cobalt transport 100.0 5E-40 1.1E-44 347.8 25.7 202 105-311 2-235 (286)
73 cd03260 ABC_PstB_phosphate_tra 100.0 3.1E-40 6.8E-45 337.5 23.4 192 106-308 1-226 (227)
74 COG4172 ABC-type uncharacteriz 100.0 2.8E-40 6.1E-45 346.7 23.3 243 59-311 235-516 (534)
75 PRK11831 putative ABC transpor 100.0 5.4E-40 1.2E-44 344.6 25.6 197 105-310 7-232 (269)
76 cd03269 ABC_putative_ATPase Th 100.0 2.8E-40 6E-45 333.9 22.1 190 106-304 1-210 (210)
77 PRK09536 btuD corrinoid ABC tr 100.0 4.8E-40 1E-44 361.0 25.7 197 105-310 3-227 (402)
78 TIGR03522 GldA_ABC_ATP gliding 100.0 5.8E-40 1.2E-44 349.7 25.4 197 105-311 2-221 (301)
79 PRK11614 livF leucine/isoleuci 100.0 4.3E-40 9.2E-45 338.8 23.5 197 105-310 5-225 (237)
80 cd03266 ABC_NatA_sodium_export 100.0 4.2E-40 9E-45 334.4 23.0 194 106-304 2-218 (218)
81 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-40 6.5E-45 332.6 21.5 186 108-301 2-205 (205)
82 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.2E-40 1.6E-44 338.2 24.6 197 106-310 1-224 (242)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.6E-40 7.7E-45 334.9 21.6 189 106-300 1-218 (218)
84 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.9E-40 1.1E-44 344.9 23.0 196 107-311 26-250 (269)
85 PRK13650 cbiO cobalt transport 100.0 9.3E-40 2E-44 344.6 25.1 210 105-321 4-242 (279)
86 PRK09473 oppD oligopeptide tra 100.0 1.6E-39 3.5E-44 349.9 27.2 206 104-311 11-251 (330)
87 PRK11300 livG leucine/isoleuci 100.0 9.1E-40 2E-44 339.9 24.4 197 105-310 5-242 (255)
88 TIGR02673 FtsE cell division A 100.0 7.4E-40 1.6E-44 331.6 22.8 186 106-299 2-214 (214)
89 PRK11308 dppF dipeptide transp 100.0 1.7E-39 3.8E-44 349.3 27.0 203 105-311 5-244 (327)
90 PRK11124 artP arginine transpo 100.0 9.7E-40 2.1E-44 337.2 24.0 196 105-309 2-228 (242)
91 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-39 4.1E-44 324.3 25.1 188 104-304 2-194 (194)
92 TIGR00972 3a0107s01c2 phosphat 100.0 1.6E-39 3.4E-44 336.7 25.4 197 106-310 2-231 (247)
93 PRK10619 histidine/lysine/argi 100.0 1.4E-39 3.1E-44 339.1 25.2 197 105-310 5-240 (257)
94 PRK13641 cbiO cobalt transport 100.0 1.5E-39 3.2E-44 344.3 25.6 202 105-311 2-234 (287)
95 PRK11248 tauB taurine transpor 100.0 1.9E-39 4E-44 337.9 25.8 193 106-307 2-216 (255)
96 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-39 2.7E-44 333.8 23.4 195 106-309 1-219 (230)
97 PRK10895 lipopolysaccharide AB 100.0 1.2E-39 2.7E-44 336.2 23.6 197 105-310 3-225 (241)
98 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-39 4.1E-44 323.7 24.0 186 105-304 3-192 (192)
99 cd03292 ABC_FtsE_transporter F 100.0 1E-39 2.2E-44 330.5 22.3 187 106-300 1-214 (214)
100 COG0411 LivG ABC-type branched 100.0 2.7E-40 5.7E-45 330.4 17.8 198 105-311 4-239 (250)
101 COG0444 DppD ABC-type dipeptid 100.0 1E-39 2.2E-44 339.2 22.7 204 106-311 2-243 (316)
102 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-39 6.4E-44 332.4 25.8 196 106-311 2-221 (236)
103 TIGR03411 urea_trans_UrtD urea 100.0 1.9E-39 4.2E-44 334.8 24.5 196 105-310 2-230 (242)
104 PRK13649 cbiO cobalt transport 100.0 3.2E-39 7E-44 340.6 26.4 202 105-311 2-234 (280)
105 PRK11629 lolD lipoprotein tran 100.0 4.1E-39 8.9E-44 330.7 26.3 196 105-306 5-229 (233)
106 TIGR03005 ectoine_ehuA ectoine 100.0 2.4E-39 5.2E-44 336.3 24.8 196 106-310 1-235 (252)
107 TIGR03740 galliderm_ABC gallid 100.0 2.5E-39 5.5E-44 330.0 24.4 194 106-308 1-210 (223)
108 PRK13636 cbiO cobalt transport 100.0 3E-39 6.5E-44 341.4 25.7 209 105-321 5-244 (283)
109 TIGR01257 rim_protein retinal- 100.0 4.5E-37 9.8E-42 384.0 49.0 202 104-313 927-1151(2272)
110 cd03264 ABC_drug_resistance_li 100.0 1.4E-39 3.1E-44 328.9 21.9 188 106-304 1-211 (211)
111 PRK10908 cell division protein 100.0 2.7E-39 6E-44 329.5 23.9 188 106-301 2-216 (222)
112 cd03257 ABC_NikE_OppD_transpor 100.0 3.3E-39 7.1E-44 329.7 24.3 194 106-304 2-228 (228)
113 PRK11022 dppD dipeptide transp 100.0 3.8E-39 8.3E-44 346.6 26.0 205 105-311 3-243 (326)
114 PRK09984 phosphonate/organopho 100.0 3.1E-39 6.7E-44 337.5 24.5 199 105-309 4-240 (262)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 3.5E-39 7.5E-44 328.3 24.0 190 106-301 2-220 (221)
116 COG1137 YhbG ABC-type (unclass 100.0 1E-40 2.3E-45 322.2 12.0 198 105-311 4-228 (243)
117 cd03262 ABC_HisP_GlnQ_permease 100.0 2.4E-39 5.1E-44 327.5 22.6 186 106-300 1-213 (213)
118 PRK11231 fecE iron-dicitrate t 100.0 3E-39 6.6E-44 336.2 24.0 197 105-310 2-226 (255)
119 PRK13635 cbiO cobalt transport 100.0 5E-39 1.1E-43 339.0 25.8 199 105-311 5-229 (279)
120 TIGR01978 sufC FeS assembly AT 100.0 4.6E-39 9.9E-44 332.0 25.0 196 106-310 1-233 (243)
121 PRK13639 cbiO cobalt transport 100.0 7.2E-39 1.6E-43 337.1 26.7 197 106-311 2-226 (275)
122 cd03234 ABCG_White The White s 100.0 4.3E-39 9.4E-44 329.0 24.2 196 105-304 3-226 (226)
123 PRK10575 iron-hydroxamate tran 100.0 3.5E-39 7.7E-44 337.7 24.0 197 105-310 11-236 (265)
124 PRK13548 hmuV hemin importer A 100.0 5.9E-39 1.3E-43 334.7 25.6 197 105-310 2-229 (258)
125 PRK14250 phosphate ABC transpo 100.0 4.6E-39 1E-43 332.1 24.6 196 105-310 3-220 (241)
126 cd03235 ABC_Metallic_Cations A 100.0 1.1E-39 2.4E-44 330.3 19.2 187 108-304 2-213 (213)
127 PRK10070 glycine betaine trans 100.0 4.9E-39 1.1E-43 352.8 25.8 184 124-311 42-254 (400)
128 KOG0058 Peptide exporter, ABC 100.0 7.6E-40 1.7E-44 367.2 19.6 199 104-311 464-691 (716)
129 PRK13652 cbiO cobalt transport 100.0 7.6E-39 1.6E-43 337.3 25.9 199 105-311 3-227 (277)
130 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-39 5.9E-44 326.8 21.6 185 108-299 2-211 (211)
131 PRK13644 cbiO cobalt transport 100.0 5.5E-39 1.2E-43 337.8 24.8 196 106-310 2-223 (274)
132 PRK13638 cbiO cobalt transport 100.0 4E-39 8.6E-44 338.4 23.6 196 106-310 2-224 (271)
133 PRK14273 phosphate ABC transpo 100.0 7.1E-39 1.5E-43 333.2 25.1 198 105-310 7-237 (254)
134 PRK14267 phosphate ABC transpo 100.0 5.9E-39 1.3E-43 333.5 24.5 199 105-310 4-236 (253)
135 PRK14268 phosphate ABC transpo 100.0 8.2E-39 1.8E-43 333.6 25.6 199 104-310 11-241 (258)
136 TIGR02769 nickel_nikE nickel i 100.0 6.4E-39 1.4E-43 335.7 24.8 203 105-311 2-240 (265)
137 PRK14242 phosphate transporter 100.0 8.8E-39 1.9E-43 332.2 25.3 199 104-310 5-236 (253)
138 PRK11144 modC molybdate transp 100.0 6.8E-39 1.5E-43 348.3 25.5 194 106-311 2-218 (352)
139 PRK15093 antimicrobial peptide 100.0 9.3E-39 2E-43 344.5 26.3 205 105-311 3-248 (330)
140 cd03230 ABC_DR_subfamily_A Thi 100.0 5.8E-39 1.3E-43 314.9 22.4 169 106-300 1-173 (173)
141 COG2274 SunT ABC-type bacterio 100.0 1.8E-39 3.9E-44 376.4 22.0 199 104-312 470-697 (709)
142 PRK10253 iron-enterobactin tra 100.0 9.2E-39 2E-43 334.5 25.0 198 104-310 6-232 (265)
143 COG4559 ABC-type hemin transpo 100.0 2.6E-39 5.6E-44 315.1 19.2 197 106-311 2-230 (259)
144 PRK13648 cbiO cobalt transport 100.0 1.7E-38 3.7E-43 333.2 26.9 209 105-321 7-244 (269)
145 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.6E-39 2.1E-43 320.7 24.0 188 106-315 1-197 (200)
146 COG1123 ATPase components of v 100.0 4.4E-39 9.6E-44 356.4 23.5 207 105-313 5-246 (539)
147 PRK13645 cbiO cobalt transport 100.0 8.5E-39 1.8E-43 338.9 24.5 201 105-310 6-239 (289)
148 TIGR03873 F420-0_ABC_ATP propo 100.0 8.8E-39 1.9E-43 332.9 24.2 196 106-310 2-225 (256)
149 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.8E-39 1.5E-43 324.0 22.6 188 106-304 1-211 (211)
150 TIGR03415 ABC_choXWV_ATP choli 100.0 9.3E-39 2E-43 348.4 25.3 185 122-310 36-253 (382)
151 PRK14247 phosphate ABC transpo 100.0 1.6E-38 3.5E-43 329.7 25.3 199 105-310 3-233 (250)
152 PRK10771 thiQ thiamine transpo 100.0 1.5E-38 3.3E-43 326.3 24.6 195 106-311 2-219 (232)
153 PRK13640 cbiO cobalt transport 100.0 1.6E-38 3.4E-43 335.7 25.4 202 105-311 5-232 (282)
154 cd03300 ABC_PotA_N PotA is an 100.0 1.8E-38 4E-43 325.8 24.6 196 106-310 1-219 (232)
155 PRK13633 cobalt transporter AT 100.0 1.8E-38 3.8E-43 335.0 25.0 201 105-311 4-233 (280)
156 COG4175 ProV ABC-type proline/ 100.0 3.3E-39 7E-44 330.5 18.5 204 104-311 3-254 (386)
157 TIGR01277 thiQ thiamine ABC tr 100.0 1.6E-38 3.5E-43 322.0 23.5 189 106-305 1-212 (213)
158 PRK13632 cbiO cobalt transport 100.0 2.1E-38 4.6E-43 332.8 25.0 199 104-310 6-230 (271)
159 PRK15112 antimicrobial peptide 100.0 2.2E-38 4.7E-43 332.1 24.9 202 105-310 4-238 (267)
160 PRK10584 putative ABC transpor 100.0 2.8E-38 6E-43 323.3 24.9 193 105-303 6-227 (228)
161 cd03299 ABC_ModC_like Archeal 100.0 2.7E-38 5.9E-43 325.2 24.6 195 106-310 1-218 (235)
162 TIGR02142 modC_ABC molybdenum 100.0 1.8E-38 4E-43 345.3 24.5 191 110-311 4-221 (354)
163 TIGR00968 3a0106s01 sulfate AB 100.0 2.5E-38 5.5E-43 325.8 24.3 196 106-310 1-219 (237)
164 PRK10744 pstB phosphate transp 100.0 2.7E-38 5.9E-43 330.0 24.8 199 104-310 12-243 (260)
165 COG4988 CydD ABC-type transpor 100.0 7.2E-39 1.6E-43 353.4 21.3 198 103-311 318-543 (559)
166 PRK14269 phosphate ABC transpo 100.0 3.2E-38 7E-43 326.8 24.9 198 105-310 2-229 (246)
167 PRK14256 phosphate ABC transpo 100.0 4.9E-38 1.1E-42 326.5 26.3 199 105-310 4-235 (252)
168 PRK14274 phosphate ABC transpo 100.0 3.3E-38 7.2E-43 329.1 25.0 200 104-311 11-243 (259)
169 PRK14272 phosphate ABC transpo 100.0 2.9E-38 6.3E-43 328.0 24.4 200 105-311 4-236 (252)
170 KOG0055 Multidrug/pheromone ex 100.0 4.8E-37 1E-41 361.8 37.6 199 104-311 349-576 (1228)
171 cd03229 ABC_Class3 This class 100.0 2E-38 4.3E-43 312.6 21.8 170 106-299 1-178 (178)
172 cd03215 ABC_Carb_Monos_II This 100.0 2.5E-38 5.5E-43 312.9 22.6 170 105-300 4-182 (182)
173 PRK14270 phosphate ABC transpo 100.0 3.8E-38 8.3E-43 327.1 25.0 198 105-310 4-234 (251)
174 PRK14245 phosphate ABC transpo 100.0 4.7E-38 1E-42 326.2 25.6 198 105-311 3-234 (250)
175 cd03252 ABCC_Hemolysin The ABC 100.0 2.3E-38 5E-43 325.8 23.0 196 106-311 1-225 (237)
176 PRK14235 phosphate transporter 100.0 4.6E-38 1E-42 329.6 25.7 199 104-310 18-250 (267)
177 PRK14239 phosphate transporter 100.0 4.6E-38 9.9E-43 326.5 25.2 198 105-310 5-235 (252)
178 PRK11701 phnK phosphonate C-P 100.0 3.9E-38 8.4E-43 328.4 24.7 197 105-310 6-240 (258)
179 TIGR01184 ntrCD nitrate transp 100.0 1.5E-38 3.3E-43 326.1 21.2 180 126-309 1-202 (230)
180 PRK14241 phosphate transporter 100.0 4.2E-38 9.1E-43 328.2 24.8 200 105-311 4-242 (258)
181 PRK14240 phosphate transporter 100.0 5.2E-38 1.1E-42 325.8 25.3 198 105-310 3-233 (250)
182 PRK13547 hmuV hemin importer A 100.0 2.7E-38 5.9E-43 332.0 23.4 199 106-310 2-243 (272)
183 PRK13642 cbiO cobalt transport 100.0 5.4E-38 1.2E-42 330.8 25.4 199 105-310 4-228 (277)
184 PRK14259 phosphate ABC transpo 100.0 3.2E-38 7E-43 331.2 23.2 200 104-311 12-253 (269)
185 PRK14248 phosphate ABC transpo 100.0 6.2E-38 1.3E-42 328.8 25.1 198 105-310 21-251 (268)
186 PRK14249 phosphate ABC transpo 100.0 6E-38 1.3E-42 325.7 24.8 198 105-310 4-234 (251)
187 COG4181 Predicted ABC-type tra 100.0 6.8E-39 1.5E-43 302.3 15.7 192 105-302 6-226 (228)
188 PRK15439 autoinducer 2 ABC tra 100.0 5.5E-38 1.2E-42 357.6 26.3 197 105-310 11-228 (510)
189 PRK14262 phosphate ABC transpo 100.0 7.8E-38 1.7E-42 324.5 24.9 199 105-311 3-234 (250)
190 cd03246 ABCC_Protease_Secretio 100.0 4.2E-38 9E-43 308.9 21.2 168 106-300 1-173 (173)
191 PRK10418 nikD nickel transport 100.0 1.1E-37 2.5E-42 324.3 25.6 199 105-310 4-229 (254)
192 PRK11174 cysteine/glutathione 100.0 4E-38 8.6E-43 364.9 24.6 195 105-311 349-572 (588)
193 PRK14255 phosphate ABC transpo 100.0 1.1E-37 2.4E-42 323.7 25.2 198 105-310 5-235 (252)
194 PRK14244 phosphate ABC transpo 100.0 7.7E-38 1.7E-42 324.8 24.0 198 105-310 5-236 (251)
195 PRK14253 phosphate ABC transpo 100.0 6.4E-38 1.4E-42 325.0 23.3 198 105-310 3-232 (249)
196 cd03267 ABC_NatA_like Similar 100.0 4.9E-38 1.1E-42 323.6 22.1 179 122-304 33-236 (236)
197 PRK14237 phosphate transporter 100.0 1.3E-37 2.8E-42 326.2 25.8 199 104-310 19-250 (267)
198 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.9E-38 8.5E-43 324.3 21.4 198 106-312 1-227 (238)
199 cd03297 ABC_ModC_molybdenum_tr 100.0 6.2E-38 1.3E-42 317.8 22.4 183 110-304 5-214 (214)
200 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-38 1.1E-42 322.6 21.9 196 106-311 1-225 (234)
201 PRK14275 phosphate ABC transpo 100.0 1.2E-37 2.5E-42 329.7 25.1 200 103-310 37-269 (286)
202 cd03247 ABCC_cytochrome_bd The 100.0 4.7E-38 1E-42 309.9 20.6 174 106-304 1-178 (178)
203 cd03254 ABCC_Glucan_exporter_l 100.0 4.7E-38 1E-42 321.7 21.3 196 105-311 2-226 (229)
204 PRK10762 D-ribose transporter 100.0 7E-38 1.5E-42 356.2 24.9 196 105-309 4-228 (501)
205 COG4152 ABC-type uncharacteriz 100.0 1.1E-38 2.4E-43 316.4 16.0 200 105-313 2-221 (300)
206 CHL00131 ycf16 sulfate ABC tra 100.0 2E-37 4.3E-42 321.7 26.1 196 105-309 7-239 (252)
207 PRK09700 D-allose transporter 100.0 7E-38 1.5E-42 356.9 24.8 197 105-310 5-233 (510)
208 PRK14238 phosphate transporter 100.0 1.4E-37 3.1E-42 326.5 24.9 198 105-310 24-254 (271)
209 PRK14257 phosphate ABC transpo 100.0 1.4E-37 3.1E-42 334.6 25.4 202 104-311 79-313 (329)
210 KOG0057 Mitochondrial Fe/S clu 100.0 3.7E-38 8E-43 342.8 20.7 197 103-311 349-574 (591)
211 PRK14236 phosphate transporter 100.0 1.9E-37 4.2E-42 325.8 25.5 198 105-310 25-255 (272)
212 PRK14251 phosphate ABC transpo 100.0 1.5E-37 3.3E-42 322.5 24.4 198 105-310 4-234 (251)
213 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-37 3.7E-42 322.5 24.8 197 105-310 3-237 (253)
214 PRK14265 phosphate ABC transpo 100.0 1.3E-37 2.8E-42 327.5 24.1 200 103-310 18-257 (274)
215 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.3E-38 1.4E-42 369.3 24.1 195 105-311 451-673 (686)
216 PRK14254 phosphate ABC transpo 100.0 2.5E-37 5.4E-42 327.0 26.2 200 103-310 37-268 (285)
217 PRK13549 xylose transporter AT 100.0 7.6E-38 1.7E-42 356.2 23.9 198 105-309 5-230 (506)
218 PRK14271 phosphate ABC transpo 100.0 2.4E-37 5.1E-42 325.7 25.8 199 105-311 21-251 (276)
219 PRK14260 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 323.9 24.2 198 105-310 7-242 (259)
220 COG4598 HisP ABC-type histidin 100.0 6.1E-39 1.3E-43 304.6 12.0 198 105-311 6-241 (256)
221 PRK14261 phosphate ABC transpo 100.0 2.2E-37 4.8E-42 321.8 24.7 198 105-310 6-236 (253)
222 PRK14258 phosphate ABC transpo 100.0 2.4E-37 5.3E-42 323.1 25.0 200 105-311 7-245 (261)
223 PRK10419 nikE nickel transport 100.0 2.2E-37 4.9E-42 324.6 24.5 203 105-311 3-241 (268)
224 COG4525 TauB ABC-type taurine 100.0 1.1E-37 2.4E-42 299.9 20.1 201 105-312 3-225 (259)
225 TIGR02770 nickel_nikD nickel i 100.0 1.5E-37 3.2E-42 318.7 21.8 182 125-310 1-214 (230)
226 PRK10261 glutathione transport 100.0 2.9E-37 6.3E-42 359.0 26.9 203 104-310 312-552 (623)
227 cd03253 ABCC_ATM1_transporter 100.0 2.1E-37 4.6E-42 318.3 22.8 194 106-310 1-223 (236)
228 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-37 4E-42 315.4 21.5 190 105-304 2-220 (220)
229 PRK15056 manganese/iron transp 100.0 3.6E-37 7.7E-42 323.8 24.1 197 105-310 6-229 (272)
230 PRK14243 phosphate transporter 100.0 4.3E-37 9.4E-42 321.7 24.6 199 105-311 10-248 (264)
231 PRK11176 lipid transporter ATP 100.0 1.1E-37 2.5E-42 360.6 22.3 197 105-311 341-567 (582)
232 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.5E-37 5.3E-42 324.8 22.4 196 105-311 2-225 (275)
233 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-37 2.3E-42 368.9 22.1 195 105-311 477-700 (710)
234 TIGR02982 heterocyst_DevA ABC 100.0 4E-37 8.7E-42 313.3 23.3 189 106-300 2-219 (220)
235 TIGR03608 L_ocin_972_ABC putat 100.0 1.8E-37 4E-42 312.1 20.4 178 108-295 1-206 (206)
236 COG1132 MdlB ABC-type multidru 100.0 1.6E-37 3.5E-42 358.3 22.4 197 104-311 327-552 (567)
237 PRK10790 putative multidrug tr 100.0 2.5E-37 5.4E-42 358.5 24.0 196 105-311 340-563 (592)
238 COG4987 CydC ABC-type transpor 100.0 8E-38 1.7E-42 340.0 18.2 197 105-311 336-561 (573)
239 PRK09544 znuC high-affinity zi 100.0 5.7E-37 1.2E-41 318.5 23.8 190 105-310 4-208 (251)
240 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-37 5.4E-42 314.7 20.2 191 105-305 2-220 (221)
241 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.8E-37 1.7E-41 308.2 23.6 190 105-306 6-207 (207)
242 PRK10982 galactose/methyl gala 100.0 2.9E-37 6.3E-42 350.3 22.8 192 109-309 2-221 (491)
243 PRK14263 phosphate ABC transpo 100.0 1.1E-36 2.4E-41 318.1 25.3 200 104-311 7-245 (261)
244 cd03214 ABC_Iron-Siderophores_ 100.0 3.4E-37 7.4E-42 304.3 20.1 174 107-304 1-180 (180)
245 PRK13543 cytochrome c biogenes 100.0 9.2E-37 2E-41 309.5 23.5 185 104-297 10-212 (214)
246 TIGR03375 type_I_sec_LssB type 100.0 3E-37 6.6E-42 364.0 23.1 198 105-312 463-689 (694)
247 PRK13546 teichoic acids export 100.0 1.9E-36 4.1E-41 316.6 26.4 196 104-311 3-232 (264)
248 cd03231 ABC_CcmA_heme_exporter 100.0 6.1E-37 1.3E-41 307.8 21.7 181 106-295 1-198 (201)
249 PRK11160 cysteine/glutathione 100.0 4.1E-37 8.9E-42 355.2 23.2 198 104-311 337-562 (574)
250 PRK11288 araG L-arabinose tran 100.0 8.5E-37 1.8E-41 347.3 25.4 193 105-306 4-224 (501)
251 TIGR03269 met_CoM_red_A2 methy 100.0 6E-37 1.3E-41 350.1 24.1 203 105-311 279-517 (520)
252 PRK15134 microcin C ABC transp 100.0 9.3E-37 2E-41 349.1 25.5 202 104-310 274-514 (529)
253 PRK14246 phosphate ABC transpo 100.0 8.3E-37 1.8E-41 318.4 22.9 200 105-311 10-241 (257)
254 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-36 2.4E-41 296.2 22.2 156 106-302 1-162 (163)
255 PRK09580 sufC cysteine desulfu 100.0 2E-36 4.2E-41 313.4 25.4 202 106-317 2-240 (248)
256 TIGR01193 bacteriocin_ABC ABC- 100.0 3E-37 6.5E-42 364.8 22.0 195 105-311 473-697 (708)
257 PRK10261 glutathione transport 100.0 6E-37 1.3E-41 356.4 24.2 201 105-310 12-257 (623)
258 TIGR02633 xylG D-xylose ABC tr 100.0 6.6E-37 1.4E-41 348.1 24.0 197 106-309 2-228 (500)
259 PRK10247 putative ABC transpor 100.0 7.9E-37 1.7E-41 312.3 22.1 190 105-305 7-221 (225)
260 PRK14266 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 314.8 24.0 198 105-310 3-233 (250)
261 PRK14252 phosphate ABC transpo 100.0 1.9E-36 4.1E-41 317.1 24.8 199 104-310 15-248 (265)
262 TIGR00958 3a01208 Conjugate Tr 100.0 3.7E-37 8E-42 363.5 21.7 196 105-311 478-702 (711)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.1E-36 2.4E-41 311.1 22.4 183 106-304 23-224 (224)
264 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-36 2.5E-41 296.9 21.3 164 106-299 1-164 (166)
265 PRK13538 cytochrome c biogenes 100.0 1.3E-36 2.9E-41 306.0 22.4 181 106-295 2-202 (204)
266 cd03228 ABCC_MRP_Like The MRP 100.0 9.3E-37 2E-41 298.8 20.5 166 106-299 1-171 (171)
267 COG4161 ArtP ABC-type arginine 100.0 3.4E-37 7.3E-42 288.0 16.4 194 105-307 2-226 (242)
268 PRK03695 vitamin B12-transport 100.0 1.3E-36 2.8E-41 315.3 22.6 181 125-310 11-221 (248)
269 TIGR01842 type_I_sec_PrtD type 100.0 1.4E-36 3E-41 348.9 24.8 198 105-311 316-542 (544)
270 PRK14264 phosphate ABC transpo 100.0 2E-36 4.4E-41 323.0 24.0 199 104-310 44-288 (305)
271 cd03288 ABCC_SUR2 The SUR doma 100.0 3.3E-36 7.2E-41 313.8 24.7 198 104-311 18-243 (257)
272 PRK15134 microcin C ABC transp 100.0 2.3E-36 4.9E-41 345.9 25.3 205 105-311 5-246 (529)
273 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-36 2.9E-41 352.1 23.6 196 105-311 334-558 (588)
274 PRK10938 putative molybdenum t 100.0 1.4E-36 2.9E-41 344.8 22.8 197 105-310 3-223 (490)
275 TIGR01189 ccmA heme ABC export 100.0 2.3E-36 5E-41 302.8 21.6 178 106-294 1-197 (198)
276 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-36 4E-41 346.0 23.7 199 106-313 1-260 (520)
277 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-36 2.9E-41 310.5 19.5 188 104-300 10-226 (226)
278 COG1129 MglA ABC-type sugar tr 100.0 2.8E-36 6.1E-41 332.1 23.2 194 104-306 7-229 (500)
279 PRK13549 xylose transporter AT 100.0 2.3E-36 4.9E-41 344.2 22.9 200 104-309 258-492 (506)
280 PRK09700 D-allose transporter 100.0 2.2E-36 4.7E-41 344.7 22.6 192 105-307 265-494 (510)
281 TIGR02324 CP_lyasePhnL phospho 100.0 5.8E-36 1.3E-40 305.4 22.9 187 106-296 2-223 (224)
282 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-36 5.9E-41 303.5 20.2 180 106-299 1-204 (204)
283 PRK13539 cytochrome c biogenes 100.0 5.4E-36 1.2E-40 302.3 22.4 182 105-297 2-200 (207)
284 TIGR01257 rim_protein retinal- 100.0 3.3E-36 7.2E-41 376.3 25.4 204 104-314 1936-2162(2272)
285 COG4148 ModC ABC-type molybdat 100.0 3.9E-37 8.4E-42 310.4 13.8 180 128-311 16-218 (352)
286 TIGR02203 MsbA_lipidA lipid A 100.0 2.3E-36 5E-41 349.0 21.7 197 105-311 330-556 (571)
287 KOG0055 Multidrug/pheromone ex 100.0 1.2E-36 2.7E-41 358.3 19.7 198 105-311 987-1213(1228)
288 TIGR01846 type_I_sec_HlyB type 100.0 3.1E-36 6.6E-41 355.4 22.9 197 105-311 455-680 (694)
289 TIGR03771 anch_rpt_ABC anchore 100.0 4.5E-36 9.7E-41 306.4 20.2 175 131-310 1-200 (223)
290 PRK13545 tagH teichoic acids e 100.0 1.5E-35 3.2E-40 329.7 25.9 196 104-313 20-234 (549)
291 PRK13540 cytochrome c biogenes 100.0 8.2E-36 1.8E-40 299.3 21.6 178 106-293 2-197 (200)
292 PRK10789 putative multidrug tr 100.0 4.8E-36 1E-40 346.1 22.5 197 105-311 313-538 (569)
293 TIGR01192 chvA glucan exporter 100.0 6.7E-36 1.5E-40 345.7 23.7 196 105-311 334-558 (585)
294 TIGR02204 MsbA_rel ABC transpo 100.0 5.6E-36 1.2E-40 346.2 22.6 199 104-311 336-563 (576)
295 COG4608 AppF ABC-type oligopep 100.0 7.1E-36 1.5E-40 304.5 20.2 190 105-311 4-199 (268)
296 PTZ00265 multidrug resistance 100.0 5.6E-36 1.2E-40 373.5 21.2 202 105-311 1165-1452(1466)
297 PRK11288 araG L-arabinose tran 100.0 1.2E-35 2.5E-40 338.0 21.9 192 105-309 257-483 (501)
298 COG4618 ArpD ABC-type protease 100.0 6.7E-36 1.4E-40 322.3 18.6 203 104-315 333-564 (580)
299 PRK10762 D-ribose transporter 100.0 1.7E-35 3.7E-40 336.6 22.9 191 105-309 257-482 (501)
300 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-35 2.8E-40 337.5 22.0 198 104-307 256-488 (500)
301 PRK10535 macrolide transporter 100.0 1.9E-34 4E-39 336.8 31.4 199 105-309 4-230 (648)
302 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.8E-35 1.7E-39 307.0 25.4 187 103-311 37-247 (282)
303 TIGR01166 cbiO cobalt transpor 100.0 2.3E-35 5.1E-40 293.5 19.4 156 123-282 5-188 (190)
304 cd03290 ABCC_SUR1_N The SUR do 100.0 4E-35 8.6E-40 298.1 21.0 183 107-299 2-218 (218)
305 COG4604 CeuD ABC-type enteroch 100.0 4.1E-36 8.8E-41 289.6 10.7 197 106-311 2-225 (252)
306 TIGR01187 potA spermidine/putr 100.0 5.9E-35 1.3E-39 314.3 20.7 167 141-311 1-190 (325)
307 PRK11819 putative ABC transpor 100.0 1.1E-34 2.3E-39 333.8 24.1 188 105-310 6-249 (556)
308 TIGR01194 cyc_pep_trnsptr cycl 100.0 8E-35 1.7E-39 334.9 23.0 194 104-303 336-551 (555)
309 PRK15064 ABC transporter ATP-b 100.0 1.1E-34 2.5E-39 332.0 24.2 188 106-311 2-242 (530)
310 PRK15439 autoinducer 2 ABC tra 100.0 6.3E-35 1.4E-39 332.5 21.9 191 105-309 268-490 (510)
311 PRK15177 Vi polysaccharide exp 100.0 8.4E-35 1.8E-39 295.1 20.0 177 125-314 2-195 (213)
312 COG3845 ABC-type uncharacteriz 100.0 1.2E-34 2.6E-39 313.3 22.1 192 105-305 4-223 (501)
313 PRK10522 multidrug transporter 100.0 1.6E-34 3.4E-39 332.0 24.0 189 105-303 322-530 (547)
314 PLN03130 ABC transporter C fam 100.0 7.4E-35 1.6E-39 366.6 23.1 197 105-311 1237-1461(1622)
315 PLN03232 ABC transporter C fam 100.0 1.2E-34 2.5E-39 364.3 24.6 197 105-311 1234-1458(1495)
316 KOG0056 Heavy metal exporter H 100.0 1.2E-35 2.5E-40 316.7 12.8 199 102-311 534-761 (790)
317 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-34 4.5E-39 298.4 21.0 161 130-301 19-195 (246)
318 PRK13541 cytochrome c biogenes 100.0 2.5E-34 5.4E-39 287.4 20.8 176 106-292 2-192 (195)
319 PRK10982 galactose/methyl gala 100.0 2E-34 4.4E-39 327.1 22.2 193 104-307 249-476 (491)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-34 6.5E-39 330.0 23.7 190 105-311 4-248 (552)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.5E-34 7.6E-39 272.9 20.1 144 106-299 1-144 (144)
322 TIGR02868 CydC thiol reductant 100.0 7.6E-35 1.6E-39 333.5 18.5 168 105-281 334-529 (529)
323 COG0396 sufC Cysteine desulfur 100.0 6.4E-34 1.4E-38 281.4 22.0 208 105-320 3-242 (251)
324 PRK15064 ABC transporter ATP-b 100.0 3.8E-34 8.2E-39 327.7 23.7 190 104-311 318-525 (530)
325 TIGR02857 CydD thiol reductant 100.0 1.7E-34 3.6E-39 330.7 20.1 181 105-295 320-529 (529)
326 COG4619 ABC-type uncharacteriz 100.0 5E-35 1.1E-39 275.4 12.5 175 121-300 14-212 (223)
327 TIGR00957 MRP_assoc_pro multi 100.0 4E-34 8.6E-39 360.0 24.7 197 105-311 1284-1508(1522)
328 COG4172 ABC-type uncharacteriz 100.0 5.1E-34 1.1E-38 299.8 20.3 206 104-311 5-247 (534)
329 cd03222 ABC_RNaseL_inhibitor T 100.0 6.5E-34 1.4E-38 279.8 19.5 153 109-307 4-159 (177)
330 PTZ00243 ABC transporter; Prov 100.0 4.5E-34 9.8E-39 358.9 23.4 197 105-311 1308-1533(1560)
331 PTZ00265 multidrug resistance 100.0 3.7E-34 8E-39 357.2 20.8 186 105-298 382-655 (1466)
332 PRK10938 putative molybdenum t 100.0 8.5E-34 1.8E-38 321.9 21.6 194 104-305 259-486 (490)
333 PRK13409 putative ATPase RIL; 100.0 2.2E-33 4.8E-38 323.2 23.1 184 104-306 339-537 (590)
334 cd03238 ABC_UvrA The excision 100.0 2.5E-33 5.5E-38 275.3 20.0 157 122-300 7-166 (176)
335 PRK11819 putative ABC transpor 100.0 4.1E-33 8.8E-38 320.7 24.5 187 104-308 323-530 (556)
336 COG4586 ABC-type uncharacteriz 100.0 5.2E-34 1.1E-38 287.4 14.2 189 122-314 36-249 (325)
337 TIGR01271 CFTR_protein cystic 100.0 3.9E-33 8.4E-38 350.1 25.5 196 105-311 1217-1440(1490)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.4E-33 1.2E-37 319.6 24.3 186 104-307 321-527 (552)
339 COG4674 Uncharacterized ABC-ty 100.0 2.5E-33 5.3E-38 270.0 15.0 197 104-310 4-234 (249)
340 PRK10636 putative ABC transpor 100.0 1.1E-32 2.4E-37 321.2 23.5 190 104-311 311-517 (638)
341 COG1119 ModF ABC-type molybden 100.0 2.4E-33 5.1E-38 280.5 15.3 194 103-305 29-256 (257)
342 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.4E-33 9.6E-38 289.7 17.8 184 110-304 5-220 (255)
343 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.7E-32 1E-36 261.6 20.6 151 108-299 2-157 (157)
344 COG4167 SapF ABC-type antimicr 100.0 8.2E-33 1.8E-37 263.5 14.7 203 105-311 4-239 (267)
345 COG5265 ATM1 ABC-type transpor 100.0 5.2E-33 1.1E-37 294.1 13.7 198 103-311 260-486 (497)
346 PRK11147 ABC transporter ATPas 100.0 4.7E-32 1E-36 316.3 22.8 187 104-308 318-525 (635)
347 PLN03232 ABC transporter C fam 100.0 3.1E-32 6.6E-37 342.5 22.2 191 105-311 614-828 (1495)
348 PLN03073 ABC transporter F fam 100.0 1.1E-31 2.5E-36 314.5 24.1 189 104-311 507-714 (718)
349 COG1101 PhnK ABC-type uncharac 100.0 3E-32 6.6E-37 266.3 15.7 195 107-305 3-232 (263)
350 PLN03130 ABC transporter C fam 100.0 7.7E-32 1.7E-36 339.4 22.8 190 105-311 614-828 (1622)
351 TIGR00954 3a01203 Peroxysomal 100.0 9.8E-32 2.1E-36 314.3 22.0 173 105-296 451-652 (659)
352 PRK10636 putative ABC transpor 100.0 2E-31 4.3E-36 310.7 23.8 184 106-308 2-233 (638)
353 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-31 3.7E-36 336.2 22.9 190 105-311 636-850 (1522)
354 PRK11147 ABC transporter ATPas 100.0 4.3E-31 9.2E-36 308.3 24.2 185 105-309 3-241 (635)
355 COG1134 TagH ABC-type polysacc 100.0 6.4E-31 1.4E-35 263.5 20.4 200 105-315 3-240 (249)
356 COG4107 PhnK ABC-type phosphon 100.0 7.9E-31 1.7E-35 248.1 15.1 198 105-311 6-241 (258)
357 TIGR01271 CFTR_protein cystic 100.0 1.3E-30 2.7E-35 327.6 21.6 184 106-311 429-636 (1490)
358 PRK13409 putative ATPase RIL; 100.0 1.3E-30 2.7E-35 300.4 17.7 177 111-298 79-287 (590)
359 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-30 2.9E-35 312.8 17.9 204 104-315 563-791 (885)
360 COG4136 ABC-type uncharacteriz 100.0 1.1E-30 2.3E-35 242.0 13.1 172 105-281 2-195 (213)
361 COG4133 CcmA ABC-type transpor 100.0 2.3E-30 4.9E-35 248.9 14.0 170 106-283 3-192 (209)
362 PTZ00243 ABC transporter; Prov 100.0 1.1E-29 2.4E-34 319.5 21.6 176 122-311 672-870 (1560)
363 COG0488 Uup ATPase components 100.0 4.8E-29 1.1E-33 281.2 20.7 183 105-306 3-235 (530)
364 cd03270 ABC_UvrA_I The excisio 100.0 3.3E-29 7.1E-34 256.4 17.2 180 122-304 7-226 (226)
365 PLN03073 ABC transporter F fam 100.0 2.9E-29 6.3E-34 294.2 16.6 196 104-308 176-428 (718)
366 KOG0054 Multidrug resistance-a 100.0 2.3E-28 4.9E-33 294.9 21.8 199 103-311 1136-1362(1381)
367 KOG0054 Multidrug resistance-a 100.0 2.2E-28 4.8E-33 295.0 21.0 192 103-310 516-730 (1381)
368 COG4778 PhnL ABC-type phosphon 100.0 1.4E-28 3.1E-33 232.1 11.2 189 105-297 4-227 (235)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 8.8E-28 1.9E-32 240.7 14.9 160 127-296 14-189 (197)
370 cd03271 ABC_UvrA_II The excisi 100.0 3E-27 6.6E-32 245.7 19.2 182 123-306 8-261 (261)
371 PF00005 ABC_tran: ABC transpo 99.9 6E-28 1.3E-32 226.8 10.6 122 126-250 1-137 (137)
372 COG0488 Uup ATPase components 99.9 9.7E-27 2.1E-31 262.6 19.6 191 102-310 318-524 (530)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-26 4.9E-31 237.5 17.1 167 122-296 14-234 (243)
374 COG1129 MglA ABC-type sugar tr 99.9 9.5E-26 2.1E-30 249.0 19.6 192 103-307 261-486 (500)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 3E-25 6.5E-30 225.1 15.4 183 105-299 5-210 (213)
376 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-25 2.5E-30 226.7 11.4 163 130-298 17-199 (204)
377 COG4138 BtuD ABC-type cobalami 99.9 1.5E-26 3.2E-31 219.5 4.5 192 106-311 4-221 (248)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.1E-26 1.3E-30 229.9 6.8 166 105-297 5-204 (212)
379 COG3845 ABC-type uncharacteriz 99.9 1.8E-23 4E-28 226.8 21.3 198 103-308 255-489 (501)
380 COG4178 ABC-type uncharacteriz 99.9 1.6E-23 3.4E-28 235.6 16.0 176 104-296 391-587 (604)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.1E-24 1.8E-28 219.9 12.5 156 136-296 25-242 (251)
382 PRK00635 excinuclease ABC subu 99.9 1.1E-22 2.5E-27 251.7 21.6 117 193-311 759-906 (1809)
383 PRK00349 uvrA excinuclease ABC 99.9 1.9E-22 4.1E-27 240.6 20.7 114 196-311 791-927 (943)
384 TIGR00630 uvra excinuclease AB 99.9 6.8E-22 1.5E-26 235.5 22.0 112 196-309 789-923 (924)
385 COG4615 PvdE ABC-type sideroph 99.9 5.5E-23 1.2E-27 216.2 9.4 191 105-304 322-530 (546)
386 KOG0927 Predicted transporter 99.9 1.8E-22 3.8E-27 219.9 12.0 195 105-308 75-306 (614)
387 COG1245 Predicted ATPase, RNas 99.9 9.7E-22 2.1E-26 210.1 15.4 174 104-296 341-530 (591)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.8E-21 3.9E-26 195.3 16.4 165 126-299 12-192 (198)
389 COG4170 SapD ABC-type antimicr 99.9 3.4E-22 7.3E-27 194.7 10.3 204 106-311 4-248 (330)
390 PF01061 ABC2_membrane: ABC-2 99.9 3.4E-23 7.3E-28 206.5 -0.0 208 407-619 1-210 (210)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.3E-21 9.4E-26 199.1 15.4 76 219-296 153-232 (247)
392 KOG0927 Predicted transporter 99.9 1.1E-21 2.4E-26 213.8 10.1 188 102-306 386-591 (614)
393 cd03280 ABC_MutS2 MutS2 homolo 99.8 5.4E-21 1.2E-25 192.1 12.3 147 125-304 16-172 (200)
394 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1E-20 2.2E-25 191.9 13.3 168 127-299 15-211 (213)
395 KOG2355 Predicted ABC-type tra 99.8 1.4E-19 3.1E-24 176.1 15.8 199 104-311 12-237 (291)
396 KOG0060 Long-chain acyl-CoA tr 99.8 2.9E-19 6.4E-24 196.2 17.6 180 103-297 431-641 (659)
397 cd03239 ABC_SMC_head The struc 99.8 3.1E-19 6.8E-24 176.1 15.9 143 135-297 21-172 (178)
398 KOG0062 ATPase component of AB 99.8 2E-20 4.3E-25 203.1 6.5 194 103-307 78-281 (582)
399 KOG0066 eIF2-interacting prote 99.8 3.6E-19 7.8E-24 188.8 11.7 165 102-282 583-762 (807)
400 COG1245 Predicted ATPase, RNas 99.8 1.3E-18 2.9E-23 186.3 11.7 159 134-297 98-288 (591)
401 KOG0062 ATPase component of AB 99.8 3.3E-18 7.2E-23 185.9 14.8 185 102-302 359-559 (582)
402 cd03227 ABC_Class2 ABC-type Cl 99.8 2.6E-18 5.6E-23 167.0 11.3 133 133-297 18-155 (162)
403 cd03241 ABC_RecN RecN ATPase i 99.8 7.7E-18 1.7E-22 177.6 14.2 77 220-299 169-249 (276)
404 COG2401 ABC-type ATPase fused 99.7 8.2E-18 1.8E-22 178.3 13.0 173 122-301 395-588 (593)
405 cd03283 ABC_MutS-like MutS-lik 99.7 5E-18 1.1E-22 170.5 10.1 144 124-295 15-163 (199)
406 cd03243 ABC_MutS_homologs The 99.7 4.2E-18 9.2E-23 171.3 9.2 155 129-310 22-178 (202)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.7 6.1E-18 1.3E-22 172.7 9.0 152 123-305 17-175 (222)
408 PRK00635 excinuclease ABC subu 99.7 1.3E-16 2.8E-21 198.5 20.4 94 216-311 1694-1796(1809)
409 COG0178 UvrA Excinuclease ATPa 99.7 3.6E-16 7.7E-21 177.8 20.2 93 217-311 818-919 (935)
410 KOG0064 Peroxisomal long-chain 99.7 3.2E-17 6.9E-22 178.0 10.6 161 105-282 481-670 (728)
411 TIGR00630 uvra excinuclease AB 99.6 6.7E-16 1.4E-20 184.6 13.7 94 215-310 481-582 (924)
412 PRK00349 uvrA excinuclease ABC 99.6 7.8E-16 1.7E-20 184.3 13.2 95 215-311 483-585 (943)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.6 3.4E-16 7.4E-21 157.7 8.6 136 122-281 15-151 (204)
414 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.4E-15 3E-20 154.7 11.6 156 124-310 19-180 (216)
415 cd03242 ABC_RecF RecF is a rec 99.6 4.7E-15 1E-19 156.0 14.4 76 220-300 182-269 (270)
416 KOG0066 eIF2-interacting prote 99.6 1.9E-16 4.2E-21 168.2 2.9 187 104-303 263-490 (807)
417 TIGR02858 spore_III_AA stage I 99.6 5.4E-15 1.2E-19 154.8 12.0 138 137-309 112-267 (270)
418 smart00534 MUTSac ATPase domai 99.5 1.4E-14 2.9E-19 144.0 7.6 137 138-303 1-142 (185)
419 KOG0063 RNAse L inhibitor, ABC 99.5 2E-13 4.4E-18 145.6 13.2 162 123-296 349-531 (592)
420 PRK00064 recF recombination pr 99.5 5.8E-13 1.3E-17 145.7 16.5 77 220-300 272-359 (361)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.4 6.3E-13 1.4E-17 135.0 12.0 119 137-282 30-155 (213)
422 TIGR01069 mutS2 MutS2 family p 99.4 3.8E-13 8.2E-18 159.4 9.1 129 129-282 314-446 (771)
423 PF02463 SMC_N: RecF/RecN/SMC 99.4 6.2E-12 1.3E-16 127.9 14.6 74 220-296 135-212 (220)
424 TIGR01247 drrB daunorubicin re 99.4 1.1E-10 2.3E-15 120.2 23.0 226 415-671 1-234 (236)
425 PRK08533 flagellar accessory p 99.3 1.9E-11 4.1E-16 125.7 13.3 141 132-296 20-184 (230)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.3E-11 4.9E-16 124.2 13.6 133 123-282 18-155 (222)
427 cd00820 PEPCK_HprK Phosphoenol 99.3 2.3E-12 4.9E-17 115.9 5.3 72 123-206 2-78 (107)
428 PTZ00132 GTP-binding nuclear p 99.3 5.7E-11 1.2E-15 120.4 13.8 44 226-269 157-205 (215)
429 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 2E-10 4.3E-15 115.9 17.0 151 497-678 58-208 (208)
430 TIGR00025 Mtu_efflux ABC trans 99.2 1.3E-09 2.8E-14 112.0 23.2 222 421-674 2-229 (232)
431 TIGR00634 recN DNA repair prot 99.2 1.6E-11 3.5E-16 142.0 9.7 77 220-299 439-519 (563)
432 PRK07721 fliI flagellum-specif 99.2 4.9E-11 1.1E-15 132.7 13.1 164 123-308 146-340 (438)
433 TIGR01291 nodJ ABC-2 type tran 99.2 2.5E-09 5.3E-14 111.6 24.7 237 409-676 7-250 (253)
434 KOG0063 RNAse L inhibitor, ABC 99.2 1E-11 2.2E-16 132.8 6.8 159 134-297 98-288 (592)
435 PRK14079 recF recombination pr 99.2 8.2E-11 1.8E-15 128.2 14.0 74 221-302 263-345 (349)
436 PRK00409 recombination and DNA 99.2 1.3E-11 2.7E-16 146.9 8.0 147 130-303 320-470 (782)
437 TIGR03861 phenyl_ABC_PedC alco 99.2 4.1E-09 8.9E-14 109.7 25.8 237 406-675 1-250 (253)
438 cd01124 KaiC KaiC is a circadi 99.2 8.3E-11 1.8E-15 116.1 12.4 82 215-296 65-163 (187)
439 TIGR00611 recf recF protein. A 99.2 1.2E-10 2.7E-15 127.5 14.0 60 220-282 274-342 (365)
440 PRK10869 recombination and rep 99.2 4.5E-11 9.8E-16 137.4 10.6 76 221-299 430-509 (553)
441 TIGR00618 sbcc exonuclease Sbc 99.2 6.4E-11 1.4E-15 146.3 11.6 83 215-298 944-1036(1042)
442 cd01128 rho_factor Transcripti 99.2 4.6E-11 1E-15 123.9 8.3 161 132-300 12-211 (249)
443 TIGR02788 VirB11 P-type DNA tr 99.2 9E-11 1.9E-15 125.9 10.0 142 129-310 137-280 (308)
444 cd01120 RecA-like_NTPases RecA 99.2 1.4E-10 3E-15 110.6 9.9 127 138-284 1-140 (165)
445 PRK13695 putative NTPase; Prov 99.2 1.4E-10 3.1E-15 113.8 10.1 150 138-303 2-156 (174)
446 PHA02562 46 endonuclease subun 99.2 4.9E-11 1.1E-15 138.0 7.9 77 220-300 467-555 (562)
447 cd03286 ABC_MSH6_euk MutS6 hom 99.1 6.9E-10 1.5E-14 113.1 12.7 134 123-282 17-154 (218)
448 PF13304 AAA_21: AAA domain; P 99.1 1.3E-10 2.8E-15 117.6 7.2 63 220-282 235-300 (303)
449 PRK06793 fliI flagellum-specif 99.1 3.2E-10 6.9E-15 125.5 10.7 167 106-306 131-306 (432)
450 PRK15066 inner membrane transp 99.0 1.7E-07 3.7E-12 97.9 27.0 240 405-678 6-254 (257)
451 PRK03918 chromosome segregatio 99.0 6.7E-10 1.5E-14 135.3 10.1 79 216-296 783-867 (880)
452 COG0178 UvrA Excinuclease ATPa 99.0 2.3E-09 5.1E-14 123.0 13.3 95 216-312 476-578 (935)
453 COG3910 Predicted ATPase [Gene 99.0 2.4E-09 5.3E-14 104.0 10.3 139 137-282 38-189 (233)
454 PRK10246 exonuclease subunit S 99.0 1.5E-09 3.3E-14 133.8 11.1 81 216-297 944-1032(1047)
455 PRK06067 flagellar accessory p 98.9 1.7E-08 3.7E-13 103.9 15.3 144 130-297 19-187 (234)
456 PRK01156 chromosome segregatio 98.9 4.9E-09 1.1E-13 128.0 11.1 78 217-296 797-883 (895)
457 cd01131 PilT Pilus retraction 98.9 6.4E-09 1.4E-13 104.5 10.1 119 138-296 3-122 (198)
458 TIGR02168 SMC_prok_B chromosom 98.8 6.7E-09 1.4E-13 129.8 8.0 78 216-296 1084-1165(1179)
459 TIGR00606 rad50 rad50. This fa 98.8 1E-08 2.2E-13 129.6 8.3 71 218-289 1196-1277(1311)
460 PRK13830 conjugal transfer pro 98.8 3.6E-08 7.7E-13 118.7 12.5 70 237-306 650-728 (818)
461 smart00382 AAA ATPases associa 98.8 2.4E-07 5.2E-12 84.8 15.2 118 135-279 1-124 (148)
462 TIGR03238 dnd_assoc_3 dnd syst 98.7 8.1E-09 1.8E-13 114.3 5.4 53 123-179 19-71 (504)
463 TIGR02169 SMC_prok_A chromosom 98.7 1.8E-08 3.9E-13 126.1 8.7 78 217-297 1070-1151(1164)
464 cd01130 VirB11-like_ATPase Typ 98.7 1.4E-07 3E-12 93.8 12.2 116 127-282 16-136 (186)
465 COG0842 ABC-type multidrug tra 98.7 1.9E-06 4.2E-11 89.4 20.7 168 484-679 117-285 (286)
466 PRK02224 chromosome segregatio 98.7 4.9E-08 1.1E-12 119.1 9.9 78 218-297 778-868 (880)
467 cd01125 repA Hexameric Replica 98.6 1.4E-07 3E-12 97.5 10.1 134 136-281 1-159 (239)
468 TIGR01420 pilT_fam pilus retra 98.6 4.3E-07 9.4E-12 99.0 12.8 123 133-295 119-242 (343)
469 TIGR02655 circ_KaiC circadian 98.6 7.3E-09 1.6E-13 117.9 -1.8 158 126-296 10-190 (484)
470 TIGR01026 fliI_yscN ATPase Fli 98.5 8.7E-07 1.9E-11 99.1 14.4 150 123-309 151-346 (440)
471 PRK07196 fliI flagellum-specif 98.4 3.2E-07 6.9E-12 101.9 6.2 170 122-303 142-333 (434)
472 PRK06995 flhF flagellar biosyn 98.3 2.4E-06 5.2E-11 96.3 10.8 65 125-207 245-309 (484)
473 COG0419 SbcC ATPase involved i 98.3 1.6E-06 3.5E-11 106.1 10.1 79 217-297 811-897 (908)
474 TIGR01248 drrC daunorubicin re 98.3 5.4E-06 1.2E-10 79.9 11.6 129 482-615 16-146 (152)
475 cd02023 UMPK Uridine monophosp 98.3 6.1E-07 1.3E-11 89.9 5.0 106 138-254 1-113 (198)
476 PRK05399 DNA mismatch repair p 98.3 3.5E-06 7.7E-11 101.9 11.8 136 124-291 596-738 (854)
477 TIGR03881 KaiC_arch_4 KaiC dom 98.3 2.1E-06 4.6E-11 87.9 8.0 155 130-296 14-188 (229)
478 PRK06002 fliI flagellum-specif 98.3 2.2E-06 4.7E-11 95.5 8.3 177 103-303 137-343 (450)
479 PRK13764 ATPase; Provisional 98.2 8.1E-06 1.8E-10 94.2 12.5 129 134-307 255-401 (602)
480 PRK13891 conjugal transfer pro 98.2 1.2E-05 2.5E-10 97.7 14.3 69 232-301 680-751 (852)
481 TIGR02680 conserved hypothetic 98.2 2.3E-06 4.9E-11 108.2 7.4 60 218-280 1244-1315(1353)
482 PLN03210 Resistant to P. syrin 98.1 7.3E-06 1.6E-10 102.9 10.2 160 129-318 200-365 (1153)
483 cd00009 AAA The AAA+ (ATPases 98.1 7.5E-06 1.6E-10 75.7 7.5 108 135-281 18-130 (151)
484 TIGR00416 sms DNA repair prote 98.1 7.5E-06 1.6E-10 92.4 8.2 141 126-299 83-247 (454)
485 TIGR00152 dephospho-CoA kinase 98.1 3.1E-06 6.8E-11 84.1 4.6 129 138-297 1-132 (188)
486 PRK09825 idnK D-gluconate kina 98.1 3E-06 6.5E-11 83.7 4.1 65 135-206 2-70 (176)
487 cd01122 GP4d_helicase GP4d_hel 98.1 2.3E-05 5E-10 82.3 10.8 153 124-280 18-190 (271)
488 PRK04296 thymidine kinase; Pro 98.0 2.5E-05 5.4E-10 78.1 10.4 55 238-296 77-140 (190)
489 TIGR02524 dot_icm_DotB Dot/Icm 98.0 1.7E-05 3.8E-10 86.8 9.9 123 134-294 132-258 (358)
490 TIGR03518 ABC_perm_GldF glidin 98.0 0.00074 1.6E-08 70.1 21.1 220 410-675 2-239 (240)
491 PF13558 SbcCD_C: Putative exo 98.0 1.2E-05 2.6E-10 70.5 6.2 51 216-266 27-90 (90)
492 COG4637 Predicted ATPase [Gene 98.0 1E-05 2.2E-10 84.8 6.6 62 220-282 269-332 (373)
493 PRK13898 type IV secretion sys 98.0 0.0001 2.2E-09 89.2 16.2 48 235-282 638-686 (800)
494 PF13555 AAA_29: P-loop contai 98.0 8.4E-06 1.8E-10 66.1 4.4 35 128-162 14-49 (62)
495 PRK00454 engB GTP-binding prot 98.0 5.1E-05 1.1E-09 75.1 11.0 50 217-270 143-195 (196)
496 PRK09862 putative ATP-dependen 98.0 1.5E-05 3.2E-10 90.6 7.6 62 108-177 187-248 (506)
497 TIGR03880 KaiC_arch_3 KaiC dom 97.9 0.0001 2.2E-09 75.4 12.9 57 239-296 107-177 (224)
498 cd01121 Sms Sms (bacterial rad 97.9 0.00016 3.5E-09 79.6 14.3 136 131-298 77-234 (372)
499 PRK09183 transposase/IS protei 97.9 6.1E-05 1.3E-09 79.0 10.4 140 106-289 72-214 (259)
500 TIGR02903 spore_lon_C ATP-depe 97.9 2.9E-05 6.4E-10 90.9 8.5 108 135-266 174-291 (615)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-101 Score=889.25 Aligned_cols=553 Identities=32% Similarity=0.532 Sum_probs=479.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~ 180 (697)
+..+.|+|++++.+.+....+++|+||||+++|||++||||||||||||||++|+|+.+.+...+|+|.+||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4579999999998755334688999999999999999999999999999999999999876568899999996543 34
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccccc---------------------------CCCCCHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR---------------------------KNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~---------------------------~~~LSGGqrqRv~IA 233 (697)
++.+|||.|+|.+++++||+|+|.|++.+++|...++. .+++||||||||+||
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 56799999999999999999999999999998642211 168999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
.+|++||.||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff 262 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF 262 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCchHHHHHHhccc--hhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHh-cCHHHHHHHHHHHHhh
Q 005423 314 SNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQ-SSADAAAVETMILRLT 390 (697)
Q Consensus 314 ~~~g~~~p~~~~pad~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~~~~~~~~~~~~~~ 390 (697)
+++|+|||+..||+||++++++.+ .+.. ....+.....+.++ .....+..........
T Consensus 263 ~~~G~~~P~~~Npadf~l~l~s~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (613)
T KOG0061|consen 263 SSLGFPCPELENPADFLLDLLSVDSGTREL-------------------EEAVRIAKLINKFSQTDNLKKTLEALEKSLS 323 (613)
T ss_pred HhCCCCCCCcCChHHHHHHHHccCCCchhH-------------------HhHHHHHHHhhhccccchhhhhHHHHhhhcc
Confidence 999999999999999999998853 1110 00011111222222 1111111100000000
Q ss_pred hccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 005423 391 EKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNS 470 (697)
Q Consensus 391 ~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~ 470 (697)
+ ....+....++||.|+++|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||++.++.
T Consensus 324 ~--~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 401 (613)
T KOG0061|consen 324 T--SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMT 401 (613)
T ss_pred c--ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHH
Confidence 0 11111122789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH-HHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHH
Q 005423 471 LLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLL 549 (697)
Q Consensus 471 ~~~~~-~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~ 549 (697)
|.++. .++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..+
T Consensus 402 f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~ 481 (613)
T KOG0061|consen 402 FLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSL 481 (613)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 88876 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCC-
Q 005423 550 VNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ- 628 (697)
Q Consensus 550 ~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~- 628 (697)
+++++++++++++||...|++++++++++|++|+|||++.++||+ |++|++|+|+++|++||+++|||.+....|..
T Consensus 482 ~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~ 559 (613)
T KOG0061|consen 482 VAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccC
Confidence 999999999999999999999999999999999999999999996 45679999999999999999999973333422
Q ss_pred ---CccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 005423 629 ---VRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNT 681 (697)
Q Consensus 629 ---~~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~~~ 681 (697)
.+..+|+++++. .++ ...++|.|+.++++++++|++++|++|+++.|++.
T Consensus 560 ~~~~~~~~~~~~l~~-~~~--~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGEDVLKQ-LGF--EDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHHHHHh-cCC--cccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 226799999998 888 35789999999999999999999999999998764
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.7e-99 Score=872.79 Aligned_cols=537 Identities=24% Similarity=0.404 Sum_probs=469.9
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCC
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (697)
..+.+|+|+|+++++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999988754457999999987542 2457899999999999999
Q ss_pred HHHHHHHHHHcCCCcc----------------------cccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 199 VREYLYYSALLQLPGF----------------------FCQR------KNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~----------------------~~~~------~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
|+|||.|++.++++.. .+.. .++|||||||||+|||||+.+|+||+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999887665431 1111 14799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHH
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 330 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~ 330 (697)
|||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc-----C--CCcCCCCCC
Q 005423 331 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE-----G--PFLKSKGKA 403 (697)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 403 (697)
+++++.+.+. ..+..+..+++.+.|+.++.+++..+........+ . .....++..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 9887644211 01112344566777777766555444333211110 0 011234678
Q ss_pred CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005423 404 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 482 (697)
Q Consensus 404 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~-~~v~~~~~ 482 (697)
+|++|+.+|++|+++++||||.++++|+++++++|+++|++||++++++.++++|.|++|+++++++|.++ ..++.++.
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988875 55789999
Q ss_pred hHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005423 483 EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 562 (697)
Q Consensus 483 er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~ 562 (697)
||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcc-CCCCC-----ccccHHH
Q 005423 563 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PVGQV-----RTISGYQ 636 (697)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~-~~~~~-----~~~~G~~ 636 (697)
|+..+|+.+++++++++++|+||++++++||+ |+.|++|+||++|++||++.|||.|..+ +|... +..+|++
T Consensus 498 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~--~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~ 575 (617)
T TIGR00955 498 SSTSMALTVGPPFVIPFLLFGGFFINSDSIPV--YFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575 (617)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccChhhccH--HHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHH
Confidence 99999999999999999999999999999995 5567999999999999999999999876 55432 2467999
Q ss_pred HHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 005423 637 ALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKN 680 (697)
Q Consensus 637 ~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~~ 680 (697)
+|+. ||++ ..+.|.|+++|++++++|++++|++||++.+++
T Consensus 576 ~l~~-~g~~--~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 576 ILET-LSFR--NADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HHHh-cCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9997 9993 467899999999999999999999999987664
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.3e-97 Score=857.55 Aligned_cols=549 Identities=24% Similarity=0.380 Sum_probs=449.1
Q ss_pred CceEEEEeEEEEEeccc------------------------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+..++|.|++++.+..+ ...+.+|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45788888888875221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------c
Q 005423 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------F 215 (697)
Q Consensus 159 ~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~ 215 (697)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+.+.++++.. .
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 23569999999999999999999998765544311 0
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 216 -----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 216 -----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
++..++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++|||+.+++++||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 112468999999999999999999999999999999999999999999999998899999999999878899999
Q ss_pred EEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHH
Q 005423 291 RICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLE 370 (697)
Q Consensus 291 ~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (697)
++++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+.+. ..... .+.....+.+.
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~~---------~~~~~~~~~l~ 341 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVSE---------REKPNVKQSLV 341 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCccc---------cccchHHHHHH
Confidence 99999999999999999999999999999999999999999988654211 00000 00001112344
Q ss_pred HHHhcCHHHHHHHHHHHH--hhh----------ccCC-CcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Q 005423 371 ATYQSSADAAAVETMILR--LTE----------KEGP-FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 437 (697)
Q Consensus 371 ~~~~~s~~~~~~~~~~~~--~~~----------~~~~-~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~ 437 (697)
+.|++... ++..+..+. ... .+.. ..+..+.++||+|+.+|++|++++ |||+.+.++|+++++++
T Consensus 342 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~ 419 (659)
T PLN03211 342 ASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAA 419 (659)
T ss_pred HHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHH
Confidence 44532111 111111000 000 0000 011234578999999999999988 89999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHH
Q 005423 438 TLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLI 516 (697)
Q Consensus 438 al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~-~~~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~ 516 (697)
|+++|++||+++ +.++++|.|++||++++..+.+ +..++.|+.||++|+||+++|+|++++|++|++++|+|+.++.
T Consensus 420 ~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~ 497 (659)
T PLN03211 420 ALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497 (659)
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 6789999999999988877654 4678999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccc
Q 005423 517 SISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPV 596 (697)
Q Consensus 517 ~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~ 596 (697)
+++|++|+|||+||++++.+|++|+++++++.++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 498 ~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-- 573 (659)
T PLN03211 498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-- 573 (659)
T ss_pred HHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 7885
Q ss_pred ccccccccCHhHHHHHHHHHHHhCCCc-----cCCCCCc--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHH
Q 005423 597 WTYPISYVAFHTYSIKGLLENEYLGTS-----FPVGQVR--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLL 669 (697)
Q Consensus 597 W~~w~~yiSp~~Ya~e~l~~nef~g~~-----~~~~~~~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~ 669 (697)
|+.|++|+||++|++||+++|||.+.. ++|..+. ...+..++.. ..++ ..+.|.|+++|++++++|++++
T Consensus 574 ~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~l~ 650 (659)
T PLN03211 574 CMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE-DVAG--QISPATSVSVLIFMFVGYRLLA 650 (659)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh-hhhc--ccchHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999998643 3454221 1111223332 3342 3468999999999999999999
Q ss_pred HHHHHhhc
Q 005423 670 FVLLYLRV 677 (697)
Q Consensus 670 ~i~L~~~~ 677 (697)
|++|++.+
T Consensus 651 ~~~L~~~~ 658 (659)
T PLN03211 651 YLALRRIK 658 (659)
T ss_pred HHHHHhcc
Confidence 99998643
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.5e-96 Score=909.05 Aligned_cols=548 Identities=21% Similarity=0.314 Sum_probs=476.9
Q ss_pred CceEEEEeEEEEEeccc--------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005423 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (697)
+..++|+||+|.++.+. ...+++|+|||+.++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996321 13457999999999999999999999999999999999997643 3679999999
Q ss_pred EeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------ccccC-----CCCCHH
Q 005423 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------FCQRK-----NGLPCG 225 (697)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~~~~~-----~~LSGG 225 (697)
.+... .++.+|||+|++.+++.+||+|||.|++.++++.. .++.. ++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 23568999999999999999999999876654321 11221 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv~~G 304 (697)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998788999999999996 8999999
Q ss_pred Cc----hhhHHhhhhc-CCC-CCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHH
Q 005423 305 ET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSAD 378 (697)
Q Consensus 305 ~~----~~~~~~f~~~-g~~-~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 378 (697)
++ +++.+||+++ |.+ ||+..|||||++++++.+.+. ....++.+.|+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----------------------~~~~d~~~~~~~s~~ 1160 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----------------------KLGIDFAEHYKSSSL 1160 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----------------------cccchHHHHHhccHH
Confidence 96 5889999997 675 999999999999887543110 001247788998888
Q ss_pred HHHHHHHHHHhhhcc----CCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH--
Q 005423 379 AAAVETMILRLTEKE----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL-- 452 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~-- 452 (697)
++...+.+++..... .....+++++++++|+++|++|+++++||||.++++|+++++++|+++|++||++++++
T Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~ 1240 (1470)
T PLN03140 1161 YQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSN 1240 (1470)
T ss_pred HHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcch
Confidence 777665554332211 11123568899999999999999999999999999999999999999999999999765
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccc
Q 005423 453 -SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGL 530 (697)
Q Consensus 453 -~~i~~r~g~lff~~~~~~~~~~~-~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl 530 (697)
.++++|.|++|+++++.++.++. .+|.+..||++|+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||
T Consensus 1241 ~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl 1320 (1470)
T PLN03140 1241 ANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 57888999999999998887654 4699999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHH
Q 005423 531 RDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 610 (697)
Q Consensus 531 ~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya 610 (697)
++++.+||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||+ +| .|++|+||++|+
T Consensus 1321 ~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~-~W~~~isp~~y~ 1398 (1470)
T PLN03140 1321 EWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WW-VWYYWICPVAWT 1398 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HH-HHHHHcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996 35 579999999999
Q ss_pred HHHHHHHHhCCCccCCCCCc---cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005423 611 IKGLLENEYLGTSFPVGQVR---TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 611 ~e~l~~nef~g~~~~~~~~~---~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
++||+.|||.|.+++|..++ ..++++++...||+ ..++.|++++++++|+++|++++++++++...
T Consensus 1399 ~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1399 VYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGY--DPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCc--CcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887665443 35788998777999 35689999999999999999999999987653
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.7e-96 Score=907.88 Aligned_cols=539 Identities=22% Similarity=0.343 Sum_probs=468.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCccEEEEcCccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (697)
.+++|+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999997421 1246999999987531 23469999999999999
Q ss_pred CCHHHHHHHHHHcCCCc---------------------------ccc-----ccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 197 LTVREYLYYSALLQLPG---------------------------FFC-----QRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~---------------------------~~~-----~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||+|+|.|++.++.+. ..+ +..++|||||||||+||++|+.+|+||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999987654321 000 1236899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCC
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIM 323 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~ 323 (697)
|||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999996 499999999999889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc-----------
Q 005423 324 QSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK----------- 392 (697)
Q Consensus 324 ~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----------- 392 (697)
.||+||++++.+.+.+. ....... ......+++++.|++|+.++++.+.+++....
T Consensus 313 ~n~aDfl~~~~~~~~~~---~~~~~e~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQ---IKPGYEK----------KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred CChHHHHHhccChhhhh---ccccccc----------cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 99999988876543211 1111000 00112356788898888776655544321100
Q ss_pred --------cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005423 393 --------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFV 464 (697)
Q Consensus 393 --------~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff 464 (697)
......+.+..|+++|+++|++|+++++||||.++++|+++++++|+++|++||+++++++++++|.|++||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~ 459 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFF 459 (1394)
T ss_pred HHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Confidence 001112457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHH
Q 005423 465 FVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNF 544 (697)
Q Consensus 465 ~~~~~~~~~~~~v~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~ 544 (697)
++++.+|+++..++.++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++
T Consensus 460 ~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~ 539 (1394)
T TIGR00956 460 AILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLIL 539 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcc
Q 005423 545 FMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF 624 (697)
Q Consensus 545 ~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~ 624 (697)
+++.++++++++++++++||+.+|+.+++++++++++|+||++++++||+ |+.|++|+||++|++||++.|||+|..+
T Consensus 540 ~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 540 FICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999995 6677999999999999999999999888
Q ss_pred CCCC------------------------C--ccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 625 PVGQ------------------------V--RTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 625 ~~~~------------------------~--~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
+|.. + +.++|+++|+..|++ ...++|+|+++|++|+++|+++.++++.+..
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8741 0 146999999976888 3578999999999999999999999998876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.4e-95 Score=897.15 Aligned_cols=562 Identities=22% Similarity=0.333 Sum_probs=480.3
Q ss_pred CCceEEEEeEEEEEe-c----------------------------ccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHH
Q 005423 102 AGASVVWKDLTVTIK-G----------------------------KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~-~----------------------------~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTL 152 (697)
+...++|+||++.-. . +++..+.+|+||||.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 345689999988764 0 01234569999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCC------------------
Q 005423 153 LRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLP------------------ 212 (697)
Q Consensus 153 l~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~------------------ 212 (697)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|++.++.+
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998764467999999987532 246799999999999999999999998654310
Q ss_pred -----------------------------------ccc-----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005423 213 -----------------------------------GFF-----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 252 (697)
Q Consensus 213 -----------------------------------~~~-----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 252 (697)
+.. ++..++|||||||||+||++|+.+|++|||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 000 1233799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCchHHHH
Q 005423 253 DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 331 (697)
Q Consensus 253 D~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~pad~~l 331 (697)
|+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999986 58999999999988999999999999999999999999999999999999999999999888
Q ss_pred HHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhh----ccCCCcCCCCCCCHHH
Q 005423 332 RAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTE----KEGPFLKSKGKASSAT 407 (697)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~ 407 (697)
++.+...... .+... +.+.. ....+++.+.|+++..++++.+.+..... .......+++..+++.
T Consensus 448 ~v~s~~~~~~-----~~~~~--~~p~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~ 516 (1470)
T PLN03140 448 EVTSKKDQEQ-----YWADR--NKPYR----YISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKME 516 (1470)
T ss_pred HhcCchhhhh-----hhhcc--CCccc----cCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHH
Confidence 8766432211 11110 00000 01235688899998877666555432111 1111122458899999
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005423 408 RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL---SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEI 484 (697)
Q Consensus 408 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~---~~i~~r~g~lff~~~~~~~~~~~~v~~~~~er 484 (697)
|++.|++|+++.++||+.+++.|+++.+++|+++|++||+++.++ .+.+.+.|++||++++.+|.++..++.++.||
T Consensus 517 q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r 596 (1470)
T PLN03140 517 LLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRL 596 (1470)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997542 35677889999999999999999999999999
Q ss_pred HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005423 485 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 564 (697)
Q Consensus 485 ~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~ 564 (697)
+||+|||++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+
T Consensus 597 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~ 676 (1470)
T PLN03140 597 PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT 676 (1470)
T ss_pred chhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCC---CCCccccHHHHHhhh
Q 005423 565 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV---GQVRTISGYQALQSA 641 (697)
Q Consensus 565 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~---~~~~~~~G~~~L~~~ 641 (697)
+.+|+.+++++++++++|+||++++++||+ |+.|++|+||++||+||+++|||.+..+.+ .....++|+++|+.
T Consensus 677 ~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~- 753 (1470)
T PLN03140 677 MIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI- 753 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-
Confidence 999999999999999999999999999995 556799999999999999999998876542 22236899999987
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 642 YDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 642 ~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
+|+.....++|+|+++|++|+++|+++++++|++..
T Consensus 754 ~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 754 FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999554557899999999999999999999999866
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-93 Score=887.68 Aligned_cols=546 Identities=25% Similarity=0.376 Sum_probs=471.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYG 182 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~ 182 (697)
..++|+||+++++.+ +..+.+|+|||+++++||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 358999999998532 234679999999999999999999999999999999999987533345999999998642 346
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHcCCCcc----------------------ccccCC----CCCHHHHHHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGF----------------------FCQRKN----GLPCGERRRVRIAREL 236 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~----------------------~~~~~~----~LSGGqrqRv~IA~aL 236 (697)
.++||+|++.+++.+||+|||.+++.++++.. .++..+ +|||||||||+||+||
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 79999999999999999999999876654321 111222 7999999999999999
Q ss_pred hhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC-eEEEEeCc----hhhH
Q 005423 237 VMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LACL 310 (697)
Q Consensus 237 ~~~P~-iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~~~ 310 (697)
+.+|+ ||||||||+|||+.++..|++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ ++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 999999999999999999999999999889999999999987788899999999987 99999997 5689
Q ss_pred HhhhhcCC-CCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 005423 311 QHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRL 389 (697)
Q Consensus 311 ~~f~~~g~-~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 389 (697)
+||+++|+ +||++.|||||++++++.+... + ..+++.+.|+.|...++..+.+++.
T Consensus 997 ~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------~---~~~~~~~~~~~s~~~~~~~~~~~~~ 1053 (1394)
T TIGR00956 997 NYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------H---ANQDYHEVWRNSSEYQAVKNELDRL 1053 (1394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------c---hhccHHHHHhcCHHHHHHHHHHHHh
Confidence 99999996 9999999999999988643211 0 0123567788777766655544432
Q ss_pred hhcc----C---CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005423 390 TEKE----G---PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAI 462 (697)
Q Consensus 390 ~~~~----~---~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~l 462 (697)
.... . ....+++++||++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.+++||+|++
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~ 1133 (1394)
T TIGR00956 1054 EAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAV 1133 (1394)
T ss_pred hcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 2110 0 01114578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh-HhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHH-----
Q 005423 463 FVFVSFNSLLNIAGVPALMKEIKTY-ASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSL----- 536 (697)
Q Consensus 463 ff~~~~~~~~~~~~v~~~~~er~vf-~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~----- 536 (697)
|+++.+..++....+|.|+.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1134 f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~ 1213 (1394)
T TIGR00956 1134 FMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVH 1213 (1394)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccccccc
Confidence 9998888777667789998988885 8999999999999999999999999999999999999999999988866
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHH
Q 005423 537 --LMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGL 614 (697)
Q Consensus 537 --f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l 614 (697)
|++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++++||. +|+ |++|+||++|+++|+
T Consensus 1214 ~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l 1291 (1394)
T TIGR00956 1214 ERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQAL 1291 (1394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 465 699999999999999
Q ss_pred HHHHhCCCccCCCCC------------------------------------c----cccHHHHHhhhcCccccCCCchhH
Q 005423 615 LENEYLGTSFPVGQV------------------------------------R----TISGYQALQSAYDISSKSNSKWGN 654 (697)
Q Consensus 615 ~~nef~g~~~~~~~~------------------------------------~----~~~G~~~L~~~~~~~~~~~~~w~~ 654 (697)
+.|||.|.++.|... + +.+|+++|+. +++ ...++|+|
T Consensus 1292 ~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~--~~~~~w~~ 1368 (1394)
T TIGR00956 1292 LSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISS--KYSGRWRN 1368 (1394)
T ss_pred HHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCC--cccccccc
Confidence 999999987655321 1 3599999997 888 35689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 655 LLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 655 ~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
++++++|++++ +++++.|+++.|+
T Consensus 1369 ~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1369 FGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred hhhhhHHHHHH-HHHHHhhheEEEc
Confidence 99999999999 8888888877553
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-94 Score=844.60 Aligned_cols=547 Identities=24% Similarity=0.365 Sum_probs=476.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCC
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPY 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~ 181 (697)
....|+|+.++++.++ +++++|+||+|.++||.++||||+|||||||||++|+||...+ .++|+|.+||.+.. ...
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 3578999999886543 6789999999999999999999999999999999999997654 68999999999864 335
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccc--------------------------cCCCCCHHHHHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--------------------------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~--------------------------~~~~LSGGqrqRv~IA~a 235 (697)
+.+|||.|+|.|.+.+||+|.|+|++.+|+|...+. ...|||.+||||++||.+
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 789999999999999999999999999998765322 127899999999999999
Q ss_pred HhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-CCeEEEEeCchh----h
Q 005423 236 LVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA----C 309 (697)
Q Consensus 236 L~~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~----~ 309 (697)
|+.+| .||+|||||||||+.++..|++.||++++.|+||+||||||+.++++.||++++|+ +|++||+|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 89999999999999999999999999999999999999999999999999999996 789999999754 5
Q ss_pred HHhhhhc-CCCCCCCCCchHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005423 310 LQHFSNA-GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 388 (697)
Q Consensus 310 ~~~f~~~-g~~~p~~~~pad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~ 388 (697)
++||+++ |.+||...|||||+|++++...+. . .-.++.+.|++|++++++.+.+++
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~------~-----------------~~~D~a~~w~~S~e~k~~~e~v~~ 1080 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA------S-----------------LSVDFAEIWKNSEEYKRNKELVKE 1080 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc------c-----------------cCccHHHHHhccHHHHHHHHHHHH
Confidence 6799999 599999999999999998754221 0 012578899999999999888876
Q ss_pred hhhccC-----CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005423 389 LTEKEG-----PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 463 (697)
Q Consensus 389 ~~~~~~-----~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lf 463 (697)
+.+... ...++++++|+|.|++.++||+++.+||+|.|+++|++++++.||++|+.||+.|++.+++||.+|++|
T Consensus 1081 l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~y 1160 (1391)
T KOG0065|consen 1081 LSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAY 1160 (1391)
T ss_pred HhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHH
Confidence 544321 123456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHH
Q 005423 464 VFVSFNSLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVL 542 (697)
Q Consensus 464 f~~~~~~~~~~~~v-~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l 542 (697)
+.+++......+.+ +....||.+++||+++|+||+.+|++|++++|+|+.++++.+|.+|+|+|+|+.+++.+|++|++
T Consensus 1161 ma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~ 1240 (1391)
T KOG0065|consen 1161 MATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLL 1240 (1391)
T ss_pred HHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHH
Confidence 99988877666544 56677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCC
Q 005423 543 NFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGT 622 (697)
Q Consensus 543 ~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~ 622 (697)
.++++.++.+.+|+++.+++||.++|.++.+.+..++.+|+|+++|+..||+ +|+ |+||+||++|.+++|+..++++.
T Consensus 1241 ~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~ 1318 (1391)
T KOG0065|consen 1241 FMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDV 1318 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999997 465 79999999999999999999998
Q ss_pred ccCCCCCc--------cccHHHHHhhhcC----ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 623 SFPVGQVR--------TISGYQALQSAYD----ISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 623 ~~~~~~~~--------~~~G~~~L~~~~~----~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
+-.|...+ ..+-.++++..+| +-. +..-....+.+.+.+++.+++.+..++..+-
T Consensus 1319 ~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~--n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1319 EVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLH--NPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred ceeeecCCccccCCCCCcCHHHHHHHHhccCcceec--cCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence 77664332 2344567777677 411 1112223455667888888888888776543
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-85 Score=765.33 Aligned_cols=541 Identities=26% Similarity=0.434 Sum_probs=478.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCccEEEEcCccccCCCCCH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV 199 (697)
...+|+|++|.++|||++.++||.||||||||++|+|.++......|+|.+||.+.+ .+++.++|+.|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 357999999999999999999999999999999999998765555789999998643 235789999999999999999
Q ss_pred HHHHHHHHHcCCCccc----cc----------------------------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 200 REYLYYSALLQLPGFF----CQ----------------------------RKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~~----~~----------------------------~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+|+|.|++.++.+... .| -.+|+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999999998876321 11 128999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCCCCCCCCCc
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 326 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~p 326 (697)
+|+|||+.++.++++.||++++ .+.|++++++||+++++++||+|++|.+|++||+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999995 589999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccchhHHHhhhcccccCCCCCcccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc----cCCCcCCCCC
Q 005423 327 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK----EGPFLKSKGK 402 (697)
Q Consensus 327 ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~ 402 (697)
|||+.++.+ ..+. .+.+..+.... ......++.+.|.+++.++++...++..... +.....+++.
T Consensus 367 ADfLt~vts-~k~~----~~~~~~~~~~~------~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~ 435 (1391)
T KOG0065|consen 367 ADFLTEVTS-KKDQ----EQYWNKRSKPY------PYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYS 435 (1391)
T ss_pred HHHHHHhhc-Cccc----cccccccCCCc------ccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCcee
Confidence 997766555 2111 11111111111 1112357889999999998887776543221 1223346789
Q ss_pred CCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005423 403 ASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPALM 481 (697)
Q Consensus 403 ~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l~-~~~~~i~~r~g~lff~~~~~~~~~~~~v~~~~ 481 (697)
.++|.|++.|+.|.++.+.||..++..++++.+++|+++|++|++.+ .+..+...|.|++||++++.+|++++.++..+
T Consensus 436 v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~ 515 (1391)
T KOG0065|consen 436 VPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTF 515 (1391)
T ss_pred ccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 88888999999999999999999999999999
Q ss_pred HhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005423 482 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 561 (697)
Q Consensus 482 ~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~ 561 (697)
+.||||+|||...+|+++||.++.++.++|+.++.+++|.+|+||++||.+++++||+++++++++.+|+.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCC------------C
Q 005423 562 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ------------V 629 (697)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~------------~ 629 (697)
+++...|+.++++.++++.+++||+||.++||+ |+.|++|+||+.|++|+|+.|||++.+++|.+ .
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~ 673 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENK 673 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccc
Confidence 999999999999999999999999999999985 77789999999999999999999999998861 0
Q ss_pred ---------c--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005423 630 ---------R--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 677 (697)
Q Consensus 630 ---------~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~ 677 (697)
| ++.|.++++..|++ ...+.|+|++|++||.++|.++..+++-+.+
T Consensus 674 ~c~~~~~~~G~~~v~g~~~l~~~~~y--~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 674 VCAATGATLGNDYVSGRDYLKVQYQY--EYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cchhhccccCceEEeccccccccccc--ccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1 45777777776776 4689999999999999999999999988766
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-50 Score=394.51 Aligned_cols=198 Identities=27% Similarity=0.358 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|. ...+|+|||+++++||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~fg-----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSFG-----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEeC-----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 478999999983 5689999999999999999999999999999999999999886 999999975422
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+|+|+|+..|||++||.||+.++- .+++.+..+.+|.+|||||||||||||||+.
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 2467999999999999999999997752 3456777788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+++++|||||+|||+...+|++.+++|+++|.|.||+||.. ..+.+.+|||+.|++|+++..|++++++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999988875 58889999999999999999999887653
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=384.91 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=181.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..++.....+|+|||++|++||+.+|+|.||||||||+|++.++..|++ |+|.++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 68999999997543334679999999999999999999999999999999999999986 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.||+++|+..|+...||.||+.|.. ..++++..+++|.+|||||||||+|||||+.
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 2467999999999999999999998853 3456777788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+||++|||||+|||.+...|+++|+++.+ .|.||++++|+. +.+.++||||.||++|++|+.|++.+++.
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999999999999985 599999988886 68999999999999999999999988764
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-46 Score=370.99 Aligned_cols=208 Identities=25% Similarity=0.434 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++||++.|. .+.+++|+|++|++||+++++|||||||||+||+|.++++|++ |+|.+||+++.. .
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999984 5679999999999999999999999999999999999999986 999999998654 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCC--ccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLP--GFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~--~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.+|||-|+..|||++||.||+.+.- .++++ ++.+++|++|||||+|||.+||||+.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 568999999999999999999997632 33454 367899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhhcCC
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGF 318 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~ 318 (697)
|+||++|||+++|||.++.++-+.++++++ -|+|||++||+ .+|+++++|||++|++|+++.+++|++++.
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~------- 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA------- 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh-------
Confidence 999999999999999999999999999985 59999998776 579999999999999999999999999875
Q ss_pred CCCCCCCchHHHHHHhc
Q 005423 319 PCPIMQSPSDHFLRAIN 335 (697)
Q Consensus 319 ~~p~~~~pad~~l~~~~ 335 (697)
||++-|+..+.
T Consensus 226 ------~Pan~FV~~f~ 236 (309)
T COG1125 226 ------NPANDFVEDFF 236 (309)
T ss_pred ------CccHHHHHHHh
Confidence 67766766543
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-45 Score=365.66 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..+++++|++++ +.+.+++|||++|++||+++||||||||||||||+|.|+++|+. |+|.++|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHH
Confidence 469999999998 45689999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcc-ccccCCCCCHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGF-FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~-~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++++|+++|+..||..+||+||+.|.. ..+|++. .+..|.+|||||+||++|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 2357999999999999999999998732 2345555 67789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||++||||+||||.++..+.+++++|++ -|.|+++++|+. .+++.+|||+++|.+|+|+++|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999985 489999988875 58999999999999999999999999864
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-45 Score=375.24 Aligned_cols=198 Identities=27% Similarity=0.381 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|.. |+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 488999999994 5689999999999999999999999999999999999999876 999999997643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++||||.......+||+|.+.++.. +++.+...+...+|||||||||.|||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 23579999999888888999999977532 2233334556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+||+||||||+||...+.++++++++++ ++|+|||+++|++ ..+..+||++++|++|++++.|+++++++
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99999999999999999999999999999999 5699999998887 47889999999999999999999998863
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.9e-45 Score=364.45 Aligned_cols=189 Identities=30% Similarity=0.415 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..+.. ...+|++||+.+++||++||+|||||||||||++|.|+..|++ |+|.++|++...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 568999998864332 2679999999999999999999999999999999999999876 999999986532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCcccc-ccCCCCCHHHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFC-QRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~-~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+|||+|+..|+|.+||.||+.+... +++.+... +++.+|||||||||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 23579999999999999999999986422 23443344 67899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.+|++|++||||.+||+.++.+|+++|++++++ |+|||++||++ ++...|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999865 89999999986 57889999999999993
No 16
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=365.47 Aligned_cols=185 Identities=32% Similarity=0.427 Sum_probs=169.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++++++.|. ...+|+|||+++.+||+++|+||||||||||||+|+|+.+|++ |+|.++|++...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 588999999985 3689999999999999999999999999999999999999986 99999999887777889
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+||+|++.|+|.+||.||+.++.. .+|.+..+++|++|||||||||+|||||+.+|+||+|
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999977542 3466677889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
|||+++||+.|+.++.+.|.++. +.++||+++||+. +|+..++|||++|.++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999997 5689999988765 6888999999999984
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=359.87 Aligned_cols=199 Identities=31% Similarity=0.418 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+ ..+++|+|||+.+++||++||+||||||||||||+|+|+.+++. |+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 3 MIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGKE 75 (258)
T ss_pred eEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchHH
Confidence 689999999997 35689999999999999999999999999999999999998876 999999976422
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH---------cCCC------------------ccccccCCCCCHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL---------LQLP------------------GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------l~l~------------------~~~~~~~~~LSGGqrqR 229 (697)
.++.+||++|++.|.+.++|.+|+..+.. +++. +..-.+...|||||+||
T Consensus 76 lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQR 155 (258)
T COG3638 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQR 155 (258)
T ss_pred HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHH
Confidence 24679999999999999999999976532 1221 11223447999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+||+.|||+++|||.++.+||+.|++++ ++|.|||++.|+- +.+.++||||+-|++|++||+|++++
T Consensus 156 VaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999998 5689999999986 57889999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+-+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 543
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-44 Score=378.18 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.+.++||++.|.. .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 4788999999841 4689999999999999999999999999999999999999875 999999987543 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCC-------------------ccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP-------------------GFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~-------------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||+|+|.|.+.++.. +..+++.++||+||||||+||+||+.+|+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999997655432 21234568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+|||||||+|||+.++.++.+.|++++++| +||++++|++ .++..+||+|++|++|+++++|+++++...+..
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 999999999999999999999999999887 7999988876 588899999999999999999999887665543
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=384.43 Aligned_cols=199 Identities=28% Similarity=0.429 Sum_probs=180.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (697)
..++++||++.|. ...+|+|+|+.|++||+++|+||||||||||||+|+|+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4689999999983 5689999999999999999999999999999999999999986 999999998643 3
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++.+|+|+|+..|||++||+||+.|+.. +++.+...+++++|||||||||+|||||+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 5789999999999999999999999754 23445567788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|+||||.|+||..-+.++..-|+++++ .|.|.|++||+. .|+..++|||++|++|+|...|+++++..
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999999984 599999988875 68999999999999999999999999854
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-44 Score=379.26 Aligned_cols=199 Identities=30% Similarity=0.460 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|.+ ..+|+|+|+++++||+++|+||||||||||||+|||+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 5899999999842 129999999999999999999999999999999999999986 999999998654 24
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+++|+|+..|+|++||+||+.|+.. +++.+.+++++.+|||||||||||||||+.+|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 789999999999999999999998753 4556677889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++||||+|+||+..+..+...|+++.+ .|.|+|.+||+. .|+..++|||++|++|++...|++.++.++
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999985 488999987775 689999999999999999999999998653
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-44 Score=366.96 Aligned_cols=199 Identities=29% Similarity=0.414 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (697)
.+.++|+++.+. ...+++|||+.|+.||++||+||||||||||||+|+|+..|+. |+|.+||+ +...
T Consensus 2 ~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhccc
Confidence 467888887763 4578999999999999999999999999999999999999987 99999998 4332
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..++||||+|+..+|+++||.+|+.|+..+ ++.+..+++|.+||||||||||+||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 236899999999999999999999998633 3444557888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
.+|++|+||||+++||...+.++.+.|+++.++ |.|+++++|++ ++++++||||++|++|+|...|+++++.+.
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 999999999999999999999999999999865 99999977765 699999999999999999999999998764
No 22
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=352.80 Aligned_cols=203 Identities=29% Similarity=0.394 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.++ ....+|+|||+++.+||+++|+|+||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 3 ~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 3 LLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRAK 78 (252)
T ss_pred eEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccch
Confidence 589999999996432 22369999999999999999999999999999999999999976 999999976432
Q ss_pred -CCccEEEEcCcc--ccCCCCCHHHHHHHHH-----------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERET--TLIGSLTVREYLYYSA-----------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-----------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+.+|+||+ .+-|..||++.|.-.. .++++. ...++|++||||||||++|||||+.
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 256799999997 5778889998885432 234443 4678999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+|++||||||||+||+..+.+|+++|.++++ .|.|.|+++|+ ...+..+||||+||++|++|+.++++++.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999985 47899986655 6789999999999999999999999988753
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-43 Score=358.63 Aligned_cols=197 Identities=27% Similarity=0.395 Sum_probs=170.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~ 181 (697)
..++++|+++.|.+ . ++|+|||+.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 36899999999952 2 59999999999999999999999999999999999999875 9999999875443 3
Q ss_pred ccEEEEcCcc---ccCCCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 182 GSYGFVERET---TLIGSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 182 ~~~~yv~Q~~---~l~~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
..||||||.. .-|| .||+|.+..+. .+++.+..++...+|||||+|||-||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 6899999954 3344 69999987642 1233445567779999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|+|||||+|+|+.++..++++|++++++|+||++++|+ ...+.+.||+|+.| ++++++.|+++++.+
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD-L~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD-LGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-cHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999999999889999996665 46899999999999 478899999998764
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.1e-42 Score=371.86 Aligned_cols=200 Identities=23% Similarity=0.300 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|..++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 13479999999999999999999999999999999999999876 999999987632
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|+..+++..||+||+.+... +++.+..++++.+|||||||||+|||||+.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 13579999999999999999999987532 233444566779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++||||||||+||+.++..++++|++++++ |.|||+++|+. ..+.++||++++|++|++++.|++++++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999865 89999988875 5788999999999999999999998875
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-43 Score=341.43 Aligned_cols=200 Identities=25% Similarity=0.367 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~~- 180 (697)
..++++||++.|. .+++|+|||+.+++++++|||||||||||||||+|..+.. ++.+++|+|.++|+++..+
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 3589999999984 5689999999999999999999999999999999998754 3456889999999986432
Q ss_pred ------CccEEEEcCccccCCCCCHHHHHHHHHHcCC-----------------------CccccccCCCCCHHHHHHHH
Q 005423 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------------------PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-----------------------~~~~~~~~~~LSGGqrqRv~ 231 (697)
++++|+|+|.+.-|| +|++||+.|+..++- .+.+++...+|||||+||++
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 468999999999998 899999999854321 12234556799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||+++|.+ ..+.+..|+..++..|++|++|++++++.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999999999999999999999999999999999999 457888877765 68889999999999999999999998864
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-42 Score=372.22 Aligned_cols=199 Identities=26% Similarity=0.445 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999831 3469999999999999999999999999999999999999876 999999987643 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|++.+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l 155 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV 155 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999987632 2344455677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||+.++..+.+.|+++.++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999999999999999999999865 89999988876 57899999999999999999999998754
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.3e-42 Score=380.35 Aligned_cols=249 Identities=26% Similarity=0.315 Sum_probs=200.4
Q ss_pred EEEeCccccchhcCCCCcchhhhcCCCCCCCCCCCch--hhhhccCCceEEEEeEEEEEeccc------ccCcceeeeee
Q 005423 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSSN 130 (697)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~vs 130 (697)
+++|.|++.++...|.|||++.+.++.+......... ........+.++++||++.|..++ .....+++|||
T Consensus 232 ~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VS 311 (539)
T COG1123 232 EIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVS 311 (539)
T ss_pred EEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeee
Confidence 3799999999999999999999976533211100000 000000345689999999997432 23467999999
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------CCCccEEEEcCcc--ccCCCCCHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------MPYGSYGFVERET--TLIGSLTVRE 201 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------~~~~~~~yv~Q~~--~l~~~lTV~e 201 (697)
|.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+.. ..++.+-+|+|++ .|.|.+||.+
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~ 388 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD 388 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHH
Confidence 9999999999999999999999999999999976 99999997621 1124566666664 7889999999
Q ss_pred HHHHHH--------------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 202 YLYYSA--------------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 202 ~l~~~~--------------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.... ..+++. ..++++++||||||||++|||||+.+|++|+||||||+||+..+.+|
T Consensus 389 ~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 389 ILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred HHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 985432 123444 46789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 261 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 261 ~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|++++++ |.|.|+++|+ ...+.++||||+||++|++|+.|+.+++++
T Consensus 469 lnLl~~lq~e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 9999999954 9999996655 678999999999999999999998888764
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5e-42 Score=366.15 Aligned_cols=198 Identities=28% Similarity=0.368 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||+||+.+.+.+ ++.+..++..++|||||||||+||+||+.+|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999864322 23333445668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999988899999988876 58889999999999999999999988764
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.3e-42 Score=371.01 Aligned_cols=198 Identities=26% Similarity=0.409 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987642 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+||++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999988632 2344555678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++.++.+.|+++.++ |.|+|+++|++ .++..+||++++|++|++++.|+++++.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 58899999999999999999999988764
No 30
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-42 Score=330.65 Aligned_cols=195 Identities=29% Similarity=0.427 Sum_probs=170.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC-Cc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-YG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~-~~ 182 (697)
+.+++|.+.|.. .==..+.++.+||++||+|||||||||||++|+|+..|.. |+|.+||++.. .+ .+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456677777642 2234578889999999999999999999999999998876 99999999743 22 36
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-------------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-------------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
-++.++|+..||.++||.+|+.++ +..++.++.++.|.+|||||||||+|||.|+.+-+||
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 699999999999999999999664 2345667778889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+||||+|+||+.-+.+++.++.+++ +++.|+++++|||. ++.+++|+++++++|+|.+.|+.++.+.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 9999999999999999999999998 56899999999995 7889999999999999999999987653
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-42 Score=350.89 Aligned_cols=196 Identities=29% Similarity=0.400 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46889999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 13469999999999999999999976422 12333345566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999999999987 489999988876 4788899999999999999999887653
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-43 Score=337.25 Aligned_cols=198 Identities=31% Similarity=0.389 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
+++++++++|+. ..++++||||.++.||+++|+|||||||||+||+|++++.|+. |+|.++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678899988853 3459999999999999999999999999999999999999986 999999987432 35
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|.++.+..++..+|++|||.|.+.+ ++.+..+++..++|.|+||||+|||||+++|++
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 7899999888999999999999886532 334455677799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|||||||||..+...+.+.+++++++|++||+++|. ..++.++||+|++|++|++|+.|+.+++..
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999997776 579999999999999999999999987654
No 33
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=368.98 Aligned_cols=198 Identities=27% Similarity=0.458 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. |+|.++|+++.. .+
T Consensus 6 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999876 999999987643 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 679999999999999999999988632 2334445677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||+.++.++.+.|+++.++ |+|+|+++|++ .++..+||+|++|++|+++..|+++++..
T Consensus 158 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999865 89999988876 58889999999999999999999998754
No 34
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.4e-42 Score=328.92 Aligned_cols=192 Identities=25% Similarity=0.336 Sum_probs=171.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------- 178 (697)
++|+||++.|++ .+.+|+||||.+++||++-|+||||||||||||+|.+...|+. |+|.+||++..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999963 3679999999999999999999999999999999999999876 99999998742
Q ss_pred -CCCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 179 -MPYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
..+++||.|+||..|+++.||+||+.|... .+|.+....-|.+|||||||||+||||++.
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 125789999999999999999999988632 344455556778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+|++||.||||-+||+..+.+|++++.++.+.|+||++++|+ ...+..+-.|++.|++|+++....
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999998776 467888899999999999987653
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.2e-41 Score=366.72 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998862 23999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++++||+||+.|... +++.+..++.+++|||||||||+|||||+.+|++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999987532 2344455678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++.++.+.|++++++ |+|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999876 78999988876 57899999999999999999999998864
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.7e-41 Score=367.54 Aligned_cols=198 Identities=26% Similarity=0.384 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 14 ~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 14 LVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAEN 85 (375)
T ss_pred eEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 999999997632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|++.+++++||+||+.|+.. +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999987532 2344455677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++..+.+.|++++++ |+|+|+++|++ .++..++|+|++|++|+++..|+++++.+
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 58899999999999999999999988754
No 37
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-41 Score=338.39 Aligned_cols=195 Identities=31% Similarity=0.497 Sum_probs=170.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.+.|+|+++.|+.++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997543 45679999999999999999999999999999999999998321134999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++.+||+||+.+..... .++....||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 157 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH
Confidence 356999999999999999999998875433 4567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 261 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 261 ~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+.|++++++ +.|+|+++||+..++.++||++++|++|++++.|
T Consensus 158 ~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999865 6788887888777888999999999999998765
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.6e-41 Score=363.79 Aligned_cols=200 Identities=28% Similarity=0.369 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.|. .+.+|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999984 3469999999999999999999999999999999999999876 999999987542
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||.||+.+... +++++..+++.++|||||||||+||+||+.+|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23579999999999999999999976432 12333345667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+.
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999988899999988875 588999999999999999999999987653
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=365.00 Aligned_cols=198 Identities=26% Similarity=0.387 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 2469999999999999999999999999999999999999876 999999987632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+.++||+|++.+++++||+||+.|... +++++..++++.+|||||||||+|||||+.
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999987532 123344456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 154 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999865 89999988776 58899999999999999999999988754
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=346.76 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.+.++|+++.|++. ..+|+++|+.+++||.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhHH
Confidence 47899999999632 589999999999999999999999999999999999999976 99999998743
Q ss_pred CCCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 179 MPYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 179 ~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..++.+|||+|++ +++. -||.|.+.|+. .+++.+..++.+..|||||||||+||.+|+
T Consensus 76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred HhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 2357899999986 5664 59999998863 234555567888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
++|++|+|||||||||+..+.++++.+++|.++ |+|+|+++|+ ...+.++||++++|++|+++++|++.++++.
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999977 6899997776 4689999999999999999999998887653
No 41
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-41 Score=355.59 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=179.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 68999999995322122469999999999999999999999999999999999999876 999999987531
Q ss_pred ---CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++ .+++ .||.||+.|... +++. ...++.++.||||||||++|||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 134699999986 5665 599999987531 1343 2345677999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ--- 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~--- 311 (697)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+|++|++|++++.|+++++.+
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~ 236 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHH
Confidence 99999999999999999999999999999999988899999988876 57888999999999999999999998753
Q ss_pred hhhhcCCCCCCC
Q 005423 312 HFSNAGFPCPIM 323 (697)
Q Consensus 312 ~f~~~g~~~p~~ 323 (697)
.+...|+.+|..
T Consensus 237 ~~~~~~~~~p~~ 248 (288)
T PRK13643 237 FLKAHELGVPKA 248 (288)
T ss_pred HHHHcCCCCChH
Confidence 344567776654
No 42
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-41 Score=340.67 Aligned_cols=197 Identities=30% Similarity=0.389 Sum_probs=169.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.|.+.. ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|.+ |+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 36889999885211 11479999999999999999999999999999999999998875 999999987654456799
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
|++|++.+++.+||+||+.+... +++....++.+.+||||||||++|||||+.+|++||||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999988999999976432 12333345567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCch
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 307 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 307 (697)
|||+|||+.++..+.+.|+++.+ .|+|||+++|++ .++.++||++++|+ +|++++.++++
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999964 589999988886 46788999999999 79999988764
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.8e-41 Score=357.24 Aligned_cols=198 Identities=27% Similarity=0.353 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 4 AIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLA 75 (303)
T ss_pred EEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+||+||+.+... +++++..++.+++|||||||||+|||||+.+|+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999975321 123333455668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988899999988876 57889999999999999999999988754
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=364.50 Aligned_cols=198 Identities=23% Similarity=0.388 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. |+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 599999999984 2469999999999999999999999999999999999999876 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|++.+|+++||.||+.|... +++.+..++++++|||||||||+|||||+.+|++
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 679999999999999999999987632 2334445677899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||++||..++..+.+.|+++.+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999999999999875 589999988876 58899999999999999999999998764
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-41 Score=340.06 Aligned_cols=190 Identities=29% Similarity=0.465 Sum_probs=164.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 36789999884 2469999999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|++||+.+... +++....++.+..|||||||||+|||+|+.+|++|
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~l 152 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLL 152 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999976432 12333344566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999986 489999988876 4788899999999999998765
No 46
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-41 Score=331.34 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 48899999988 34689999999999999999999999999999999999999865 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHcCC-------------------CccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-------------------PGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-------------------~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
+..++||||...+|+.+||+|||..++..+- .+..+++...|||||||.++|||||+.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 3569999999999999999999987653321 1122344578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|+|||||.||-|.-..+|.+.+++++++ |.||++ ++|....+.+++||.+||.+|++++.|+.+++.+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999965 778888 7888889999999999999999999999998764
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.4e-41 Score=340.59 Aligned_cols=188 Identities=25% Similarity=0.327 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998521 2369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||||+.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12469999999999999999999986421 223334456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999987789999988876 478889999999999974
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=343.00 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=170.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++... .+
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCccc
Confidence 478999999984 2469999999999999999999999999999999999998875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+.++|++|++.+++.+||+||+.+.... ++....++.+.+|||||||||+|||||+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 5699999999999889999999865321 12222344568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999865 89999988886 4678899999999999999999887653
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-41 Score=340.53 Aligned_cols=194 Identities=27% Similarity=0.345 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46889999884 2469999999999999999999999999999999999998875 999999986532 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++....++.+..|||||||||+|||||+.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999976432 1233333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999876 89999988876 57888999999999999999988765
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.5e-41 Score=342.30 Aligned_cols=196 Identities=24% Similarity=0.389 Sum_probs=169.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46889999884 2469999999999999999999999999999999999998875 999999987432
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.++|++|++.+++.+||+||+.+.... ++....++.++.|||||||||+|||||+.+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 124599999999999999999999864321 2222234556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999999999999999999999999988899999988886 4788999999999999999999887653
No 51
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=364.45 Aligned_cols=198 Identities=30% Similarity=0.468 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 489999999984 2469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++||+|+..+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l 154 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999987532 2333445667789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 155 LLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864 89999988876 57889999999999999999999988754
No 52
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=360.73 Aligned_cols=201 Identities=22% Similarity=0.293 Sum_probs=174.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|..++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999985211 13579999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 3569999999999999999999987532 233344456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++..
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999864 89999988876 57888999999999999999999887753
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=350.24 Aligned_cols=203 Identities=23% Similarity=0.341 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+......+.+|+|||+++++||++||+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 378999999985322112479999999999999999999999999999999999999875 999999987632
Q ss_pred --CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCC--ccccccCCCCCHHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLP--GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~--~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.+|||+|++. .+...||+||+.+... +++. ...++.++.||||||||++||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 1357999999863 2235799999976421 2343 33567789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999988875 57888999999999999999999988754
No 54
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=355.15 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=177.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|..+....+.+|+|||+++++||++||+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4699999999996322123469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCC
Q 005423 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKN 220 (697)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~ 220 (697)
.++.++||+|++ .+++ .||+||+.++.. ++++ ...++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 134699999986 5665 499999977431 2343 33556778
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +++.++||++++|++|++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVIVMDKGKI 254 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999987899999988875 467889999999999999
Q ss_pred EEEeCchhhHH---hhhhcCCCCC
Q 005423 301 LFFGETLACLQ---HFSNAGFPCP 321 (697)
Q Consensus 301 v~~G~~~~~~~---~f~~~g~~~p 321 (697)
++.|+++++.+ .+...|+.+|
T Consensus 255 ~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 255 LKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999987753 2334455544
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=342.94 Aligned_cols=196 Identities=29% Similarity=0.446 Sum_probs=168.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 368899998842 1469999999999999999999999999999999999998865 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqrqRv 230 (697)
++.++|++|++.+++.+||+||+.+... +++....++.+.+|||||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 2469999999999988999999975321 1222233456689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999999986 489999988886 478889999999999999999988775
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=341.73 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=171.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 67899999885210 11279999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
++.++|++|++.+++.+|++||+.+... +++.+..++.+..|||||||||+|||+|+.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 3469999999999998999999976432 123333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999865 89999988886 5788899999999999999999877653
No 57
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-40 Score=339.60 Aligned_cols=196 Identities=24% Similarity=0.364 Sum_probs=169.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46889999874 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+|++||+.+.... .+....++..++||||||||++|||||+.+|+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 24699999999999999999999765321 12222345568899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999987889999988876 5788999999999999999999877653
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-40 Score=342.38 Aligned_cols=196 Identities=25% Similarity=0.337 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 36789999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------------CCCccccccCCCCCHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------------QLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------------~l~~~~~~~~~~LSGGqrqRv 230 (697)
+..++|++|++.+++.+||+||+.+.... ++....++.+++|||||||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 24599999999999999999999765321 122223445578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999999987889999988876 4788899999999999999999887753
No 59
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-40 Score=351.26 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|.......+++|+|||+++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 378999999995322122469999999999999999999999999999999999999875 999999987631
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++||+|++ .++ ..||.||+.+.. .+++. ...++.++.|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 124699999986 455 469999997652 12343 334567899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+|+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+++++.
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999864 89999988876 5788999999999999999999988875
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-40 Score=343.55 Aligned_cols=196 Identities=29% Similarity=0.410 Sum_probs=168.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|.. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998741 3469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH---------------------------HcCCCccccccCCCCCHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA---------------------------LLQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------------------~l~l~~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++.+||+||+.+.. .+++....++.+..|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 1346999999999999899999996521 01222333456689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999999975 489999988876 467889999999999999999988764
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.3e-40 Score=335.04 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 234
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++..|++||+.+... +++....++.++.||||||||++|||+|+.+|++|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 152 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999976421 12223345566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999986 489999988876 4788899999999999999876
No 62
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.4e-40 Score=335.66 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 36889999884 2469999999999999999999999999999999999998875 999999986532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|++.+++.+||+||+.+... +++.+..++.++.|||||||||+|||+|+.+|++|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 69999999999999999999976532 122333345668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999988889999988876 4777899999999999998765
No 63
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-40 Score=352.52 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++|+++.|+++......+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 478999999996432223469999999999999999999999999999999999999875 99999986531
Q ss_pred -----------------------CCCccEEEEcCcc--ccCCCCCHHHHHHHHH-------------------HcCCC-c
Q 005423 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSA-------------------LLQLP-G 213 (697)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~-------------------~l~l~-~ 213 (697)
..++.+|||+|++ .++ ..||+||+.|.. .+++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 0124689999985 455 469999998753 12343 3
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
..++.+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+.++||||+
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~adrv~ 236 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVLEWTKRTI 236 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHHHhCCEEE
Confidence 45677899999999999999999999999999999999999999999999999988899999988875 57889999999
Q ss_pred EEeCCeEEEEeCchhhHH
Q 005423 294 LLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 294 vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|++++.|+++++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 999999999999988753
No 64
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.2e-40 Score=359.44 Aligned_cols=186 Identities=27% Similarity=0.376 Sum_probs=166.3
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEcCccc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETT 192 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~ 192 (697)
.+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4569999999999999999999999999999999999999876 9999999876421 457999999999
Q ss_pred cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 193 LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 193 l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
+++++||+||+.+... +++....++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999999999987532 234445567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 254 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.++..+.+.|++++++ |+|||+++|+. .++.++||+|++|++|+++..|++++++.
T Consensus 162 ~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 162 PLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999854 89999988875 57889999999999999999999988754
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-40 Score=336.60 Aligned_cols=196 Identities=27% Similarity=0.397 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4688999988421 2569999999999999999999999999999999999998875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++.+..++...+|||||||||+|||+|+.+|++
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999989999999976432 1233333455689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999986 58999988876 477789999999999999999987653
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-40 Score=339.33 Aligned_cols=196 Identities=25% Similarity=0.366 Sum_probs=170.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 67899999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||+||+.+... +++....++.+..||||||||++|||||+.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 13469999999999988999999976421 122223345668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999999987799999988886 4788899999999999999999887754
No 67
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=343.59 Aligned_cols=195 Identities=24% Similarity=0.320 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....++.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 3589999999984 2469999999999999999999999999999999999998875 9999999875444567
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
++|++|++.+++.+||+||+.+.. .+++.+..++.+.+|||||||||+|||+|+.+|++|||||||+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999999998899999997531 1334444566778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 251 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999964 589999988876 4678899999999999999988754
No 68
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.5e-40 Score=354.23 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=174.5
Q ss_pred ceEEEEeEEEEEecccc--------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
..++++||++.|..++. ....+|+|||+++++||+++|+|+||||||||+++|+|++++.+ |+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 46999999999963211 13579999999999999999999999999999999999998865 99999998
Q ss_pred eCCC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCC
Q 005423 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLP 223 (697)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LS 223 (697)
++.. .++.++||+|++ .+++.+||.||+.+... ++++ ...++++++||
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 7532 135699999997 58889999999865321 2232 23467789999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 224 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 224 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
|||||||+|||||+.+|++||+||||+|||..++.+|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999977775 57888999999999999999
Q ss_pred EeCchhhHH
Q 005423 303 FGETLACLQ 311 (697)
Q Consensus 303 ~G~~~~~~~ 311 (697)
.|+++++++
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 999988753
No 69
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=345.05 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999842 2469999999999999999999999999999999999999875 9999999876421
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...||.||+.+... +++.+..++.+.+|||||||||+|||||+.+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 246999999963 3446799999987422 1233344567789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999987799999988876 577889999999999999999998653
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.3e-40 Score=341.28 Aligned_cols=197 Identities=27% Similarity=0.356 Sum_probs=170.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 388999999984 2369999999999999999999999999999999999998875 999999986431
Q ss_pred --------CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHH
Q 005423 180 --------PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++..||.||+.+... +++....++.+++|||||||||+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 12469999999999988999999976321 12333334567899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988876 5788899999999999999999987764
No 71
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-40 Score=353.34 Aligned_cols=186 Identities=27% Similarity=0.328 Sum_probs=165.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CccEEEEcCccccCCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLT 198 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lT 198 (697)
+.+|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 469999999999999999999999999999999999999875 9999999875322 346999999999999999
Q ss_pred HHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 199 VREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 199 V~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
|+||+.+.+. +++....+++.++|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 9999987432 123333456678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 260 i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+.
T Consensus 163 l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 163 IWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999988899999988876 588899999999999999999999887653
No 72
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-40 Score=347.81 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+.+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322123469999999999999999999999999999999999999876 999999987532
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+|||+|++ .+++ .||.||+.+... +++. ...++.++.|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 134699999986 4665 599999987421 2333 234467799999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|+.+|+||||||||+|||+.++..+.++|+++++ .|+|||+++|+. .++.++||++++|++|++++.|++++++.
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999985 589999988876 47888999999999999999999888654
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.1e-40 Score=337.50 Aligned_cols=192 Identities=27% Similarity=0.365 Sum_probs=164.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~- 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEEEECCEEhhhc
Confidence 46889999884 246999999999999999999999999999999999998 6654 999999987432
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCcccccc--CCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQR--KNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~--~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.++ .+||+||+.+.... ++.+..++. +.+|||||||||+
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 134699999999888 78999999764321 122222334 4899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999877 8999988876 47888999999999999999998765
No 74
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-40 Score=346.74 Aligned_cols=243 Identities=24% Similarity=0.294 Sum_probs=203.2
Q ss_pred EEEeCccccchhcCCCCcchhhhcCCCCCCCCCCCchhhhhccCCceEEEEeEEEEEecccc------cCcceeeeeeeE
Q 005423 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNGY 132 (697)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~ 132 (697)
+++|.|.+...++.|.|||++.+.++.+...+.+... ..++.++.+|+.+.|+.++. ....++++||++
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~ 309 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT 309 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEeccceeE
Confidence 3799999999999999999999987643322222111 13457999999999975532 224699999999
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCccEEEEcCcc--ccCCCCCHHHH
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVREY 202 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~e~ 202 (697)
+++||.++|+|+||||||||-++|.+++++. |+|.++|+++.. .++.+-.|+||+ .|-|.+||.+.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999875 999999987642 245688999997 57889999998
Q ss_pred HHHHHHc---------------------CC-CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 203 LYYSALL---------------------QL-PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 203 l~~~~~l---------------------~l-~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
+.-+... ++ |...+++|++.|||||||++|||||+.+|++++||||||+||-..+.+|
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQv 465 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV 465 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHH
Confidence 8665432 22 2345688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 261 MVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 261 ~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|++|+ +.|.+-++++| +...+..+||+|+||++|+||+.|+++++++
T Consensus 466 v~LLr~LQ~k~~LsYLFISH-DL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 466 LDLLRDLQQKHGLSYLFISH-DLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHhCCeEEEEec-cHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 99999998 56899999555 5678999999999999999999999999875
No 75
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.4e-40 Score=344.56 Aligned_cols=197 Identities=22% Similarity=0.358 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChhh
Confidence 589999999884 3469999999999999999999999999999999999998875 999999987531
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|+..+++.+||.||+.+... +++.+..++.+..|||||||||+|||+|
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 12469999999999998999999976421 1233334556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988875 5788899999999999999999987764
No 76
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-40 Score=333.91 Aligned_cols=190 Identities=26% Similarity=0.446 Sum_probs=164.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (697)
++++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .++.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 36889999884 2469999999999999999999999999999999999998875 999999986532 23579
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+|++|++.+++.+||+||+.+.... ++....++.+++|||||||||+|||+|+.+|++|||
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999989999999765321 222223455689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999987789999988876 4788899999999999998764
No 77
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.8e-40 Score=361.03 Aligned_cols=197 Identities=28% Similarity=0.374 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999875 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++||+|+..++..+||+||+.++.. +++.+..++..++|||||||||+|||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL 154 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL 154 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 13569999999999889999999976421 1222233456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+++|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++|||+++|++|++++.|++++++
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999988889999988875 5888999999999999999999998754
No 78
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.8e-40 Score=349.74 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHHH
Confidence 478999999984 3469999999999999999999999999999999999999876 9999999875332
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+||++|++.+++.+||.||+.+.+.+ ++.+..++..+.|||||||||+|||||+.+|+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 35699999999999999999999864422 23333456668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+.+++..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999975 78999988876 58899999999999999999999998765
No 79
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=338.79 Aligned_cols=197 Identities=21% Similarity=0.335 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------c-CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------L-QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l-~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.++|++|+..+++.+||.||+.+... + .+.+...+.++.||||||||++|||+|+.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 12469999999999988999999976421 1 1112223456889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999988899999988876 5788999999999999999999988764
No 80
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.2e-40 Score=334.40 Aligned_cols=194 Identities=32% Similarity=0.462 Sum_probs=166.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++++. ...++|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 67899999985321 11269999999999999999999999999999999999998875 999999987542 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||+||+.+... +++.+..++..+.||||||||++|||||+.+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999976432 1223333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999987899999988876 4788899999999999998754
No 81
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-40 Score=332.57 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=159.3
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEE
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYG 185 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (697)
++|+++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|.+... .++.++
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcceE
Confidence 5788888742 1469999999999999999999999999999999999998875 999999987532 235699
Q ss_pred EEcCccc-cCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 186 FVERETT-LIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 186 yv~Q~~~-l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
|++|++. .+..+||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|||||||
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999974 2346799999976421 23444456677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 250 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999987899999988876 4678899999999999975
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-40 Score=338.24 Aligned_cols=197 Identities=28% Similarity=0.459 Sum_probs=170.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 367899998842 1469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCc--cccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPG--FFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++.+++.+||+||+.+... +++.. ..++.+.+|||||||||+|||||+.+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999976421 23332 34566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999864 89999988886 4778899999999999999999887653
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.6e-40 Score=334.89 Aligned_cols=189 Identities=30% Similarity=0.386 Sum_probs=160.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|.+.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46889999885311 11479999999999999999999999999999999999998875 999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+||+||+.+.... ++....++.++.|||||||||+|||||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc
Confidence 124699999999999999999999875321 2233334566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999987 5899999888874 555 9999999999974
No 84
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-40 Score=344.93 Aligned_cols=196 Identities=26% Similarity=0.345 Sum_probs=168.3
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (697)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 4556766663 4569999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
..+.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 12469999999999989999999976421 233334456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999975 489999988876 47889999999999999999999877643
No 85
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-40 Score=344.56 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.. ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 48999999998521 12459999999999999999999999999999999999999875 999999987642
Q ss_pred CCccEEEEcCcc-ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 PYGSYGFVERET-TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++ ..+...||+||+.+... +++.+..++.+..||||||||++|||||+.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 124699999997 36667899999987521 2334445667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh---hhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH---FSN 315 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~---f~~ 315 (697)
|++|||||||+|||+.++..+++.|++++++ |+|||+++|+.. ++ ..||++++|++|+++..|+++++... +..
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 236 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQ 236 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHH
Confidence 9999999999999999999999999999865 999999888864 55 57999999999999999999876532 334
Q ss_pred cCCCCC
Q 005423 316 AGFPCP 321 (697)
Q Consensus 316 ~g~~~p 321 (697)
.|+++|
T Consensus 237 ~~~~~~ 242 (279)
T PRK13650 237 LGLDIP 242 (279)
T ss_pred cCCCCc
Confidence 455433
No 86
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-39 Score=349.94 Aligned_cols=206 Identities=25% Similarity=0.293 Sum_probs=173.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|+++++...+|+|.++|+++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3689999999986321 234699999999999999999999999999999999999987522359999999875321
Q ss_pred ------CccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHHH
Q 005423 181 ------YGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrqR 229 (697)
.+.++||+|++ .+.+.+|+.+++.... .+++++ ..++.+++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 14699999997 6888899988875421 123332 1345789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++||+||||+|||..++.+|+++|++++++ |.|+|+++|+. ..+.++||++++|++|++++.|++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 89999987775 57888999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+++
T Consensus 249 i~~ 251 (330)
T PRK09473 249 VFY 251 (330)
T ss_pred HHh
Confidence 754
No 87
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-40 Score=339.85 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------------------cCCCccccccCCCCCH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------------------LQLPGFFCQRKNGLPC 224 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------------------l~l~~~~~~~~~~LSG 224 (697)
+..++|++|++.+++.+||+||+.+... +++....++.+++|||
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAY 156 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCH
Confidence 2358999999999999999999986421 1122223455688999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999875 89999988876 578899999999999999999
Q ss_pred eCchhhH
Q 005423 304 GETLACL 310 (697)
Q Consensus 304 G~~~~~~ 310 (697)
|+++++.
T Consensus 236 ~~~~~~~ 242 (255)
T PRK11300 236 GTPEEIR 242 (255)
T ss_pred CCHHHHh
Confidence 9987754
No 88
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.4e-40 Score=331.63 Aligned_cols=186 Identities=25% Similarity=0.340 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 678999998841 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+... +++.+..++.+..|||||||||+|||||+.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 13469999999999988999999987521 123333445668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 155 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999987899999988886 57888999999999985
No 89
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=349.31 Aligned_cols=203 Identities=21% Similarity=0.227 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccc-----cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 005423 105 SVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (697)
.++++||++.|..+.. ....+|+|||+++++||++||+|+||||||||+++|+|++++.+ |+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcCc
Confidence 5899999999963211 13579999999999999999999999999999999999998865 999999987532
Q ss_pred --------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHH
Q 005423 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrq 228 (697)
.++.++||+|++ .+.+.+||.+++.... .++++ ...++++++|||||||
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 135699999997 5888899998885421 12343 2356778999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|++||+||||++||..++.+|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+++
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 89999977765 5788899999999999999999998
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
++++
T Consensus 241 ~~~~ 244 (327)
T PRK11308 241 QIFN 244 (327)
T ss_pred HHhc
Confidence 8754
No 90
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-40 Score=337.18 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=170.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecccccccc
Confidence 478999999984 2469999999999999999999999999999999999998875 99999998642
Q ss_pred -----CCCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccccCCCCCHHHHHHHHHH
Q 005423 179 -----MPYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 179 -----~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~~~~~LSGGqrqRv~IA 233 (697)
..++.++|++|++.+++.+||.||+.+.. .+++....++.+.+||||||||++||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 01346999999999999999999996411 12334444566789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999999987799999988886 477789999999999999999987653
No 91
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-39 Score=324.35 Aligned_cols=188 Identities=46% Similarity=0.732 Sum_probs=165.5
Q ss_pred ceEEEEeEEEEEeccc-ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 005423 104 ASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~- 179 (697)
..++++|+++.|+..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.. |+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchH
Confidence 3589999999985310 01256999999999999999999999999999999999999 7765 999999987642
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
.++.++|++|++.+++.+|++||+.+...+. .||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHhc----------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 2457999999999998999999998765321 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 149 ~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 149 QVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999998779999999998865788899999999999998764
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.6e-39 Score=336.68 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=168.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~---- 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68899999884 236999999999999999999999999999999999999875 0114999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .|+.||+.+.... ++. ...++.+++|||||||||+|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 1356999999998888 9999999864321 222 23345678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999874 8999988876 4788899999999999999999987764
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=339.06 Aligned_cols=197 Identities=25% Similarity=0.274 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccccccc
Confidence 489999999984 2469999999999999999999999999999999999998875 999999986531
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc-cccCCCCCHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF-CQRKNGLPCG 225 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~-~~~~~~LSGG 225 (697)
.++.++|++|++.+++.+||+||+.+.. .+++.... ++...+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 1246999999999999899999997632 11233222 4566899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987899999988876 57888999999999999999998
Q ss_pred chhhH
Q 005423 306 TLACL 310 (697)
Q Consensus 306 ~~~~~ 310 (697)
.++..
T Consensus 236 ~~~~~ 240 (257)
T PRK10619 236 PEQLF 240 (257)
T ss_pred HHHhh
Confidence 87754
No 94
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=344.35 Aligned_cols=202 Identities=21% Similarity=0.274 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|.+.....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999985211112469999999999999999999999999999999999999876 999999987531
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .++ .+||.||+.+... +++. ...++.+++|||||||||+||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 124699999996 355 5799999976421 2343 334567789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987899999987775 57889999999999999999999887653
No 95
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=337.92 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=167.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68899999884 2469999999999999999999999999999999999998875 999999987644445689
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||+|+.+|++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999988999999976421 12223334567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCch
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 307 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 307 (697)
|||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999964 589999988876 47889999999998 59999887654
No 96
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-39 Score=333.77 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=169.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999884 2469999999999999999999999999999999999999875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcC-----------------CCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ-----------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~-----------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
..+.++|++|++.+++.+|+.||+.+..... +....++..++||||||||++|||+|+.+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1246999999999999899999998653211 11223456688999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999874 89999988876 578889999999999999999998775
No 97
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=336.15 Aligned_cols=197 Identities=24% Similarity=0.434 Sum_probs=170.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+||.||+.+.... ++....++..+.|||||||||+|||+|+.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 134699999999999889999999764321 11222234558899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999988899999988876 4788999999999999999999987754
No 98
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-39 Score=323.73 Aligned_cols=186 Identities=41% Similarity=0.671 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-~~ 181 (697)
.++++|+++.|+..+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +|+|.++|++... .+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHhh
Confidence 589999999985311 12469999999999999999999999999999999999863 44 4999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++.+|++||+.+...++ +|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLR----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHh----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH
Confidence 56999999999998899999999865432 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEEEEe
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv~~G 304 (697)
+.|++++++|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 149 ~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999877999999999875456789999999998 9999865
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-39 Score=330.53 Aligned_cols=187 Identities=26% Similarity=0.328 Sum_probs=161.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 367899998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+|++||+.+... +++....++.+.+||||||||++|||||+.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 12469999999999999999999976532 122233345668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999987799999988886 577789999999999974
No 100
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=330.39 Aligned_cols=198 Identities=26% Similarity=0.321 Sum_probs=174.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++.+||++.+ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHHH
Confidence 47899999988 45689999999999999999999999999999999999999987 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHc-------------------------------CCCccccccCCCCCHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-------------------------------QLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------------------~l~~~~~~~~~~LSGGqr 227 (697)
+..++--+|...+|+++||.||+..+... ++.+..++...+||+|||
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 24578889999999999999999876432 223333444578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++- |+...++.+||||+||+.|+++++|+|
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIE-HdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE-HDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEE-eccHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999999997 568998855 556799999999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
+++.+
T Consensus 235 ~eV~~ 239 (250)
T COG0411 235 EEVRN 239 (250)
T ss_pred HHHhc
Confidence 99864
No 101
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=339.17 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=171.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~-~~~~~G~I~i~G~~~~----- 178 (697)
++++||++.|.... +..++++||||++++||++||+|+|||||||+.++|+|++| + ....+|+|.++|++..
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68899999996532 24679999999999999999999999999999999999998 4 3346689999998631
Q ss_pred ----CCCccEEEEcCcc--ccCCCCCHHHHHHHHH---------------------HcCCCc---cccccCCCCCHHHHH
Q 005423 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSA---------------------LLQLPG---FFCQRKNGLPCGERR 228 (697)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~---------------------~l~l~~---~~~~~~~~LSGGqrq 228 (697)
...+.+++++|++ .|.|.+||.+-+.-.. .+++++ ..+.+|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1235799999996 5777788765553221 123333 346788999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++||+ ...+.++||||+||..|++|+.|+++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHD-l~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD-LGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999996 68999996665 56899999999999999999999999
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
+++.
T Consensus 240 ~i~~ 243 (316)
T COG0444 240 EIFK 243 (316)
T ss_pred HHhc
Confidence 8764
No 102
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-39 Score=332.41 Aligned_cols=196 Identities=28% Similarity=0.393 Sum_probs=168.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999884 2469999999999999999999999999999999999998875 999999986532 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+|++||+.+... +++....++.+..||||||||++|||||+.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999988888999999976432 1222333456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++. .||++++|++|++++.|+++++.+
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999985 5899999888874 554 499999999999999998877654
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-39 Score=334.85 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 378999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++.+||+||+.+... +++....++..+.|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 12359999999999999999999976421 12222334556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999976 68999988876 5788899999999999999999877653
No 104
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-39 Score=340.57 Aligned_cols=202 Identities=24% Similarity=0.330 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++.....+++|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccccccc
Confidence 478999999985321112469999999999999999999999999999999999998875 999999987532
Q ss_pred ----CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .+++ .||+||+.+... +++. ...++...+|||||||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 124699999996 4554 699999976421 2232 223556789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987789999988886 47888999999999999999999887643
No 105
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-39 Score=330.74 Aligned_cols=196 Identities=26% Similarity=0.294 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985311 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++|++|++.+++.+||+||+.+... +++.+..++.+.+||||||||++|||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1469999999999999999999976421 2233334556789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|++++.|+.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999975 5899999888874 5554 589999999999988864
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.4e-39 Score=336.35 Aligned_cols=196 Identities=26% Similarity=0.339 Sum_probs=169.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++..
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999884 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHH
Q 005423 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqr 227 (697)
.++.++|++|++.+++..|+.||+.+... +++.+..++.+.+||||||
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 13469999999999999999999976421 1223334456689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 89999988886 478889999999999999999988
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 232 ~~~~ 235 (252)
T TIGR03005 232 DEIF 235 (252)
T ss_pred HHHh
Confidence 7654
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.5e-39 Score=330.02 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=168.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46889999874 2469999999999999999999999999999999999998875 9999999865322 2479
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
+|++|++.+++.+|++||+.+... +++.+..++.+..||||||||++|||||+.+|++|+|||||
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 999999999988999999976432 22333345566899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 250 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999987889999988887 47888999999999999999998653
No 108
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=341.36 Aligned_cols=209 Identities=23% Similarity=0.353 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 5899999999842 2469999999999999999999999999999999999999875 999999987631
Q ss_pred --CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++. .+...||+||+.+... +++.+..++..+.||||||||++|||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1246999999973 2335799999976421 22333445677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---hh
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ---HF 313 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~---~f 313 (697)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. +++.++||++++|++|++++.|++++..+ .+
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 236 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHH
Confidence 999999999999999999999999999999865 89999988876 46778999999999999999999988754 22
Q ss_pred hhcCCCCC
Q 005423 314 SNAGFPCP 321 (697)
Q Consensus 314 ~~~g~~~p 321 (697)
...+.++|
T Consensus 237 ~~~~~~~~ 244 (283)
T PRK13636 237 RKVNLRLP 244 (283)
T ss_pred HHcCCCCC
Confidence 33455544
No 109
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.5e-37 Score=383.98 Aligned_cols=202 Identities=27% Similarity=0.329 Sum_probs=177.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.+.+ +.+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 36999999999842 23579999999999999999999999999999999999999876 999999987642
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||+|++.+.+.+ ++.+..++.+++|||||||||+||+||+.+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 235699999999999999999999875432 2333345567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
+||||||||+|||+.++..+.++|++++ +|+|||+++|+. +++..+||||++|++|+++..|+++++.+.|
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999999999995 689999988876 5888899999999999999999999887655
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=328.94 Aligned_cols=188 Identities=28% Similarity=0.430 Sum_probs=162.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (697)
++++|+++.+. .+.+|+|+|+++++| +++|+||||||||||+++|+|+++|.+ |+|.++|.+.... +
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46889999884 236999999999999 999999999999999999999998875 9999999765321 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.++|++|++.+++.+||.||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999976421 1233334556789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999986 58999987776 5777899999999999998765
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.7e-39 Score=329.54 Aligned_cols=188 Identities=24% Similarity=0.327 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 688999998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++..|++||+.+... +++.+..++.++.||||||||++|||||+.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc
Confidence 13469999999988888999999977431 122333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++..+||++++|++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999987789999988876 4788899999999999975
No 112
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.3e-39 Score=329.74 Aligned_cols=194 Identities=29% Similarity=0.363 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|.++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++|.. |+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 67899999885211 11369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++ .+++.+||+||+.+... +++. ...++.+..|||||||||+||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 134699999998 46678999999865321 1222 123456688999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999865 89999988886 4777899999999999998754
No 113
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=346.65 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (697)
.++++||++.|..++ ....+|+||||++++||++||+|+||||||||+++|+|++++.+ ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 22469999999999999999999999999999999999987422 2369999999875321
Q ss_pred ------CccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHHH
Q 005423 181 ------YGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrqR 229 (697)
.+.++||+|++ .+.+.+||.+++.... .+++++ ..++++++||||||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 13699999997 4788899887664321 123432 2356789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+|||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999986 589999988875 47888999999999999999999988
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+++
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 754
No 114
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=337.46 Aligned_cols=199 Identities=27% Similarity=0.427 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 589999999884 3469999999999999999999999999999999999998753245999999986531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------------cCCCccccccCCCCCHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------------LQLPGFFCQRKNGLPCGER 227 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------------l~l~~~~~~~~~~LSGGqr 227 (697)
.++.++|++|++.+++.+||.||+.+... +++....++.+.+||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 02468999999999998999999975421 1222333556689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|+||||||||+|||..++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~ 237 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSS 237 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999985 489999988886 467899999999999999999988
Q ss_pred hhh
Q 005423 307 LAC 309 (697)
Q Consensus 307 ~~~ 309 (697)
++.
T Consensus 238 ~~~ 240 (262)
T PRK09984 238 QQF 240 (262)
T ss_pred HHh
Confidence 763
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.5e-39 Score=328.33 Aligned_cols=190 Identities=26% Similarity=0.368 Sum_probs=161.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.+.++|++|++.+++.+||+||+.+... +++....++.++.|||||||||+|||+|+
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1469999999999988999999976421 12333345667899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++ +.+|++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999986 4899999888874 55 458999999999975
No 116
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-40 Score=322.21 Aligned_cols=198 Identities=25% Similarity=0.426 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (697)
.+..+||.++|+ +++++++||+.+++||+++|+|||||||||.+.++.|+.+|++ |+|.+||.++.. +
T Consensus 4 ~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHH
Confidence 588899998884 5689999999999999999999999999999999999999987 999999988643 1
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHcC---------------------CCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ---------------------LPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~---------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
+..+||+||++..|..+||+||+......+ +.+..+.+...||||||+|+.|||||+
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 246899999999999999999997543222 222233445789999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-| .-.|...+|||..++++|+++++|+++++.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDH-NVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDH-NVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccc-cHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999999999655 4568899999999999999999999999865
No 117
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.4e-39 Score=327.55 Aligned_cols=186 Identities=28% Similarity=0.372 Sum_probs=161.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+|+++|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.+++.+|+.||+.+... +++....++.+++||||||||++|||||+.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 13569999999999988999999976421 123333456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988889999988876 578889999999999974
No 118
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=336.21 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 478999999884 2469999999999999999999999999999999999998875 999999986432
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.++|++|+..+++.+|+.||+.+... +++....++.+..|||||||||+|||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 12469999999988888899999976310 1222233556689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999987799999988886 4788999999999999999999887653
No 119
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-39 Score=338.98 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 4899999999842 13469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCcc-ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERET-TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++ .++...||.||+.+... +++.....+.+..|||||||||+|||+|+.+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 34699999997 35667899999976421 2344445567789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 899999888875 555 599999999999999999887653
No 120
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.6e-39 Score=331.98 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (697)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS---GTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc---ceEEECCEecCCCCHH
Confidence 46899999984 246999999999999999999999999999999999995 5554 999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCCc-cccccCC-CCCHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLPG-FFCQRKN-GLPCGERRR 229 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~~-~~~~~~~-~LSGGqrqR 229 (697)
.+..++|++|++.+++.+|+.|++.+... ++++. ..++... +||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 12348999999999999999999865321 11221 1233444 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+... ||++++|++|++++.|++++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999988889999988887 467777 89999999999999999875
Q ss_pred hH
Q 005423 309 CL 310 (697)
Q Consensus 309 ~~ 310 (697)
+.
T Consensus 232 ~~ 233 (243)
T TIGR01978 232 AK 233 (243)
T ss_pred hc
Confidence 43
No 121
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-39 Score=337.12 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=170.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
+.++|+++.+.+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 679999999842 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCccEEEEcCcc--ccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVERET--TLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
..+.++|++|++ .++ ..||.||+.+... +++.+..++.+++||||||||++|||+|+
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 124699999996 344 4699999976421 23344455677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999987799999988876 57888999999999999999999988753
No 122
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.3e-39 Score=329.05 Aligned_cols=196 Identities=36% Similarity=0.568 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~---~~~~~~G~I~i~G~~~~~-- 179 (697)
.+.|+|+++.+++.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ +.. |+|.++|++...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~---G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS---GQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCc---eEEEECCEECChHH
Confidence 367999999986421 13679999999999999999999999999999999999998 654 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcCC-----------------------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQL-----------------------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l-----------------------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++.+||+||+.+...... ....++..+.|||||||||+|||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 24579999999999999999999987532211 1112234578999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998778999999998755788999999999999999865
No 123
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=337.65 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 11 ~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 11 TFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSKA 82 (265)
T ss_pred eEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHHH
Confidence 589999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|+..+++.+||.||+.+... +++.+..++.+++|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 12469999999888888999999976311 1222223456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999999999999999999999999999999864 89999988886 4788999999999999999999887653
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-39 Score=334.73 Aligned_cols=197 Identities=27% Similarity=0.372 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 378999999884 2469999999999999999999999999999999999998875 999999986532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh---
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV--- 237 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--- 237 (697)
..+.++|++|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 12468999999988788999999976421 12233335567899999999999999999
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 ---MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ---~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|++|||||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 5999999999999999999999999999998 6789999988876 5788899999999999999999887654
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=332.14 Aligned_cols=196 Identities=23% Similarity=0.386 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChHH
Confidence 488999999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH---------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA---------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++.++|++|++.+++ .||+||+.+.. .++++ +..++.+..||||||||++|||||+.+|++|
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1356999999998886 69999987532 12343 2345677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|+. .++.++||++++|++|+++..|+++++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999986 489999988876 4788899999999999999999988764
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-39 Score=330.28 Aligned_cols=187 Identities=29% Similarity=0.435 Sum_probs=157.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEE
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 187 (697)
++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 578888874 2469999999999999999999999999999999999998875 99999998653334579999
Q ss_pred cCccccC--CCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 188 ERETTLI--GSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 188 ~Q~~~l~--~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+|++.+. ..+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9998763 23799999976421 1122223456689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999987889999988876 4788899999999876 66554
No 127
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-39 Score=352.84 Aligned_cols=184 Identities=27% Similarity=0.370 Sum_probs=163.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEcCccccC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETTLI 194 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~l~ 194 (697)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++... ++.++|++|+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 58999999999999999999999999999999999999876 9999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005423 195 GSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 255 (697)
Q Consensus 195 ~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 255 (697)
+.+||+||+.+... +++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 99999999987532 23344456677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 256 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 256 ~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++..+.+.|+++++ .|+|||+++|+. .++.++||++++|++|+++..|+++++..
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999975 589999988875 57889999999999999999999887643
No 128
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-40 Score=367.15 Aligned_cols=199 Identities=24% Similarity=0.386 Sum_probs=172.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++|+||+|.|+.. ...++|+|+||+++|||++||+||||+||||+.++|..++.|++ |+|.+||.++..
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINHK 538 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCHH
Confidence 369999999999853 45689999999999999999999999999999999999999986 999999998754
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.||+|.|||.||.. ||+|||.|+.. .++|+.+ .++..+||||||||+||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 24689999999999965 99999988521 1234332 3455689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||++||+||||||.||+||+++...|-+.|.++.++ +|||++.|..+ ..+.+|+|+|+++|++++.|+-+|.++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999998854 89998677653 347899999999999999998888764
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-39 Score=337.29 Aligned_cols=199 Identities=28% Similarity=0.386 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|.+ .+.+|+|||+++++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...||.||+.+... +++....++.++.||||||||++|||||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~ 155 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAME 155 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246899999963 2335799999976432 1233345667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+.||++++|++|++++.|++++..+
T Consensus 156 p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999999999875 89999988886 47888999999999999999999988753
No 130
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-39 Score=326.77 Aligned_cols=185 Identities=29% Similarity=0.414 Sum_probs=157.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (697)
++|+++.+.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... ++
T Consensus 2 ~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHHh
Confidence 57888887421 1469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred cEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 183 SYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 183 ~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
.++|++|++. .++.+|++||+.+... +++....++.+..|||||||||+|||||+.+|++
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6899999974 3567899999976421 1233334567789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999987799999988876 57888999999999985
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-39 Score=337.81 Aligned_cols=196 Identities=25% Similarity=0.318 Sum_probs=168.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|++ .+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 678999998842 2459999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.+.++|++|++. .+...|+.||+.+... +++....++.++.|||||||||+|||||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999975 3556899999976432 1233334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 155 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 155 PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999888999999888875 56 569999999999999999988764
No 132
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=338.37 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 67899999884 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCccEEEEcCcccc-CCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETTL-IGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++.. +...|+.||+.+... +++.+..++.+..||||||||++|||+|+.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 12469999999752 334589999876421 123333455678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999987789999988876 5788899999999999999999988764
No 133
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-39 Score=333.19 Aligned_cols=198 Identities=21% Similarity=0.285 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|.. ..+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999988631 125999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ +||+||+.+.... ++ .+..++.+++|||||||||+
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 1346999999988884 8999999875321 11 11234556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988876 4778899999999999999999988764
No 134
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=333.50 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSE---M 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~---~ 179 (697)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 246999999999999999999999999999999999998873 013599999998753 1
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++.+||.||+.+.... ++. ...++.+.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 124699999999999999999999864321 111 112345688999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999975 68999988876 4788899999999999999999988764
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-39 Score=333.57 Aligned_cols=199 Identities=20% Similarity=0.312 Sum_probs=167.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3689999999884 2469999999999999999999999999999999999987510 124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ +|++||+.+.... ++ ....++....|||||||||+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 1346999999998887 8999999875311 11 11134556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999975 78999988876 4778899999999999999999988764
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.4e-39 Score=335.70 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEeccc----ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 378999999985310 113579999999999999999999999999999999999998875 999999987532
Q ss_pred -------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++ .+++.+||+||+.+.. .+++. ...++...+||||||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 124699999996 4667889999985432 12232 22345678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.++||++++|++|++++.|++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 89999988876 57788999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+..
T Consensus 238 ~~~ 240 (265)
T TIGR02769 238 LLS 240 (265)
T ss_pred HcC
Confidence 653
No 137
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-39 Score=332.17 Aligned_cols=199 Identities=21% Similarity=0.290 Sum_probs=166.6
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
+.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 110134999999987532
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCc----cccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++.. ..++.++.|||||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 1346999999998887 5999999875321 1111 12445689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999964 78999988876 4788899999999999999999887653
No 138
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=348.33 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=169.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
+.+ ||+++|.+ + .+ |+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 455 88888742 2 23 8999999999999999999999999999999998875 999999987421
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++.++|++|+..+++.+||+||+.+.. .+++.+..++.+++|||||||||+|||||+.+|++|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 1357999999999999999999998642 234555567788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999865 89999988876 57889999999999999999999988754
No 139
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=344.48 Aligned_cols=205 Identities=20% Similarity=0.180 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~~--- 180 (697)
.++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 2356999999999999999999999999999999999998742 12359999999875321
Q ss_pred ------CccEEEEcCccc--cCCCCCHHHHHHHHH-------------------------HcCCCc---cccccCCCCCH
Q 005423 181 ------YGSYGFVERETT--LIGSLTVREYLYYSA-------------------------LLQLPG---FFCQRKNGLPC 224 (697)
Q Consensus 181 ------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~-------------------------~l~l~~---~~~~~~~~LSG 224 (697)
.+.++||+|++. +.+.+||.+++.... .+++.+ ..++.+++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 236999999975 677889998885421 112321 13466789999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
||||||+|||||+.+|+||||||||+|||+.++.+++++|++++++ |.|||+++|+. ..+.++||+|++|++|++++.
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999874 89999977765 678899999999999999999
Q ss_pred eCchhhHH
Q 005423 304 GETLACLQ 311 (697)
Q Consensus 304 G~~~~~~~ 311 (697)
|+++++++
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99887753
No 140
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-39 Score=314.95 Aligned_cols=169 Identities=29% Similarity=0.432 Sum_probs=152.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYGK-----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEECC-----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 368899998842 369999999999999999999999999999999999998875 999999987532 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++..|+.||+. ||||||||++|||||+.+|++|+|||||+|||+.++..+.
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 135 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 57999999999998899999985 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.|++++++|.|+|+++|++ .++.+.||++++|++|++
T Consensus 136 ~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 136 ELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999987789999988876 478889999999999974
No 141
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-39 Score=376.37 Aligned_cols=199 Identities=23% Similarity=0.377 Sum_probs=172.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|++|.|.. ....+|+|+|++++|||.+||+|+||||||||+|+|+|+++|.. |+|.+||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 36999999999963 22379999999999999999999999999999999999999976 999999998542
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.+|||+||+.+|. .|++||+.++. ..++|..+ .+...+||||||||++|||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 3578999999999995 59999997642 12233322 3455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||+++|+||+||||||+||+.+++.|.+.|.++. .|+|+|+++|.++ ..+.||||+||++|++++.|+.++.++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999999987 4688888899874 5689999999999999999999998763
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-39 Score=334.54 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=171.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++++. |+|.++|++....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 3689999999985 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.+.++|++|++.+++..|++||+.+.. .+++.+..++.+..||||||||++||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 246999999999988899999997531 0122223456678999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999986 489999988876 4788999999999999999999987764
No 143
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-39 Score=315.14 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=168.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++.+|+++++. .+.+|++||++++|||++||+||||||||||||+|+|.+.|++ |++.+||.+.....
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 67899999985 4579999999999999999999999999999999999998876 99999998764321
Q ss_pred -ccEEEEcCccccCCCCCHHHHHHHHHHcC---------------------CCccccccCCCCCHHHHHHHHHHHHHhh-
Q 005423 182 -GSYGFVERETTLIGSLTVREYLYYSALLQ---------------------LPGFFCQRKNGLPCGERRRVRIARELVM- 238 (697)
Q Consensus 182 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~---------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~- 238 (697)
+.-+.++|+..+-...||.|.+.++..-. +.+...+....|||||||||.+||.|++
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 34688899987765679999998875322 1122234447899999999999999976
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 -----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 -----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++++|+||||||+||...+..++++.++++++|..|+++.|+. .....+||||++|++||++..|+++++++
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 4569999999999999999999999999999999999977765 57888999999999999999999999874
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=333.23 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 5899999999852 12459999999999999999999999999999999999998875 9999999875321
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++. +++..|+.+|+.+... +++.+..++.+++||||||||++|||||+.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 346999999974 6777899999876421 1233334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH---hhhh
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ---HFSN 315 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~---~f~~ 315 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|+++++.+ .+..
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 238 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTR 238 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHh
Confidence 9999999999999999999999999999864 899999999875 5654 99999999999999999887643 3333
Q ss_pred cCCCCC
Q 005423 316 AGFPCP 321 (697)
Q Consensus 316 ~g~~~p 321 (697)
.|.++|
T Consensus 239 ~~~~~~ 244 (269)
T PRK13648 239 IGLDLP 244 (269)
T ss_pred cCCCCC
Confidence 455544
No 145
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.6e-39 Score=320.71 Aligned_cols=188 Identities=24% Similarity=0.321 Sum_probs=161.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~--- 180 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+. +|.. |+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~---G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE---GEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCc---cEEEECCEECCcCCHH
Confidence 46889999884 246999999999999999999999999999999999994 5654 9999999875321
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+..++|++|++.+++..++++++. .....||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~------------~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 140 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR------------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh------------hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 234999999999999899998871 22358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecChHHHHh-ccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 258 LLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 258 ~~i~~~L~~l~~~g~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
..+.+.|++++++|+|||+++|++. .+.+ +||++++|++|++++.|+. ++.+.+.+
T Consensus 141 ~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~ 197 (200)
T cd03217 141 RLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEK 197 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcc
Confidence 9999999999877899999888874 6666 7999999999999999944 45555543
No 146
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.4e-39 Score=356.40 Aligned_cols=207 Identities=27% Similarity=0.327 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE----- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~----- 178 (697)
.++++||+++|... .....+++||||++++||++||+|+|||||||++++|.|++|+. ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68999999999754 23357999999999999999999999999999999999999986 345799999998531
Q ss_pred ----CCCccEEEEcCcc--ccCCCCCHHHHHHHH--------------------HHcCCCcccc--ccCCCCCHHHHHHH
Q 005423 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYS--------------------ALLQLPGFFC--QRKNGLPCGERRRV 230 (697)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~e~l~~~--------------------~~l~l~~~~~--~~~~~LSGGqrqRv 230 (697)
...+.++|++|++ .+-|..||.+-+.-. ...++++... +++++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 1225799999996 455667776655321 1345655444 48999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.||+||+.+|++||+||||++||+.++.+|+++|+++. +.|+++|+++|++ ..+.++||||+||.+|++|+.|+++++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998 5689999977765 689999999999999999999999999
Q ss_pred HHhh
Q 005423 310 LQHF 313 (697)
Q Consensus 310 ~~~f 313 (697)
++.+
T Consensus 243 ~~~p 246 (539)
T COG1123 243 LSNP 246 (539)
T ss_pred Hhcc
Confidence 8654
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-39 Score=338.93 Aligned_cols=201 Identities=19% Similarity=0.319 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+++......+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999985321112359999999999999999999999999999999999998875 999999986421
Q ss_pred -----CCccEEEEcCccc--cCCCCCHHHHHHHHHH-------------------cCCC-ccccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSAL-------------------LQLP-GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~-------------------l~l~-~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++. +++ .||+||+.+... ++++ +..++....|||||||||+|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 1346999999963 443 599999976431 1232 23456678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999986 489999988876 4788999999999999999999988764
No 148
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8.8e-39 Score=332.91 Aligned_cols=196 Identities=29% Similarity=0.428 Sum_probs=168.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.++|++|++.+++.+||.||+.+... +++.+..++.+..||||||||++|||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2468999999877778899999976310 11222234556899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 99999999999999999999999999999987789999988886 4788999999999999999999887653
No 149
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-39 Score=324.03 Aligned_cols=188 Identities=30% Similarity=0.376 Sum_probs=160.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
+.++|+++.+.+ +. .|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+... .++
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 368899998842 12 39999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll 150 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999998999999976421 12222334566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999985 489999988876 5788899999999999998654
No 150
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.3e-39 Score=348.39 Aligned_cols=185 Identities=26% Similarity=0.356 Sum_probs=162.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CCccEEEEc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEM---------PYGSYGFVE 188 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~~~---------~~~~~~yv~ 188 (697)
...+|+|+||++++||+++|+|+||||||||+|+|+|+++|+. |+|.++|++ ... .++.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999999999999999999876 999999962 211 124699999
Q ss_pred CccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 189 RETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 189 Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
|+..+++.+||+||+.++.. +++.+..++.+.+|||||||||+|||||+.+|+||||||||
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999999987532 23333445677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 250 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+.++.++.+.|++++++ |+|||+++|+. .++.++||++++|++|+++..|+++++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999864 89999988875 5788999999999999999999998875
No 151
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=329.66 Aligned_cols=199 Identities=27% Similarity=0.340 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999884 246999999999999999999999999999999999998742 1135999999987532
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++.+||.||+.+.... ++. ...++.+.+|||||||||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 135699999999888889999999764321 111 12345568999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999965 78999988876 4778899999999999999999988764
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=326.32 Aligned_cols=195 Identities=25% Similarity=0.327 Sum_probs=167.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++||++.|.. + ..|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++....++.++.||||||||++|||+|+.+|++|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999998999999976321 12222345567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|+++++ .|+|+|+++|++ .++.++||++++|++|++++.|+.+++.+
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999975 489999988886 47788999999999999999998876643
No 153
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=335.75 Aligned_cols=202 Identities=20% Similarity=0.299 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+++. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|....+|+|.++|.+....
T Consensus 5 ~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 58999999998521 24699999999999999999999999999999999999987642348999999876421
Q ss_pred -CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 -YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++. .++..||.||+.+... +++.+..++.++.||||||||++|||||+.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 246999999974 5667899999976421 2333445667799999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+.. ++ ..||++++|++|++++.|+++++.+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 899999998875 55 5799999999999999999988754
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-38 Score=325.81 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=171.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
+.++|+++.+. .+.+++|+|+++++||+++|+|+||||||||+++|+|.++|.. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36889999884 2469999999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.+..||||||||++|||+|+.+|+++
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999988999999976421 23444455677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999999864 89999988886 4688999999999999999999876654
No 155
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=335.01 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccc-cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
.++++|+++.|++... ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13569999999999999999999999999999999999999875 999999987532
Q ss_pred --CCccEEEEcCccc--cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETT--LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++. ++ ..||.||+.+... +++....++.+++|||||||||+|||+|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1356999999974 44 4689999977532 2333445567799999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.. ||++++|++|++++.|+++++..
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999976 4999999888875 5555 99999999999999999988754
No 156
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=330.48 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEEecc-------------------cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 005423 104 ASVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~ 164 (697)
..++++|+.+-+..+ +.+...-++|+|++++.||+..|||-||||||||+|+|.++++|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 357889998877432 0122346899999999999999999999999999999999999986
Q ss_pred CceeEEEECCEeCC---------CCCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCcccc
Q 005423 165 RMYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFC 216 (697)
Q Consensus 165 ~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~ 216 (697)
|+|+++|+++. ..++.++.|+|...|+|+.||.||..|+. ..+|.++.+
T Consensus 83 ---G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 ---GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred ---ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 99999998752 13467999999999999999999998863 235666778
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEE
Q 005423 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
+++++|||||||||.|||||+.+|+||++|||+|+|||--+.++.+.|.+|++ .++||++++|+ .+|++++.|||.+|
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD-LdEAlriG~rIaim 238 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIM 238 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC-HHHHHhccceEEEe
Confidence 89999999999999999999999999999999999999999999999999984 58999996665 57999999999999
Q ss_pred eCCeEEEEeCchhhHH
Q 005423 296 SNGNTLFFGETLACLQ 311 (697)
Q Consensus 296 ~~G~iv~~G~~~~~~~ 311 (697)
++|+||..|+++|++.
T Consensus 239 kdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 239 KDGEIVQVGTPEEILL 254 (386)
T ss_pred cCCeEEEeCCHHHHHc
Confidence 9999999999999874
No 157
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.6e-38 Score=321.95 Aligned_cols=189 Identities=25% Similarity=0.369 Sum_probs=163.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. ..++|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++... .++
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 36889999874 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.++.||||||||++|||+|+.+|+++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 150 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPIL 150 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999988999999975421 12222334566899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 151 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 151 LLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999864 89999988876 47788999999999999998875
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=332.84 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=169.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 35899999998842 13469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.++|++|++. .++.+||+||+.+... +++.+..++.+..||||||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1356999999973 5667899999976421 123333456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999866 589999899875 45 479999999999999999987764
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-38 Score=332.11 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEeccc----ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||+++|..+. ...+++|+|+|+++++||+++|+|||||||||||++|+|+++|.+ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 489999999985211 112469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCccEEEEcCccc--cCCCCCHHHHHHHHHH--------------------cCC-CccccccCCCCCHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSAL--------------------LQL-PGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~--------------------l~l-~~~~~~~~~~LSGGqrqRv~I 232 (697)
..+.++|++|++. +++.+|+.+++.+... +++ +...++.+.+|||||||||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 1246999999874 5677899988865322 122 122344568999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999864 89999988876 5788899999999999999999887654
No 160
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.8e-38 Score=323.35 Aligned_cols=193 Identities=29% Similarity=0.286 Sum_probs=163.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+..++ ....+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 589999999885311 11359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++|++|++.+++.+||.||+.+... +++.+..++.+..||||||||++|||+|
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 2469999999999998999999976421 1233334456789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999764 899999888875 55 45999999999998753
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-38 Score=325.18 Aligned_cols=195 Identities=28% Similarity=0.443 Sum_probs=169.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .++
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 36789998874 1 38999999999999999999999999999999999999876 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++.+|+.||+.+... +++.+..++.++.|||||||||+|||||+.+|+++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 151 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL 151 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999989999999976431 22333345667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 152 llDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999764 89999988886 4788899999999999999999877654
No 162
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-38 Score=345.32 Aligned_cols=191 Identities=28% Similarity=0.409 Sum_probs=165.8
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (697)
||++.|.+ +. + |+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~~-----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGD-----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECC-----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 67777731 23 4 9999999999999999999999999999999999875 999999987521 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|||||+.+|++|
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3569999999999999999999987532 23344456677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|+++..|+++++..
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999865 89999988876 57888999999999999999999888754
No 163
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.5e-38 Score=325.83 Aligned_cols=196 Identities=31% Similarity=0.437 Sum_probs=170.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|++++.. |+|.++|.+... .++
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++|++|++.+++..|+.||+.+.... ++....++....|||||+||++|||+|+.+|+++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll 152 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVL 152 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 699999999999889999999765321 2222234556889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 153 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999875 89999988887 4778999999999999999999987764
No 164
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=330.04 Aligned_cols=199 Identities=23% Similarity=0.326 Sum_probs=167.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3589999999984 2369999999999999999999999999999999999986 211134999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||+
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 1356999999998887 7999999764321 111 113455689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999964 78999988876 4778899999999999999999988764
No 165
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-39 Score=353.37 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=170.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
+..+..+|+++.+++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+..+
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 445667799999863 3489999999999999999999999999999999999999876 999999987543
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------c----CCCccccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------L----QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l----~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.+++++||+|++.+++. |++||+.++.. . ++.....+..++|||||+|||++||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 35789999999999975 99999977421 1 1112233455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+++++++||||++||.++++.|++.|.+++++ +|+++++|++ ....-+|+|++|++|++++.|..+++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999999999999999999965 8888888886 3556799999999999999999988754
No 166
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=326.78 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 368899999984 2469999999999999999999999999999999999975311134999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH---------------------cCCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL---------------------LQLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------l~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.+++ .||+||+.+... +++.. ..++....|||||||||+|||
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 1346999999998887 699999976421 11211 123456789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|+. .++.+.||++++|++|++++.|++++..
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999975 88999988876 5788899999999999999999988754
No 167
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=326.49 Aligned_cols=199 Identities=23% Similarity=0.325 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 2469999999999999999999999999999999999985 321134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++.+|++||+.+.... ++. +..++....||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 135699999999999989999999763211 111 1123456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 159 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999976 58999988876 4788999999999999999999987764
No 168
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=329.13 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 3589999999884 2469999999999999999999999999999999999986 321135999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++. ||+||+.+.... ++. +..++...+||||||||+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 13469999999988875 999999764321 111 112345678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999975 78999988886 4788899999999999999999988764
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 3
No 169
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=327.99 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 588999999984 2469999999999999999999999999999999999987631 125999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-C-------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-Q-------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~-------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++.+|+.||+.+.... + + ....++..+.||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 134699999999999989999999764311 0 0 11224456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999974 68999988876 47888999999999999999999887643
No 170
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.8e-37 Score=361.79 Aligned_cols=199 Identities=26% Similarity=0.432 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||.|+|+.+ ...++|+|+|+.+++|+++||+|||||||||++++|.+++.|+. |+|.+||.+++.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNLK 423 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcchH
Confidence 469999999999853 35689999999999999999999999999999999999999986 999999988643
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.+.++|.|.|+|.+|. .|++||+.|+. ...+|... .++..+||||||||+||||
T Consensus 424 ~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 2468999999999985 69999998853 11233322 2344569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..|.+.|.+.. +|+|.|++.|..+ .+.. +|+|++|++|+||+.|+.+|++.
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998876 5667777688764 6655 99999999999999999999875
No 171
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-38 Score=312.64 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=152.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+. .+.+++|+|+++++||+++|+||||||||||+|+|+|++++++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
.++.++|++|++.+++.+|++||+.+. ||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~---------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~ 137 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG---------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec---------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 135699999999988889999998653 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 259 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 259 ~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999877 89999988876 57778999999999885
No 172
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.5e-38 Score=312.94 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+ +|+++|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 48899998864 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 255 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 255 (697)
++.++|++|+. .+++.+|++||+.+... ||||||||++|||||+.+|++|||||||+|||+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 34699999984 57888999999987532 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 256 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 256 ~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999987789999988876 578899999999999974
No 173
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=327.10 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 4 KMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred EEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 589999999884 246999999999999999999999999999999999998641 0135999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-C-------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-Q-------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~-------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .|++||+.+.... + + ....++...+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 1346999999998887 8999999865321 1 1 01124556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999976 58999988876 5788999999999999999999988764
No 174
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=326.22 Aligned_cols=198 Identities=20% Similarity=0.290 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~-- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 588999999884 24699999999999999999999999999999999997 3442 124999999987532
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCc----cccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .|+.||+.+... +++.. ..++.+..||||||||+
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 1346999999998887 599999976421 11211 12455679999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999996 478999988876 4788999999999999999999998875
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 234 ~ 234 (250)
T PRK14245 234 T 234 (250)
T ss_pred c
Confidence 3
No 175
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.3e-38 Score=325.83 Aligned_cols=196 Identities=24% Similarity=0.352 Sum_probs=164.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 368899998842 12469999999999999999999999999999999999998875 999999986432 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-----------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-----------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-----------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||.||+.+... .++ ....++.+.+|||||||||+|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 356999999988875 699999975210 011 1112345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999974 899999899875 55 4699999999999999999887654
No 176
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=329.60 Aligned_cols=199 Identities=21% Similarity=0.308 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++..
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3699999999984 246999999999999999999999999999999999998741 0124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCc----cccccCCCCCHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPG----FFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~----~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++. ||.||+.+.... ++.. ..++.+.+||||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 13469999999988875 999999865321 1211 1234568899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|+++..|+++++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 68999988876 578889999999999999999988776
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 4
No 177
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=326.51 Aligned_cols=198 Identities=26% Similarity=0.360 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 2469999999999999999999999999999999999853 421124999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.+++|||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 1346999999998887 7999999864211 010 1124556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 68999988876 4788899999999999999999988764
No 178
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.9e-38 Score=328.44 Aligned_cols=197 Identities=24% Similarity=0.292 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. |+|.++|++ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999998875 999999986 432
Q ss_pred C---------CccEEEEcCccc--cCCCCCHHHHHHHHH--------------------HcCCCc-cccccCCCCCHHHH
Q 005423 180 P---------YGSYGFVERETT--LIGSLTVREYLYYSA--------------------LLQLPG-FFCQRKNGLPCGER 227 (697)
Q Consensus 180 ~---------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~--------------------~l~l~~-~~~~~~~~LSGGqr 227 (697)
. ++.++|++|++. +.+.+|+.||+.+.. .+++.. ..++.+..||||||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 1 235999999973 566778888875321 123322 34567789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+. ..+.+.||++++|++|++++.|++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 89999988876 577789999999999999999998
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 237 ~~~~ 240 (258)
T PRK11701 237 DQVL 240 (258)
T ss_pred HHHh
Confidence 8764
No 179
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-38 Score=326.10 Aligned_cols=180 Identities=30% Similarity=0.398 Sum_probs=155.3
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999998875 99999998764332345899999999998999999976
Q ss_pred HHH---------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005423 206 SAL---------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264 (697)
Q Consensus 206 ~~~---------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L 264 (697)
... +++.+..++.+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 421 11222234566899999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 265 KKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 265 ~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
++++++ |+|||+++|++ .++.++||++++|++|+++..|+..++
T Consensus 158 ~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCceec
Confidence 999864 89999988876 478899999999999999998865543
No 180
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=328.19 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|++...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 489999999984 236999999999999999999999999999999999998641 0125999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++.+||+||+.+.... ++. ...++...+|||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 124699999999999989999999764321 111 1224456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe------CCeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~------~G~iv~~G~ 305 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999964 68999988876 47888999999997 799999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 237 ~~~~~~ 242 (258)
T PRK14241 237 TEKIFS 242 (258)
T ss_pred HHHHHh
Confidence 887643
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=325.81 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=166.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999984 23699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------CC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------LP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .|++||+.+..... +. ...++...+||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC 156 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence 1346999999998887 89999998753211 10 1124556889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+. ..+.++||++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988875 5788899999999999999999887754
No 182
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=332.02 Aligned_cols=199 Identities=25% Similarity=0.346 Sum_probs=167.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMP 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~ 180 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+....
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 68999999884 3469999999999999999999999999999999999998750 0149999999875321
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
.+.++|++|++.++..+||+||+.+... +++....++....|||||||||+|
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 2358999999876666899999976421 112222345668999999999999
Q ss_pred HHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 233 ARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 233 A~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEE
Confidence 99999 599999999999999999999999999999875 89999988886 47888999999999999999
Q ss_pred EeCchhhH
Q 005423 303 FGETLACL 310 (697)
Q Consensus 303 ~G~~~~~~ 310 (697)
.|+++++.
T Consensus 236 ~g~~~~~~ 243 (272)
T PRK13547 236 HGAPADVL 243 (272)
T ss_pred ecCHHHHc
Confidence 99987763
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=330.83 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999998531 12359999999999999999999999999999999999999875 999999987542
Q ss_pred CCccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 PYGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++. .+...||.||+.+... +++.+..++.+..||||||||++|||||+.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 1356999999974 5667899999976432 1222334556789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+.. ++. .||++++|++|+++..|+++++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 999999888864 554 69999999999999999988775
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=331.16 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3699999999984 2469999999999999999999999999999999999986310 124999999987521
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CC----CccccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QL----PGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l----~~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||+||+.+.... ++ ....++...+|||||||||+|
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 1246999999998887 4999999764321 11 112345568899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-----------CeEE
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-----------GNTL 301 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-----------G~iv 301 (697)
||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||+++|++ .++.++||++++|++ |+++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEE
Confidence 9999999999999999999999999999999999964 68999988876 578899999999996 6789
Q ss_pred EEeCchhhHH
Q 005423 302 FFGETLACLQ 311 (697)
Q Consensus 302 ~~G~~~~~~~ 311 (697)
+.|+++++.+
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 9999988754
No 185
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-38 Score=328.76 Aligned_cols=198 Identities=23% Similarity=0.317 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999864 110124999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |+.||+.+.... ++. ...++....||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 13469999999988875 999999764211 111 1124566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 68999988886 4788899999999999999999987764
No 186
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-38 Score=325.66 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 2469999999999999999999999999999999999988751 124999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |++||+.+.... ++. ...++...+|||||||||+
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 13569999999998875 999999875321 111 1124566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.++|++++ ++.|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999995 588999988876 5788899999999999999999987764
No 187
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.8e-39 Score=302.33 Aligned_cols=192 Identities=29% Similarity=0.323 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++++++++... .....||++|++.+++||.+||+|||||||||||-+|+|+..|++ |+|.+.|++...
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 57888998887543 245679999999999999999999999999999999999998876 999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
..+.+|+|+|...++|++|..||+..... +++.+.+..+|++|||||+|||+||||+
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHh
Confidence 23679999999999999999999976432 3455566778899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
+..|+|||.||||-+||..+..+|.++|-.+. +.|+|.++++|+| .+..-|||.+-|.+|+++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999998 4699999999987 4667899999999999874
No 188
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.5e-38 Score=357.57 Aligned_cols=197 Identities=22% Similarity=0.335 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|++....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH---------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA---------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
...++|++|++.+++.+||+||+.+.. .+++....++.+.+|||||||||+|||||+.+|++|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 235999999999999999999997631 234444556778999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999988899999988875 5788899999999999999999987653
No 189
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-38 Score=324.50 Aligned_cols=199 Identities=22% Similarity=0.364 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 488999999884 24699999999999999999999999999999999999874 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 1356999999998887 8999999864321 111 0124456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ ..+.++||++++|++|+++..|+++++.+
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999975 68999988876 46888999999999999999999887643
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.2e-38 Score=308.90 Aligned_cols=168 Identities=28% Similarity=0.446 Sum_probs=149.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+++. .+.+++++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 3688999988531 2469999999999999999999999999999999999999875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++ .||+||+ ||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l 135 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH
Confidence 356999999998887 4999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 261 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 261 ~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+.|++++++|+|+|+++|++. .+ +.||++++|++|++
T Consensus 136 ~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 136 NQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999878999999888874 55 58999999999974
No 191
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-37 Score=324.25 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (697)
.++++|+++.+ + +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999987 2 369999999999999999999999999999999999998710 0249999999875321
Q ss_pred CccEEEEcCccc--cCCCCCHHHHHHHHH-----------------HcCCCc---cccccCCCCCHHHHHHHHHHHHHhh
Q 005423 181 YGSYGFVERETT--LIGSLTVREYLYYSA-----------------LLQLPG---FFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~e~l~~~~-----------------~l~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.+.++|++|++. +.+..|+.+++.+.. .+++.. ..++...+|||||||||+|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 246999999974 445678888765421 122332 2355678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999764 89999988876 4677899999999999999999988764
No 192
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4e-38 Score=364.91 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+.+ .+++|+|+|++++|||.+||+||||||||||+++|+|++ |.. |+|.+||.+...
T Consensus 349 ~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECCEecccCCHHH
Confidence 5999999986642 347999999999999999999999999999999999999 654 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|.. |++||+.++.. .++|+.. .+....||||||||++||||
T Consensus 421 lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHhheEEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 24679999999999964 99999987520 1233322 23456799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999999999999999986 5789999899874 456799999999999999999887754
No 193
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=323.73 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999865 321135999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------C----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------L----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+..... + ....++.+.+||||||||++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 1356999999998887 69999998643210 1 11123456899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.+.||++++|++|+++..|++.+..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999976 47999988876 5788899999999999999999888764
No 194
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-38 Score=324.83 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.-+++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 357899999884 3469999999999999999999999999999999999975 210134999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------CCCc----cccccCCCCCHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------QLPG----FFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------~l~~----~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++. ||.||+.+.... ++.+ ..++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 13469999999988875 999999765211 1111 12345678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999996 489999988886 4788899999999999999999887654
No 195
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=324.96 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 478999999884 2469999999999999999999999999999999999987530 124999999987531
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||.||+.+.... ++. +..++...+|||||||||+|
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 1346999999999887 7999999865321 111 11234557899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999976 58999988886 5788999999999999999999887653
No 196
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.9e-38 Score=323.58 Aligned_cols=179 Identities=28% Similarity=0.388 Sum_probs=153.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCccEEEEc-CccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 196 (697)
.+++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++... .++.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4579999999999999999999999999999999999998875 999999986422 234689997 55678888
Q ss_pred CCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 197 LTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+|++||+.+.... ++.+..++....||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 9999998764321 222233456688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 258 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 258 ~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
..+.+.|++++++ ++|||+++|++ .++.++||++++|++|++++.|
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999864 78999988886 4788899999999999998765
No 197
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=326.18 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3689999999984 346999999999999999999999999999999999998641 1134999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.+++||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 1346999999998887 5999999874311 111 123455689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999964 789999888864 788999999999999999999988764
No 198
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.9e-38 Score=324.27 Aligned_cols=198 Identities=23% Similarity=0.357 Sum_probs=165.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+....
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 3688999988531 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-----------CccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-----------PGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-----------~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... .++ .....+.++.|||||||||+|||+|
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 246999999998876 699999975310 011 1112345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++.+.
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999999999999997 7899999888864 554 8999999999999999988776543
No 199
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-38 Score=317.81 Aligned_cols=183 Identities=29% Similarity=0.421 Sum_probs=157.1
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (697)
||+++|.+ +.+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 78888742 234 99999999 9999999999999999999999998875 999999986421 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
++.++|++|++.+++.+|++||+.+... +++....++.+.+||||||||++|||+|+.+|++|
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3469999999999988999999976421 12333345667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999865 89999988876 4778899999999999998765
No 200
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-38 Score=322.60 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=165.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 3688999988531 2369999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------c-----------CCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------L-----------QLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-----------~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... . ++....++.+..||||||||++|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 346999999998886 699999975311 0 111123345689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||++++|++|++++.|+++++.+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999999999999974 889999888874 5654 99999999999999998877654
No 201
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=329.71 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=166.8
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~- 179 (697)
...++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999984 2369999999999999999999999999999999999854 200124999999987421
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++. ||.||+.+.... ++ .+..++.+..||||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 13469999999988875 999999875321 11 112245568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988876 477889999999999999999998876
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
.
T Consensus 269 ~ 269 (286)
T PRK14275 269 F 269 (286)
T ss_pred H
Confidence 4
No 202
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.7e-38 Score=309.87 Aligned_cols=174 Identities=23% Similarity=0.394 Sum_probs=153.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.++++ .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .+
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4688999988531 1369999999999999999999999999999999999998875 999999986421 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++|++.+++ .|++||+ ...||||||||++|||||+.+|++|||||||+|||+.++..++
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~ 138 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 56999999998886 6999998 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.|++++ ++.|||+++|++. ++ ..||++++|++|++++.|
T Consensus 139 ~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 139 SLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999996 5889999888875 55 469999999999998754
No 203
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=321.72 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=164.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+.+ .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|.. |+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999998842 2359999999999999999999999999999999999998875 999999986532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------cCCC-----------ccccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------LQLP-----------GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l~-----------~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++. ||+||+.+... .++. ...++...+|||||||||+|||+
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 13469999999988875 99999975311 1111 11223458999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999996 5899999999874 554 599999999999999988776543
No 204
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7e-38 Score=356.16 Aligned_cols=196 Identities=21% Similarity=0.358 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 489999999984 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 2469999999999999999999976421 122333345668999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999988899999988876 578899999999999999999988765
No 205
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=316.43 Aligned_cols=200 Identities=26% Similarity=0.431 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~ 183 (697)
.+++++|++++ +.+.+++|+||.++||++++++|+|||||||.+|+|.|+++|+. |+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 47899999988 45689999999999999999999999999999999999999976 999999988643 3468
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHHcC-------------------CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~l~-------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
|||.|.+..|++.+||.|.|.|.+.++ +.+...++..+||.|.+|++.+-.+++++|+++|
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE
Confidence 999999999999999999999876542 3344556678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
||||+|||||.+...+-+.+.+++++|.|||+++|.. ..+.++||++++|++|+.|.+|+.+++..-|
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999999999999999999999988875 6899999999999999999999999987644
No 206
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-37 Score=321.74 Aligned_cols=196 Identities=20% Similarity=0.290 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|||+++++||++||+|+||||||||+++|+|+ ++|.. |+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE---GDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCC---ceEEECCEEcccCCh
Confidence 589999999884 23699999999999999999999999999999999998 45554 999999987532
Q ss_pred -C-Cc-cEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCC-ccccccCC-CCCHHHHH
Q 005423 180 -P-YG-SYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLP-GFFCQRKN-GLPCGERR 228 (697)
Q Consensus 180 -~-~~-~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~-~~~~~~~~-~LSGGqrq 228 (697)
. .+ .++|++|++.+++.+|+.+++.+... ++++ ...++.+. +|||||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 1 12 47899999999998999999865321 1122 12234455 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++.|+++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999999999999877999999888864 56565 8999999999999999887
Q ss_pred hh
Q 005423 308 AC 309 (697)
Q Consensus 308 ~~ 309 (697)
.+
T Consensus 238 ~~ 239 (252)
T CHL00131 238 LA 239 (252)
T ss_pred hh
Confidence 43
No 207
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-38 Score=356.93 Aligned_cols=197 Identities=20% Similarity=0.347 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCCccccccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++.+++|||||||||+|
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 2469999999999999999999975321 122333455678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999998899999987765 5788899999999999999999987753
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=326.55 Aligned_cols=198 Identities=20% Similarity=0.306 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ +....+|+|.++|++...
T Consensus 24 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 589999999884 2469999999999999999999999999999999999986 211134999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc-CC-----------------------CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL-QL-----------------------PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-~l-----------------------~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||.||+.+.... +. ....++.+.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 1356999999998887 4999999864321 11 01123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999976 68999988876 5788899999999999999999987763
No 209
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=334.58 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..++++|+++.|.. ..+.+|+|+|+++++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 36999999999853 2346999999999999999999999999999999999998631 0124999999998631
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv 230 (697)
.++.++||+|++.+++ .|++||+.|.... .+. ...+++...|||||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 2457999999999885 7999999865321 111 123456688999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|+++|+. ..+.++||||++|++|++++.|++++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999976 68999988886 5778889999999999999999999876
Q ss_pred H
Q 005423 311 Q 311 (697)
Q Consensus 311 ~ 311 (697)
+
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 3
No 210
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-38 Score=342.82 Aligned_cols=197 Identities=25% Similarity=0.382 Sum_probs=170.5
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
+..++|+||++.|.. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. . +|+|++||+++..
T Consensus 349 ~~~I~F~dV~f~y~~----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeCC----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 446999999999952 3469999999999999999999999999999999999987 3 3999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcc----ccccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGF----FCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+||||||..||.+ ||.+|+.|+. . .++|+. ..++...|||||||||+||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 35679999999999965 9999998752 1 233433 3345578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||++.+|+|+++|||||+||..+..++++.+.+ ...++|+|++.|.. ....-||+|++|++|++.+.|+.++++.
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999999 44689999988875 4567899999999999999999999875
No 211
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=325.79 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 589999999984 2369999999999999999999999999999999999987410 134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |++||+.+.... ++. ...++...+|||||||||+
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 13579999999988875 999999764311 111 1123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.||++++|++|++++.|++++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999986 68999988886 4788899999999999999999887754
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=322.54 Aligned_cols=198 Identities=22% Similarity=0.314 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 489999999984 2469999999999999999999999999999999999986 211134999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++...+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 1346999999998886 7999999764211 111 1124556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+.+++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 68999988876 4788899999999999999999987764
No 213
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-37 Score=322.53 Aligned_cols=197 Identities=23% Similarity=0.283 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 489999999984 2368999999999999999999999999999999999998875 999999875 321
Q ss_pred -C--------CccEEEEcCccc--cCCCCCHHHHHHHH--------------------HHcCCC-ccccccCCCCCHHHH
Q 005423 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYS--------------------ALLQLP-GFFCQRKNGLPCGER 227 (697)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~e~l~~~--------------------~~l~l~-~~~~~~~~~LSGGqr 227 (697)
. .+.++|++|++. +.+..|+.||+.+. ..+++. ...++..+.||||||
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1 235899999974 44567888887431 112332 234566789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 489999988875 578889999999999999999988
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 234 ~~~~ 237 (253)
T TIGR02323 234 DQVL 237 (253)
T ss_pred HHHh
Confidence 7664
No 214
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=327.45 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=168.1
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (697)
...+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34699999999984 246999999999999999999999999999999999997531 1135999999987521
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||.||+.+.... ++ .+..++.+.+|||||||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 13569999999988874 999999764211 11 11234566889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe---------CCeEEE
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNTLF 302 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~---------~G~iv~ 302 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999975 68999988886 57889999999998 899999
Q ss_pred EeCchhhH
Q 005423 303 FGETLACL 310 (697)
Q Consensus 303 ~G~~~~~~ 310 (697)
.|+++++.
T Consensus 250 ~g~~~~~~ 257 (274)
T PRK14265 250 FSPTEQMF 257 (274)
T ss_pred eCCHHHHH
Confidence 99998875
No 215
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.3e-38 Score=369.30 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|++ ..+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHHH
Confidence 6999999999953 23579999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||+|++.+|+ .|++||+.++.. . ++|... .+....||||||||++|||||
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 2467999999999996 499999976411 1 122222 234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+|||||||||+||+.++.++++.|+++ ++|+|+++|+++ ..+.||+|++|++|++++.|+.+++++
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999886 579999899874 456799999999999999999888754
No 216
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=326.98 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=166.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~- 179 (697)
...++++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 34689999999984 2469999999999999999999999999999999999986310 124999999987521
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHHHH------------------cCCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYSAL------------------LQLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------------l~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||.||+.+... +++. ...++++.+|||||||||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred ccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 13569999999988875 99999976421 1221 1234567899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE-EEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~-vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.++||+++ +|++|++++.|+++++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999864 7899988876 57888999975 57999999999887753
No 217
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-38 Score=356.24 Aligned_cols=198 Identities=22% Similarity=0.364 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|++....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 1249999999875321
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++||+|++.+++.+||+||+.+... +++....++.+++|||||||||+|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 2469999999999999999999976421 1222233456689999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999988899999988875 578889999999999999999998765
No 218
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=325.74 Aligned_cols=199 Identities=21% Similarity=0.270 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (697)
.+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 21 ~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 21 AMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 689999999984 346999999999999999999999999999999999998752 0135999999987532
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCc----cccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPG----FFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~----~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++ .||+||+.+... +++.. ..++.+..||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 1356999999998887 799999976421 11211 1234567899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999986 48999988876 57889999999999999999999887643
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=323.94 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~--~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999884 24699999999999999999999999999999999999875311 35999999987531
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CC----CccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QL----PGFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l----~~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++ .||+||+.+.... ++ ....++.+.+|||||||||+
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 1246999999998887 8999999764211 11 11234556899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-----CCeEEEEeCc
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFGET 306 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-----~G~iv~~G~~ 306 (697)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|++
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999975 58999988886 57889999999998 5999999999
Q ss_pred hhhH
Q 005423 307 LACL 310 (697)
Q Consensus 307 ~~~~ 310 (697)
+++.
T Consensus 239 ~~~~ 242 (259)
T PRK14260 239 TQIF 242 (259)
T ss_pred HHHh
Confidence 8864
No 220
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-39 Score=304.56 Aligned_cols=198 Identities=26% Similarity=0.291 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+.+.| +...+|++||+..+.|+++.|+|.|||||||+||||.=+..|.. |.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCCC
Confidence 57888888877 45679999999999999999999999999999999999988876 999999975311
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHH--------------------HHcCCCccccccCCCCCHHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYS--------------------ALLQLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------------~~l~l~~~~~~~~~~LSGGq 226 (697)
.+.+.++|+|+..|..++||.||+.-+ +..++.+..+.+|..|||||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence 123479999999999999999998432 23455555667889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.++++|.. ..+.+...+|+.|++|.|-+.|+|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999999999999988875 578889999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
++++.
T Consensus 237 ~qvf~ 241 (256)
T COG4598 237 EQVFG 241 (256)
T ss_pred HHHhc
Confidence 98864
No 221
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=321.75 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 589999999884 34699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHcC--------------------CC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQ--------------------LP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~--------------------l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. ||+||+.+..... +. ...++....||||||||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 13469999999988874 9999998753211 10 1123456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999976 58999988876 4678899999999999999999987764
No 222
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=323.07 Aligned_cols=200 Identities=22% Similarity=0.325 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++++ ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999984 2369999999999999999999999999999999999998741 135999999987421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|+..+++ .|+.||+.+.... ++. ...++....||||||||++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 1346999999988887 8999999764211 111 1123455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeC-----CeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~-----G~iv~~G~ 305 (697)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++ |++++.|+
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 99999999999999999999999999999999999975 589999988876 578899999999999 99999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 240 ~~~~~~ 245 (261)
T PRK14258 240 TKKIFN 245 (261)
T ss_pred HHHHHh
Confidence 988754
No 223
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.2e-37 Score=324.61 Aligned_cols=203 Identities=24% Similarity=0.269 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecc----cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++||++.+... +...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013579999999999999999999999999999999999998865 999999986532
Q ss_pred -------CCccEEEEcCcc--ccCCCCCHHHHHHHHH--------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSA--------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~--------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++ .+.+..|+.|++.+.. .+++. ...++....||||||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHH
Confidence 134699999997 4667789999975421 11232 23456778999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999999999999999999999999999999999999864 89999988876 57888999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+.+
T Consensus 239 ~~~ 241 (268)
T PRK10419 239 KLT 241 (268)
T ss_pred ccC
Confidence 543
No 224
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=299.86 Aligned_cols=201 Identities=28% Similarity=0.359 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+..++++.+|+++ ...+|+|||+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++.-+-..-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778889998653 2569999999999999999999999999999999999999976 99999999988877777
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 185 GFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
|.|+|++.++|.+||.||+.|+..+ ++.+..++.+-+|||||||||.|||||+.+|++|+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL 156 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence 9999999999999999999997533 344555677789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCchhhHHh
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLACLQH 312 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~~~~~ 312 (697)
|||+++||+-++.++.++|-++. +.|+.++++||. .+|..-++++++||+ .|+||..=+++-...|
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999987 568999987776 467778999999998 5899987777633333
No 225
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-37 Score=318.66 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=155.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCccEEEEcCccc--cCC
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~----~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (697)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+ |+|.++|++... ..+.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~---G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccc---cEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 44 999999987532 1247999999974 556
Q ss_pred CCCHHHHHHHHHH-------------------cCCC---ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 196 SLTVREYLYYSAL-------------------LQLP---GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------------l~l~---~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
.+|+.|++.+... ++++ ...++....|||||||||+|||+|+.+|+||||||||+|||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 7899998765321 1233 22345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 254 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999864 89999988876 4788899999999999999999987764
No 226
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=359.03 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEEecccc------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++++||++.|..... ..+.+|+||||.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 35899999999852100 12469999999999999999999999999999999999998875 9999999875
Q ss_pred CC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH--------------------cCCC-ccccccCCCCCHHH
Q 005423 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL--------------------LQLP-GFFCQRKNGLPCGE 226 (697)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~--------------------l~l~-~~~~~~~~~LSGGq 226 (697)
.. .++.++||+|++ .+++.+||.|++.+... ++++ ...++.+++|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 32 134699999997 58889999999875321 2332 23456779999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
||||+|||||+.+|+||||||||+|||+.++.+++++|++++++ |.|||+++|+. ..+.++||+|++|++|++++.|+
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999865 89999987765 57889999999999999999999
Q ss_pred chhhH
Q 005423 306 TLACL 310 (697)
Q Consensus 306 ~~~~~ 310 (697)
+++++
T Consensus 548 ~~~i~ 552 (623)
T PRK10261 548 RRAVF 552 (623)
T ss_pred HHHHh
Confidence 98875
No 227
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=318.30 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=163.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 368899998842 2469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------cCC-------C----ccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQL-------P----GFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l-------~----~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|++.+++ .||+||+.+... .++ + ....+..+.|||||||||+|||+|
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 346999999998885 699999976311 011 1 112334578999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+. .||++++|++|++++.|+.++..
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999999987 899999888874 554 49999999999999998877654
No 228
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-37 Score=315.45 Aligned_cols=190 Identities=27% Similarity=0.422 Sum_probs=158.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 3789999998842 12469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccc-----------cCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQ-----------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~-----------~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++ .||.||+.+.. .+++.+..++ ...+||||||||++|||+
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 1246999999998886 69999986421 1122222222 236999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999764 89999888874 44 799999999999998754
No 229
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=323.76 Aligned_cols=197 Identities=22% Similarity=0.359 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~~ 182 (697)
.++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 2469999999999999999999999999999999999998875 9999999875322 23
Q ss_pred cEEEEcCccccC--CCCCHHHHHHHH-----------------------HHcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 183 SYGFVERETTLI--GSLTVREYLYYS-----------------------ALLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~e~l~~~-----------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++|++|++.+. ...++++++.+. ..+++.+..++.+..||||||||++|||||+
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 599999997542 223567765321 1123333445677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999999999987899999988876 5788899999877 89999999987753
No 230
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=321.75 Aligned_cols=199 Identities=23% Similarity=0.279 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ....+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 589999999884 24699999999999999999999999999999999998752 10134999999987521
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCC----ccccccCCCCCHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QLP----GFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~----~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++|++|++.+++ .||.||+.+.... ++. ...++.+.+||||||||++||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 1346999999998887 4999999764311 110 112345678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe---------CCeEEEEe
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~---------~G~iv~~G 304 (697)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.|
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999976 58999988876 57899999999998 89999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+++++.+
T Consensus 242 ~~~~~~~ 248 (264)
T PRK14243 242 RTEKIFN 248 (264)
T ss_pred CHHHHHh
Confidence 9888753
No 231
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=360.65 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++. .+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|+. |+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPGK---EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCCC---CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHHH
Confidence 59999999999632 3579999999999999999999999999999999999999976 999999988543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH--------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA--------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 2467999999999996 59999998731 01 12222 22334679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 4689999899873 567899999999999999999888754
No 232
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.5e-37 Score=324.84 Aligned_cols=196 Identities=22% Similarity=0.333 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+.. ...+|+|+|+.+++||+++|+|+||||||||+++|+|+++ .. |+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECCEEhhhCCHHH
Confidence 47899999999531 3469999999999999999999999999999999999987 43 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHH------------HHcCCCccccccCCC-----------CCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYS------------ALLQLPGFFCQRKNG-----------LPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~------------~~l~l~~~~~~~~~~-----------LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++ .||+||+... ..+++.+..++.+.+ ||||||||++|||||
T Consensus 75 lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HhhhEEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 1357999999999997 4999999532 122333333344444 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++ ..+. .||||++|++|++++.|++++++.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999999999999875 489999988886 4565 599999999999999999998865
No 233
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-37 Score=368.86 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|++++|++ ..+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 477 ~I~~~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 477 YVELRNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREV 550 (710)
T ss_pred eEEEEEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999999976 999999987542
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++||||
T Consensus 551 lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 551 LANSVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred HHhheeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 2468999999999995 59999997631 01 12322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++.++++.|++ .++|+|+++|+++ ....||+|++|++|++++.|+.+++++
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999986 4789999899874 346699999999999999999998764
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4e-37 Score=313.29 Aligned_cols=189 Identities=29% Similarity=0.425 Sum_probs=161.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.+..+. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68899999884321 12579999999999999999999999999999999999998875 999999987531
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.++.++|++|++.+++.+|+.||+.+.... ++.+..++.++.||||||||++|||+|+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 135699999999999889999999865421 1222234566899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|++|||||||+|||+.++..+.+.|+++++ .++|||+++|++. +.++||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999986 5899999899874 4589999999999986
No 235
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.8e-37 Score=312.12 Aligned_cols=178 Identities=26% Similarity=0.328 Sum_probs=152.5
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------- 179 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------- 179 (697)
++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 367888874 2469999999999999999999999999999999999998875 999999987421
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++.++|++|++.+++.+|++||+.+... +++....++...+||||||||++|||||+.+
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12469999999999998999999987431 1233334566689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. . .+.||++++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 9999999999999999999999999999877999999888874 3 4689999875
No 236
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-37 Score=358.35 Aligned_cols=197 Identities=29% Similarity=0.440 Sum_probs=171.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|++ .+++|+|+|++++|||.+||+||||||||||+++|+|+++|+. |+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999963 4579999999999999999999999999999999999999865 999999988653
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.+++|+|++.+|. .||+||+.++. ..++|+.. .+....||||||||++|||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 2467999999999997 69999998862 11234322 2345689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||+||||||+||+.+...|.+.++++. +++|+++++|.++ .+.+ ||+|+||++|++++.|+.++++.
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999888 5678888888874 4544 99999999999999999998875
No 237
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.5e-37 Score=358.53 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+. .+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999962 2469999999999999999999999999999999999999976 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||+|++.+|+. |++||+.++.. . ++|+.. .+....||||||||++|||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999975 99999987520 1 133222 234467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|+||+||||||+||+.++.+|.+.|+++.+ ++|+|+++|++. ....||+|++|++|++++.|+.++..+
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999864 588988899874 456799999999999999999998754
No 238
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-38 Score=340.00 Aligned_cols=197 Identities=27% Similarity=0.403 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+|+|+++ ..++|+|+|+++++||.+||+|+||||||||+++|+|-.+|+. |+|.+||.++...
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 69999999999753 3479999999999999999999999999999999999999986 9999999875432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------HcCC-------C----ccccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LLQL-------P----GFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l-------~----~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++++.|..++|.. |+++||+++. ..++ | ....+..+.||||||||++|||+
T Consensus 410 ~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 410 LRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred HHHHHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 3478999999999965 9999998742 1111 1 12345568999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|.++++|||||.|||+.++.+|+++|.+-+ +|+|+|+++|+-. -.+.||||++|++|++++.|...+.+.
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999998876 4899999999875 347899999999999999999988764
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.7e-37 Score=318.50 Aligned_cols=190 Identities=25% Similarity=0.370 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.+. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 2469999999999999999999999999999999999998875 99999873 359
Q ss_pred EEEcCccccCCC--CCHHHHHHHH------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 185 GFVERETTLIGS--LTVREYLYYS------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 185 ~yv~Q~~~l~~~--lTV~e~l~~~------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
+|++|++.+++. .|+.+++.+. ..+++.+..++.+..|||||||||+|||||+.+|++|||||||+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred EEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999877765 3788776431 12344444566789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 251 HLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+.++..+.+.|++++++ |+|||+++|++ .++.+.||++++|+ |+++..|+++++.
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999865 89999988876 57889999999996 4799999887764
No 240
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-37 Score=314.69 Aligned_cols=191 Identities=23% Similarity=0.351 Sum_probs=160.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 3789999999853 12469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++ .||+||+.+.. .+++.+. .++....||||||||++|||+|
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 2356999999998776 59999985321 1112111 1346789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++. .||++++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999864 689999888874 555 499999999999998875
No 241
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.8e-37 Score=308.17 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=161.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHHH
Confidence 58999999998521 2369999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 252 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 252 (697)
.++.++|++|++.+++ .||+||+.+.... .+. .++....||||||||++|||+|+.+|++|||||||+||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 1356999999998886 5999999643110 011 34567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 253 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 253 D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|+.++..+.+.|+++. +|+|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 157 D~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 157 DYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999985 4899999888874 5554 999999999999988763
No 242
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=350.28 Aligned_cols=192 Identities=19% Similarity=0.354 Sum_probs=166.6
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------Cc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YG 182 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~ 182 (697)
+|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... ++
T Consensus 2 ~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHhC
Confidence 57888874 2469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++|++|++.+++.+||+||+.+... +++....++.+.+|||||||||+|||||+.+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 69999999988889999999975321 12222334566899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999988899999988775 578889999999999999999987764
No 243
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=318.10 Aligned_cols=200 Identities=22% Similarity=0.249 Sum_probs=166.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (697)
..+.++++++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 3588899988873 3479999999999999999999999999999999999987621 135999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc------------------CCCc----cccccCCCCCHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL------------------QLPG----FFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l------------------~l~~----~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.++ .+|+.||+.+.... ++.. ..++..+.||||||||++|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 134699999999888 58999999865321 1111 1124457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe--------CCeEEEEe
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNTLFFG 304 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~--------~G~iv~~G 304 (697)
||||+.+|++|||||||+|||+.++.++.+.|++++ +++|+|+++|++ .++.++||++++|+ +|++++.|
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999996 478999988876 47889999999996 89999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+.+++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9887643
No 244
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.4e-37 Score=304.34 Aligned_cols=174 Identities=31% Similarity=0.462 Sum_probs=150.4
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (697)
+++|+++.|+. +.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~~-----~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG-----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEECC-----eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 36789988842 469999999999999999999999999999999999998875 9999999875321 2
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+.++|++| ....+++.+..++.+..||||||||++|||+|+.+|+++||||||+|||+.++..+.
T Consensus 73 ~~i~~~~q---------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 73 RKIAYVPQ---------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHHhHHHH---------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 35788888 333455655556778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 262 VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 262 ~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.|++++++ +.|+|+++|++ .++.++||++++|++|++++.|
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999876 88999988876 4777899999999999998654
No 245
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.2e-37 Score=309.48 Aligned_cols=185 Identities=20% Similarity=0.258 Sum_probs=160.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~ 181 (697)
..++++|+++.+. .+.+++++|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 3589999999874 2469999999999999999999999999999999999999875 999999987542 22
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+.++|++|++.+++.+|+.||+.+... +++.+..++....|||||||||+|||+|+.+|++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 458999999999988999999866421 2333334566789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 999999999999999999999988899999988876 578899999999863
No 246
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3e-37 Score=363.97 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|++++|++ ..+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 463 EIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPAD 536 (694)
T ss_pred eEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999953 23569999999999999999999999999999999999999976 999999987643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------L-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++.. . ++|.. ..+....||||||||++||||
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 2467999999999996 499999976420 1 22322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
|+.+|++||||||||+||+.++.+|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++++.
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999987 4789999899874 4578999999999999999999887653
No 247
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=316.63 Aligned_cols=196 Identities=24% Similarity=0.286 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEEeccc---------------ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 005423 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G 168 (697)
+.+.++||+++|...+ ...+.+|+++|+++++||+++|+||||||||||+++|+|+++|.. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4689999998886421 134569999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHH
Q 005423 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 169 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqR 229 (697)
+|.++|. ++++.|+..+.+.+|+.||+.+... .++....++..++||||||||
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 9999985 3566777777778899999875321 123333455678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+||+||+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|+. .++.++||++++|++|++++.|+.+++
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988899999988875 578889999999999999999998877
Q ss_pred HH
Q 005423 310 LQ 311 (697)
Q Consensus 310 ~~ 311 (697)
.+
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 54
No 248
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.1e-37 Score=307.85 Aligned_cols=181 Identities=25% Similarity=0.299 Sum_probs=157.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+... .+
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 36789999884 3469999999999999999999999999999999999998875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
+.++|++|++.+++.+|++||+.+.. .+++.+..++....||||||||++|||+|+.+|++||||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56999999998888899999997642 12344444566789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 249 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|+|||+.++..+.+.|++++++|.|+|+++|++. +....||+++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999888999999999875 567799999887
No 249
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.1e-37 Score=355.20 Aligned_cols=198 Identities=26% Similarity=0.384 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|+++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 369999999999632 2469999999999999999999999999999999999999876 999999987543
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCcccc----------ccCCCCCHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPGFFC----------QRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~~~~----------~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. ..++.+... +....||||||||++||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa 489 (574)
T PRK11160 411 ALRQAISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489 (574)
T ss_pred HHHhheeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence 2457999999999996 49999997641 112222222 2446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ .+ ..||+|++|++|++++.|+.++.++
T Consensus 490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999986 5789999899885 34 5699999999999999999887754
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=347.26 Aligned_cols=193 Identities=23% Similarity=0.357 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++|++|++.+++.+||.||+.+... +++....++.+.+|||||||||+|||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 13469999999999999999999986421 1222233456789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999988899999988876 578889999999999999877653
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6e-37 Score=350.06 Aligned_cols=203 Identities=23% Similarity=0.320 Sum_probs=170.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CCC-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~---~~~- 179 (697)
.++++|+++.|.+.+...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++ |.+ ...
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCcccccccc
Confidence 599999999985211123469999999999999999999999999999999999998875 999996 532 110
Q ss_pred -------CCccEEEEcCccccCCCCCHHHHHHHHH------------------HcCCCc-----cccccCCCCCHHHHHH
Q 005423 180 -------PYGSYGFVERETTLIGSLTVREYLYYSA------------------LLQLPG-----FFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------------~l~l~~-----~~~~~~~~LSGGqrqR 229 (697)
.++.++|++|++.+++.+||.||+.+.. .+++.. ..++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1246999999998999999999997531 123332 2356778999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 89999988876 57889999999999999999999887
Q ss_pred hHH
Q 005423 309 CLQ 311 (697)
Q Consensus 309 ~~~ 311 (697)
+.+
T Consensus 515 ~~~ 517 (520)
T TIGR03269 515 IVE 517 (520)
T ss_pred HHh
Confidence 654
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.3e-37 Score=349.14 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=169.8
Q ss_pred ceEEEEeEEEEEecccc------cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++++|+++.|..... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ .+ |+|.++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~---G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQ---GEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CC---cEEEECCEEc
Confidence 35899999999852100 13569999999999999999999999999999999999986 43 9999999865
Q ss_pred CC--------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH---------------------cCCC-ccccccCCCCCHH
Q 005423 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSAL---------------------LQLP-GFFCQRKNGLPCG 225 (697)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~---------------------l~l~-~~~~~~~~~LSGG 225 (697)
.. .++.++|++|++ .+++.+||.||+.+... +++. ...++.+++||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 32 124699999996 47888999999976421 1222 1235567899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|++++.|
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999865 89999977765 5788899999999999999999
Q ss_pred CchhhH
Q 005423 305 ETLACL 310 (697)
Q Consensus 305 ~~~~~~ 310 (697)
++++++
T Consensus 509 ~~~~~~ 514 (529)
T PRK15134 509 DCERVF 514 (529)
T ss_pred CHHHHh
Confidence 988764
No 253
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-37 Score=318.41 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC---CceeEEEECCEeCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~---~~~G~I~i~G~~~~~-- 179 (697)
.+.++|+++++. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. .+.|++.++|.+...
T Consensus 10 ~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 10 VFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred heeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 589999999984 3569999999999999999999999999999999999998764 112444444444321
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~I 232 (697)
.++.++|++|++.+++.+||+||+.+.... ++. ...++.+..||||||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 135699999999999889999999865321 121 11234568899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+|+.+|++|||||||+|||..++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|+++..|+.++..+
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999975 68999988886 47778999999999999999999887653
No 254
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-36 Score=296.16 Aligned_cols=156 Identities=26% Similarity=0.461 Sum_probs=140.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++++|+++.|++ +++++++|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~-----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGG-----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEECC-----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 468999999852 369999999999999999999999999999999999999875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
.++.++|++| ||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 73 ~~~~i~~~~q--------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 73 RRAGIAMVYQ--------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred HhcCeEEEEe--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 1245888887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 260 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 260 i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
+.+.|++++++|.|+|+++|++ .++.+.||++++|++|++++
T Consensus 121 l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 121 LFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999987799999988875 46788999999999999875
No 255
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2e-36 Score=313.45 Aligned_cols=202 Identities=22% Similarity=0.299 Sum_probs=162.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+. +|.. |+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG---GTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc---eEEEECCCccccCCHH
Confidence 68899999884 246999999999999999999999999999999999995 4654 999999976432
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH--------------------------HcCCCc-cccccC-CCCCHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA--------------------------LLQLPG-FFCQRK-NGLPCGERRR 229 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------------~l~l~~-~~~~~~-~~LSGGqrqR 229 (697)
.+..++|++|++.+++.+|+.+++.... .+++++ ..++.. ++||||||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 1135999999988877766655543210 011221 122233 3799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCchh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~~ 308 (697)
|+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++|++++.|+.+.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999887899999888864 56666 89999999999999998875
Q ss_pred hHHhhhhcC
Q 005423 309 CLQHFSNAG 317 (697)
Q Consensus 309 ~~~~f~~~g 317 (697)
+ +.++..+
T Consensus 233 ~-~~~~~~~ 240 (248)
T PRK09580 233 V-KQLEEQG 240 (248)
T ss_pred H-HHHHhcC
Confidence 4 3344333
No 256
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3e-37 Score=364.78 Aligned_cols=195 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 473 ~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHHH
Confidence 5999999999952 3479999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------c-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------L-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+. |++||+.++.. . ++|.. ..+....||||||||++|||
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 24679999999999965 99999987510 1 12222 22345789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++|+|||||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++++
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999985 4789999899874 457899999999999999999988764
No 257
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-37 Score=356.39 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (697)
.++++||++.|.... ...++|+||||++++||++||+||||||||||+|+|+|+++|.. |+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEeccccccc
Confidence 589999999995321 13479999999999999999999999999999999999998875 99999886320
Q ss_pred ----C---------CCccEEEEcCcc--ccCCCCCHHHHHHHHHH--------------------cCCCc---cccccCC
Q 005423 179 ----M---------PYGSYGFVERET--TLIGSLTVREYLYYSAL--------------------LQLPG---FFCQRKN 220 (697)
Q Consensus 179 ----~---------~~~~~~yv~Q~~--~l~~~lTV~e~l~~~~~--------------------l~l~~---~~~~~~~ 220 (697)
. ..+.+|||+|++ .+++.+||.||+.+... +++++ ..+++++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 113699999997 67888999999976432 23332 2456789
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 221 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||+++|+. ..+.++||||++|++|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCe
Confidence 99999999999999999999999999999999999999999999999865 89999977764 67889999999999999
Q ss_pred EEEEeCchhhH
Q 005423 300 TLFFGETLACL 310 (697)
Q Consensus 300 iv~~G~~~~~~ 310 (697)
+++.|++++++
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99999988764
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.6e-37 Score=348.13 Aligned_cols=197 Identities=22% Similarity=0.364 Sum_probs=168.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+.+|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68899999884 246999999999999999999999999999999999998862 1249999999875421
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccc-cccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFF-CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~-~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++.+||.||+.+.... ++.... ++.+++|||||||||+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence 24699999999999999999999764321 121111 23468999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998899999987765 578889999999999999999987653
No 259
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.9e-37 Score=312.30 Aligned_cols=190 Identities=21% Similarity=0.345 Sum_probs=159.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
..+.++|++|++.+++ .||+||+.+... +++.+ ..++.+..|||||||||+|||+|+.+|+
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1346899999998887 499999975321 22321 2356678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe-CCeEEEEeC
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGE 305 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~~G~ 305 (697)
+|||||||+|||+.++..+.+.|+++++ .|.|||+++|++. ++ +.||++++|+ ++..+.+|.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999976 4899999888874 55 4699999995 555555554
No 260
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=314.83 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 478999999884 2469999999999999999999999999999999999864 210124999999987532
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.+++. |+.||+.+.... ++. ...++....||||||||++
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 13569999999988875 999999764211 111 1123456889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+.+|++++|++|++++.|+++++.
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999964 78999988886 5788999999999999999999988764
No 261
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=317.06 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=166.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~--- 178 (697)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3589999999984 2369999999999999999999999999999999999986421 13599999987542
Q ss_pred ------CCCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------CCC----ccccccCCCCCHHHHH
Q 005423 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALL--------------------QLP----GFFCQRKNGLPCGERR 228 (697)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------~l~----~~~~~~~~~LSGGqrq 228 (697)
..++.++|++|++.+++. ||+||+.+.... ++. +..++....|||||||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 168 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ 168 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence 113468999999998875 999999764211 111 1123456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+.++
T Consensus 169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999977775 57888999999999999999999877
Q ss_pred hH
Q 005423 309 CL 310 (697)
Q Consensus 309 ~~ 310 (697)
+.
T Consensus 247 ~~ 248 (265)
T PRK14252 247 IF 248 (265)
T ss_pred HH
Confidence 54
No 262
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.7e-37 Score=363.53 Aligned_cols=196 Identities=24% Similarity=0.373 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|++. ..+++|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 59999999999632 23579999999999999999999999999999999999999976 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++|||.++. .. ++|+. ..+....||||||||++||||
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 2457999999999996 59999998742 01 12222 223446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.||+|++|++|++++.|+.++..+
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999988 22 236789999899874 456799999999999999999988764
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.1e-36 Score=311.10 Aligned_cols=183 Identities=25% Similarity=0.283 Sum_probs=153.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.++++++.|. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++....
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~----- 89 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLL----- 89 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhh-----
Confidence 66777877663 4579999999999999999999999999999999999998875 9999999864311
Q ss_pred EEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 186 FVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.+...+.+.+||+||+.+... +++.+..++...+||||||||++|||+|+.+|++||||
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112334567899999876432 12333345566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987789999988876 5778899999999999998765
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-36 Score=296.87 Aligned_cols=164 Identities=29% Similarity=0.411 Sum_probs=145.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 368899998842 2469999999999999999999999999999999999998875 99999874 5699
Q ss_pred EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|++|++.++ ..|++||+.+. ...+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 135 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 999998765 57999999763 457899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++ +.|+|+++|++. . ...||++++|++|.
T Consensus 136 ~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 136 EL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred Hh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 86 589999899874 3 47999999998753
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-36 Score=305.96 Aligned_cols=181 Identities=25% Similarity=0.291 Sum_probs=155.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|.+... .+
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 67899999884 2469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHHc----------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSALL----------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
+.++|++|++.+++.+|+.||+.+.... ++.+..++.+..||||||||++|||||+.+|++|+|
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5689999999999999999999765321 222334556689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
||||+|||+.++..+.+.|++++++|.|||+++|++. .+....+|++++
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999877899999888864 666667777766
No 266
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-37 Score=298.79 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=146.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++|+++.+.++ ...+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 3678999988532 1369999999999999999999999999999999999998875 999999987532 1
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 260 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i 260 (697)
++.++|++|++.+++ .|+.||+ |||||||||+|||+|+.+|++|||||||+|||+.++..+
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l 135 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 246999999998886 6999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 261 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 261 ~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.+.|+++++ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 136 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 136 LEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999964 689999888874 6666 99999999985
No 267
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-37 Score=288.02 Aligned_cols=194 Identities=26% Similarity=0.335 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.| +..++|.||++..+.||.+.++||||+|||||+|.|.=+.-|.+ |+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCcc
Confidence 47899999988 35689999999999999999999999999999999998777764 999998854211
Q ss_pred ------CCccEEEEcCccccCCCCCHHHHHHHH--------------------HHcCCCccccccCCCCCHHHHHHHHHH
Q 005423 180 ------PYGSYGFVERETTLIGSLTVREYLYYS--------------------ALLQLPGFFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.+|.|+|+..+.|++||.|||--+ ..+++.+..++.+-.|||||+|||+||
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 235689999999999999999998432 245677778889999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
|||+++|++|++||||++|||+-..+|++.+++|+..|.|-++++|.- ....+.+.+|+.|++|+||+.|+.+
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999988888875 4677889999999999999999864
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.3e-36 Score=315.35 Aligned_cols=181 Identities=26% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCCCCH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 199 (697)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ . |+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~---G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-S---GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-C---eEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 3 9999999875321 2458999999888888999
Q ss_pred HHHHHHHHH------------------cCCCccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCH
Q 005423 200 REYLYYSAL------------------LQLPGFFCQRKNGLPCGERRRVRIARELVM-------RPHVLFIDEPLYHLDS 254 (697)
Q Consensus 200 ~e~l~~~~~------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~-------~P~iLlLDEPTsgLD~ 254 (697)
+||+.+... +++....++..+.||||||||++|||||+. +|++|||||||+|||+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~ 166 (248)
T PRK03695 87 FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 (248)
T ss_pred HHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH
Confidence 999976421 123333345678999999999999999998 6799999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 255 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|+.+++.
T Consensus 167 ~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 167 AQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999987899999988876 4788999999999999999999887653
No 269
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-36 Score=348.88 Aligned_cols=198 Identities=27% Similarity=0.410 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ ..+++|+|+|+++++||.++|+||||||||||+++|+|+++|.. |+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHHH
Confidence 5999999999953 23479999999999999999999999999999999999999875 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH-------------c-------CCCc----cccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL-------------L-------QLPG----FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l-------~l~~----~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++. |++||+.+... . ++|+ ...+....||||||||++||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 24579999999999975 99999974210 0 1222 1234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++.++.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999999767899999999874 457899999999999999999877643
No 270
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=323.01 Aligned_cols=199 Identities=24% Similarity=0.332 Sum_probs=165.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..+.++||++.+. .+.+|+++|+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3589999999984 246999999999999999999999999999999999998521 0124999999987531
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHHc--------------------------------CCC----cccccc
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALL--------------------------------QLP----GFFCQR 218 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------------------~l~----~~~~~~ 218 (697)
.++.++|++|++.+++ .||+||+.+.... ++. ...++.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 1246999999998887 5999999875321 111 112345
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE-EEEeC
Q 005423 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLLSN 297 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v-~vL~~ 297 (697)
+++|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++++++ .|||+++|++ ..+.++||++ ++|++
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~-~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM-QQAARISDQTAVFLTG 275 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH-HHHHHhcCEEEEEecC
Confidence 6889999999999999999999999999999999999999999999999864 8999988876 4778899997 57799
Q ss_pred CeEEEEeCchhhH
Q 005423 298 GNTLFFGETLACL 310 (697)
Q Consensus 298 G~iv~~G~~~~~~ 310 (697)
|++++.|+++++.
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999987654
No 271
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-36 Score=313.82 Aligned_cols=198 Identities=20% Similarity=0.262 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 359999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHH------------HcCC-----------CccccccCCCCCHHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQL-----------PGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l-----------~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++ .|++||+.... ..++ .....+....||||||||++||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 1356999999998886 49998874310 0111 111233457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++. .+.. ||++++|++|++++.|+++++.+
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999975 4889999888875 5554 99999999999999999877644
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-36 Score=345.95 Aligned_cols=205 Identities=23% Similarity=0.292 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~~-- 180 (697)
.++++|+++.|...+ ..+.+|+|+|+++++||++||+||||||||||+|+|+|+++|. ...+|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 489999999985211 1247999999999999999999999999999999999999862 01259999999875321
Q ss_pred -------CccEEEEcCccc--cCCCCCHHHHHHHHH--------------------HcCCCc---cccccCCCCCHHHHH
Q 005423 181 -------YGSYGFVERETT--LIGSLTVREYLYYSA--------------------LLQLPG---FFCQRKNGLPCGERR 228 (697)
Q Consensus 181 -------~~~~~yv~Q~~~--l~~~lTV~e~l~~~~--------------------~l~l~~---~~~~~~~~LSGGqrq 228 (697)
.+.+||++|++. +.+.+|+.|++.+.. .+++.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 146999999974 666789999876421 112322 135677899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|++ ..+.++||+|++|++|++++.|+++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999865 89999988876 5778899999999999999999988
Q ss_pred hhHH
Q 005423 308 ACLQ 311 (697)
Q Consensus 308 ~~~~ 311 (697)
++++
T Consensus 243 ~~~~ 246 (529)
T PRK15134 243 TLFS 246 (529)
T ss_pred HHhh
Confidence 7643
No 273
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-36 Score=352.10 Aligned_cols=196 Identities=24% Similarity=0.358 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|++ .+++|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999963 2469999999999999999999999999999999999999876 9999999876432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+ .|++||+.++. .+ ++|... .+....||||||||++||||
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 367999999999996 59999998742 01 123222 23346799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++..+
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999885 4789999899874 457899999999999999999877653
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-36 Score=344.76 Aligned_cols=197 Identities=23% Similarity=0.254 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (697)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 488999999984 2359999999999999999999999999999999999998875 999999875421 1
Q ss_pred -CccEEEEcCcccc--C------CCCCHHHHHHH-----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 181 -YGSYGFVERETTL--I------GSLTVREYLYY-----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 181 -~~~~~yv~Q~~~l--~------~~lTV~e~l~~-----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++.++|++|++.. + ..+||+|++.+ ...+++.+..++.+.+|||||||||+||+||+.+|
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2358999998542 1 14689888642 12345555567788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
++|||||||+|||+.++..+.+.|++++++|.|||+++|+. ..+.++||++++|++|+++..|+++++.
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999988899999988876 5788999999999999999999987754
No 275
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-36 Score=302.77 Aligned_cols=178 Identities=26% Similarity=0.300 Sum_probs=151.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (697)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 36789999884 3469999999999999999999999999999999999998875 999999987432 12
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
+.++|++|++.+++.+||.||+.+... +++.+..++.+..|||||||||+|||+|+.+|++|+||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 152 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD 152 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 568999999988888999999976432 12333345567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v 294 (697)
|||+|||+.++..+.+.|++++++|.|+|+++|++.. -.+|+++.
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999998889999999998753 24677764
No 276
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-36 Score=346.03 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=166.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG--------- 174 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G--------- 174 (697)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|+. |+|.++|
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEecccccccccc
Confidence 46899999884 246999999999999999999999999999999999996 5654 9999972
Q ss_pred --------------EeC--------C-------CCCccEEEEcCc-cccCCCCCHHHHHHHHHH----------------
Q 005423 175 --------------AKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSAL---------------- 208 (697)
Q Consensus 175 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~---------------- 208 (697)
.++ . ..++.++|++|+ +.+++.+||+||+.+...
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 0 012458999997 678888999999976431
Q ss_pred ---cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHH
Q 005423 209 ---LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTE 284 (697)
Q Consensus 209 ---l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~ 284 (697)
+++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||+++|++ ..
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~ 231 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EV 231 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 1233334566799999999999999999999999999999999999999999999999975 589999988876 56
Q ss_pred HHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 285 VFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 285 i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
+.++||++++|++|++++.|+++++.+.+
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 78899999999999999999988876543
No 277
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-36 Score=310.50 Aligned_cols=188 Identities=24% Similarity=0.348 Sum_probs=158.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.++++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 358999999998532 12469999999999999999999999999999999999998875 999999976421
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH----------------------c--CCCccccccCCCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL----------------------L--QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l--~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.+++ .||+||+.+... + ++....++.+++|||||||||+|||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 1356999999998876 599999965210 1 1223345567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999875 689999888875 564 5999999999974
No 278
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=332.12 Aligned_cols=194 Identities=23% Similarity=0.374 Sum_probs=171.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|. ..++|+||||++++||++||+|.||||||||+|+|+|.++|++ |+|.++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 3689999999994 4689999999999999999999999999999999999999986 9999999976421
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccccccCCCCCHHHHHHHHHHH
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
...|+.|+|+..|+|++||.||+.++... .+....+....+||+||||-|+|||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 24689999999999999999999765321 1211134455899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||..+++|||||||||+|+......+.+.+++|+++|.+||+++|. ..+++++||||.||+||+.|..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999997765 6799999999999999999998883
No 279
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=344.18 Aligned_cols=200 Identities=20% Similarity=0.274 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (697)
..++++|+++.|... +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 358999999887321 124699999999999999999999999999999999999874 54 9999999875321
Q ss_pred ----CccEEEEcCcc---ccCCCCCHHHHHHHHHH------------------------cCCC-ccccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL------------------------LQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~------------------------l~l~-~~~~~~~~~LSGGqrq 228 (697)
+..++|++|++ .+++.+||.||+.+... +++. ...++++..|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 23589999985 47788999999975310 1222 1234566899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||+++|+. .++.++||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999998899999988876 57889999999999999999998766
Q ss_pred h
Q 005423 309 C 309 (697)
Q Consensus 309 ~ 309 (697)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 4
No 280
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=344.67 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.+ ..+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHHH
Confidence 58999998753 138999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCc---cccCCCCCHHHHHHHHHH----------------------------cCCC-ccccccCCCCCHHH
Q 005423 181 --YGSYGFVERE---TTLIGSLTVREYLYYSAL----------------------------LQLP-GFFCQRKNGLPCGE 226 (697)
Q Consensus 181 --~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~----------------------------l~l~-~~~~~~~~~LSGGq 226 (697)
++.++|++|+ ..+++.+||.||+.+... +++. +..++.+++|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 2468999998 468888999999865311 2232 33456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|++ .++.++||++++|++|++++.++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999988899999988876 578899999999999999988876
Q ss_pred h
Q 005423 307 L 307 (697)
Q Consensus 307 ~ 307 (697)
.
T Consensus 494 ~ 494 (510)
T PRK09700 494 R 494 (510)
T ss_pred c
Confidence 3
No 281
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.8e-36 Score=305.39 Aligned_cols=187 Identities=22% Similarity=0.316 Sum_probs=155.2
Q ss_pred EEEEeEEEEEeccccc--CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 005423 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSEM 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~--G~--~~~~ 179 (697)
++++|+++.|..++.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6789999998532111 2469999999999999999999999999999999999998875 999998 42 2211
Q ss_pred ---------CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCcc-ccccCCCCCHHHHHHH
Q 005423 180 ---------PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGF-FCQRKNGLPCGERRRV 230 (697)
Q Consensus 180 ---------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~-~~~~~~~LSGGqrqRv 230 (697)
..+.++|++|++.+++.+||.|++.+... +++... .++.+.+||||||||+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 12468999999999999999999876321 122221 2456789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999999999999999987899999988884 56778999998763
No 282
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-36 Score=303.55 Aligned_cols=180 Identities=25% Similarity=0.356 Sum_probs=149.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++||++.+.+++...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999885311001369999999999999999999999999999999999998875 9999998 589
Q ss_pred EEcCccccCCCCCHHHHHHHHHH------------cCCC-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 186 FVERETTLIGSLTVREYLYYSAL------------LQLP-----------GFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~-----------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
|++|++.++ ..|++||+.+... +++. ....+...+||||||||++|||+|+.+|++
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l 148 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI 148 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999888 4699999976310 1111 112344588999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 243 LFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++|||||+|||+.++..+.+ +++++.++|+|||+++|++. .+.. ||++++|++|+
T Consensus 149 lllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999998 56777666899999899874 5655 99999999985
No 283
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.4e-36 Score=302.34 Aligned_cols=182 Identities=26% Similarity=0.319 Sum_probs=155.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (697)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+++. |+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 478999999884 2469999999999999999999999999999999999998875 999999986432 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|++.+++.+||+||+.+... +++....++.++.||||||||++|||+|+.+|++|||||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 153 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 68999999888888999999976432 123223345668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
||+|||+.++..+.+.|++++++|+|||+++|+.. ++.. |+++.+..
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999888999999888864 5554 88887743
No 284
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.3e-36 Score=376.27 Aligned_cols=204 Identities=21% Similarity=0.289 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++||++.|.+ ..+.+|+|||+.+++||++||+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46999999999852 13579999999999999999999999999999999999999876 999999987632
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
.++.+||++|++.+++.+||+|++.+.+.+ ++.+..+++.++|||||||||+||+||+.+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 235699999999999999999999875432 2223345567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 241 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
+||||||||+|||+.++..+.+.|++++++|+|||+++|+. +++..+|||+++|++|+++..|+++++.+.|.
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999988899999988775 68999999999999999999999999887664
No 285
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-37 Score=310.44 Aligned_cols=180 Identities=29% Similarity=0.414 Sum_probs=159.2
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCCccEEEEcCccccCCCCC
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lT 198 (697)
++++..+.-.++||-|+||||||||+|+|+|+..|+. |.|.+||+... ..++++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4555555547999999999999999999999999986 99999997421 12468999999999999999
Q ss_pred HHHHHHHHH-------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 199 VREYLYYSA-------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 199 V~e~l~~~~-------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|+.||.|+. .+++.+.++++|..|||||||||+|+|||++.|++|+||||.+.||-....+++-.|+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence 999999864 3455666789999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 266 KLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 266 ~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+++ +.-|+.++|.. .|+.+++|+|++|++|++..+|+.+++..
T Consensus 173 RL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 173 RLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99965 67788877764 79999999999999999999999998864
No 286
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.3e-36 Score=348.98 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+.. .+++|+|+|+++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||.+...
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLAS 403 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHHH
Confidence 59999999998532 3469999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------c-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------L-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++||+|++.+|+. |++|||.++.. + ++|.. ..+....||||||||++|||
T Consensus 404 ~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 404 LRRQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHhhceEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 23579999999999964 99999976420 1 12322 22334679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+.+|+||+||||||+||..++..+++.|+++. +++|+|+++|++ ...+.||+|++|++|+++..|+.++.++
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999999985 568999989987 4568899999999999999999888753
No 287
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-36 Score=358.34 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+|.|+. +...++|+|+|+++++|+.+||+|||||||||+..+|-+.+.|.. |+|.+||.+++.
T Consensus 987 ~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred EEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHHH
Confidence 5999999999984 356789999999999999999999999999999999999999876 999999998654
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccc----cccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFF----CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~a 235 (697)
.++++|.|.|+|.||. .|++||+.|+. ...+|+.+ .++..+||||||||+|||||
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 2468999999999996 49999999971 11244433 34557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++||+||||||.||+||+++.+.|-+.|.+.. .|+|.|++.|..+ ..+.||.|+|+++|+|++.|+-++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999999976 5677777788875 357899999999999999999998875
No 288
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.1e-36 Score=355.36 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=168.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .|++||+.+.. . .++|.. ..+...+||||||||++||||
T Consensus 529 ~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 529 LRRQMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHhCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 2457999999999996 59999997631 0 112322 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++.++++.|+++. .++|+|+++|++. .+ +.||+|++|++|++++.|+.+++.+
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 5789999999874 34 5699999999999999999888754
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.5e-36 Score=306.40 Aligned_cols=175 Identities=30% Similarity=0.449 Sum_probs=149.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCC--CCCHHHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG--SLTVREYLYYSAL 208 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~--~lTV~e~l~~~~~ 208 (697)
+++++||+++|+|+||||||||+++|+|+.++++ |+|.++|++....++.++|++|++.++. .+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4578999999999999999999999999998875 9999999875433457999999987642 4799999865311
Q ss_pred -----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 209 -----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 209 -----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
+++....++.+.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122223345568999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+++++|+|+|+++|++ .++.++||+++++ +|++++.|+.+++.
T Consensus 158 ~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9987899999988886 4788999999999 89999999987754
No 290
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.67 Aligned_cols=196 Identities=23% Similarity=0.282 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++||++.+.+. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+++|.. |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 358899998887532 22469999999999999999999999999999999999998875 9999999752
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
++.+...+.+.+|++||+.+... +++....++.++.||||||||++|||||+.+|++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL 166 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV 166 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 12223445667899999865321 223334456778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 313 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 313 (697)
|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++...+
T Consensus 167 LDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 167 IDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999999988899999988876 5788899999999999999999998876543
No 291
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.2e-36 Score=299.32 Aligned_cols=178 Identities=22% Similarity=0.305 Sum_probs=151.6
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (697)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++.... +
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68899999884 2469999999999999999999999999999999999998875 9999999865321 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH--------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL--------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+.++|++|+..+++.+||+||+.+... ++++...++...+||||||||++|||+|+.+|++|||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 569999999888888999999987421 123333445668999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
||+|||+.++..+.+.|++++++|.|||+++|++. ..+.+|...
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999878999999888864 335576543
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-36 Score=346.08 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|+. ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 5899999999853 23469999999999999999999999999999999999999876 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++|++|++.+++. |++||+.++. .. ++|+. ..+....||||||||++||||
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 23579999999999964 9999997641 01 12221 223446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||++||+.++..+.+.|+++. +|+|+|+++|++. ..+.||++++|++|++++.|+.+++.+
T Consensus 466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999986 5889999999874 346799999999999999999887654
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.7e-36 Score=345.72 Aligned_cols=196 Identities=23% Similarity=0.302 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999853 2368999999999999999999999999999999999999876 999999987543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .|++||+.++.. .++|+. ..+....||||||||++||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 2357999999999986 599999976410 112221 234457899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++||||||||+||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+.++..+
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999885 5899999999874 44 6799999999999999999887654
No 294
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.6e-36 Score=346.17 Aligned_cols=199 Identities=22% Similarity=0.357 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPA 410 (576)
T ss_pred ceEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999632 12579999999999999999999999999999999999999875 9999999875432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++|++|++.+|+ .|++||+.++. .. ++|.. ..+....||||||||++|||
T Consensus 411 ~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 411 ELRARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred HHHHhceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHH
Confidence 357999999999996 49999998731 01 12221 22344679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|++. ....||+|++|++|+++..|+.++..+
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999999999999999985 5789999899873 457899999999999999999887643
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-36 Score=304.53 Aligned_cols=190 Identities=26% Similarity=0.305 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEeccc--cc--CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 005423 105 SVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~ 180 (697)
.++++||++.|+.+. .. ...+++||||.+++||+++|+|+||||||||.|+|.|+++|++ |+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhc
Confidence 589999999987532 11 2479999999999999999999999999999999999999976 9999999874322
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 259 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~ 259 (697)
. .....+....+-..++++. ...+++++||||||||++|||||+.+|+++++|||||+||...+.+
T Consensus 81 ~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 81 S-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred c-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 1 0101111222333445554 5678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 260 MMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 260 i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+++++ .|.|.++++|+ ...+..++|||.||..|++|+.|+.++++.
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHD-L~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHD-LSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEE-HHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999995 59999997776 468999999999999999999999998865
No 296
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.6e-36 Score=373.52 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--------------------
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-------------------- 164 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-------------------- 164 (697)
.++++||+|.|++. ..+++|+|+|+++++|+.+||+||||||||||+++|.|+++|..
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 59999999999742 23479999999999999999999999999999999999998720
Q ss_pred -------------------------------CceeEEEECCEeCCC-----CCccEEEEcCccccCCCCCHHHHHHHHH-
Q 005423 165 -------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSA- 207 (697)
Q Consensus 165 -------------------------------~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~- 207 (697)
..+|+|.+||.++.. .++.++||+|++.||+ .|++|||.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC
Confidence 035999999998643 2467999999999995 69999998852
Q ss_pred -------------------HcCCCccc----cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005423 208 -------------------LLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 264 (697)
Q Consensus 208 -------------------~l~l~~~~----~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L 264 (697)
...+|+.+ .+....||||||||++|||||+.+|+|||||||||+||+.+++.|.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 01234332 2345679999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC----CeEE-EEeCchhhHH
Q 005423 265 KKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 311 (697)
Q Consensus 265 ~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 311 (697)
+++. .+++|+|+++|+.+ ..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1402 ~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9987 46899999899874 4567999999999 9955 8999888753
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=337.96 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++ +.+++|+|+++++||+++|+||||||||||+|+|+|+.+|.+ |+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 578888863 148999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHH-------------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSA-------------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-------------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
++.++|++|++ .+++.+|+.||+.+.. .+++. ...++++..||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 24689999986 4888899999986421 12231 23456678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|+||||||||+|||+.++.+++++|++++++|.|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999998899999988876 578899999999999999999988764
No 298
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=322.30 Aligned_cols=203 Identities=26% Similarity=0.400 Sum_probs=177.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++++++.-++ ..+++|+++||.+.+||.+||+||||||||||.|+|.|..+|.. |.|.+||.+...+
T Consensus 333 g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~e 406 (580)
T COG4618 333 GALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDRE 406 (580)
T ss_pred ceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCHH
Confidence 46999999985432 45789999999999999999999999999999999999999876 9999999876443
Q ss_pred --CccEEEEcCccccCCCCCHHHHHH-HH-----------H--------HcCCCccccc----cCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLY-YS-----------A--------LLQLPGFFCQ----RKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~-~~-----------~--------~l~l~~~~~~----~~~~LSGGqrqRv~IA~ 234 (697)
-+.+||.||+-.||+. ||.||+. |. + .+++|..++. ....||||||||+++||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 2579999999999975 9999994 22 1 2456655443 34789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++..+.
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999885 678999999999999999999999998765
Q ss_pred h
Q 005423 315 N 315 (697)
Q Consensus 315 ~ 315 (697)
.
T Consensus 564 ~ 564 (580)
T COG4618 564 R 564 (580)
T ss_pred C
Confidence 3
No 299
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=336.62 Aligned_cols=191 Identities=21% Similarity=0.328 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 578888863 36999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHHH-------------------------HcCCC-ccccccCCCCCHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYSA-------------------------LLQLP-GFFCQRKNGLPCGERRR 229 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~~-------------------------~l~l~-~~~~~~~~~LSGGqrqR 229 (697)
++.++|++|++ .+++.+||.||+.+.. .+++. ...++.+..||||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 24699999995 5778899999996521 01232 23456678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999988899999988875 588899999999999999999988765
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-35 Score=337.51 Aligned_cols=198 Identities=22% Similarity=0.289 Sum_probs=166.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (697)
..++++|+++.+.++ ..+.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+ |+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEECCEECCCCCH
Confidence 358999999876311 124699999999999999999999999999999999999975 44 9999999875321
Q ss_pred ----CccEEEEcCcc---ccCCCCCHHHHHHHHHH------------------------cCCCc-cccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL------------------------LQLPG-FFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~------------------------l~l~~-~~~~~~~~LSGGqrq 228 (697)
++.++|++|+. .+++.+||+||+.+... +++.. ..++++..|||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 24689999995 57888999999865310 11221 234556899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999998899999988876 5788999999999999999877654
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=336.81 Aligned_cols=199 Identities=24% Similarity=0.293 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+..+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+. |+|.+||+++...
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999985321 23469999999999999999999999999999999999999875 9999999875421
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++|++|+..+++.+|+.||+.+... +++.+..++.++.||||||||++|||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999999999999976421 2333444567789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++++.|++++.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999999999999999999999999999999878999999888864 44 57999999999999999988754
No 302
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.8e-35 Score=306.97 Aligned_cols=187 Identities=23% Similarity=0.346 Sum_probs=156.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------
Confidence 346999999984 1369999999999999999999999999999999999999875 9999988
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
.++|++|++.+++. ||+||+.+... +++... ..+....||||||||++|||+|+.+
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 38999999988875 99999875311 111111 1123468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++|||||||+|||+.++..+++.+ ++++ ++.|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999865 5654 4789999888875 44 5799999999999999999887643
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.3e-35 Score=293.49 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=134.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCccEEEEcCccc--c
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT--L 193 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~--l 193 (697)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++... .++.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999998875 999999987531 1246899999973 4
Q ss_pred CCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 194 IGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
+ ..||+||+.+... +++.+..++.+.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 82 ~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 5 4699999977431 1233334566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 255 VSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.++..+.+.|++++++|+|||+++|++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999888999999989863
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-35 Score=298.12 Aligned_cols=183 Identities=23% Similarity=0.292 Sum_probs=150.8
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (697)
.+.|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 45677887742 2469999999999999999999999999999999999998875 999999976421
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~ 234 (697)
.++.++|++|++.++ ..|++||+.+... +++.+. ..+.+..|||||||||+|||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 124699999999887 5799999976311 111111 12456899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+|+.+|++|||||||+|||+.++..+++ +++.+++.|.|+|+++|++. .+ ..||++++|++|.
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 9999999999999999999999999998 67777777899999888875 45 4699999999884
No 305
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=289.59 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=173.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++++||+++| +.+.+|+++|..+++|.+++|+|||||||||||.+++++++.++ |+|.++|.+.....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 5788999888 35689999999999999999999999999999999999999876 99999999864332
Q ss_pred -ccEEEEcCccccCCCCCHHHHHHHHHH---------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 182 -GSYGFVERETTLIGSLTVREYLYYSAL---------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 182 -~~~~yv~Q~~~l~~~lTV~e~l~~~~~---------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
+.++.+-|+..+...+||+|-+.|+.. +++.+..++...+||||||||.-||..|+++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 457788899888889999999988631 2344444556689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+.++||||.++||...+.++|+.|+++++ -|+||+++.|+- ..+..++|.|+-|++|+++..|+++++.+
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999995 499999999876 47778999999999999999999999864
No 306
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5.9e-35 Score=314.28 Aligned_cols=167 Identities=29% Similarity=0.491 Sum_probs=146.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCccEEEEcCccccCCCCCHHHHHHHHHH---------
Q 005423 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSAL--------- 208 (697)
Q Consensus 141 IiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------- 208 (697)
|+||||||||||||+|+|+.+|++ |+|.++|++... ..+.++|++|++.+++.+||+||+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999987532
Q ss_pred ----------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEE
Q 005423 209 ----------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 209 ----------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t 277 (697)
+++.+..++.+++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 23334456677899999999999999999999999999999999999999999999999864 8999998
Q ss_pred EecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 278 ih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++ .++..+||++++|++|+++..|+++++.+
T Consensus 158 THd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 8876 57889999999999999999999988754
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-34 Score=333.81 Aligned_cols=188 Identities=26% Similarity=0.327 Sum_probs=161.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.+ .+.+|+|||+++++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..+
T Consensus 6 ~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 6899999999841 3579999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-------------------------------------------------------c
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-------------------------------------------------------L 209 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-------------------------------------------------------l 209 (697)
|||+|++.+++.+||.||+.+... +
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999999999999976311 0
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
+++ ..++...+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|+. ..+.++|
T Consensus 153 gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~~~~~~~ 227 (556)
T PRK11819 153 RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-YFLDNVA 227 (556)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-HHHHhhc
Confidence 011 1245668999999999999999999999999999999999999999999999873 4888877765 6788999
Q ss_pred CEEEEEeCCeEE-EEeCchhhH
Q 005423 290 DRICLLSNGNTL-FFGETLACL 310 (697)
Q Consensus 290 D~v~vL~~G~iv-~~G~~~~~~ 310 (697)
|+|++|++|+++ +.|+.++..
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 788777643
No 308
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8e-35 Score=334.89 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=158.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++++...+++|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3699999999996421112469999999999999999999999999999999999999876 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHH----------HHHHcCCCcccccc------CCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLY----------YSALLQLPGFFCQR------KNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~----------~~~~l~l~~~~~~~------~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
++.++||+|++.+|.. |+++|+. ....+++.+...+. ...||||||||++|||||+.+|+|
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i 491 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI 491 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3569999999998864 7777742 11223333322222 256999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
|||||||++||+.++..+.+.+. .+..+|+|+|+++|++. ..+.||+|++|++|++++.
T Consensus 492 lilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998664 56667899999999874 4578999999999999853
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=331.98 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=160.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|++++|. .+++|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999998875 99999873 3589
Q ss_pred EEcCccccCCCCCHHHHHHHHHH---------------------------------------------------cCCCcc
Q 005423 186 FVERETTLIGSLTVREYLYYSAL---------------------------------------------------LQLPGF 214 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~---------------------------------------------------l~l~~~ 214 (697)
|++|++.+++.+||+|++.+... ++++..
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999988889999999875310 112211
Q ss_pred c-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 215 F-CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 215 ~-~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
. ++...+|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.++||+++
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~~d~i~ 223 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSVCTHMA 223 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhhcceEE
Confidence 1 235689999999999999999999999999999999999999999999864 588999977775 57889999999
Q ss_pred EEeCCeE-EEEeCchhhHH
Q 005423 294 LLSNGNT-LFFGETLACLQ 311 (697)
Q Consensus 294 vL~~G~i-v~~G~~~~~~~ 311 (697)
+|++|++ ++.|+.++..+
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 58888876653
No 310
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.3e-35 Score=332.48 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++. .+|+|||+.+++||++||+||||||||||+|+|+|+.+|.. |+|.++|+++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHHH
Confidence 578888872 25999999999999999999999999999999999998875 9999999875321
Q ss_pred --CccEEEEcCcc---ccCCCCCHHHHHHHH----------------------HHcCCC-ccccccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERET---TLIGSLTVREYLYYS----------------------ALLQLP-GFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~e~l~~~----------------------~~l~l~-~~~~~~~~~LSGGqrqRv~I 232 (697)
+..++|++|++ .+++.+|+.||+... ..+++. ...++++++|||||||||+|
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 24689999984 478888999987421 012343 34556778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998899999987776 588899999999999999999987654
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8.4e-35 Score=295.05 Aligned_cols=177 Identities=18% Similarity=0.186 Sum_probs=148.0
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|. ++|... .+.+++.+++.+|++||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999998875 9997 777532 123456788899999999
Q ss_pred HHHHHc----------------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005423 204 YYSALL----------------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267 (697)
Q Consensus 204 ~~~~~l----------------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 267 (697)
.+.... +++...++..++||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 71 RMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 875331 1222234566899999999999999999999999999999999999999999988654
Q ss_pred HHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 268 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 268 ~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
.+ ++|+|+++|++ .++.++||++++|++|++++.|+.+++.+++.
T Consensus 151 ~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 151 LQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred hh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 43 35788877776 57888999999999999999999988876654
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=313.26 Aligned_cols=192 Identities=25% Similarity=0.365 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~-- 180 (697)
.++++|+++.|+ ...+++|||+.+++||++||+|+||||||||+++|.|.++|++ |+|.++|++... +
T Consensus 4 ~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHHH
Confidence 589999999985 4579999999999999999999999999999999999999986 999999997542 2
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH----------------------HcCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA----------------------LLQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~----------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
+..||+|.|+..|++++||.||+.++. ..+++-..+++..+||-||||||.|-++|
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 246999999999999999999997653 22333344566789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
..+|++|||||||+-|-|....++++.|++|+++|+|||+++|- ..|+.++|||+.||.+|+++..-+
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999997776 579999999999999999987666
No 313
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-34 Score=332.03 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=157.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999962 2469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHH---------HHHHHcCCCccccc-----cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 180 PYGSYGFVERETTLIGSLTVREYL---------YYSALLQLPGFFCQ-----RKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l---------~~~~~l~l~~~~~~-----~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++.++||+|++.+|+. |++||- .+...+++...... ....||||||||++|||||+.+|++|||
T Consensus 395 ~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred HhhheEEEecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 24579999999998864 776651 11222333322211 1358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~ 303 (697)
|||||+||+.++..+.+.|.+.. +.++|+|+++|++ +..+.||++++|++|++++.
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998765 4589999999987 34678999999999999876
No 314
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-35 Score=366.59 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ..+++|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLMD 1310 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHHH
Confidence 5999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|.. |++|||.+.. .. ++|.. ..+....||||||||++|||||
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999965 9999996531 11 12322 2234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|..+ .+ ..||||+||++|++++.|+++++++
T Consensus 1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999975 4789999888874 34 4599999999999999999999864
No 315
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-34 Score=364.34 Aligned_cols=197 Identities=19% Similarity=0.288 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|+. ..+++|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999952 23479999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|+. |++|||.+.. ..+ +|.. ..+....||||||||++|||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996421 111 2222 2234468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|+++++++
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 5789999888874 44 4599999999999999999998764
No 316
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=316.71 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=169.6
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-- 179 (697)
.+..++|+||++.|+ .++++|+||||++.||+.+||+||||+||||++|+|.++...++ |.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s---GsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS---GSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC---ceEEEcCchHHHHH
Confidence 455799999999996 45789999999999999999999999999999999999987664 999999998643
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcccc----ccCCCCCHHHHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFC----QRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~----~~~~~LSGGqrqRv~I 232 (697)
.++.||.||||..+|.+ |+..|++|+. .++.|+... ++.-.|||||||||+|
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 24679999999999965 9988887741 234555433 3445699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++++|.+++|||.||+||..+..+|...|.++++..+||++ .|..+.. -.+|.|+++++|+|++.|..+|++.
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTi--vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTI--VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehhe--ecccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999999999999999999975555554 7876543 3699999999999999999988764
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-34 Score=298.37 Aligned_cols=161 Identities=22% Similarity=0.281 Sum_probs=136.9
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH--
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-- 207 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-- 207 (697)
++.+++||+++|+||||||||||+++|+|+++|.. |+|.++|. .++|++|+......+||+|++.+..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence 34445899999999999999999999999999875 99999985 5899999987777889999986431
Q ss_pred -------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCE
Q 005423 208 -------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCT 273 (697)
Q Consensus 208 -------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~t 273 (697)
.+++....++.+.+|||||||||+||++|+.+|+++||||||++||+.++..+.+.|+++++ .|+|
T Consensus 89 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 89 FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred ccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12333344567789999999999999999999999999999999999999999999999985 4899
Q ss_pred EEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 274 LLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 274 vi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
||+++|+. ..+..+||++++|+++..+
T Consensus 169 iiivsHd~-~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 169 AFVVEHDI-IMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEcCCCee
Confidence 99988775 5788899999999765433
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-34 Score=287.44 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=147.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (697)
++++|+++.+. .+.++ ++|+++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+.... .+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 67899999984 23455 4999999999999999999999999999999998875 9999999875322 2458
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH--------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL--------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
+|++|+..+++..||.||+.+... +++.+..++..+.||||||||++|||+|+.+|++|+|||||+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999878788999999976421 233334456678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
|||+.++..+.+.|++..+.|+|+|+++|++. .+ +.+|-+
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999887778899999888874 33 346654
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=327.05 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=161.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.. +.+|+|||+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 358999998752 259999999999999999999999999999999999998875 9999999875421
Q ss_pred ---CccEEEEcCcc---ccCCCCCHHHH-----HHHH--------------------HHcCCC-ccccccCCCCCHHHHH
Q 005423 181 ---YGSYGFVERET---TLIGSLTVREY-----LYYS--------------------ALLQLP-GFFCQRKNGLPCGERR 228 (697)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~e~-----l~~~--------------------~~l~l~-~~~~~~~~~LSGGqrq 228 (697)
++.++|++|+. .+++.+|+.+| +.+. ..+++. ...++.+.+|||||||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 23489999985 36777877665 3211 011232 2345677899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++..++++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999999998899999988876 5788999999999999999877653
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-34 Score=329.96 Aligned_cols=190 Identities=25% Similarity=0.319 Sum_probs=160.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||+++|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.+++. ..+
T Consensus 4 ~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IKV 70 (552)
T ss_pred EEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 5899999999841 2469999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH---------------cCCC-c-----------------------------------
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL---------------LQLP-G----------------------------------- 213 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~-~----------------------------------- 213 (697)
+||+|++.+++.+||+||+.+... ...+ .
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999999999999976311 0000 0
Q ss_pred ---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 214 ---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 214 ---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
..++....|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+. ..+..+||
T Consensus 151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~~~~~~~d 226 (552)
T TIGR03719 151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-YFLDNVAG 226 (552)
T ss_pred CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcC
Confidence 124556899999999999999999999999999999999999999999999876 35888877765 57888999
Q ss_pred EEEEEeCCeEE-EEeCchhhHH
Q 005423 291 RICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 291 ~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
++++|++|+++ +.|+.++..+
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7788776544
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.5e-34 Score=272.93 Aligned_cols=144 Identities=29% Similarity=0.406 Sum_probs=130.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++.+.+ ..+++++|+.+++||+++|+||||||||||+++|+|+.++.. |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG-----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEECC-----ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 367899988742 369999999999999999999999999999999999998875 99999985 4689
Q ss_pred EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
|++| ||+||+||++|||+|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 67 ~~~~--------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 67 YFEQ--------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred EEcc--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 9988 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 266 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++ ++|+|+++|++ +++.++||++++|++|+
T Consensus 115 ~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 115 EY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred Hc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 87 46899877775 57888999999999985
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.6e-35 Score=333.46 Aligned_cols=168 Identities=29% Similarity=0.400 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (697)
.++++||+|.|++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+... .
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHHH
Confidence 5999999999963 2359999999999999999999999999999999999999976 999999987542 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH-------------H-------cCCCcccc----ccCCCCCHHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA-------------L-------LQLPGFFC----QRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~-------l~l~~~~~----~~~~~LSGGqrqRv~IA~aL 236 (697)
++.++||+|++.+|+. |++||+.++. . .++|+..+ +....||||||||++|||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 3579999999999965 9999998741 0 12333222 33467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999864 578999988874
No 323
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-34 Score=281.45 Aligned_cols=208 Identities=24% Similarity=0.352 Sum_probs=176.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||.+++.++ +.||++||++|++||+.|||||||||||||.++|+|.- ....++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhH
Confidence 58999999998532 58999999999999999999999999999999999984 333467999999998632
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHHc----------------------CCCc-cccccC-CCCCHHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL----------------------QLPG-FFCQRK-NGLPCGERRRVRIAR 234 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------------~l~~-~~~~~~-~~LSGGqrqRv~IA~ 234 (697)
.+..+...+|.|.-++..++.+.|+.+... +++. ..+|.. .++|||||||..|+.
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ 157 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQ 157 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHH
Confidence 134577889999999999999988765432 1222 112222 689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc--CEEEEEeCCeEEEEeCchhhHHh
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~--D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
.++.+|++.|||||-||||..+-+.|-+.+++++++|.+++++||.. .+.++. |+|.||.+|+||..|.+ ++.++
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 99999999999999999999999999999999999999999988875 566666 99999999999999999 88899
Q ss_pred hhhcCCCC
Q 005423 313 FSNAGFPC 320 (697)
Q Consensus 313 f~~~g~~~ 320 (697)
++..||.|
T Consensus 235 le~~gy~~ 242 (251)
T COG0396 235 LEEKGYDW 242 (251)
T ss_pred HHHhchHH
Confidence 99888865
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=327.70 Aligned_cols=190 Identities=24% Similarity=0.338 Sum_probs=162.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+. |+|.++|. ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 3699999999984 2469999999999999999999999999999999999998875 99999874 46
Q ss_pred EEEEcCccc--cCCCCCHHHHHHHHH--------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 184 YGFVERETT--LIGSLTVREYLYYSA--------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~e~l~~~~--------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
++|++|++. +++.+||.|++.+.. .+++. ...++.+.+|||||||||+|||+|+.+|+|||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999863 556789999985421 12332 3346678999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
|||+|||+.++..+.+.|+++ +.|||+++|++ ..+.++||++++|++|+++ +.|+++++++
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999999887 35899888776 5788899999999999998 8888776543
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-34 Score=330.67 Aligned_cols=181 Identities=27% Similarity=0.399 Sum_probs=153.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+++ .+++|+|+|++++|||.+||+||||||||||+|+|+|+++|+. |+|.+||.+...
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999976 999999997543
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+|+ .|++||+.++. ..+ +|+. ..+....||||||||++||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 2457999999999996 59999997642 011 2221 123446799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++. . .+.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 999999999999999999999999999999986 5789999899874 3 4679999875
No 326
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-35 Score=275.40 Aligned_cols=175 Identities=21% Similarity=0.392 Sum_probs=154.0
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCC
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIG 195 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~ 195 (697)
...++|+++|+.+++||..+|.||||||||||+|+++.+++|+. |++++.|++... .+.+++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 35689999999999999999999999999999999999999986 999999998643 2467999999999998
Q ss_pred CCCHHHHHHHHHHc-----------------CCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 196 SLTVREYLYYSALL-----------------QLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 196 ~lTV~e~l~~~~~l-----------------~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
. ||++|+.|...+ .+++ .++++..+||||||||++|+|-|..-|+||+||||||+||+.++
T Consensus 91 ~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred c-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 6 999999875433 2333 24556689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 258 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 258 ~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
.+|-++|.++. +++..++.++|++. +..+.||+++-+..|++
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999997 67889999888874 66789999999999875
No 327
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4e-34 Score=360.01 Aligned_cols=197 Identities=22% Similarity=0.337 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+.. ...+|+|||++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred cEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999876 999999998653
Q ss_pred CCccEEEEcCccccCCCCCHHHHHH-HH-----------HHcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLY-YS-----------ALLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~-~~-----------~~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|+. |++|||. +. ..++ +|+.+ .+....||||||||++|||||
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996 21 0111 22222 234467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. . ...||||++|++|++++.|+++++++
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999875 5789999888874 3 45699999999999999999998865
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=299.80 Aligned_cols=206 Identities=25% Similarity=0.314 Sum_probs=170.2
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (697)
..+.++||++.+.... +...++++|||.+++||.+||+|+||||||-..+.++|++|.. ...+|+|.++|.+.-.
T Consensus 5 ~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4689999999996432 4678999999999999999999999999999999999999863 3456999999987421
Q ss_pred -------CCccEEEEcCccc--cCCCCCHHHHH----HHH----------------HHcCCCc---cccccCCCCCHHHH
Q 005423 180 -------PYGSYGFVERETT--LIGSLTVREYL----YYS----------------ALLQLPG---FFCQRKNGLPCGER 227 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~--l~~~lTV~e~l----~~~----------------~~l~l~~---~~~~~~~~LSGGqr 227 (697)
.-.+|+.++|++. |.|-.|+..-+ ... ...++++ .++.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 1146999999974 45555654443 221 1123332 35678899999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|||.||.||+.+|++||.||||++||...+.+|+++|++|++ .|..+++++|+ ...+.+++|||+||.+|++|+.|.+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD-L~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD-LGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc-HHHHHHhhhhEEEEeccEEeecCcH
Confidence 999999999999999999999999999999999999999984 59999996665 5689999999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
++++.
T Consensus 243 ~~lF~ 247 (534)
T COG4172 243 ETLFA 247 (534)
T ss_pred HHHhh
Confidence 88763
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.5e-34 Score=279.76 Aligned_cols=153 Identities=23% Similarity=0.255 Sum_probs=133.3
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 188 (697)
.||++.|. .+.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.. ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57777773 34688885 8999999999999999999999999999999876 999999863 78888
Q ss_pred CccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005423 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 189 Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 268 (697)
|+.. ||||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++
T Consensus 68 q~~~-----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 68 QYID-----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ccCC-----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 8542 99999999999999999999999999999999999999999999998
Q ss_pred HcC-CEEEEEEecChHHHHhccCEEEEEeCCeEEEE--eCch
Q 005423 269 STG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETL 307 (697)
Q Consensus 269 ~~g-~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~--G~~~ 307 (697)
+++ .|+|+++|++ ..+.++||++++|+++-.++. |.+.
T Consensus 119 ~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 119 EEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 765 8999988875 577789999999998766544 5544
No 330
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.5e-34 Score=358.93 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ....+|+|||++|+|||.+||+|+||||||||+++|.|+++|.. |+|.+||.++..
T Consensus 1308 ~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLRE 1381 (1560)
T ss_pred eEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999953 23469999999999999999999999999999999999999876 999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+++|+|++.+|.. |++|||.... ..+ +|+.+ .+....||||||||++|||||
T Consensus 1382 LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred HHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 24679999999999965 9999996421 112 22222 233467999999999999999
Q ss_pred hhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|... ....||+|++|++|++++.|+++++++
T Consensus 1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 996 89999999999999999999999999864 4789999888863 446799999999999999999998864
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.7e-34 Score=357.23 Aligned_cols=186 Identities=22% Similarity=0.355 Sum_probs=157.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~~~~---- 179 (697)
.++++||++.|+.. ..+++|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 69999999999632 23469999999999999999999999999999999999999876 999995 565432
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------------------------------------------
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------------------------------------- 208 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------------------------------------- 208 (697)
.++.+|||+|++.+|+ .||+||+.++..
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2356999999999997 599999988521
Q ss_pred --------------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 209 --------------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 209 --------------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+ ++|+. ..+....||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 0 11111 1234578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 258 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 258 ~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
..|.+.|+++++ +|+|+|+++|+.+ .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999985 5899999888874 44 689999999986
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.5e-34 Score=321.89 Aligned_cols=194 Identities=25% Similarity=0.361 Sum_probs=157.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 4699999999984 246999999999999999999999999999999999987651 13999999975321
Q ss_pred --CCccEEEEcCccccCC--CCCHHHHHHHH-----------------------HHcCCCc-cccccCCCCCHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIG--SLTVREYLYYS-----------------------ALLQLPG-FFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~--~lTV~e~l~~~-----------------------~~l~l~~-~~~~~~~~LSGGqrqRv~ 231 (697)
.++.++|++|++.++. ..++.+++.+. ..+++.. ..++++.+|||||||||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 411 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL 411 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH
Confidence 1246999999876543 24676665421 0123443 345667899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~G~ 305 (697)
|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. .++.+ +||++++|++|++++.-.
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999999998776 4688888876 46766 599999999999987654
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.2e-33 Score=323.18 Aligned_cols=184 Identities=25% Similarity=0.287 Sum_probs=159.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.+.+ ..|+++|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46899999998742 35999999999999999999999999999999999999875 999986 25
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL 249 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 249 (697)
++|++|+..+.+.+||+|++.+.. .+++.+..++.+.+|||||||||+|||+|+.+|+||||||||
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 899999988888899999997642 123334456778999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 250 YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 250 sgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+|||+.++..+.++|+++++ .|+|||+++|+. .++..+|||+++|+ |++...|..
T Consensus 482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 99999999999999999986 489999988875 57888999999996 588877764
No 334
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-33 Score=275.32 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=131.1
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+++|+|+|+++++||+++|+||||||||||||+|.+ . +|+|.++|......+..++|++| .|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q----------~~ 69 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ----------LQ 69 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH----------HH
Confidence 3578999999999999999999999999999999963 2 39999998743333345888887 22
Q ss_pred HHHHHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 005423 202 YLYYSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278 (697)
Q Consensus 202 ~l~~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ti 278 (697)
+...+.+.. ..+++++.||||||||++|||+|+.+ |++|||||||++||+.++..+.+.|++++++|+|||+++
T Consensus 70 ---~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 70 ---FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred ---HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 333445544 35678899999999999999999999 999999999999999999999999999987899999988
Q ss_pred ecChHHHHhccCEEEEEeCCeE
Q 005423 279 NQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 279 h~~~~~i~~~~D~v~vL~~G~i 300 (697)
|++. ++ +.||++++|++|+.
T Consensus 147 H~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 147 HNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHH-HH-HhCCEEEEECCCCC
Confidence 8874 44 68999999966543
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-33 Score=320.72 Aligned_cols=187 Identities=21% Similarity=0.268 Sum_probs=157.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999884 3469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||++|+. .+++.+||.||+.+... +++.. ..++.+.+|||||||||+|||+|+.+|++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999996 67888999999976421 22322 2356678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEE-EEeCchh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 308 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 308 (697)
|||||+|||+.++..+.+.|+++. | |||+++|++ ..+..+||++++|++ |+++ +.|+.++
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999873 4 788877765 578899999999985 7876 4555443
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=287.40 Aligned_cols=189 Identities=29% Similarity=0.375 Sum_probs=156.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ccEEEEc-CccccCCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVE-RETTLIGS 196 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~-Q~~~l~~~ 196 (697)
...+++|+||.+.+|++++++|+|||||||+||+|+|++.|++ |.|.+||......+ +++++|+ |...+.-.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 3469999999999999999999999999999999999999976 99999998643321 3466664 33333323
Q ss_pred CCHHHHHHH-------------------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005423 197 LTVREYLYY-------------------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~-------------------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~ 257 (697)
+.+.|.+.. ...+.+.+....+.+.||-|||.|+-||.+|+++|+||||||||=|||..++
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 334444322 2345566667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 258 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 258 ~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
.+|.+.|++.. +++.||+.|+|.- +.+.++||||++|+.|+++|.|+.++..+.|.
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999998 4689999987765 68999999999999999999999998877654
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.9e-33 Score=350.15 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||+++|+. ..+.+|+|||++|+|||.+||+|+||||||||+++|+|+++ . +|+|.+||.++..
T Consensus 1217 ~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred eEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999986 3 3999999998643
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH------------HcC-------CCccc----cccCCCCCHHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA------------LLQ-------LPGFF----CQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~------------~l~-------l~~~~----~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.++||||++.+|+. |++|||.... .++ +|+.+ .+....||||||||++|||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 24679999999999975 9999996421 111 22222 223357999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+++|+|||||||||+||..+...|.+.|++.. +++|||+++|... . ...||+|++|++|++++.|+++++++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999875 4789999888864 3 45699999999999999999998864
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.4e-33 Score=319.57 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=156.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 3699999999884 2469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
++|++|+. .+++.+||.|++.+... +++.. ..++.+..|||||||||+|||+|+.+|++||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999986 47888999999976421 22322 2355678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC-CeEE-EEeCch
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 307 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 307 (697)
|||||+|||+.++..+.+.|+++. + |||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999983 3 788877765 578889999999986 5776 445543
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=269.97 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=168.7
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~--- 179 (697)
..+.++||++++. ..++|+++||++.+||+-+|+|||||||||++++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4689999999994 4579999999999999999999999999999999999999875 9999999 44322
Q ss_pred ---CCccEEEEcCccccCCCCCHHHHHHHHHHc---------------------------CCCccccccCCCCCHHHHHH
Q 005423 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALL---------------------------QLPGFFCQRKNGLPCGERRR 229 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l---------------------------~l~~~~~~~~~~LSGGqrqR 229 (697)
.+..||--+|.+..|..+||+|||+.+... ++.+..++....||-||||+
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh
Confidence 234588899999999999999999875321 22222233346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+.|+.-|+++|++|+||||++|+--+...+.-++|+.++. +.+|++ +.|+...+.+++|+|.||++|.+...|+.+++
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilV-VEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILV-VEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEE-EeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 9999999999999999999999999999999999999984 456776 55667899999999999999999999998886
Q ss_pred H
Q 005423 310 L 310 (697)
Q Consensus 310 ~ 310 (697)
-
T Consensus 234 ~ 234 (249)
T COG4674 234 Q 234 (249)
T ss_pred h
Confidence 4
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=321.23 Aligned_cols=190 Identities=21% Similarity=0.297 Sum_probs=159.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..+.++||++.|. .+.+|+|+|+.+++||++||+||||||||||||+|+|+.+|++ |+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------EE
Confidence 4699999999984 3469999999999999999999999999999999999998875 99999742 25
Q ss_pred EEEEcCcc--ccCCCCCHHHHHHHH-------------HHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 184 YGFVERET--TLIGSLTVREYLYYS-------------ALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 184 ~~yv~Q~~--~l~~~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+||++|+. .+.+..|+.+++... ..+.+.. ..++.++.|||||||||+||++|+.+|+||||||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999974 355667888776310 1233432 3456789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
||+|||+.+...+.+.|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..+
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999987 34 888877765 6788999999999999997 8888877543
No 341
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=280.54 Aligned_cols=194 Identities=29% Similarity=0.406 Sum_probs=160.5
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (697)
...+.++|+++.+. ++++|+|+|.+|++||-.+|+|||||||||||++++|..+|++ |.+.+.|+...
T Consensus 29 ~~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcc
Confidence 34699999999884 5689999999999999999999999999999999999999875 99999997632
Q ss_pred --CCCccEEEEcCc--cccCCCCCHHHHHHHH------------------------HHcCCCccccccCCCCCHHHHHHH
Q 005423 179 --MPYGSYGFVERE--TTLIGSLTVREYLYYS------------------------ALLQLPGFFCQRKNGLPCGERRRV 230 (697)
Q Consensus 179 --~~~~~~~yv~Q~--~~l~~~lTV~e~l~~~------------------------~~l~l~~~~~~~~~~LSGGqrqRv 230 (697)
..++.||+|.-+ ....+..+|+|-+.-+ ..+.+.+..++.-..||-||||||
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 234678988643 2233344555554211 122333344566689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 231 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 231 ~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+++||+ +++..-+++++++++|++++.|.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999865 78999999997 58889999999999999999874
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.4e-33 Score=289.74 Aligned_cols=184 Identities=23% Similarity=0.209 Sum_probs=148.6
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (697)
+|+++|.. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|. ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 56677632 235899999 599999999999999999999999999999876 9996 7786542
Q ss_pred CC-------CccEEEEcCccccCCCCCHHHHHHHH--------------HHcCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 179 MP-------YGSYGFVERETTLIGSLTVREYLYYS--------------ALLQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 179 ~~-------~~~~~yv~Q~~~l~~~lTV~e~l~~~--------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
.. ...++|++|+...++. ++.+++.+. ..+++.+..++.+..||||||||++|||+|+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 11 1236888888777763 666665432 1234445556677899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
.+|++++|||||++||+.++..+.+.|++++++++|||+++|++ ..+.++||++++| +|++++.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEE-CCCCCcce
Confidence 99999999999999999999999999999988889999977775 5777899999999 46666544
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-32 Score=261.57 Aligned_cols=151 Identities=32% Similarity=0.522 Sum_probs=134.6
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCc
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYG 182 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~ 182 (697)
++|+++.+++ +.+++++|+.+++||+++|+|+||||||||+++|+|++++.. |+|.++|.+... ..+
T Consensus 2 ~~~~~~~~~~-----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGG-----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 5788888742 369999999999999999999999999999999999998865 999999986532 124
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
.++|++| |||||+||++|||+|+.+|++++|||||+|||..++..+.+
T Consensus 74 ~i~~~~q--------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 74 RIGYVPQ--------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121 (157)
T ss_pred ceEEEee--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 5888888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 263 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 263 ~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
.|+++.+.++|+++++|++ .++...||++++|++|+
T Consensus 122 ~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 122 LLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999987788999988875 57778899999999875
No 344
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.2e-33 Score=263.48 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEecc----cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 005423 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (697)
.++++|+++++... ++....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|.+||++...
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 46788898887543 1234569999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCccEEEEcCccc--cCCCCCHHHHHHHHHH--------------------cC-CCccccccCCCCCHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSAL--------------------LQ-LPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~e~l~~~~~--------------------l~-l~~~~~~~~~~LSGGqrqRv~I 232 (697)
..+.+-.++||+. +.|.+.+.+.|..... .+ +|+..+-+++.||-||||||++
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 2357889999874 4455555444433211 11 3555566778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+.+|+|+|.||...+||...+.+++++.-+|++ .|.+.|.+..| ...+.+++|+|+||++|++|+.|++.+++.
T Consensus 161 ARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh-lG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH-IGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech-hhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 9999999999999999999999999999999999985 58999986554 578999999999999999999999998864
No 345
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-33 Score=294.11 Aligned_cols=198 Identities=24% Similarity=0.340 Sum_probs=168.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
...+.|+++++.|. ..+++|+++|+++.+|+.+||+||||+||||++++|-+.+.+++ |.|.++|+++..
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45689999999999999999999999999999999999998876 999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcccc----ccCCCCCHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFC----QRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~----~~~~~LSGGqrqRv~IA 233 (697)
.++.||.||||..||.+ |...|+.|+. ...+|+.++ ++.-.|||||||||+||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 24679999999999965 9999997752 112444333 23346999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++.+|+||++||.||+||..+.++|...|+++. .|+|.+++.|..+. + --+|+|+||++|+|++.|.-++++.
T Consensus 412 r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999999999999998 46666666787653 3 3599999999999999999988765
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.7e-32 Score=316.28 Aligned_cols=187 Identities=22% Similarity=0.291 Sum_probs=156.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++||++.|. .+.+|+|+|+.+++|++++|+||||||||||||+|+|+++|+. |+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----cE
Confidence 4689999999884 3469999999999999999999999999999999999998875 99998 432 25
Q ss_pred EEEEcCcc-ccCCCCCHHHHHHHHHH-----------------cCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 184 YGFVERET-TLIGSLTVREYLYYSAL-----------------LQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~e~l~~~~~-----------------l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
+||++|+. .+++.+||.|++.+... +.+. ...++.++.|||||||||+||++|+.+|++||
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999975 58888999999976321 1121 12345678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe-CCeEEE-EeCchh
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLF-FGETLA 308 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~-~G~iv~-~G~~~~ 308 (697)
|||||+|||..++..+.+.|+++ +.|||+++|+. ..+..+||++++|+ +|+++. .|+-++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999999886 45888877764 57888999999998 899865 444443
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-32 Score=342.54 Aligned_cols=191 Identities=26% Similarity=0.352 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.++.+ ..+++|+|+|+++++||.++|+||||||||||+++|+|.++|.. |.+. ..++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~-------~~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSV-------VIRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEE-------EecCcE
Confidence 59999999999632 23579999999999999999999999999999999999999864 6552 123579
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++ .|++|||.|+.. + .+|+. ..++...||||||||++|||||..+|+
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999999996 599999987521 1 12322 223456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|||||||+||+.++.++++. ++.+ .+++|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999988765 4443 36789999999874 457899999999999999999888753
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=1.1e-31 Score=314.46 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=153.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|.. |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46999999999842 2369999999999999999999999999999999999999875 99998753 35
Q ss_pred EEEEcCccccCCCCCHHHHHHH--H---------------HHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 184 YGFVERETTLIGSLTVREYLYY--S---------------ALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~--~---------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
++|++|+.. ..+++.++... . ..+++.+ ...+.+..|||||||||+|||+|+.+|++|||
T Consensus 574 igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 574 MAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred EEEEecccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999752 33444444221 1 1223332 34567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
||||+|||+.++..+++.|++. .| |||+++|++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999998888765 34 888877775 5788899999999999998 7787665443
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3e-32 Score=266.32 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=163.1
Q ss_pred EEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----
Q 005423 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----- 181 (697)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----- 181 (697)
.++|+.+.+.......+++|+++|+++..|+++.|+|.||||||||+++|+|.+++++ |+|.++|.++....
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHHh
Confidence 4566666665444456789999999999999999999999999999999999999986 99999999864321
Q ss_pred ccEEEEcCcc--ccCCCCCHHHHHHHHHHc---------------------------CCCccccccCCCCCHHHHHHHHH
Q 005423 182 GSYGFVERET--TLIGSLTVREYLYYSALL---------------------------QLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~e~l~~~~~l---------------------------~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
..++-|+|++ ..++.+|+.||+..+..- ++...++.+..-|||||||-|++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3467789986 578999999999775421 12223344556799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+.|-++.|+||+|||=|++|||.++..|++.-.++.+ .+.|.++++|+. ..+.++-+|.++|++|+||.+-.
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEcc
Confidence 9999999999999999999999999999999999974 567888878875 57889999999999999997643
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=7.7e-32 Score=339.40 Aligned_cols=190 Identities=24% Similarity=0.344 Sum_probs=159.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~~~~~~~ 183 (697)
.++++|+++.++.. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 59999999999632 2356999999999999999999999999999999999999874 5 799864 46
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH------------c-------CCCcc----ccccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL------------L-------QLPGF----FCQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~------------l-------~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
++||+|++.++. .|++|||.|+.. + .+|+. ..++...|||||||||+|||||..+|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999999996 599999987521 1 23322 23445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 HVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 ~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|+|||||||+||+.++.++++ .++.+. +|+|+|+++|+.. ....||+|++|++|++++.|+.+++.+
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998865 555553 5789999999973 567899999999999999999888753
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.98 E-value=9.8e-32 Score=314.32 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=146.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.+ |+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCcE
Confidence 5899999998752 2469999999999999999999999999999999999998875 9998864 3569
Q ss_pred EEEcCccccCCCCCHHHHHHHHH--------------------HcCCCccccc---------cCCCCCHHHHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYSA--------------------LLQLPGFFCQ---------RKNGLPCGERRRVRIARE 235 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~~~~---------~~~~LSGGqrqRv~IA~a 235 (697)
+||+|++.+++. |++||+.+.. .+++.+..++ ....||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999998876 9999997631 0122221122 236899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
|+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999998876 3889999899875 347899999997
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2e-31 Score=310.71 Aligned_cols=184 Identities=21% Similarity=0.323 Sum_probs=145.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.++||+++|. .+.+|+||||.|++||++||+||||||||||||+|+|+++|+. |+|.++|.. .++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~~------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGNW------QLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCCC------EEE
Confidence 68999999984 3579999999999999999999999999999999999998875 999998742 356
Q ss_pred EEcCccccCCCCCHHHHHH------------------------H----------------------HHHcCCC-cccccc
Q 005423 186 FVERETTLIGSLTVREYLY------------------------Y----------------------SALLQLP-GFFCQR 218 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~------------------------~----------------------~~~l~l~-~~~~~~ 218 (697)
|++|+.... ..|+.+.+. + ...+++. ...++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 666643222 123222110 0 0112232 234566
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 219 KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
...|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++++|++|
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999998875 46888877765 5788999999999999
Q ss_pred eEE-EEeCchh
Q 005423 299 NTL-FFGETLA 308 (697)
Q Consensus 299 ~iv-~~G~~~~ 308 (697)
+++ |.|+.+.
T Consensus 223 ~i~~~~g~~~~ 233 (638)
T PRK10636 223 SLFEYTGNYSS 233 (638)
T ss_pred EEEEecCCHHH
Confidence 996 5666544
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.7e-31 Score=336.23 Aligned_cols=190 Identities=21% Similarity=0.290 Sum_probs=162.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|.+++.. |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 6999999999853 13469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------cC-------CCc----cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------LQ-------LPG----FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l~-------l~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++ .||+||+.++.. +. +|. ...++...||||||||++|||||+.+|+
T Consensus 702 ~yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 702 AYVPQQAWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEcCCccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998874 699999986421 11 121 1234567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|++||||||+||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999999999997642 35789999999874 34 5599999999999999999888753
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4.3e-31 Score=308.25 Aligned_cols=185 Identities=20% Similarity=0.239 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||+++|. .+.+|+||||.+++||+++|+||||||||||||+|+|+.+|+. |+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~~------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQDL------IV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCCC------EE
Confidence 489999999984 3469999999999999999999999999999999999998875 999998731 24
Q ss_pred EEEcCccccCCCCCHHH------------------------------HHHHHH-----------------------HcCC
Q 005423 185 GFVERETTLIGSLTVRE------------------------------YLYYSA-----------------------LLQL 211 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e------------------------------~l~~~~-----------------------~l~l 211 (697)
+|++|.+......+|.+ ++.... .+++
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 45554332111122222 221100 1112
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
. .++....|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+. ..+.++||+
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l~~~~d~ 222 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFIRNMATR 222 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHHHHhcCe
Confidence 1 245678999999999999999999999999999999999999999999999873 4888877765 578889999
Q ss_pred EEEEeCCeEE-EEeCchhh
Q 005423 292 ICLLSNGNTL-FFGETLAC 309 (697)
Q Consensus 292 v~vL~~G~iv-~~G~~~~~ 309 (697)
|++|++|+++ +.|+.++.
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 9999999997 45776554
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.4e-31 Score=263.46 Aligned_cols=200 Identities=21% Similarity=0.235 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecc-------------------cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 005423 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (697)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~ 165 (697)
.+.++||++.++.. +.....+|+||||++++||.++|+|+||||||||||+|+|.++|+.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 46777887776421 1123569999999999999999999999999999999999999986
Q ss_pred ceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHc-------------------CCCccccccCCCCCHHH
Q 005423 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-------------------QLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 166 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-------------------~l~~~~~~~~~~LSGGq 226 (697)
|+|.++|+-....--.. .+-|++|.+||+.+...+ .+.++.+.+.+.+|-||
T Consensus 82 --G~v~v~G~v~~li~lg~-------Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM 152 (249)
T COG1134 82 --GKVKVTGKVAPLIELGA-------GFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGM 152 (249)
T ss_pred --ceEEEcceEehhhhccc-------CCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHH
Confidence 99999997432111112 345678999999875432 23445667779999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+-|++.|.|...+|+|||+||-.+-.|+.-++.-.+.++++.++++|+|+++|++ ..+.++||++++|++|++.+.|++
T Consensus 153 ~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 153 YARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred HHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCH
Confidence 9999999999999999999999999999999999999999988889999988776 589999999999999999999999
Q ss_pred hhhHHhhhh
Q 005423 307 LACLQHFSN 315 (697)
Q Consensus 307 ~~~~~~f~~ 315 (697)
+++.++++.
T Consensus 232 ~~vi~~Y~~ 240 (249)
T COG1134 232 EEVIPAYEE 240 (249)
T ss_pred HHHHHHHHH
Confidence 999987765
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.9e-31 Score=248.13 Aligned_cols=198 Identities=26% Similarity=0.335 Sum_probs=157.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE--- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~--- 178 (697)
.+.++++++.|. ..+.-+||||.+.|||+++|+|+|||||||||++|+++++|+. |+|.+.-.+ .+
T Consensus 6 LL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHhh
Confidence 578899998884 3457899999999999999999999999999999999999986 999886432 11
Q ss_pred ---C-----CCccEEEEcCccc--cC----CCCCHHHHHHHH-----------H--H---cCC-CccccccCCCCCHHHH
Q 005423 179 ---M-----PYGSYGFVERETT--LI----GSLTVREYLYYS-----------A--L---LQL-PGFFCQRKNGLPCGER 227 (697)
Q Consensus 179 ---~-----~~~~~~yv~Q~~~--l~----~~lTV~e~l~~~-----------~--~---l~l-~~~~~~~~~~LSGGqr 227 (697)
. .+..-|+|.|++. +- ....+-|-+.-. + + ..+ +...+..++.+|||++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 0 1123589999863 21 122344443211 1 1 112 2234677899999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 228 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 228 qRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||+.|||-|++.|+++|+||||-|||...+..++++++.|. +-|.++++++|+. ..+.-++||.++|++|++++.|-+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEeccccc
Confidence 99999999999999999999999999999999999999998 4588888877764 566778999999999999999999
Q ss_pred hhhHH
Q 005423 307 LACLQ 311 (697)
Q Consensus 307 ~~~~~ 311 (697)
+.+++
T Consensus 237 DrvLD 241 (258)
T COG4107 237 DRVLD 241 (258)
T ss_pred ccccc
Confidence 88765
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.3e-30 Score=327.59 Aligned_cols=184 Identities=24% Similarity=0.388 Sum_probs=154.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++|+++. .+++|+|+|+++++||+++|+|||||||||||++|+|++++.. |+|.++| .++
T Consensus 429 ~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~ia 490 (1490)
T TIGR01271 429 LFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RIS 490 (1490)
T ss_pred ccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EEE
Confidence 556665543 2469999999999999999999999999999999999999875 9999988 389
Q ss_pred EEcCccccCCCCCHHHHHHHHHH------------cCC-------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 186 FVERETTLIGSLTVREYLYYSAL------------LQL-------PG----FFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
||+|++.+++. ||+||+.|+.. +++ +. ...++...|||||||||+|||||+.+|++
T Consensus 491 yv~Q~~~l~~~-Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i 569 (1490)
T TIGR01271 491 FSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL 569 (1490)
T ss_pred EEeCCCccCCc-cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 99999999874 99999987421 111 11 12334578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+||||||+|||+.++..+.+. ++++. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 570 llLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 570 YLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999984 66665 5899999999875 44 5699999999999999999888753
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.3e-30 Score=300.42 Aligned_cols=177 Identities=22% Similarity=0.210 Sum_probs=144.5
Q ss_pred EEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 005423 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM 179 (697)
Q Consensus 111 ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~ 179 (697)
+++.|. ....+|++++ .+++||+++|+||||||||||+|+|+|+++|+. |+|. ++|++...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHH
Confidence 555552 1235899999 999999999999999999999999999999876 9997 88876421
Q ss_pred -------CCccEEEEcCc----cccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 -------PYGSYGFVERE----TTLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 -------~~~~~~yv~Q~----~~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
....+++.+|. +.++. .||.|++... ..+++....++...+|||||||||+||++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 11234555554 33332 3999988542 13455555678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..++|++++|++|
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988 99999977775 5788999999999864
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=312.84 Aligned_cols=204 Identities=23% Similarity=0.353 Sum_probs=180.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..+..+|+++.+... +.+++++|+.|++||+.+++|+|||||||++|+|.|..+|++ |++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 458899999888532 129999999999999999999999999999999999999986 999999987543
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHHHcC-------------------CCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ-------------------LPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~-------------------l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+||+||+|.+.+.+|.+|+|.+.++++ +.+..++..+.+|||+|||+++|.||+.
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 3567999999999999999999998876543 2233455668999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+|++++|||||+|+||.+++.+.+++++++++|+.||+|+|. .+|...+|||+.+|.+|++...|+++++...|-.
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 999999999999999999999999999999988888987665 5799999999999999999999999999876643
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=241.95 Aligned_cols=172 Identities=24% Similarity=0.374 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||+...+ ...+|.|+|++|.+||++.||||||||||||+..+.|.+.+.-..+|++.+|++.... .+
T Consensus 2 ~l~l~nvsl~l~-----g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLP-----GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCC-----CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 368899987653 4579999999999999999999999999999999999988765678999999997643 35
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
+++|..+||+.+||+++|.+||.|+. ..++.+..++.+.+||||||-||++-|+|+..|+.+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 78999999999999999999997742 123555667788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEecC
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQS 281 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~tih~~ 281 (697)
+||||+|.||..-+.++.+.+-. +.+.|.-+|.++|+.
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999988754 446788777777764
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-30 Score=248.94 Aligned_cols=170 Identities=25% Similarity=0.319 Sum_probs=146.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (697)
++.+|++..- ....++.++||++.+||.+-|.||||||||||||+|+|+..|.+ |+|.++|.+++..+
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4556666542 45689999999999999999999999999999999999999986 99999998765433
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
..+-|+-.++.+=+.+||.|||.|-.. .++.+..+.+..+||-||||||+|||-+++.+++-||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 356777788888889999999998543 3344555667789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
|||+++||......+-.++..-+++|..||.++|||..
T Consensus 155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999888889999999999974
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.1e-29 Score=319.48 Aligned_cols=176 Identities=24% Similarity=0.344 Sum_probs=147.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|.. |+|.++ +.++|++|++.++ ..||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999998875 999874 4599999999887 469999
Q ss_pred HHHHHHH------------cC-------C----CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 005423 202 YLYYSAL------------LQ-------L----PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 202 ~l~~~~~------------l~-------l----~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~ 258 (697)
|+.+... ++ + .....++...|||||||||+|||||+.+|+|+||||||++||+.++.
T Consensus 740 nI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~ 819 (1560)
T PTZ00243 740 NILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819 (1560)
T ss_pred HHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 9976310 11 1 11224566889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+++.+.....+|+|+|+++|++. .+ +.||+|++|++|++++.|+.+++.+
T Consensus 820 ~i~~~~~~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 820 RVVEECFLGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 988754322335899999899874 34 6799999999999999999888653
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.8e-29 Score=281.16 Aligned_cols=183 Identities=27% Similarity=0.363 Sum_probs=153.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.+. .+.+++|+|+++.+|+.+||||+||||||||||+|+|...|+. |+|...+. ..+
T Consensus 3 ~i~~~~ls~~~g-----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAYG-----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEeeC-----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 589999999983 5689999999999999999999999999999999999998876 99987542 358
Q ss_pred EEEcCccccCCCCCHHHHHHHHH-------------------------------------------------HcCCCccc
Q 005423 185 GFVERETTLIGSLTVREYLYYSA-------------------------------------------------LLQLPGFF 215 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~-------------------------------------------------~l~l~~~~ 215 (697)
+|++|++.+.+..||.+.+.-+. .++.+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999998889988764321 0112222
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
++...+||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+++| ++..+-+.|++|+-+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSH-DR~FLd~V~t~I~~l 223 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSH-DRYFLDNVATHILEL 223 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeC-CHHHHHHHhhheEEe
Confidence 4566899999999999999999999999999999999999999999999864 45 8888555 567899999999999
Q ss_pred eCCeEE-EEeCc
Q 005423 296 SNGNTL-FFGET 306 (697)
Q Consensus 296 ~~G~iv-~~G~~ 306 (697)
+.|++. |.|.-
T Consensus 224 d~g~l~~y~Gny 235 (530)
T COG0488 224 DRGKLTPYKGNY 235 (530)
T ss_pred cCCceeEecCCH
Confidence 999875 44443
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=3.3e-29 Score=256.42 Aligned_cols=180 Identities=22% Similarity=0.209 Sum_probs=123.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHH-HHHHcCC--------CCCC-CceeEEEECCEeCCCCCccEEEEcCcc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRL--------PHSA-RMYGEVFVNGAKSEMPYGSYGFVERET 191 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl-~~L~G~~--------~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~ 191 (697)
...+|++||+++++||+++|+||||||||||+ ..+...- ++.. ...|.+.... .........++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPD-VDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccc-cccccCCCceEEecCC
Confidence 34699999999999999999999999999996 4433100 0000 0001110000 0000001123333332
Q ss_pred c--cCCCCCHH---HHHHH----------------HHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeC
Q 005423 192 T--LIGSLTVR---EYLYY----------------SALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP--HVLFIDE 247 (697)
Q Consensus 192 ~--l~~~lTV~---e~l~~----------------~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDE 247 (697)
. +.+..+|. +...+ ...+++.. ..++++++|||||||||+|||+|+.+| ++|||||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE 165 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE 165 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 1 12233332 11111 11234443 356788999999999999999999998 5999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G 304 (697)
||+|||+.++..+.+.|++++++|.|+|+++|++. ++ +.||++++| ++|+||++|
T Consensus 166 Pt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 166 PSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999888999999999874 45 689999999 999999876
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=2.9e-29 Score=294.22 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=143.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..+.++|++++|. .+.+|+|+|+++.+|+.+||+|+||||||||||+|+|+...+....|+|.+.++.....
T Consensus 176 ~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4599999999994 34699999999999999999999999999999999996411111238887654321000
Q ss_pred ----------------CccEEEEcCccccCCC----------------CCHHHHH----H-H---------------HHH
Q 005423 181 ----------------YGSYGFVERETTLIGS----------------LTVREYL----Y-Y---------------SAL 208 (697)
Q Consensus 181 ----------------~~~~~yv~Q~~~l~~~----------------lTV~e~l----~-~---------------~~~ 208 (697)
...+++++|++.+... ..+.+.+ . + ...
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0124556654322110 0000111 0 0 011
Q ss_pred cCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 209 LQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 209 l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
++++ ...++....|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+++|+. ..+.+
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~~l~~ 406 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-EFLNT 406 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHH
Confidence 2332 2235667899999999999999999999999999999999999999999999886 67899877764 67888
Q ss_pred ccCEEEEEeCCeEE-EEeCchh
Q 005423 288 LFDRICLLSNGNTL-FFGETLA 308 (697)
Q Consensus 288 ~~D~v~vL~~G~iv-~~G~~~~ 308 (697)
+||++++|++|+++ |.|+.++
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999996 6666554
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.3e-28 Score=294.93 Aligned_cols=199 Identities=23% Similarity=0.343 Sum_probs=169.0
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
...++++|+++.|.. +...+|||||++|+|||.+||+|..|||||||+++|-++..+.+ |+|.|||.++..
T Consensus 1136 ~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGL 1209 (1381)
T ss_pred CCeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccH
Confidence 346999999999953 35689999999999999999999999999999999999998865 999999998643
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHH----H--------HHc-------CCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYY----S--------ALL-------QLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~----~--------~~l-------~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
.+++++.+||||.+|. .|||.||.= + ..+ ++|. ...+....+|-||||-++|||
T Consensus 1210 ~dLRsrlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred HHHHhcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence 3578999999999995 599999831 1 011 2232 334455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+++.+||+|||+|++.|+++-..|.++||+-- +++|||.+.|.-. .+. -+|||+||++|+++++|+|.++++
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999999999999854 4789998778764 443 499999999999999999999876
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.2e-28 Score=294.98 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=165.0
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|.+++.+.. ...+.|+|||+.+++|+++||+|+-|||||+||.+|.|-++.. +|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe-------
Confidence 3468999999987542 3445999999999999999999999999999999999999865 499999985
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH------------cCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL------------LQLPGF-----------FCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++||+|++-++. .||+||+.|+.. |.|..+ ..++.-.||||||||+++|||+-++
T Consensus 584 -iaYv~Q~pWI~n-gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQN-GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred -EEEeccccHhhC-CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 899999999985 599999988642 222211 2345578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.+|.+||.|.|++|+++..+|.+-.-+..-+++|+|++|||- +..+.||.|++|++|+|++.|+.+|+.
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 999999999999999999998877665555689999999974 677889999999999999999999987
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=232.15 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=149.7
Q ss_pred eEEEEeEEEEEecc--cccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 005423 105 SVVWKDLTVTIKGK--RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE-- 178 (697)
Q Consensus 105 ~l~~~~ls~~~~~~--~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~--~~-- 178 (697)
.+..+|+++++.-. ..-..++|+|||+.++.||++++=||||+|||||||+|-|-+.|++ |+|.+.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhh
Confidence 57888888777422 2234579999999999999999999999999999999999998886 999985432 11
Q ss_pred ---------CCCccEEEEcCccccCCCCCHHHHHHH-------------------HHHcCCCcc-ccccCCCCCHHHHHH
Q 005423 179 ---------MPYGSYGFVERETTLIGSLTVREYLYY-------------------SALLQLPGF-FCQRKNGLPCGERRR 229 (697)
Q Consensus 179 ---------~~~~~~~yv~Q~~~l~~~lTV~e~l~~-------------------~~~l~l~~~-~~~~~~~LSGGqrqR 229 (697)
..++.+|||.|--...|..+..|...- -..+++|+. ..-.+...||||+||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 123568999998777776554444322 123455553 345678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 230 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 230 v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
|.|||.++.+-+||+|||||+.||..++..+++++++-+..|..+|=+-| +.+.-...|||++-+..
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH-Deevre~vadR~~~~~~ 227 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH-DEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec-cHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999998888988887555 44455568999998753
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=8.8e-28 Score=240.74 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=126.7
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CCccEEEEcCccccCCC--
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS------ARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGS-- 196 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~------~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~-- 196 (697)
+++++.+.+| +++|+||||||||||+++|+|++++. ....|++.++|++... ..+.+++|+|++..+..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6788899999 99999999999999999999997653 1123577777765422 23579999998866411
Q ss_pred --CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 197 --LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 197 --lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
..+.|.+.. .+..++.+..||||||||++||++|+ .+|++++|||||+|||+..+..+.+.|+++++
T Consensus 93 ~~~~~~~~l~~------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~- 165 (197)
T cd03278 93 SQGDVSEIIEA------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK- 165 (197)
T ss_pred ehhhHHHHHhC------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-
Confidence 123333322 44456778999999999999999997 46699999999999999999999999999975
Q ss_pred CCEEEEEEecChHHHHhccCEEEEEe
Q 005423 271 GCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 271 g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+.|||+++|++. . .+.||+++.+.
T Consensus 166 ~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 166 ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 688999888864 4 46899999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3e-27 Score=245.72 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=140.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-----c---CC--CCC--CCce------eEEEECCEeCCC-CC--
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-----G---RL--PHS--ARMY------GEVFVNGAKSEM-PY-- 181 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-----G---~~--~~~--~~~~------G~I~i~G~~~~~-~~-- 181 (697)
...|+||+..++.|++++|.|+||||||||++.+. . .. .+. .... --|.++..++.. ++
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998552 1 10 011 0111 235666544311 00
Q ss_pred ----------------------------ccEEEEcCccccCCCCCHHHHHHHHHH-------------cCCCc-cccccC
Q 005423 182 ----------------------------GSYGFVERETTLIGSLTVREYLYYSAL-------------LQLPG-FFCQRK 219 (697)
Q Consensus 182 ----------------------------~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~l~~-~~~~~~ 219 (697)
..+.|..++......+||.|++.|... +++.. ..++..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~ 167 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPA 167 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcc
Confidence 013455555555678999999977532 34544 356778
Q ss_pred CCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE-
Q 005423 220 NGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL- 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL- 295 (697)
..||||||||++||++|+.+ |+++||||||+|||+.....+++.|++++++|.|||+++|++. .+ +.||++++|
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lg 245 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLG 245 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEec
Confidence 99999999999999999996 7999999999999999999999999999988999999888874 44 579999999
Q ss_pred -----eCCeEEEEeCc
Q 005423 296 -----SNGNTLFFGET 306 (697)
Q Consensus 296 -----~~G~iv~~G~~ 306 (697)
++|++++.|++
T Consensus 246 p~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 246 PEGGDGGGQVVASGTP 261 (261)
T ss_pred CCcCCCCCEEEEeCCC
Confidence 89999999874
No 371
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=6e-28 Score=226.83 Aligned_cols=122 Identities=37% Similarity=0.574 Sum_probs=103.1
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCCCCCHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
|+|||+++++||+++|+|+||||||||+++|+|..++.. |+|.++|.+... .++.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS---GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE---EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc---cccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999998754 999999998754 235799999999999999999
Q ss_pred HHHHH------HHHcCCCcc----ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005423 201 EYLYY------SALLQLPGF----FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY 250 (697)
Q Consensus 201 e~l~~------~~~l~l~~~----~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 250 (697)
|+..- ...+++... .++....|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98421 122333222 233448999999999999999999999999999996
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=9.7e-27 Score=262.55 Aligned_cols=191 Identities=26% Similarity=0.298 Sum_probs=155.2
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
....++++|+++.|.+ .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|.+ |+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~---G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC---ceEEeCCc------
Confidence 3457999999999853 2579999999999999999999999999999999999988764 99987432
Q ss_pred ccEEEEcCcc-ccCCCCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERET-TLIGSLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~-~l~~~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
-.+||..|+. .+.+..|+.|++.-.. .+.+++ ...++.+.||||||.||.+|+.++.+|.+||||
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence 3589999986 4457779999885432 122222 234566899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEE-eCchhhH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLACL 310 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~~ 310 (697)
|||++||..+...+.+.|.+.. .|||+++|+ ...+..+|++++++.+ ++..+ |.-++..
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDFE---GTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhCC---CeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999998864 478876665 5689999999999998 55444 6655443
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.2e-26 Score=237.54 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=124.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC----------------CCCC---Ccee--EEEECCEeCC--
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL----------------PHSA---RMYG--EVFVNGAKSE-- 178 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~----------------~~~~---~~~G--~I~i~G~~~~-- 178 (697)
.+.++++++ |++++|+||||||||||+++|++++ .++. ...+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 346777876 7899999999999999999998442 2221 0112 5555553211
Q ss_pred ---C---CCccEEEEcCccccCC-CCCHHHHHHHHHHcCCCc--------------------cccccCCCCCHHHHHHHH
Q 005423 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPG--------------------FFCQRKNGLPCGERRRVR 231 (697)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~e~l~~~~~l~l~~--------------------~~~~~~~~LSGGqrqRv~ 231 (697)
. ..+.+++++|+..+.+ ..|..|...+...+++.. ..++.+..||||||||++
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~ 168 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVA 168 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHH
Confidence 1 1245899999887776 457777766665554432 123566899999999999
Q ss_pred HHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 232 IARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 232 IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
|||+|+. +|+++|+||||+|||+.++..+++.|+++++ ++++|+++|. .++.++||++++|.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~--~~~~~~~d~i~~l~ 234 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR--PELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC--HHHHhhCCEEEEEE
Confidence 9999974 5899999999999999999999999999875 7777775554 36789999999995
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.5e-26 Score=249.00 Aligned_cols=192 Identities=23% Similarity=0.348 Sum_probs=159.9
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.+.++++|++.. ..++||||++++||+++|-|-=|||+|-|+++|.|..++.+ |+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~---G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC---ceEEECCEEccCCCH
Confidence 345778887642 25899999999999999999999999999999999877654 9999999975432
Q ss_pred ----CccEEEEcCc---cccCCCCCHHHHHHHHHHcCCCc--c-----------------------ccccCCCCCHHHHH
Q 005423 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLPG--F-----------------------FCQRKNGLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~e~l~~~~~l~l~~--~-----------------------~~~~~~~LSGGqrq 228 (697)
...++||+.| ..++..++|.+|+.++...+... . .+.....||||.+|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 2358999976 56888999999997763222110 0 12234789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 307 (697)
+|.|||.|..+|+||||||||.|.|.-+..+|.+++++|+++|++||++++. .+|+..+||||+||++|+++..=+.+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-LPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999996555 57999999999999999998754444
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=3e-25 Score=225.12 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=130.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEc-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE----eCCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----KSEM 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~-~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~----~~~~ 179 (697)
.++++|+. .|.+ -++++|... +|++++|+||||||||||+++|++.+-.. ..+....+.. ....
T Consensus 5 ~i~l~nf~-~y~~--------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE--------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCC--------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 46777766 4421 145566543 58999999999999999999999643111 1122222210 1112
Q ss_pred CCccEEEEcCcccc------CCCCCHHHHHHHH--HHcCCCccccccCCCCCHHHHHHHHHHHHHhh----------CCC
Q 005423 180 PYGSYGFVERETTL------IGSLTVREYLYYS--ALLQLPGFFCQRKNGLPCGERRRVRIARELVM----------RPH 241 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l------~~~lTV~e~l~~~--~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~----------~P~ 241 (697)
....+++++|++.. ...++..+..... ...++....++.+..||||||||++|||+|+. +|+
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~ 153 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLE 153 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCC
Confidence 23457888876533 2344544443321 11223344567788999999999999999985 578
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
++||||||++||+.+...+.+.|+++++++.|+|+++|++ ..+...+|+++++++|.
T Consensus 154 ~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 154 ALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999999999999999999999987799999988876 57788999999999885
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.1e-25 Score=226.71 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=125.2
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCccEEEEcCcc-----ccCCCCC
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSLT 198 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~----G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~-----~l~~~lT 198 (697)
++.+.+| +++|+|||||||||||++|. |..+++. |.+..+.... ......+++++|++ .....+|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 8877653 5444111111 12234688888887 4455668
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHc-
Q 005423 199 VREYLYYSALLQLPGFFCQRKNGLPCGERRR------VRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKKLAST- 270 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~~~~~~~~LSGGqrqR------v~IA~aL~~~P~iLlLDEPTsgLD~~~~~-~i~~~L~~l~~~- 270 (697)
+.|++.+...-+.....++.++.||+||||| ++||++|+.+|+++++||||++||+.++. .+.+.|++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~ 172 (204)
T cd03240 93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172 (204)
T ss_pred HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 9999865422122223356778999999996 78999999999999999999999999999 999999999876
Q ss_pred CCEEEEEEecChHHHHhccCEEEEEe-CC
Q 005423 271 GCTLLFTINQSSTEVFGLFDRICLLS-NG 298 (697)
Q Consensus 271 g~tvi~tih~~~~~i~~~~D~v~vL~-~G 298 (697)
|.|||+++|++. ....||+++.|. +|
T Consensus 173 ~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 173 NFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred CCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 889999899863 446799999995 44
No 377
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.5e-26 Score=219.50 Aligned_cols=192 Identities=25% Similarity=0.352 Sum_probs=155.0
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
+.++|+... .-|-.+|+.+..||++-++|||||||||||-.++|++|.. |+|.++|.+.+..
T Consensus 4 ~qln~v~~~---------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~eL 70 (248)
T COG4138 4 MQLNDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATEL 70 (248)
T ss_pred eeecccccc---------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhHH
Confidence 566666653 2467789999999999999999999999999999998753 9999999875432
Q ss_pred CccEEEEcCccccCCCCCHHHHH-------------HH-HHHcCCCccccccCCCCCHHHHHHHHHHHHHhh-----CC-
Q 005423 181 YGSYGFVERETTLIGSLTVREYL-------------YY-SALLQLPGFFCQRKNGLPCGERRRVRIARELVM-----RP- 240 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l-------------~~-~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~-----~P- 240 (697)
.+.-+|..|+..-...+.|...| .. +..+++.+...+..++|||||-|||-+|...+. ||
T Consensus 71 ArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 71 ARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred HHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 13346666653322233444443 32 345678888888899999999999999987764 44
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 241 -HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 241 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
++|++|||.++||...+..+-++|.+++..|.+||++.|+. ....+.+|++.+|+.|++...|..+|+++
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 69999999999999999999999999999999999977765 56778999999999999999999999874
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=6.1e-26 Score=229.95 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=115.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCcc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~ 183 (697)
.++++|.. +| ..+.+++++++ ++++|+||||||||||+++|.-.. |.+... ..+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------------G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------------GFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------------ccCHHHhhhhh
Confidence 35666654 33 24568888886 899999999999999999998221 110000 0122
Q ss_pred EEEEcCccccCCCCCHHHHHHHH-----------------------------HHcCCCccccccCCCCCHHHHHHHHHHH
Q 005423 184 YGFVERETTLIGSLTVREYLYYS-----------------------------ALLQLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~-----------------------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
+++++|+..+.+.+|++|.+.+. ...++++..+++...||+|||||++||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 34444444333333333322111 1123344445566899999999999999
Q ss_pred HHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 235 ELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 235 aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+++. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|..
T Consensus 141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9974 4799999999999999999999999999865 45666667774 67889999999963
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=226.75 Aligned_cols=198 Identities=24% Similarity=0.302 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM-- 179 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~-- 179 (697)
...++++||++.-. .....+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccCC
Confidence 45799999998642 22578999999999999999999999999999999999987754 9999999985 21
Q ss_pred C----CccEEEEcCcc---ccCCCCCHHHHHHHHHHcCC-----C----------------------ccccccCCCCCHH
Q 005423 180 P----YGSYGFVERET---TLIGSLTVREYLYYSALLQL-----P----------------------GFFCQRKNGLPCG 225 (697)
Q Consensus 180 ~----~~~~~yv~Q~~---~l~~~lTV~e~l~~~~~l~l-----~----------------------~~~~~~~~~LSGG 225 (697)
+ ...++|||.|. .+.+.+|+.||+.+...-.- . .....+.+.||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 1 24689999875 57788999999976542110 0 0111233789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++ +..+.+|++.+||||.||.+|+++...+
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLL-iS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL-ISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEE-EehhHHHHHHhhheeeeeeCCceecccc
Confidence 999999999999999999999999999999999999999999999999999 4566789999999999999999998888
Q ss_pred chh
Q 005423 306 TLA 308 (697)
Q Consensus 306 ~~~ 308 (697)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 765
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=235.58 Aligned_cols=176 Identities=24% Similarity=0.339 Sum_probs=142.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.-+. ....|++.++.+++||-+.|.||||||||||+|+|+|+-|-+. |+|..- ....
T Consensus 391 ~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADSA 457 (604)
T ss_pred ceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCCc
Confidence 57999999998763 3489999999999999999999999999999999999999765 877543 2245
Q ss_pred EEEEcCccccCCCCCHHHHHHHHH---------------HcCCCcc------ccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 184 YGFVERETTLIGSLTVREYLYYSA---------------LLQLPGF------FCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~~~------~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+-|+||.+.+... |.+|-+.|.. .++|++. .++-.+.||+||||||++||.|+++|++
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 7899999987654 9999887642 1223222 1223478999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
++|||.|++||+.++..++++|++-. .+.|||-+.|.+ .+..+.++.+-+.
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999999999999999998743 478888888876 4566777766553
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=8.1e-24 Score=219.93 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=115.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCccEEEEcCcc---------ccCCCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (697)
..+++|+||||||||||+++|++++.+.. .|++...|. +. ......+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 55999999999999999999999987541 256766654 21 11223678888874 1223344
Q ss_pred HHHHHHH---------------------HHHcCCC--------------------ccccccCCCCCHHHHHHHHHHHHHh
Q 005423 199 VREYLYY---------------------SALLQLP--------------------GFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 199 V~e~l~~---------------------~~~l~l~--------------------~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
|.+++.. ...+++. +..++.+.+||||||||++||++|+
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 4433311 1222332 1223567899999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 238 ----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 238 ----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+|+++++||||++||+.++..+.+.|++++ +|.|+|+++|. .++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC--HHHHHhCCEEEEEE
Confidence 5789999999999999999999999999996 48899998888 46778899999875
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=1.1e-22 Score=251.73 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=98.0
Q ss_pred cCCCCCHHHHHHHHH---------------------HcCCCcc-ccccCCCCCHHHHHHHHHHHHHh---hCCCEEEEeC
Q 005423 193 LIGSLTVREYLYYSA---------------------LLQLPGF-FCQRKNGLPCGERRRVRIARELV---MRPHVLFIDE 247 (697)
Q Consensus 193 l~~~lTV~e~l~~~~---------------------~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~---~~P~iLlLDE 247 (697)
.+...||.|+|.++. .+++... .++...+|||||||||+||++|+ .+|++|||||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDE 838 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDE 838 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 345678888875431 1234333 46677899999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe------CCeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 311 (697)
||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||++++|. +|++++.|+++++..
T Consensus 839 PTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 839 PTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999988999999888764 55 8999999996 799999999988753
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=1.9e-22 Score=240.63 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHH-------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHH
Q 005423 196 SLTVREYLYYSAL-------------LQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~ 258 (697)
.+||.|++.|... +++.. ..++....||||||||+.||++|+.+| +++||||||+|||+....
T Consensus 791 ~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 791 DMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred cCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 3789999887532 23332 245677899999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
.+++.|+++.++|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++.+
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999988999999888874 44 579999999 7999999999988754
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=6.8e-22 Score=235.49 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHH-------------cCCCc-cccccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHH
Q 005423 196 SLTVREYLYYSAL-------------LQLPG-FFCQRKNGLPCGERRRVRIARELVM---RPHVLFIDEPLYHLDSVSAL 258 (697)
Q Consensus 196 ~lTV~e~l~~~~~-------------l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~---~P~iLlLDEPTsgLD~~~~~ 258 (697)
.+||.|.+.|... +++.. ..++....|||||+||+.||++|+. +|+++||||||+|||+..+.
T Consensus 789 ~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~ 868 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 868 (924)
T ss_pred CCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHH
Confidence 4577888776543 22322 2456778999999999999999997 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhh
Q 005423 259 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 309 (697)
Q Consensus 259 ~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 309 (697)
.+++.|+++.++|.|||+++|++. .+ +.||++++| ++|++++.|+++++
T Consensus 869 ~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 869 KLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999988999999888864 45 579999999 79999999998764
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.5e-23 Score=216.16 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=148.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+.|.|... .-=+..||+++++||++-|+|.||||||||+++|.|+..|++ |+|.+||++++..
T Consensus 322 ~lelrnvrfay~~~----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQDN----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCcc----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 58999999998632 245788999999999999999999999999999999999986 9999999986532
Q ss_pred -CccEEEEcCccccCCCCCHH------HHHHHH-HHcCCCcc---cc--ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 181 -YGSYGFVERETTLIGSLTVR------EYLYYS-ALLQLPGF---FC--QRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~------e~l~~~-~~l~l~~~---~~--~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
++-++-|+.|..+|+.+--. +++..- ..+.+... .+ -..-.||.|||||+++-.||+-+-+|+++||
T Consensus 395 YR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred HHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence 23355566666666543211 222211 11222111 11 1235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 248 PLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~-~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
=-+.-||.-+..+.+.+- .+++.|+||+.++|++ .-|..+||++.+++|++++.-
T Consensus 475 WAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999887665 5678899999988876 468899999999999998754
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=219.95 Aligned_cols=195 Identities=25% Similarity=0.266 Sum_probs=132.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Ccc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~ 183 (697)
.+.+.|+++++. +..+++|+++.+.+|+-.+|+|+|||||||+|++|.|...|.... =.++.-.+..... ...
T Consensus 75 dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~-~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH-IDFYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc-cchhhhcccCCCchHHH
Confidence 588999999885 457999999999999999999999999999999999998774311 1122222111100 000
Q ss_pred EEEEc-------------------C-cc-ccCCCCCHHHHHHH----------H----HHcCCCccccccCCCCCHHHHH
Q 005423 184 YGFVE-------------------R-ET-TLIGSLTVREYLYY----------S----ALLQLPGFFCQRKNGLPCGERR 228 (697)
Q Consensus 184 ~~yv~-------------------Q-~~-~l~~~lTV~e~l~~----------~----~~l~l~~~~~~~~~~LSGGqrq 228 (697)
+-++. + ++ ..-...+..+-+.. + ....+++...+...++|||+|.
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 10110 0 00 00000011111100 0 0011233344566899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe-EEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN-TLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~-iv~~G~~~ 307 (697)
|++|||+|..+|++|+|||||+|||..+..-+-+.|.+.-+. ++++ +.|+.+.+-.+|.+|+-|.+++ +.|.|+-+
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi-~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVI-VSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEE-EecchhhhhhHhhhhheecccceeeecCCHH
Confidence 999999999999999999999999999999999888876432 4555 4455678889999999999999 55556655
Q ss_pred h
Q 005423 308 A 308 (697)
Q Consensus 308 ~ 308 (697)
.
T Consensus 306 q 306 (614)
T KOG0927|consen 306 Q 306 (614)
T ss_pred H
Confidence 4
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=9.7e-22 Score=210.12 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=136.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++|.++++++. ..-|.-=.+.+..||+++++||||-||||+.++|+|.++|++ |. . ..-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~-----~~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----E-----EDLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----C-----ccce
Confidence 3466777766653 234555567888999999999999999999999999999986 65 1 1124
Q ss_pred EEEEcCccccCCCCCHHHHHHHHHH---------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYSAL---------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~~~---------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++|-||--.--...||.+.|.-... +++...++++..+|||||.|||+||.+|..++++.+||||
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 7888886444456799998854321 3344556778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEe
Q 005423 249 LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
++.||++.+..+-+.++++.++ ++|.+++ .|+...+--++||++|..
T Consensus 483 SA~LDvEqR~~vakvIRR~~e~~~kta~vV-dHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 483 SAYLDVEQRIIVAKVIRRFIENNEKTALVV-DHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCceEEEE-ecceehhhhhhceEEEEe
Confidence 9999999999999999999954 5677764 445556667899998764
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.8e-21 Score=195.27 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=114.6
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe------CCCCCccEEEEcCccccCCC-
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV--NGAK------SEMPYGSYGFVERETTLIGS- 196 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i--~G~~------~~~~~~~~~yv~Q~~~l~~~- 196 (697)
++++++.+.+| +.+|+||||||||||+.+|...... +... .|.. .......+..++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~------~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~ 84 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG------KASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANP 84 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC------CcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCc
Confidence 35566677777 8899999999999999999753321 1111 1110 01112346666666444431
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--
Q 005423 197 LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-- 270 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-- 270 (697)
.+..+--.....++......++++.||+|||||++||++| +.+|++++|||||+|||..++..+.+.|+++.++
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~ 164 (198)
T cd03276 85 LCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQP 164 (198)
T ss_pred CCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCC
Confidence 2222111222233334455678899999999999999999 5899999999999999999999999999998653
Q ss_pred C-CEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 271 G-CTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 271 g-~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
+ +|||+++|+. .++.++ |+|.+|..|+
T Consensus 165 ~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 165 GRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred CcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 3 5788877765 466554 9999998754
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.4e-22 Score=194.69 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=155.8
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeC-C----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKS-E----M 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~-~----~ 179 (697)
+.++|++..+... .+..+++++||+++..||+-+++|+||||||-..|+|+|..+..=.++ .+..+++.+. + .
T Consensus 4 LDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 5678888888654 356789999999999999999999999999999999999876531111 2334444331 1 1
Q ss_pred CC----ccEEEEcCccc--cCCCCCHHHHHH---------------HH----------HHcCCC---ccccccCCCCCHH
Q 005423 180 PY----GSYGFVERETT--LIGSLTVREYLY---------------YS----------ALLQLP---GFFCQRKNGLPCG 225 (697)
Q Consensus 180 ~~----~~~~yv~Q~~~--l~~~lTV~e~l~---------------~~----------~~l~l~---~~~~~~~~~LSGG 225 (697)
.+ +.+++++|++. |-|+.+|..-|- |+ ...+.. +.+..++.+|.-|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 11 34788999874 334434332221 11 112222 2245677899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|-|+|.||.|++.+|++||.||||+.+|+.++.+|.++|.++.+ +|+||+++.| +...+.+.||++-||.-|+-++.+
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~-Dl~~is~W~d~i~VlYCGQ~~ESa 241 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH-DLQMISQWADKINVLYCGQTVESA 241 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcc-cHHHHHHHhhheEEEEeccccccc
Confidence 99999999999999999999999999999999999999999985 5778887555 567899999999999999999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+.+++++
T Consensus 242 ~~e~l~~ 248 (330)
T COG4170 242 PSEELVT 248 (330)
T ss_pred chhHHhc
Confidence 9998875
No 390
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.86 E-value=3.4e-23 Score=206.52 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Q 005423 407 TRVAVLTWRSLLIMSREWKYY-WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV-PALMKEI 484 (697)
Q Consensus 407 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~al~~G~lf~~l~~~~~~i~~r~g~lff~~~~~~~~~~~~v-~~~~~er 484 (697)
+|++.+++|+++..+|||.+. ..+++..+++++++|.+|.+++++.+++ ++.|.+++.+.+.++...... .....|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999999555555 788888888887776555444 7788899
Q ss_pred HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005423 485 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 564 (697)
Q Consensus 485 ~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~ 564 (697)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.++++.+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHh
Q 005423 565 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEY 619 (697)
Q Consensus 565 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef 619 (697)
...+..+.+.+..++++++|.+.|.+.+|+ |..|+.|++|++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999984 66679999999999999999876
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.3e-21 Score=199.05 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE
Q 005423 219 KNGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 294 (697)
Q Consensus 219 ~~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v 294 (697)
...||||||||++||++++.+ |+++||||||+|||+..+..+.+.|++++++|.++|+++|++ ++.+.||++++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~ 230 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVG 230 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEE
Confidence 378999999999999999875 899999999999999999999999999987799999988874 56689999999
Q ss_pred Ee
Q 005423 295 LS 296 (697)
Q Consensus 295 L~ 296 (697)
|.
T Consensus 231 ~~ 232 (247)
T cd03275 231 VY 232 (247)
T ss_pred EE
Confidence 96
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=1.1e-21 Score=213.82 Aligned_cols=188 Identities=22% Similarity=0.289 Sum_probs=142.0
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
+++.+.++|++|.|.++ ..++++++|-+.+++.+|++||||+|||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45679999999998642 269999999999999999999999999999999999998865 87754322
Q ss_pred ccEEEEcCc--cccCCCCCHHHHHHH--------------HHHcCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 005423 182 GSYGFVERE--TTLIGSLTVREYLYY--------------SALLQLPGF-FCQRKNGLPCGERRRVRIARELVMRPHVLF 244 (697)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~e~l~~--------------~~~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 244 (697)
..+++..|+ +.+.-+.++.|++.- -..+++.+. .....++||+|||+||..|+.++..|.+|+
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl 532 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL 532 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE
Confidence 123333332 233334455555531 123344432 344568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE-EEEeCc
Q 005423 245 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGET 306 (697)
Q Consensus 245 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i-v~~G~~ 306 (697)
|||||+|||..+...+-+.|.+.. | +||+++|+- ..|.+++++|.+..+|.+ .+.|+.
T Consensus 533 LDEPtnhLDi~tid~laeaiNe~~--G-gvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 533 LDEPTNHLDIETIDALAEAINEFP--G-GVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred ecCCCcCCCchhHHHHHHHHhccC--C-ceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999888887753 3 566656654 588999999999988765 455543
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=5.4e-21 Score=192.11 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=112.4
Q ss_pred eeeeeeeEEcCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCC
Q 005423 125 VVKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195 (697)
Q Consensus 125 iL~~vs~~v~~Ge-~~aIiG~sGsGKSTLl~~L~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~ 195 (697)
.+.++|+++.+|+ +++|.||||||||||||+|+ |..-|.. . ...++|+.|....+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~------------~~~~~~~~~~~~~lg 80 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---E------------GSSLPVFENIFADIG 80 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---c------------cccCcCccEEEEecC
Confidence 3456788888995 89999999999999999998 4332211 0 012344445432221
Q ss_pred CCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEE
Q 005423 196 SLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTL 274 (697)
Q Consensus 196 ~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tv 274 (697)
..+...+....+|+|||||+.|+++ +.+|+++++||||+|||+.....+. ..++++.+.|.++
T Consensus 81 ---------------~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~v 144 (200)
T cd03280 81 ---------------DEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALV 144 (200)
T ss_pred ---------------chhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1112234446899999999999988 4899999999999999999999996 5788888778999
Q ss_pred EEEEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 275 i~tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
|+++|+ .++.++||++++|++|++++.+
T Consensus 145 i~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 145 IATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred EEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 998886 3677999999999999998874
No 394
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1e-20 Score=191.91 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=113.6
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCC----------------CceeEEE--ECCEeCCCCCcc-EEEE
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----------------RMYGEVF--VNGAKSEMPYGS-YGFV 187 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~----------------~~~G~I~--i~G~~~~~~~~~-~~yv 187 (697)
+++.+.+.+| +.+|+|+|||||||||++|.-.+-... ...+.|. +++.......+. +-++
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 4455555555 789999999999999999876542110 0112221 111111111222 3466
Q ss_pred cCcc-ccCCCCCHHHHHHHHHHcC-CCccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 188 ERET-TLIGSLTVREYLYYSALLQ-LPGFFCQRKNGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 188 ~Q~~-~l~~~lTV~e~l~~~~~l~-l~~~~~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
+|+. ..+..+++.|.+. .++ ..+.....+.+||||||||+.++++| +.+|+++++||||+|||+.++..++
T Consensus 94 ~q~~~~~~~~~~~~e~l~---~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~ 170 (213)
T cd03277 94 PQDRVGEFAKLSPIELLV---KFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF 170 (213)
T ss_pred chHHHHHHHhCChHhHhe---eeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH
Confidence 7764 3456677776651 111 11223456789999999999877554 5799999999999999999999999
Q ss_pred HHHHHHHHc-C-CEEEEEEecChHHHHhccC--EEEEEeCCe
Q 005423 262 VTLKKLAST-G-CTLLFTINQSSTEVFGLFD--RICLLSNGN 299 (697)
Q Consensus 262 ~~L~~l~~~-g-~tvi~tih~~~~~i~~~~D--~v~vL~~G~ 299 (697)
+.|++++++ | .|+|+++||.. ++.+.+| +|++|++|+
T Consensus 171 ~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 171 DMLVETACKEGTSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHhhcCCCceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 999999866 5 57888888754 4556666 788889887
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=1.4e-19 Score=176.07 Aligned_cols=199 Identities=21% Similarity=0.244 Sum_probs=150.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
-.+++.++.|+|+. ..+++-|+|+.++.|....++|.||||||||||+|+|..-... |.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCccccccc
Confidence 35899999999963 4589999999999999999999999999999999999865544 899999975311
Q ss_pred -CCccEEEEcC----------ccccCCCCCHHHHHHHHHHc----------C-CCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 180 -PYGSYGFVER----------ETTLIGSLTVREYLYYSALL----------Q-LPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 180 -~~~~~~yv~Q----------~~~l~~~lTV~e~l~~~~~l----------~-l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
......|.-- +-.+-...++.+.| |+..- + +.-....+.+.+|-|||+||.|+..|+
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence 1122333322 11122244555443 32110 0 111123345889999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.-+||+|||-|-.||..++..+++.|++-.+ +|.||+..+|-- +-+.....+++.+++|+++-.-+.+++.+
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeeeeccccchhhh
Confidence 99999999999999999999999999999884 689999988864 45677899999999999998666555544
No 396
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=2.9e-19 Score=196.25 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=138.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...+++++|++.-++. +..+++|+|+.|..|+-+.|.||||||||+|+|+|+|+-|..+ |++..-.+. ..+
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~---~~~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDG---GPK 501 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccC---CCC
Confidence 3569999999886642 4578899999999999999999999999999999999998665 888654322 114
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHH--------------------HcCCCcc------cc-----ccCCCCCHHHHHHHH
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSA--------------------LLQLPGF------FC-----QRKNGLPCGERRRVR 231 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~--------------------~l~l~~~------~~-----~~~~~LSGGqrqRv~ 231 (697)
.+-|+||.|.+.- .|.||-+-|.. ..++.+. .+ +....||+||+||++
T Consensus 502 ~lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence 5889999887543 36666665431 1112111 11 112679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 232 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
.||-+.++|++-||||.||++|......+.+.+++ .|.|.|-+.|.. .+.+.=|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 99999999999999999999999999998887766 688888877765 45667788888874
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=3.1e-19 Score=176.07 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=96.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCC---ceeEE-EECCE-eCCCCCccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR---MYGEV-FVNGA-KSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~---~~G~I-~i~G~-~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
++.+.+|+||||||||++|.+|.=..-.... ....+ .+++. ........+...++.. ..
T Consensus 21 ~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~----------------~~ 84 (178)
T cd03239 21 SNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKS----------------YF 84 (178)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECc----------------eE
Confidence 3339999999999999999998643321100 01111 11111 1111111233223222 00
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHH
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
-++.....+. ||||||||++|||+|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. .
T Consensus 85 ~~~~~~~~~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~ 160 (178)
T cd03239 85 LVLQGKVEQI--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--M 160 (178)
T ss_pred EecCCcCccc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--H
Confidence 1122111222 9999999999999996 699999999999999999999999999999877899999888863 4
Q ss_pred HhccCEEEEEeC
Q 005423 286 FGLFDRICLLSN 297 (697)
Q Consensus 286 ~~~~D~v~vL~~ 297 (697)
...+|+++.+..
T Consensus 161 ~~~adrvi~i~~ 172 (178)
T cd03239 161 FENADKLIGVLF 172 (178)
T ss_pred HhhCCeEEEEEE
Confidence 568999999964
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2e-20 Score=203.07 Aligned_cols=194 Identities=25% Similarity=0.291 Sum_probs=129.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (697)
+..|..++++..|. .+.+|++-++++..|...+|+|+||+|||||||+|+.-.-..-.++-++ -|....
T Consensus 78 ~~Di~~~~fdLa~G-----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~--~g~~t~~~~~ 150 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV--RGDDTEALQS 150 (582)
T ss_pred ccceeeeeeeeeec-----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe--eccchHHHhh
Confidence 44688888998883 5689999999999999999999999999999999986100000000111 111100
Q ss_pred ---CCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 179 ---MPYGSYGFVERETTLIGSLTVREYLY-YSALLQLPG-FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
..-...-++.++..+...++..|... .-+-++... ...+..+.||||=|-|++|||||..+|+||+|||||+.||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 00011233444443333323222211 111222222 2345568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE-EEEeCch
Q 005423 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETL 307 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i-v~~G~~~ 307 (697)
..+..-+.+.|+.+. .|+|+++|+ +..+-+.|..|+-+++-++ .|.|.-+
T Consensus 231 v~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 231 VVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred hHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 999998888887754 688876654 6677788888888876554 3445433
No 399
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.6e-19 Score=188.78 Aligned_cols=165 Identities=25% Similarity=0.321 Sum_probs=128.0
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.++.+-++||+|.|++ .++++++++|-|.--..+||+||||.||||||++|.|.+.|.. |+..-| .+
T Consensus 583 ~PPvLGlH~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKn------hr 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKN------HR 649 (807)
T ss_pred CCCeeecccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhcc------ce
Confidence 4567899999999973 5689999999999999999999999999999999999998875 766433 23
Q ss_pred ccEEEEcCcc--ccCCCCCHHHHHHHHHH------------cCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 182 GSYGFVERET--TLIGSLTVREYLYYSAL------------LQLPGF-FCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~e~l~~~~~------------l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
-+||+..|+. .|-...|..|.|.-... .++... ..-....||||||-||++|.--+..|+|||||
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILD 729 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILD 729 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEec
Confidence 4688887763 45556677777642210 111111 12245789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
|||++||..+...+.+.|++.. | .||+++|+..
T Consensus 730 EPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR 762 (807)
T KOG0066|consen 730 EPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER 762 (807)
T ss_pred CCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc
Confidence 9999999999999999888764 3 4566577653
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1.3e-18 Score=186.27 Aligned_cols=159 Identities=27% Similarity=0.310 Sum_probs=120.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CC----ccEEEEcCcc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PY----GSYGFVERET 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~----~~~~yv~Q~~ 191 (697)
++|++++|+|+||-||||-+|+|+|.+.|+- |+-. +.|...+. .. ...-||.--+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 5899999999999999999999999998864 3310 11111000 00 1112332223
Q ss_pred ccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
..+ .-+|.|-|.-. ..+.+...+++..++|||||-||++||.+++.+.+++++|||||-||...+..+.
T Consensus 175 k~~-KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 175 KVV-KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred HHh-cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH
Confidence 333 23788877432 3566777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+.+++|++.+++||++-|+ ...+--++|-|.++.+
T Consensus 254 r~Irel~~~~k~ViVVEHD-LavLD~lsD~vhI~YG 288 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHD-LAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHhccCCeEEEEech-HHHHHHhhheeEEEec
Confidence 9999999889999996554 5566667999888863
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.3e-18 Score=185.90 Aligned_cols=185 Identities=20% Similarity=0.199 Sum_probs=141.5
Q ss_pred CCceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.++.+++.+|++.+..+. -+++.+++..++.-+.++++|+||+||||++|++.|-..|.. |-+.+++ +
T Consensus 359 ~~p~l~i~~V~f~y~p~~---y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------r 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE---YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------R 426 (582)
T ss_pred CCCeeEEEeeeccCCCcc---hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------c
Confidence 456799999998875321 178999999999999999999999999999999999777654 7666554 3
Q ss_pred ccEEEEcCcccc---------------CCCCCHHHHHHHHHHcCCCcccc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 182 GSYGFVERETTL---------------IGSLTVREYLYYSALLQLPGFFC-QRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 182 ~~~~yv~Q~~~l---------------~~~lTV~e~l~~~~~l~l~~~~~-~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.+++|-.|...= +|..|-.|.-+-...+++++... ....+||||||=||++|.....+|.+|+|
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVL 506 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVL 506 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEe
Confidence 457777775432 22222222222223445555432 33588999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||||+.||-.+-..+.+.|+.+. | .||+++|+ ...+..+|+.+.+.++|++.-
T Consensus 507 DEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 507 DEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCccccHHHHHHHHHHHHhcC--C-cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999988874 4 45554665 568889999999999999864
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=2.6e-18 Score=166.97 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=95.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE-EEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
+.+|.++.|+|||||||||+++++....-... |.+.... .. ..+ ++++....+ .
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~---~~~~~~~-~~-----~~g~~~~~~~~~~---------i------- 72 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQ---SATRRRS-GV-----KAGCIVAAVSAEL---------I------- 72 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc---hhhhccC-cc-----cCCCcceeeEEEE---------e-------
Confidence 33556999999999999999999866432211 2222110 00 011 112211111 0
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
....+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|+++|++ ++.+
T Consensus 73 -----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~ 145 (162)
T cd03227 73 -----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAE 145 (162)
T ss_pred -----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHH
Confidence 0012499999999999999987 7899999999999999999999999999876688999988876 3556
Q ss_pred ccCEEEEEeC
Q 005423 288 LFDRICLLSN 297 (697)
Q Consensus 288 ~~D~v~vL~~ 297 (697)
.+|+++.|..
T Consensus 146 ~~d~~~~l~~ 155 (162)
T cd03227 146 LADKLIHIKK 155 (162)
T ss_pred hhhhEEEEEE
Confidence 7999999963
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.7e-18 Score=177.61 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..|||||+||++||++++. +|+++++||||++||+.++..+++.|+++.+ +.|+|+++|++. +...+|++++|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997664 9999999999999999999999999999874 689999899874 55799999999
Q ss_pred eCCe
Q 005423 296 SNGN 299 (697)
Q Consensus 296 ~~G~ 299 (697)
.+|+
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.74 E-value=8.2e-18 Score=178.27 Aligned_cols=173 Identities=27% Similarity=0.377 Sum_probs=126.4
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEeCCCCCccEEEEcCc-cccCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----ARMYGEVFVNGAKSEMPYGSYGFVERE-TTLIG 195 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~-----~~~~G~I~i~G~~~~~~~~~~~yv~Q~-~~l~~ 195 (697)
...+|+|||++++||++++|+|+|||||||||++|+|..... ...+|.|.+--.. ..+.+|-+ +.-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 346899999999999999999999999999999999975321 1123666553211 11222222 11122
Q ss_pred CCCHHHHHH-----------HHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 196 SLTVREYLY-----------YSALLQLPG--FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 196 ~lTV~e~l~-----------~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
..|+.|.+. .-...++.+ ...++.++||.|||.|+.||.+|..+|.+++.||--|.||..++..+.+
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 345555442 112223322 1235568999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCEEEEEEecChHHHHhc-cCEEEEEeCCeEE
Q 005423 263 TLKKLAS-TGCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 301 (697)
Q Consensus 263 ~L~~l~~-~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv 301 (697)
-|.++++ .|.|+++++|+|. .+-++ =|+++.+.-|++.
T Consensus 549 kiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 549 KISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 9999995 5899999999983 55556 6999888766653
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.74 E-value=5e-18 Score=170.51 Aligned_cols=144 Identities=20% Similarity=0.135 Sum_probs=104.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+++|+++. +|++++|+||||||||||+|+|+|...- ...|.++.. . .++.|.+.+++.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466666655 5799999999999999999999985421 123333211 1 3566777889999999998
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEEec
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIARELVM--RPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tvi~tih~ 280 (697)
.++.. ....+.+|+.-+...+. +|+++|+||||+|||+.....+. ..++++.+.|.|+|+++|+
T Consensus 81 ~~~~s-------------~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 81 RDGIS-------------YFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred ccccC-------------hHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 65321 12455677766666667 99999999999999999998775 4788888788999998888
Q ss_pred ChHHHHhc--cCEEEEE
Q 005423 281 SSTEVFGL--FDRICLL 295 (697)
Q Consensus 281 ~~~~i~~~--~D~v~vL 295 (697)
+. .+..+ .++|..+
T Consensus 148 ~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 148 LE-LADLLDLDSAVRNY 163 (199)
T ss_pred HH-HHHhhhcCCCeEEE
Confidence 64 44443 4455444
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.74 E-value=4.2e-18 Score=171.35 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=106.8
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~ 207 (697)
.++++.+|++++|+|||||||||||++|++.. .... |.. .......+++..|....+ ...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~---g~~------~~~~~~~i~~~dqi~~~~---~~~d~i---- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQI---GCF------VPAESASIPLVDRIFTRI---GAEDSI---- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHc---CCC------ccccccccCCcCEEEEEe---cCcccc----
Confidence 34555689999999999999999999999532 1111 221 111122344443332222 222221
Q ss_pred HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHH
Q 005423 208 LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 208 ~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
....+.++++++ |++.+.+++.+|+++|+||||+|||+.....+.. +++.+.+.+.++|+++|++ ++.
T Consensus 86 --------~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~ 154 (202)
T cd03243 86 --------SDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELA 154 (202)
T ss_pred --------cCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHH
Confidence 123345666655 4777788899999999999999999998888765 5677777788999988864 567
Q ss_pred hccCEEEEEeCCeEEEEeCchhhH
Q 005423 287 GLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+.+|++..++.|++...++..+..
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 155 DLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHhhcCCCeEEEEEEEEecCCeee
Confidence 789999999999999888765443
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=6.1e-18 Score=172.68 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=109.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE-EEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e 201 (697)
+.+.+|+++...+|++++|.||||+|||||++.++-. .- ..++| |||.+...++ +.+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~~------------------la~~g~~vpa~~~~~~---~~~ 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-VL------------------MAQIGCFVPCDSADIP---IVD 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-HH------------------HHHhCCCcCcccEEEe---ccc
Confidence 3578899999999999999999999999999998721 00 00111 3333322111 111
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHH-cCCEEE
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSALLMMVTLKKLAS-TGCTLL 275 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~-~g~tvi 275 (697)
.+. ..+++.+ ...+++|.|+++++.+++++ +.+|+++||||| |++||...... ..++.+.+ .|.++|
T Consensus 75 ~il--~~~~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vl 147 (222)
T cd03285 75 CIL--ARVGASD---SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCL 147 (222)
T ss_pred eeE--eeecccc---chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEE
Confidence 110 0112221 23578999999999999999 899999999999 99999888754 33355553 578999
Q ss_pred EEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 276 ~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+++|. .++.++||++..+++|++...+.
T Consensus 148 isTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 148 FATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred EEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 98884 57889999999999999987765
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.72 E-value=1.3e-16 Score=198.49 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=84.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.+....|||||.||+-||.+|..+ +.+++|||||+||++.....+++.|++|.+.|.|||++-|++ ++.+.||.|
T Consensus 1694 Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~i 1771 (1809)
T PRK00635 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYL 1771 (1809)
T ss_pred CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEE
Confidence 455678999999999999999876 789999999999999999999999999999999999977765 566779999
Q ss_pred EEEe------CCeEEEEeCchhhHH
Q 005423 293 CLLS------NGNTLFFGETLACLQ 311 (697)
Q Consensus 293 ~vL~------~G~iv~~G~~~~~~~ 311 (697)
+-|- +|+||+.|+|+++..
T Consensus 1772 idlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1772 IEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9993 579999999999865
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.6e-16 Score=177.78 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=83.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 217 QRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
+....|||||.|||-||.+|..+. -+.+|||||+||-..-..++++.|.+|.+.|.|||++-|. . ++.+.||.|+
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN-L-dVIk~AD~II 895 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN-L-DVIKTADWII 895 (935)
T ss_pred CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc-c-ceEeecCEEE
Confidence 445789999999999999999887 8999999999999999999999999999999999996554 3 5778999999
Q ss_pred EE------eCCeEEEEeCchhhHH
Q 005423 294 LL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 294 vL------~~G~iv~~G~~~~~~~ 311 (697)
=| .+|+||+.|+|+++.+
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 99 3589999999999875
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.70 E-value=3.2e-17 Score=178.03 Aligned_cols=161 Identities=23% Similarity=0.332 Sum_probs=121.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++|+-+-.+ ....++..++|.+++|--+.|.||||||||+|.|+|.|+-|... |...+ .+...+
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcce
Confidence 477888776554 34568999999999999999999999999999999999998643 44432 233458
Q ss_pred EEEcCccccCCCCCHHHHHHHH-----------------H---HcCCCcc---------ccccCCCCCHHHHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYS-----------------A---LLQLPGF---------FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~-----------------~---~l~l~~~---------~~~~~~~LSGGqrqRv~IA~a 235 (697)
-|+||.|.+- --|.+|-+-|. + .+++... .......||||||||+++||.
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 9999988654 33444444221 0 1111111 111225699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+-++|+.-+|||.||+.-+.....+.+..++ .|.+.|-++|+|+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 9999999999999999999888888877665 5889999899986
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=6.7e-16 Score=184.55 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=86.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.++...+|||||+|||.||++|+.+| +++||||||+|||+.....+++.|++++++|.|||+++|++ ..+ ..||+|
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~v 558 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYV 558 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEE
Confidence 46778999999999999999999986 89999999999999999999999999998899999988886 355 589999
Q ss_pred EEE------eCCeEEEEeCchhhH
Q 005423 293 CLL------SNGNTLFFGETLACL 310 (697)
Q Consensus 293 ~vL------~~G~iv~~G~~~~~~ 310 (697)
++| ++|++++.|+++++.
T Consensus 559 i~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 559 IDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEecccccCCCCEEeeccCHHHHh
Confidence 999 899999999998874
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.64 E-value=7.8e-16 Score=184.31 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=86.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.++....|||||||||.||++|..+| +++||||||+|||+..+..+++.|+++++.|.|||+++|++. ++ ..||+|
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~v 560 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYI 560 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEE
Confidence 46778999999999999999999997 999999999999999999999999999988999999888864 55 469999
Q ss_pred EEE------eCCeEEEEeCchhhHH
Q 005423 293 CLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 293 ~vL------~~G~iv~~G~~~~~~~ 311 (697)
++| ++|++++.|+++++..
T Consensus 561 i~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 561 VDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEeccccCCCCCEEeeccCHHHHhc
Confidence 999 9999999999988743
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=3.4e-16 Score=157.71 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=99.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
...+.+|+++..++|++++|+||||+||||++++++++.-- +++ |. +| +.....+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G~----------~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---GC----------FV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---CC----------Cc---chhhcCccChh
Confidence 34688999999999999999999999999999999876311 111 11 12 22334556666
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEEec
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~g~tvi~tih~ 280 (697)
++.. .++..+...+..+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+ ...++.+.+.|.++|+++|.
T Consensus 74 ~I~~--~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 74 RLLS--RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred heeE--ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 6642 2233334455667899999975 555678899999999999999999776655 45678888889999998886
Q ss_pred C
Q 005423 281 S 281 (697)
Q Consensus 281 ~ 281 (697)
.
T Consensus 151 ~ 151 (204)
T cd03282 151 R 151 (204)
T ss_pred H
Confidence 4
No 414
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=1.4e-15 Score=154.72 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=108.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+.+++++..++ ++++|.||||||||||||.+++..-. |+ .|.........++++.| +++.+++.|++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 467788887776 99999999999999999999875321 11 12222222345676654 56677887776
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEE
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~t 277 (697)
..+ .|.=...++.|++++ +.+|++++|||| |+++|.... ....++.+.+. +.++|++
T Consensus 87 s~g---------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 87 AGG---------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred ccC---------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEE
Confidence 432 233233333444444 579999999999 888887552 23455555655 8899998
Q ss_pred EecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 278 INQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 278 ih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|+. ++.+++|++.-+.+|++...+..+++.
T Consensus 150 TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 150 THYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred eCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8874 678899998888899998887776654
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=4.7e-15 Score=155.98 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc-
Q 005423 220 NGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF- 289 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~- 289 (697)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+.. .+.++|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 458999999999999985 7999999999999999999999999998753 34 44456543 566666
Q ss_pred --CEEEEEeCCeE
Q 005423 290 --DRICLLSNGNT 300 (697)
Q Consensus 290 --D~v~vL~~G~i 300 (697)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.9e-16 Score=168.22 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=130.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC-
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~- 179 (697)
+.|.++|.+.+-. .+.++.|-|++|-.|...+|+||||-||||||+.|+.+ +||. =+|++..+.+..
T Consensus 263 ~DIKiEnF~ISA~-----Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISAQ-----GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeecc-----cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeec
Confidence 4567777776643 45789999999999999999999999999999999987 4554 244444432110
Q ss_pred -----------CCccEEEEcCcccc-----CCCCCHHHHHHHHH--------------------HcCCCcc-ccccCCCC
Q 005423 180 -----------PYGSYGFVERETTL-----IGSLTVREYLYYSA--------------------LLQLPGF-FCQRKNGL 222 (697)
Q Consensus 180 -----------~~~~~~yv~Q~~~l-----~~~lTV~e~l~~~~--------------------~l~l~~~-~~~~~~~L 222 (697)
..++...+..+..| -...|+.|.|.-.+ -++.... .++....+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 00111111111111 12345555552110 1122222 23444789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 223 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 223 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
|||=|-||++||||..+|-+|.|||||++||..+..-+-+.|+.+. +|.++++|+- ..+-..|..|+-|++-++-|
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhhhhh
Confidence 9999999999999999999999999999999998888888888776 4788877765 57788999999999887655
Q ss_pred E
Q 005423 303 F 303 (697)
Q Consensus 303 ~ 303 (697)
+
T Consensus 490 Y 490 (807)
T KOG0066|consen 490 Y 490 (807)
T ss_pred h
Confidence 4
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=5.4e-15 Score=154.80 Aligned_cols=138 Identities=24% Similarity=0.242 Sum_probs=97.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
.-++|+||||||||||+++|+|.++++. |+|.++|+++... .+.+++++|.+ +....+|.++..-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~~--- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKAE--- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHHH---
Confidence 5789999999999999999999999875 9999999876321 12356777765 334556665532111
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH-H----
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-V---- 285 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~-i---- 285 (697)
| .....+..+|+++++|||++ ...+..+++.+. +|.++|+|+|.+..+ +
T Consensus 185 --------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 185 --------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred --------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEechhHHHHHHhCh
Confidence 1 13333446999999999974 233445555544 699999999975432 2
Q ss_pred -------HhccCEEEEEeCCeEEEEeCchhh
Q 005423 286 -------FGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 286 -------~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
..+|||+++|++|+ ..|.++++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 26799999999887 56666554
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=1.4e-14 Score=143.99 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=86.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC 216 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~ 216 (697)
+++|.||||+|||||||.++- ..-... |... ......++++.+....+ +..+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~---G~~v------~a~~~~~~~~d~il~~~---------------~~~d~~~ 56 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQI---GSFV------PAESAELPVFDRIFTRI---------------GASDSLA 56 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHh---CCCe------eehheEecccceEEEEe---------------CCCCchh
Confidence 368999999999999999982 221111 2211 11112233333322111 1122233
Q ss_pred ccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v 292 (697)
+..+.+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+++|+.
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~ 131 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEH 131 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcC
Confidence 455678887776 444444 499999999999999999877765 566777764 88999988886 577788764
Q ss_pred EEEeCCeEEEE
Q 005423 293 CLLSNGNTLFF 303 (697)
Q Consensus 293 ~vL~~G~iv~~ 303 (697)
--++++++...
T Consensus 132 ~~v~~~~~~~~ 142 (185)
T smart00534 132 PGVRNLHMSAD 142 (185)
T ss_pred ccceEEEEEEE
Confidence 44445554443
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=2e-13 Score=145.65 Aligned_cols=162 Identities=27% Similarity=0.297 Sum_probs=120.1
Q ss_pred cceeeeeeeEEcCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCC
Q 005423 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (697)
Q Consensus 123 ~~iL~~vs~~v~~G-----e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (697)
+..+.+..+.++.| |++..+|+||.||||+++.++|+++|+. .|+|- .-.++|-+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p---------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIP---------VLNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCccc---------ccceeccccccCccccc
Confidence 45566666666665 6799999999999999999999998875 24432 23467777764333355
Q ss_pred CHHHHHHHH-----------H----HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005423 198 TVREYLYYS-----------A----LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 198 TV~e~l~~~-----------~----~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~ 262 (697)
||++.+.-- . -+......++...+|||||.|||+||..|-..+++.+.|||.+-||++.+..--+
T Consensus 418 tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred hHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 788776321 1 1222334456678999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 263 TLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 263 ~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+++.- +.++|-.++-|+ -...--++||+++..
T Consensus 498 vikRfilhakktafvVEhd-fImaTYladrvivf~ 531 (592)
T KOG0063|consen 498 VIKRFILHAKKTAFVVEHD-FIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHhccchhhhhhhH-HHHHHhhcceeEEEe
Confidence 999986 556676665554 334445799988654
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=5.8e-13 Score=145.74 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc-
Q 005423 220 NGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF- 289 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~- 289 (697)
..+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 469999999999999886 699999999999999999999999988764 346777777753 444443
Q ss_pred -CEEEEEeCCeE
Q 005423 290 -DRICLLSNGNT 300 (697)
Q Consensus 290 -D~v~vL~~G~i 300 (697)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=6.3e-13 Score=135.03 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=82.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccC-CCCCHHHHHHHHHHcCCCc
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~e~l~~~~~l~l~~ 213 (697)
..++|.||||+|||||||.++. .+.. . |..... ....++|..|....+ ...++.+++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~-~---G~~v~a------~~~~~~~~d~i~~~l~~~~si~~~~S~-------- 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH-I---GSFVPA------DSATIGLVDKIFTRMSSRESVSSGQSA-------- 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh-C---CCeeEc------CCcEEeeeeeeeeeeCCccChhhccch--------
Confidence 7899999999999999999984 3322 1 443321 123467776654322 22233333210
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc---CCEEEEEEecCh
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAST---GCTLLFTINQSS 282 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~---g~tvi~tih~~~ 282 (697)
+ .-|-||++++++++.+|+++|+|||++|+|+.....+ ...++++.+. +.++|+++|...
T Consensus 92 f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 92 F---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred H---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 0 3578999999999999999999999999999765444 5688888764 247888888753
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.41 E-value=3.8e-13 Score=159.37 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=93.6
Q ss_pred eeeEEcCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH
Q 005423 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 129 vs~~v~~G-e~~aIiG~sGsGKSTLl~~L~G~-~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|..+ ....++|..|....+. -.+++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~~i~---~~~si-- 379 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFADIG---DEQSI-- 379 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheeeecC---hHhHH--
Confidence 68888877 99999999999999999999987 22221 3 11110 0112344434322111 11221
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEEecCh
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~g~tvi~tih~~~ 282 (697)
....+.+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ..+|+.+.+.|.++|++||+..
T Consensus 380 ----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 380 ----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred ----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 233467999999999998876 89999999999999999999988 5788888888999999888764
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.38 E-value=6.2e-12 Score=127.94 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++ .-+|+++|++ .+++.+|+.+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v 211 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGV 211 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--cccccccccccc
Confidence 389999999999997663 467899999999999999999999999998754 4466667874 688999998876
Q ss_pred e
Q 005423 296 S 296 (697)
Q Consensus 296 ~ 296 (697)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 424
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.36 E-value=1.1e-10 Score=120.15 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=157.4
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--HHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHH
Q 005423 415 RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GHS--LSSV----VTRVAAIFVFVSFNSLLNIAGVPA-LMKEIKT 486 (697)
Q Consensus 415 R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l-~~~--~~~i----~~r~g~lff~~~~~~~~~~~~v~~-~~~er~v 486 (697)
|+++..+|||.....-+++-+++.+++|.++-+. ++. ..+. +--.|.+.+.+...+... +... .-.|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhCH
Confidence 6778899999999999999999999999887543 211 1111 111233332222222221 1111 1122233
Q ss_pred hHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 005423 487 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 566 (697)
Q Consensus 487 f~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~ 566 (697)
+.|=+ ..=-+...|++++.+.+++..++..+++.++.|++.+++. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33322 2333578899999999999999999999999998877654 34555555566667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccc
Q 005423 567 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISS 646 (697)
Q Consensus 567 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~ 646 (697)
.+..+.+.+..+++++||.+.|.+.+|+ |.+|+.+++|.+|+.|++-..-..+ +
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~---------------------~--- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGV---------------------S--- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCC---------------------C---
Confidence 8888888999999999999999999996 6677999999999999855322211 0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHH
Q 005423 647 KSNSKWGNLLVLFLMAIGYRLLLFV 671 (697)
Q Consensus 647 ~~~~~w~~~~iL~~~~v~~~~l~~i 671 (697)
...+.|.++++|+++.+++.+++..
T Consensus 210 ~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 0123567888999988888877653
No 425
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.31 E-value=1.9e-11 Score=125.66 Aligned_cols=141 Identities=19% Similarity=0.191 Sum_probs=91.1
Q ss_pred EEcCCcEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTL-l~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
-+++|++++|.|+|||||||| ++.+++..+++. ..+++.. + .+..+.+.....++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~~~yi~~---------------e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---SVSYVST---------------Q------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---cEEEEeC---------------C------CCHHHHHHHHHHhC
Confidence 367999999999999999999 689998765432 2233321 1 13333333322222
Q ss_pred CCc-------c--ccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCE
Q 005423 211 LPG-------F--FCQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVSALLMMVTLKKLASTGCT 273 (697)
Q Consensus 211 l~~-------~--~~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgL----D~~~~~~i~~~L~~l~~~g~t 273 (697)
..- . .......+|+++.++-.+.+.+-. +|+++++||||+++ |+....++++.++++++.|.|
T Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~t 155 (230)
T PRK08533 76 YDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKV 155 (230)
T ss_pred CchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCE
Confidence 100 0 001112467776666555554433 69999999999999 888888999999999888888
Q ss_pred EEEEEecChH------HHHhccCEEEEEe
Q 005423 274 LLFTINQSST------EVFGLFDRICLLS 296 (697)
Q Consensus 274 vi~tih~~~~------~i~~~~D~v~vL~ 296 (697)
+++++|+... .+..++|-|+.|+
T Consensus 156 vi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 156 IILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EEEEecccccccccceeEEEeeeEEEEEE
Confidence 8886554321 1244678888776
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=2.3e-11 Score=124.21 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=89.2
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
+.+.+|+++.+++|++++|.||||+||||+++++++ .+.+.. |..... .. -.++|..|-...+ ...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a-~~-----~~~~~~~~i~~~~---~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPA-SS-----ATLSIFDSVLTRM---GASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEc-Cc-----eEEeccceEEEEe---cCcc
Confidence 357899999999999999999999999999999999 333332 554332 11 1233333221111 1111
Q ss_pred HHHHHHHcCCCccccccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCEEEEE
Q 005423 202 YLYYSALLQLPGFFCQRKNGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAST-GCTLLFT 277 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LS--GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~~-g~tvi~t 277 (697)
++ ..++| ..|-+|++-...-+.+|+++|+|||.+|.|+.....+ ...++.+.+. +.++|++
T Consensus 86 ~~---------------~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 86 SI---------------QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred cc---------------ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 11 11222 2456666666666789999999999999887776664 5677777765 8899998
Q ss_pred EecCh
Q 005423 278 INQSS 282 (697)
Q Consensus 278 ih~~~ 282 (697)
+|.+.
T Consensus 151 TH~~~ 155 (222)
T cd03287 151 THYPS 155 (222)
T ss_pred cccHH
Confidence 88763
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=2.3e-12 Score=115.87 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=58.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCccEEEEcCccccCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (697)
..+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ..+..++++|+ ++ ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 36899999999999999999999999999999986 2899999987421 22346777776 44 45
Q ss_pred CHHHHHHHH
Q 005423 198 TVREYLYYS 206 (697)
Q Consensus 198 TV~e~l~~~ 206 (697)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.26 E-value=5.7e-11 Score=120.42 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 269 (697)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999974
No 429
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.25 E-value=2e-10 Score=115.89 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005423 497 GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 576 (697)
Q Consensus 497 ~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~ 576 (697)
+...++++|++..++..+++++++..+.|++.|++.. .++.+++.+++..++..+++.++++++++...+ +...+.
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999874 566777788888899999999999999876543 344445
Q ss_pred HHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccccCCCchhHHH
Q 005423 577 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGNLL 656 (697)
Q Consensus 577 ~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~~~ 656 (697)
.+.++++|.+.|.+.+|+ |..|+.|++|++|+.+++-...+.|. ....|.+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------------~~~~~~~~~ 186 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGGN-------------------------DGTLWQAVA 186 (208)
T ss_pred HHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCCc-------------------------HHHHHHHHH
Confidence 566677888899999996 66779999999999999876554320 123578889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 005423 657 VLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 657 iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
+|+++.+++.++++...|+++|
T Consensus 187 ~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 187 VLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999988887775543
No 430
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.25 E-value=1.3e-09 Score=112.04 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=142.1
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH--HhHhhccCCCcc
Q 005423 421 SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT-RVAAIFVFVSFNSLLNIAGVPALMKEIK--TYASEESNMHSG 497 (697)
Q Consensus 421 ~Rd~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~i~~-r~g~lff~~~~~~~~~~~~v~~~~~er~--vf~rE~~~g~Y~ 497 (697)
+|||.....-+.+.+++-++++.+|-+-. +.+..+. ..|.+-+...+.+.+..+ -....||. .+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQA--IAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhCHHHHHhcCCC-c
Confidence 69999999889988888888888776521 1111111 222222222121111111 12233433 4444444433 6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005423 498 ALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK---DVYWSILTLIS 574 (697)
Q Consensus 498 ~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~~~---~~~~a~~~~~~ 574 (697)
...|+++|++..++..++..+++. +++++.|++.....+ ..++.+.+..+.+.+++.+++++.+ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 889999999998888877765555 556677988754433 3333444455556677777777764 44444777788
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhcCccccCCCchhH
Q 005423 575 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGN 654 (697)
Q Consensus 575 ~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~ 654 (697)
+..+++++||.+.|.+.+|+ |..|+.+++|++|+.+++-.--..+ - .....|.+
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~----------------------~--~~~~~~~~ 209 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS----------------------V--DTFGAVRD 209 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC----------------------C--ChhhHHHH
Confidence 88899999999999999996 7778999999999999765431111 0 11235778
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005423 655 LLVLFLMAIGYRLLLFVLLY 674 (697)
Q Consensus 655 ~~iL~~~~v~~~~l~~i~L~ 674 (697)
+++++++.+++..++....|
T Consensus 210 ~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777666554
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.24 E-value=1.6e-11 Score=141.97 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +++||+++|+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 35899999999999999985 699999999999999999999999999984 899999999874 44689999999
Q ss_pred eCCe
Q 005423 296 SNGN 299 (697)
Q Consensus 296 ~~G~ 299 (697)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.24 E-value=4.9e-11 Score=132.73 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=106.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------------CCCccEEEEcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------------MPYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------------~~~~~~~yv~Q 189 (697)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.-. ...+.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 9999999999999999999999999999988764 99998664321 01245677755
Q ss_pred ccc--cCC------CCCHHHHHHHHHHcCCCccccccCCCCCH-HHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHH
Q 005423 190 ETT--LIG------SLTVREYLYYSALLQLPGFFCQRKNGLPC-GERRRVRIARELVMRPHVLFIDEP--LYHLDSVSAL 258 (697)
Q Consensus 190 ~~~--l~~------~lTV~e~l~~~~~l~l~~~~~~~~~~LSG-GqrqRv~IA~aL~~~P~iLlLDEP--TsgLD~~~~~ 258 (697)
-+. ... .+|+.|.++- .+..-. --...|+- -|-+| ++. +.+.|| |+|+|+....
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~---~g~~Vl--l~~Dsltr~A~A~r-----Eis-----l~~ge~P~~~G~dp~~~~ 286 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRD---QGLNVM--LMMDSVTRVAMAQR-----EIG-----LAVGEPPTTKGYTPSVFA 286 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---CCCcEE--EEEeChHHHHHHHH-----HHH-----HhcCCCCccccCCHHHHH
Confidence 332 110 1122222210 000000 00000100 00111 110 112365 6799999999
Q ss_pred HHHHHHHHHHH--cCC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchh
Q 005423 259 LMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 308 (697)
Q Consensus 259 ~i~~~L~~l~~--~g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 308 (697)
.+.++++++.. +|. ||++..|+.. + .+||++..+.+|+++..++..+
T Consensus 287 ~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 287 ILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence 99999999984 575 8888777654 3 6899999999999999998765
No 433
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.23 E-value=2.5e-09 Score=111.59 Aligned_cols=237 Identities=15% Similarity=0.025 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 005423 409 VAVLTWRSLLIMSRE-WKYYWLRLILCMILTLCVGTVFSGLGHSLSS--VVT--RVAAIFVFVSFNSLLNIAGVPALMK- 482 (697)
Q Consensus 409 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~al~~G~lf~~l~~~~~~--i~~--r~g~lff~~~~~~~~~~~~v~~~~~- 482 (697)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+ ..+ --|.+-+.+++.++.... ...+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~-~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETI-YATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455669999999999 9999889999998888888887543111111 111 112222222222211100 011111
Q ss_pred -hHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005423 483 -EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 561 (697)
Q Consensus 483 -er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~~~ 561 (697)
|+..++|-+..-. ++..+.+|+++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|++++++
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333 678899999999877777766665555543 344443 334444455566677778999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhh
Q 005423 562 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSA 641 (697)
Q Consensus 562 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~ 641 (697)
.++.+.+..+...+..+++++||.+.|.+.+|+ |..++.+++|++|+.|++=.. +.|
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~-~~g-------------------- 219 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPV-MLG-------------------- 219 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHH-HhC--------------------
Confidence 999998888889999999999999999999996 666789999999999975433 211
Q ss_pred cCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005423 642 YDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLR 676 (697)
Q Consensus 642 ~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~ 676 (697)
- ...+.|.++++++++.+++.+++....|++
T Consensus 220 --~--~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 220 --G--PGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred --C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011245677888888888888777665543
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.23 E-value=1e-11 Score=132.80 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=113.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCCCCC--------c---cEEEEcCcc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSEMPY--------G---SYGFVERET 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~~~~--------~---~~~yv~Q~~ 191 (697)
+||++++++|.||-||||-|++|+|.++|.- |.- .+.|...+..+ + ..-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 4899999999999999999999999998863 221 00111110000 0 011222222
Q ss_pred ccCCCCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
... ..+|.++|.- ...+.|....++....|||||-||.+||.+-+++.++.++|||.+-||...+..-.
T Consensus 175 r~~-k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 175 RAV-KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHH-HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 211 2355555532 12334555566777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
..++.+.....=||++.|+. +..--+.|-+.+|..
T Consensus 254 ~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred HHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 99999998778888866765 456667899998863
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.23 E-value=8.2e-11 Score=128.23 Aligned_cols=74 Identities=18% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 221 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
-+|+||+|+++||..|+ .+|++++||||+++||...+..+++.|.+.. .++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCC-----CCCCce
Confidence 58999999999999999 8999999999999999999999998886532 344433332 357999
Q ss_pred EEEEeCCeEEE
Q 005423 292 ICLLSNGNTLF 302 (697)
Q Consensus 292 v~vL~~G~iv~ 302 (697)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999988753
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.23 E-value=1.3e-11 Score=146.88 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=95.9
Q ss_pred eeEEc-CCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 130 NGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 130 s~~v~-~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
++.+. .+.++.|.|||++||||+||.++... -... | ..+... ...++++.+-..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~---G------~~vpa~~~~~i~~~~~i~~-------------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKS---G------LPIPANEPSEIPVFKEIFA-------------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHh---C------CCcccCCCccccccceEEE--------------
Confidence 34444 46789999999999999999986431 0110 1 111000 011222222111
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEEecChHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
..+.........+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+. .+++.+.+.|.++|++||++. ..
T Consensus 377 -~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~ 453 (782)
T PRK00409 377 -DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LK 453 (782)
T ss_pred -ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HH
Confidence 11112223345578999999999999998 899999999999999999998885 467788888899999888853 33
Q ss_pred HhccCEEEEEeCCeEEEE
Q 005423 286 FGLFDRICLLSNGNTLFF 303 (697)
Q Consensus 286 ~~~~D~v~vL~~G~iv~~ 303 (697)
...+|+..++ ++.+.+.
T Consensus 454 ~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 454 ALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHhcCCCeE-EEEEEEe
Confidence 3445555443 5666553
No 437
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.22 E-value=4.1e-09 Score=109.72 Aligned_cols=237 Identities=12% Similarity=0.078 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CC------CH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005423 406 ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GH------SL---SSVVTRVAAIFVFVSFNSLLNIA 475 (697)
Q Consensus 406 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~l-~~------~~---~~i~~r~g~lff~~~~~~~~~~~ 475 (697)
+++++.+++|+++...|||..+..-+++.+++-+++|.+|-.. +. +. -...--.|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999998542 11 10 111112233322222222211
Q ss_pred HHHHHHHh--HHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 005423 476 GVPALMKE--IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEG 553 (697)
Q Consensus 476 ~v~~~~~e--r~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~s 553 (697)
+. ....| +..+.+=+.... +...+.+++++..+-..++..++..++.++ .|.+.....++.....+++..++..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11222 223333343333 677799999999987777776655555443 36655543444444444556667779
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCc-ccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccc
Q 005423 554 LMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTI 632 (697)
Q Consensus 554 l~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~-~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~ 632 (697)
+|.++++++++.+....+.+.+..+++..+|.+.+.+.+|. |-|..|+.+++|++|..|++=.- +.|
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g----------- 223 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG----------- 223 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC-----------
Confidence 99999999999888888888888899999999988877642 23777799999999999865421 111
Q ss_pred cHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 005423 633 SGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 675 (697)
Q Consensus 633 ~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~ 675 (697)
+ ..|..+++++++.+++.+++....|+
T Consensus 224 ----------~------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 ----------Q------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------C------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 12555667777777777777665544
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.22 E-value=8.3e-11 Score=116.08 Aligned_cols=82 Identities=22% Similarity=0.092 Sum_probs=67.2
Q ss_pred ccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEecChH--
Q 005423 215 FCQRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST-- 283 (697)
Q Consensus 215 ~~~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~tih~~~~-- 283 (697)
.+..+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 34556789999998 4555555677999999999999999 888888999999999889999998876542
Q ss_pred ------HHHhccCEEEEEe
Q 005423 284 ------EVFGLFDRICLLS 296 (697)
Q Consensus 284 ------~i~~~~D~v~vL~ 296 (697)
.+..+||.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 2678899999997
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.2e-10 Score=127.48 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3699999999999999999 99999999999999999999999999764 678888888753
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=99.20 E-value=4.5e-11 Score=137.44 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 221 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||++|+|. +...||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 589999999999999997 5899999999999999999999999999974 688999999874 558999999998
Q ss_pred CCe
Q 005423 297 NGN 299 (697)
Q Consensus 297 ~G~ 299 (697)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 653
No 441
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=6.4e-11 Score=146.27 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=74.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
..+.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|.+ ..
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~ 1022 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EF 1022 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HH
Confidence 345678999999999999999986 7999999999999999999999999999988899999877876 57
Q ss_pred HHhccCEEEEEeCC
Q 005423 285 VFGLFDRICLLSNG 298 (697)
Q Consensus 285 i~~~~D~v~vL~~G 298 (697)
...++|+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 88899999999754
No 442
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.18 E-value=4.6e-11 Score=123.91 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=98.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe-CC--CCC---ccEEEEcCccccCCCC---CHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV--NGAK-SE--MPY---GSYGFVERETTLIGSL---TVR 200 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i--~G~~-~~--~~~---~~~~yv~Q~~~l~~~l---TV~ 200 (697)
.+.+||.++|+||+|+|||||++.|++...... ....+.+ -|.+ .+ ... ..+-.+.+-+. .+.. ..+
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 456899999999999999999999999876531 1123222 2221 10 000 11222222221 1110 001
Q ss_pred HHHHHHHHc---C------------CCc----cccccCCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 201 EYLYYSALL---Q------------LPG----FFCQRKNGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 201 e~l~~~~~l---~------------l~~----~~~~~~~~LSGGq--------rqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
..+..+... + ++. ........+|||| +||+++||++..+++|.+| ||+.+|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d 167 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVD 167 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheec
Confidence 111111111 1 000 0112235689999 9999999999999999999 999999
Q ss_pred HHHHHH-HHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 254 SVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 254 ~~~~~~-i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
+.+... ++ +.++...+.|.|+.+|.. .....+|.|.+|+.|++
T Consensus 168 ~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 168 TGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred CCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCCeEEEcCCCCc
Confidence 655544 54 556655667888877764 34578999999999987
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.16 E-value=9e-11 Score=125.88 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=96.6
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+..... ... ...+..+.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 556788999999999999999999999999998764 7777754221 111 112222211100
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
.+ .++-...-.++.+|-.+|+++++|||.+ .++.++++.+.....+++.|+|..+ +.
T Consensus 200 -------------~~-~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~ 256 (308)
T TIGR02788 200 -------------QG-LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PE 256 (308)
T ss_pred -------------CC-cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HH
Confidence 00 1111112245567888999999999996 3456777777643345688888875 55
Q ss_pred hccCEEEEEeCCeEEEEeCchhhH
Q 005423 287 GLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+..||+..|..|++...|.+.+.+
T Consensus 257 ~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 257 EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhhccccccCCCHHHH
Confidence 669999999999988888877765
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.15 E-value=1.4e-10 Score=110.63 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=79.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCC--cc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-YSALLQLP--GF 214 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~--~~ 214 (697)
+++|.|+||+||||+++.+++...... |.|.+.+ .+.... ...+.+. +....... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~--------------~e~~~~---~~~~~~~~~~~~~~~~~~~~ 60 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG---GKVVYVD--------------IEEEIE---ELTERLIGESLKGALDNLII 60 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEE--------------CCcchH---HHHHHHhhhhhccccccEEE
Confidence 378999999999999999998765432 5554432 221110 0111110 00000000 01
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
........+.++.++...+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 61 VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred EEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 112223445666778888999999999999999994 4555556666677666666799999999887543
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.15 E-value=1.4e-10 Score=113.80 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=92.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC--
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP-- 212 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~-- 212 (697)
.++|+|++|||||||++.|++.+.+. | +.+.|.- .....+..++...+ +... +...+ .....+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~----G-~~~~g~~~~~~~~~~~~~~~~~~~--~~~~----~~~~l-~~~~~~~~ 69 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE----G-YKVGGFYTEEVREGGKRIGFKIID--LDTG----EEGIL-ARVGFPSR 69 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C-CeEEEEEcHHHHhcCCccceEEEE--cCCC----CeEEc-cccCCCCC
Confidence 37899999999999999998765432 2 1111111 00011122222111 0000 00000 001111
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 213 ~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
....+....+||+++-+..+++..+.+|+++++|||. .++..+ ..+.+.+.++.+.|.++|+++|.. .+...+|++
T Consensus 70 ~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~-~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i 145 (174)
T PRK13695 70 PRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIG-KMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEI 145 (174)
T ss_pred CceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCC-cchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHH
Confidence 1112334569999999999999999999999999952 233322 445677777767789999988863 566789999
Q ss_pred EEEeCCeEEEE
Q 005423 293 CLLSNGNTLFF 303 (697)
Q Consensus 293 ~vL~~G~iv~~ 303 (697)
..+.+|++++.
T Consensus 146 ~~~~~~~i~~~ 156 (174)
T PRK13695 146 KSRPGGRVYEL 156 (174)
T ss_pred hccCCcEEEEE
Confidence 99999998765
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.15 E-value=4.9e-11 Score=138.04 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 220 NGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
..||||||||++||++|+ .+|++||||||| ++||+.....+.+.|+++ .|.|||+++|++ .....
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDPQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hchhh
Confidence 469999999999999887 599999999998 789999999999999998 578999988985 35578
Q ss_pred cCEEEEEeC-CeE
Q 005423 289 FDRICLLSN-GNT 300 (697)
Q Consensus 289 ~D~v~vL~~-G~i 300 (697)
||++++|.+ |+.
T Consensus 543 ~d~~~~l~~~~~~ 555 (562)
T PHA02562 543 FDRHLKMEKVGRF 555 (562)
T ss_pred hhcEEEEEEECCe
Confidence 999999985 553
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.10 E-value=6.9e-10 Score=113.06 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=89.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.+-+|+++..++|++++|.||||+||||+++.+++..--.. . |.........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~------G~~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--M------GMDVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--c------CCccCccccEeccc---cEEEEecCcccc
Confidence 467889999999999999999999999999999987521100 0 11111111112221 222222222222
Q ss_pred HHHHHHcCCCccccccCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST-GCTLLFTI 278 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSG--GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~-g~tvi~ti 278 (697)
+. .++|. .|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|+++
T Consensus 86 ~~---------------~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~T 150 (218)
T cd03286 86 IM---------------KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFST 150 (218)
T ss_pred cc---------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 21 12221 456666666666789999999999999999999888888 7888765 88999988
Q ss_pred ecCh
Q 005423 279 NQSS 282 (697)
Q Consensus 279 h~~~ 282 (697)
|...
T Consensus 151 H~~e 154 (218)
T cd03286 151 HYHS 154 (218)
T ss_pred ccHH
Confidence 8753
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.10 E-value=1.3e-10 Score=117.60 Aligned_cols=63 Identities=25% Similarity=0.386 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888876788999999873
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.09 E-value=3.2e-10 Score=125.50 Aligned_cols=167 Identities=17% Similarity=0.097 Sum_probs=117.3
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
+.-++++..+. ...++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|.+.|+..
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGerg-------- 194 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGERG-------- 194 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCCc--------
Confidence 44445554443 234578885 9999999999999999999999999999987754 7777666431
Q ss_pred EEcCccccCCCCCHHHHHHHHHHc-CCCc-cccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH
Q 005423 186 FVERETTLIGSLTVREYLYYSALL-QLPG-FFCQRKNGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e~l~~~~~l-~l~~-~~~~~~~~LSGGqrqRv~IA~aL~-------~~P~iLlLDEPTsgLD~~~ 256 (697)
.+|.|.+...... .+.. ..-....+-|.|+|+|++.+.+.+ .++-+|++||||+..|+.
T Consensus 195 -----------~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~- 262 (432)
T PRK06793 195 -----------REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR- 262 (432)
T ss_pred -----------ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH-
Confidence 3555554422111 1111 111344788999999999998888 789999999999999996
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
.+|-..+.+.-..|.+..+.+|++ ++++|.-...+|.|...+..
T Consensus 263 -reisl~~~e~p~~G~~~~~~s~l~-----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 263 -RSVDIAVKELPIGGKTLLMESYMK-----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred -HHHHHHhcCCCCCCeeeeeeccch-----hHHHHhccCCCcceEEEEEE
Confidence 555556666665577877766643 34555555678888776654
No 450
>PRK15066 inner membrane transport permease; Provisional
Probab=99.02 E-value=1.7e-07 Score=97.92 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Q 005423 405 SATRVAVLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGL-GHSLSSVVTRVAAIFVFVSFNSLLN----IAGV- 477 (697)
Q Consensus 405 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~lf~~l-~~~~~~i~~r~g~lff~~~~~~~~~----~~~v- 477 (697)
.++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-.. +.. .+. + -..|++.....+.. ....
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999854 3334455556667777665321 110 111 1 11222222222111 1111
Q ss_pred HHHHHhH--HHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 005423 478 PALMKEI--KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLM 555 (697)
Q Consensus 478 ~~~~~er--~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~ 555 (697)
..+..++ ....|=+.. --+...+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....+
T Consensus 82 ~~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~g 158 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGG 158 (257)
T ss_pred HHHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHH
Confidence 1222232 111111222 346778899999987766666665555555544466643 22223333333333334458
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHH
Q 005423 556 LVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGY 635 (697)
Q Consensus 556 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~ 635 (697)
++++.+.++.+....+.+.+..+++..+|.+.|.+.+|+ |.+|+.+++|++|..|++=.. +
T Consensus 159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~-~---------------- 219 (257)
T PRK15066 159 LINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYG-F---------------- 219 (257)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHH-H----------------
Confidence 888888888888888888889999999999999999986 667799999999999866422 1
Q ss_pred HHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005423 636 QALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 678 (697)
Q Consensus 636 ~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~ 678 (697)
+|. .....|.++++++++.+++.+++....|+.++
T Consensus 220 ------~g~--~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 220 ------LGI--SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ------cCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111 11235788899999999888888877765544
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=6.7e-10 Score=135.29 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred cccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 216 CQRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 216 ~~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
...+..|||||++ |++||++++.+|+++|+||||++||+..+..+.+.|..++..+.+||+++|++ ++...|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhC
Confidence 3456789999999 55566678899999999999999999999999999999887788899988886 466899
Q ss_pred CEEEEEe
Q 005423 290 DRICLLS 296 (697)
Q Consensus 290 D~v~vL~ 296 (697)
|++++|.
T Consensus 861 d~~~~l~ 867 (880)
T PRK03918 861 DYVIRVS 867 (880)
T ss_pred CeEEEEE
Confidence 9999997
No 452
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=2.3e-09 Score=123.01 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=83.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 293 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~ 293 (697)
++....|||||.||+-||..|=.+= =+.+||||+-||-+.--..++++|++|++.|-|+|++-|++ ++...||+|+
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iI 553 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHII 553 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEE
Confidence 4556899999999999999997763 36799999999999999999999999999999999977764 6778999999
Q ss_pred EE------eCCeEEEEeCchhhHHh
Q 005423 294 LL------SNGNTLFFGETLACLQH 312 (697)
Q Consensus 294 vL------~~G~iv~~G~~~~~~~~ 312 (697)
=| ++|+||+.|+++++++.
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 88 46899999999998754
No 453
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=2.4e-09 Score=103.97 Aligned_cols=139 Identities=22% Similarity=0.258 Sum_probs=84.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC---CCCCC--ceeEEEECCEeCCC-------CCccEEEEcCccccCCCCCHHHHHH
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL---PHSAR--MYGEVFVNGAKSEM-------PYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~---~~~~~--~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
-++.|+|+||+||||||.+|+-.. +.++. .+|++...+..... +....||-.. ..|++....
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR------AEs~yn~as 111 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR------AESFYNVAS 111 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe------hhHHHHHHH
Confidence 489999999999999999987543 33321 12333222211100 0111333222 222222222
Q ss_pred HHHHcCC-CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 205 YSALLQL-PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 205 ~~~~l~l-~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+...+.- .....+.-+..|-||-=---+.+. ..+--+.|||||-++|-+.-+..++..|+++++.|.-+|+.||.|.
T Consensus 112 ~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 112 YLDEADGEANYGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred HHHhhhhhcccCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 1111110 001122335678888654444444 4567899999999999999999999999999999988999999884
No 454
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.98 E-value=1.5e-09 Score=133.80 Aligned_cols=81 Identities=23% Similarity=0.185 Sum_probs=70.3
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh
Q 005423 216 CQRKNGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 287 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~ 287 (697)
.+.+..|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+++.|+||++++|.+ .....
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHh
Confidence 35678999999999999999996 8999999999999999999999999999998899999988854 34555
Q ss_pred ccCEEEEEeC
Q 005423 288 LFDRICLLSN 297 (697)
Q Consensus 288 ~~D~v~vL~~ 297 (697)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 6666777654
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.94 E-value=1.7e-08 Score=103.87 Aligned_cols=144 Identities=21% Similarity=0.278 Sum_probs=90.6
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
.+=+++|.++.|.|++|+|||||...++ +....+ +.+.+ +..+. +..+.+.-...
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~~~~y--------------~~~e~------~~~~~~~~~~~ 74 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----KKVYV--------------ITTEN------TSKSYLKQMES 74 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----CEEEE--------------EEcCC------CHHHHHHHHHH
Confidence 3457799999999999999999998874 222221 23322 22211 11111111111
Q ss_pred cCCC----------ccc---cccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHc
Q 005423 209 LQLP----------GFF---CQRKNGLPCGERRRVRIARELVM--RPHVLFIDEPLYH---LDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 209 l~l~----------~~~---~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsg---LD~~~~~~i~~~L~~l~~~ 270 (697)
++.. ... .......+.++++.+.....++. +|+++++||||+. +|......+++.++.+++.
T Consensus 75 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~ 154 (234)
T PRK06067 75 VKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL 154 (234)
T ss_pred CCCChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 1100 000 01123456788999999999998 9999999999965 4455555666667777778
Q ss_pred CCEEEEEEecChH------HHHhccCEEEEEeC
Q 005423 271 GCTLLFTINQSST------EVFGLFDRICLLSN 297 (697)
Q Consensus 271 g~tvi~tih~~~~------~i~~~~D~v~vL~~ 297 (697)
|.|+++++|++.. .+..++|-++.|+.
T Consensus 155 g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 155 GKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 9999998887542 14567888887863
No 456
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=4.9e-09 Score=128.00 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=66.0
Q ss_pred ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEEecChHHHHh
Q 005423 217 QRKNGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFG 287 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~I------A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~tih~~~~~i~~ 287 (697)
..+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|+++|++. ...
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 3567899999999975 589999999999999999999999999999998654 33 3 47888888863 457
Q ss_pred ccCEEEEEe
Q 005423 288 LFDRICLLS 296 (697)
Q Consensus 288 ~~D~v~vL~ 296 (697)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 899999997
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.89 E-value=6.4e-09 Score=104.50 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=75.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC 216 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~ 216 (697)
+++|.||+||||||++++|++.+++.. .|.|...+.+.+... ....++.|...-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~--~~~i~t~e~~~E~~~~~~~~~i~q~~vg----------------------- 57 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNK--THHILTIEDPIEFVHESKRSLINQREVG----------------------- 57 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC--CcEEEEEcCCccccccCccceeeecccC-----------------------
Confidence 689999999999999999998876431 266655443322111 111222221100
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 217 QRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.....++ =+|+++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++ +.+..||++.|.
T Consensus 58 ~~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 58 LDTLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred CCccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 0001111 15788999999999999996 655433333 44567999999999875 346788887664
No 458
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=6.7e-09 Score=129.83 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=67.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 216 CQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
...+..||||||+|++||++++ .+|+++||||||++||+.....+.++|+.+++ +.++|+++|++. ....||+
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~ 1160 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQ 1160 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhh
Confidence 4566789999999999999985 56799999999999999999999999999875 467888888864 3578999
Q ss_pred EEEEe
Q 005423 292 ICLLS 296 (697)
Q Consensus 292 v~vL~ 296 (697)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 98664
No 459
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=1e-08 Score=129.55 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=61.3
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEecChHHHH
Q 005423 218 RKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVF 286 (697)
Q Consensus 218 ~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~tih~~~~~i~ 286 (697)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||+++|++ ..+.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~ 1274 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVE 1274 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHH
Confidence 34689999999 99999999999999999999999999999999999988742 378899877765 4666
Q ss_pred hcc
Q 005423 287 GLF 289 (697)
Q Consensus 287 ~~~ 289 (697)
.+|
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 654
No 460
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.77 E-value=3.6e-08 Score=118.74 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=60.2
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEecChHH--------HHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~--------i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|++... +.+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 69999999999999998899999988887532 2368999999999998766643
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=2.4e-07 Score=84.84 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=79.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+|..+.|.||+|+||||+++.|++...... .+-+.++........ ..... ...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~---------~~~ 53 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEV----------------LDQLL---------LII 53 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccC----------------HHHHH---------hhh
Confidence 367899999999999999999999876531 134555443221100 00000 011
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------TLKKLASTGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~------~L~~l~~~g~tvi~tih 279 (697)
.........+++..+..++++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 54 VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 123335678888899888888888899999999999999988887665 22333345678888777
No 462
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.74 E-value=8.1e-09 Score=114.33 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (697)
+.+|++||+.+++||+++|+|||||||||||+ +|+..|.. .|+|.++|.+...
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECCC
Confidence 46899999999999999999999999999999 67766654 2489999987643
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.73 E-value=1.8e-08 Score=126.15 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=67.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
..+..||||||++++||++|+. +|+++|||||+++||+.....+.++|++++.. ..+|+++|++. +...||++
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhccee
Confidence 4567899999999999999985 67999999999999999999999999998754 66777788863 56899999
Q ss_pred EEEeC
Q 005423 293 CLLSN 297 (697)
Q Consensus 293 ~vL~~ 297 (697)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 98753
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=1.4e-07 Score=93.79 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=77.2
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CccEEEEcCcc--ccCCCCCHHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVERET--TLIGSLTVREY 202 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q~~--~l~~~lTV~e~ 202 (697)
+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ..+ ...++++.|.. ...+..++.+.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 33445677899999999999999999999999998765 8899877432 111 23345544432 23344555554
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEEecC
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLFTINQS 281 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t-vi~tih~~ 281 (697)
+. .+|-.+|++++++|--. ..+ .++++. +..|.. ++.|+|-.
T Consensus 93 l~-----------------------------~~lR~~pd~i~igEir~---~ea----~~~~~a-~~tGh~g~~~T~Ha~ 135 (186)
T cd01130 93 LR-----------------------------SALRMRPDRIIVGEVRG---GEA----LDLLQA-MNTGHPGGMTTIHAN 135 (186)
T ss_pred HH-----------------------------HHhccCCCEEEEEccCc---HHH----HHHHHH-HhcCCCCceeeecCC
Confidence 43 34456799999999863 332 234443 356777 88888865
Q ss_pred h
Q 005423 282 S 282 (697)
Q Consensus 282 ~ 282 (697)
+
T Consensus 136 s 136 (186)
T cd01130 136 S 136 (186)
T ss_pred C
Confidence 4
No 465
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.68 E-value=1.9e-06 Score=89.37 Aligned_cols=168 Identities=26% Similarity=0.314 Sum_probs=119.3
Q ss_pred HHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 005423 484 IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA-SIW 562 (697)
Q Consensus 484 r~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~f~l~~~l~~~~~~sl~~~i~-~~~ 562 (697)
...+.|=..+-..+ ..+++++.+...-...+...+...++.+..|.. ....+..+...+.+..+...++|.+++ ...
T Consensus 117 ~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 117 FGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444443 456666666666666566666666666666632 334455556666667777778888666 366
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCccccHHHHHhhhc
Q 005423 563 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAY 642 (697)
Q Consensus 563 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~~~G~~~L~~~~ 642 (697)
++.+.+..++..+..++++++|.+.|.+.+|. |..|+.++.|.+|+.+++-.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~--------------------- 251 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG--------------------- 251 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC---------------------
Confidence 77888888888999999999999999999996 7778999999999999876543321
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005423 643 DISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 679 (697)
Q Consensus 643 ~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~~~~~ 679 (697)
. .....|.++++|+++.+++.+++.+.+|++.+.
T Consensus 252 -~--~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 252 -W--RNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -C--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 112267888999999999999999988877653
No 466
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=4.9e-08 Score=119.12 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=66.2
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEecChHH
Q 005423 218 RKNGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 284 (697)
Q Consensus 218 ~~~~LSGGqrq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~tih~~~~~ 284 (697)
.+..||||||+ |++||++++.+ | +++|+||||++||+.....+.++|+.+...|. +||+++|++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 45689999999 99999999864 3 67999999999999999999999999986664 7888888863
Q ss_pred HHhccCEEEEEeC
Q 005423 285 VFGLFDRICLLSN 297 (697)
Q Consensus 285 i~~~~D~v~vL~~ 297 (697)
....||+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 3467999999964
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.62 E-value=1.4e-07 Score=97.53 Aligned_cols=134 Identities=23% Similarity=0.312 Sum_probs=75.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCccEEEEcCccccCCCCCHHHHHH-HHHHcCCCc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLY-YSALLQLPG 213 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~ 213 (697)
|++..|+||+|+|||||+-.++=-... |.=.+++ ... .....+-|+.-|+.. -.+.+.+. +...+.+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~---~~i~~Rl~~i~~~~~~~~ 71 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR---EEIHRRLEAILQHLEPDD 71 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---HHHHHHHHHHHhhcCCcC
Confidence 678899999999999999877632211 2111110 110 112334555433321 12232222 112221111
Q ss_pred cccccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHH-c
Q 005423 214 FFCQRKNGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY------HLDSVSALLMMVTLKKLAS-T 270 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~----------------aL~~~P~iLlLDEPTs------gLD~~~~~~i~~~L~~l~~-~ 270 (697)
...+. -..+|+.|++.+++ ....+|+++++| |++ .+|+.....+++.|+++++ .
T Consensus 72 ~~~rl--~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~ 148 (239)
T cd01125 72 AGDRL--FIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQT 148 (239)
T ss_pred cccce--EEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 11111 11245555555443 335799999999 775 4799999999999999985 4
Q ss_pred CCEEEEEEecC
Q 005423 271 GCTLLFTINQS 281 (697)
Q Consensus 271 g~tvi~tih~~ 281 (697)
|.+||+++|..
T Consensus 149 g~avl~v~H~~ 159 (239)
T cd01125 149 GAAILLVHHVR 159 (239)
T ss_pred CCEEEEEeccC
Confidence 88999966654
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.58 E-value=4.3e-07 Score=98.99 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=77.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
.+++.++.|.||+||||||++++|.+.++.. ..|.|.....+.+... .....+.|...
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~ev------------------- 177 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQREV------------------- 177 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEcccc-------------------
Confidence 3578899999999999999999999876532 1266655443322110 00111111100
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
+. ++.--.-+|+++|-.+|+++++||+. |..++...++ .+..|.+|+.|+|..+ +....+|
T Consensus 178 ---------g~-~~~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~R 238 (343)
T TIGR01420 178 ---------GL-DTLSFANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIER 238 (343)
T ss_pred ---------CC-CCcCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHH
Confidence 00 00111234677889999999999997 8888765444 3567999999888764 3355677
Q ss_pred EEEE
Q 005423 292 ICLL 295 (697)
Q Consensus 292 v~vL 295 (697)
++-|
T Consensus 239 l~~~ 242 (343)
T TIGR01420 239 IIDV 242 (343)
T ss_pred HHHh
Confidence 6544
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=7.3e-09 Score=117.86 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=94.0
Q ss_pred eeee-eeEEcCCcEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccc----c-
Q 005423 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETT----L- 193 (697)
Q Consensus 126 L~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L--~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~----l- 193 (697)
|+.+ .+=+.+|.++.|.|++|||||||...+ .|....+. ..+++....... ..+.+|+-.++.. +
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~ 86 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLF 86 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceE
Confidence 4443 445678999999999999999999866 45443232 445555432100 0112333222110 0
Q ss_pred CCCCCHHH-HHHHHHHcCCCccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 194 IGSLTVRE-YLYYSALLQLPGFFCQRKNGLPCGERRRVRIA--RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 194 ~~~lTV~e-~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+......+ .......+.+.+..++....+|+|++|||.|+ .+|...|+.. ...+..+.++++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~ 156 (484)
T TIGR02655 87 ILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI 156 (484)
T ss_pred EEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence 00000000 00000111122223344568999999999999 6666665544 46778899999999989
Q ss_pred CCEEEEEEecChHH-------H-HhccCEEEEEe
Q 005423 271 GCTLLFTINQSSTE-------V-FGLFDRICLLS 296 (697)
Q Consensus 271 g~tvi~tih~~~~~-------i-~~~~D~v~vL~ 296 (697)
|.|+|+++|+.... + ..+||.|+.|+
T Consensus 157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 99999999875421 2 55899999997
No 470
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.55 E-value=8.7e-07 Score=99.10 Aligned_cols=150 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------------CCccEEEEcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------------PYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------------~~~~~~yv~Q 189 (697)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..... ..+.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 4689999 9999999999999999999999999999987754 666555542110 0122223322
Q ss_pred ccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHH-----HHHHHHhh-CCCE------------------EEE
Q 005423 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRV-----RIARELVM-RPHV------------------LFI 245 (697)
Q Consensus 190 ~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv-----~IA~aL~~-~P~i------------------LlL 245 (697)
-+. |-++|.+. ++|.-+.- .-+| +.+
T Consensus 227 ~d~------------------------------~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ 276 (440)
T TIGR01026 227 SDQ------------------------------SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAA 276 (440)
T ss_pred CCC------------------------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhc
Confidence 211 11222211 11111110 1111 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 246 DEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 246 DEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.|| +.|+|+.....+-+++.+....+. ||++..|+. ...++|++.-+.+|+++..+...+.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhhC
Confidence 575 449999999999999999886555 555544443 2347999999999999998876553
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.41 E-value=3.2e-07 Score=101.95 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=109.1
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCccEEEEcCc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 190 (697)
..++++++ +.+.+||.++|+|+||+|||||+++|+|..+++..+-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 999999999999999999999999999998776423355555553321 123468999999
Q ss_pred cccCCCCCHHHHHHHHHHcCCCccccc--cCCCCC-HHHHHH-HHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 005423 191 TTLIGSLTVREYLYYSALLQLPGFFCQ--RKNGLP-CGERRR-VRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTL 264 (697)
Q Consensus 191 ~~l~~~lTV~e~l~~~~~l~l~~~~~~--~~~~LS-GGqrqR-v~IA~aL~~~P~iLlLDEP--TsgLD~~~~~~i~~~L 264 (697)
...+..+++.+++...+...-....+- -...|+ --|-+| ++ +.+.|| +.|-.+..-..+-+++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REis-----------l~~ge~P~~~Gyp~svf~~l~~l~ 289 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA-----------LSLGEPPATKGYPPSAFSIIPRLA 289 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHH-----------HhcCCCCcccCcCHHHHHHhHHHH
Confidence 999889999999876553211000000 000110 011111 11 134465 2367777777777777
Q ss_pred HHHH--H-cC-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEE
Q 005423 265 KKLA--S-TG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 303 (697)
Q Consensus 265 ~~l~--~-~g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~ 303 (697)
.+.- + .| .|.+-++.-+.+++.+ ++|.+.-+-||+|+..
T Consensus 290 ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 290 ESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred HHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 7753 1 23 5777777666544433 5788888889999864
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.32 E-value=2.4e-06 Score=96.26 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=48.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
++++.+..+.+|++++++||||+||||++..|++.+.... |. ..++++.+|.. ..++.|+|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt~---RigA~EQLr 306 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDSY---RIGGHEQLR 306 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCcc---chhHHHHHH
Confidence 4566777788899999999999999999999999764322 31 24567777652 357888887
Q ss_pred HHH
Q 005423 205 YSA 207 (697)
Q Consensus 205 ~~~ 207 (697)
+.+
T Consensus 307 ~~A 309 (484)
T PRK06995 307 IYG 309 (484)
T ss_pred HHH
Confidence 643
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.6e-06 Score=106.14 Aligned_cols=79 Identities=25% Similarity=0.266 Sum_probs=69.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 217 QRKNGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
+....|||||+-.++||-+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++++|++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 556889999999888877764 35 699999999999999999999999999998899999988875 67789
Q ss_pred cCEEEEEeC
Q 005423 289 FDRICLLSN 297 (697)
Q Consensus 289 ~D~v~vL~~ 297 (697)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999863
No 474
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.32 E-value=5.4e-06 Score=79.87 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred HhHHHhHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhHhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005423 482 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS--LLMYFVLNFFMCLLVNEGLMLVVA 559 (697)
Q Consensus 482 ~er~vf~rE~~~g~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~--~f~~f~l~~~l~~~~~~sl~~~i~ 559 (697)
.|+.++.|-+..-. +...++++|++...-..+++.++..++.++ .|.+.... ..+.++++..++.+....++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766 688999999999998988888877777754 48876632 222333333344445556666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHH
Q 005423 560 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLL 615 (697)
Q Consensus 560 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~ 615 (697)
...++.+... ....++.++++.+|.+.|.+.+|+ |..|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 6666655433 346677788888888899999996 8888999999999999874
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.30 E-value=6.1e-07 Score=89.86 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=61.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---CCC----CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---EMP----YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
+++|.||||||||||.++|++++.. |.+.+-+.+. ... ....+...+.+.-+ ...........++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PKVVIISQDSYYKDLSHEELEERKNNNYDHPDAF---DFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CCeEEEEecccccccccccHHHhccCCCCCCCcc---cHHHHHHHHHHHH
Confidence 4799999999999999999998732 3343333221 000 01111112221111 1111111112233
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
..+....+....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 73 ~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 73 NGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred CCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 3333445556788888876655 5788999999999999886
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=3.5e-06 Score=101.89 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=84.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
.+-+|+++. ..+.++.|.|||++||||+||.++-..- ... | ..+......++++. .++..
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~---G------~~VPa~~a~i~~~d---~I~tr------ 656 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQI---G------SFVPAESARIGIVD---RIFTR------ 656 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhc---C------CceeccceEecccC---eeeec------
Confidence 455666666 5678999999999999999999864310 000 1 11111111122211 11111
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLF 276 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~ 276 (697)
+. ..+.-..++|.=+.....++..|-. +++++|+||| |+.+|..+ .....++.+.+. |.++|+
T Consensus 657 --------ig-a~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~ 725 (854)
T PRK05399 657 --------IG-ASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLF 725 (854)
T ss_pred --------cC-cccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEE
Confidence 11 1122335677777777777777655 9999999999 99999444 345566666655 578888
Q ss_pred EEecChHHHHhccCE
Q 005423 277 TINQSSTEVFGLFDR 291 (697)
Q Consensus 277 tih~~~~~i~~~~D~ 291 (697)
+||. .++.+++++
T Consensus 726 aTH~--~el~~l~~~ 738 (854)
T PRK05399 726 ATHY--HELTELEEK 738 (854)
T ss_pred Eech--HHHHHHhhh
Confidence 8887 367777775
No 477
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.26 E-value=2.1e-06 Score=87.89 Aligned_cols=155 Identities=18% Similarity=0.111 Sum_probs=80.1
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccCCCCCHHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.+=+++|++++|.|++|+|||||+..++ ++. .+. +.+++....... ..+..++..|+....+.+.+.|.+
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~---~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGD---PVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDAL 89 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCC---eEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcc
Confidence 3557799999999999999999998655 433 332 456665432110 011233333321111111111110
Q ss_pred HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC--CHHHHHHHHHHHHH-HHHcCCEEEE
Q 005423 204 YYSALLQLPGFFCQRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHL--DSVSALLMMVTLKK-LASTGCTLLF 276 (697)
Q Consensus 204 ~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~-l~~~g~tvi~ 276 (697)
.. .........+++-.+ -..-++.++ .+|+++++|.++.-+ ++....+++..|++ +++.|.|+++
T Consensus 90 ~~------~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil 161 (229)
T TIGR03881 90 MK------EKEDEWSLRELSIEE--LLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILL 161 (229)
T ss_pred cc------ccccccccccCCHHH--HHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 000000012233222 222222322 257788888887642 34344455554554 4567999999
Q ss_pred EEecCh-------HHHHhccCEEEEEe
Q 005423 277 TINQSS-------TEVFGLFDRICLLS 296 (697)
Q Consensus 277 tih~~~-------~~i~~~~D~v~vL~ 296 (697)
+.|... ..+..+||.|+.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 162 TSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred EecccccCCCCcccceEEEEeEEEEEE
Confidence 888532 13456789999887
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=2.2e-06 Score=95.51 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=109.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~- 178 (697)
...+..++++..+.. ...+++.++ .+.+||.++|+||||||||||+++|+|+.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 345788899888753 357888886 899999999999999999999999999988764 88888653 221
Q ss_pred --------CCCccEEEEcCccccC--------CCCCHHHHHHHHHHcCCCccccccCCCCCH-HHHHH-HHHHHHHhhCC
Q 005423 179 --------MPYGSYGFVERETTLI--------GSLTVREYLYYSALLQLPGFFCQRKNGLPC-GERRR-VRIARELVMRP 240 (697)
Q Consensus 179 --------~~~~~~~yv~Q~~~l~--------~~lTV~e~l~~~~~l~l~~~~~~~~~~LSG-GqrqR-v~IA~aL~~~P 240 (697)
...+.+++|+|.+.-. ..+|+.|.++-. +..-. --...|+- -|-+| +++
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~---G~~Vl--l~~DslTr~A~A~rEisl-------- 275 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDR---GENVL--LIVDSVTRFAHAAREVAL-------- 275 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHc---CCCEE--EeccchHHHHHHHHHHHH--------
Confidence 1135689999976421 112333333210 10000 00011110 11111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--c--C-CEEEEEEecChHHHHh-ccCEEEEEeCCeEEEE
Q 005423 241 HVLFIDEP--LYHLDSVSALLMMVTLKKLAS--T--G-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 303 (697)
Q Consensus 241 ~iLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~--g-~tvi~tih~~~~~i~~-~~D~v~vL~~G~iv~~ 303 (697)
.+.|| +.|-.+..-..+-+++.+... + | .|.+-|+..+..++.+ ++|.+.-+-||+++-.
T Consensus 276 ---~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 276 ---AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred ---hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 23455 336666666677777777653 2 3 5777777776655433 6777777889998864
No 479
>PRK13764 ATPase; Provisional
Probab=98.23 E-value=8.1e-06 Score=94.22 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=80.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
+++..+.|.||+||||||++++|+..++.. |.+ ++.+ +.. + .+ +. .+- +.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~----~riV~TiED-----p~E---l-----~~-~~-~i~---------q~ 306 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADM----GKIVKTMES-----PRD---L-----QV-PP-EIT---------QY 306 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhC----CCEEEEECC-----Ccc---c-----cC-CC-cce---------EE
Confidence 456779999999999999999999887643 322 2221 110 0 00 00 000 00
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec-----------
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ----------- 280 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~----------- 280 (697)
. .+-+...+ .....|..+|+++++||.-..-| ++++..++..|..++.|+|-
T Consensus 307 ----~----~~~~~~~~--~~~~lLR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~ 369 (602)
T PRK13764 307 ----S----KLEGSMEE--TADILLLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFI 369 (602)
T ss_pred ----e----eccccHHH--HHHHHHhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHH
Confidence 0 00011111 11223788999999999974322 45555566567788988882
Q ss_pred ---ChHHHHhccCEEEEEeCCeE--EEEeCch
Q 005423 281 ---SSTEVFGLFDRICLLSNGNT--LFFGETL 307 (697)
Q Consensus 281 ---~~~~i~~~~D~v~vL~~G~i--v~~G~~~ 307 (697)
+...+...+|+|+.+++|++ +|.++..
T Consensus 370 ~~v~lg~i~~iID~IV~I~~G~I~~v~~~~~~ 401 (602)
T PRK13764 370 GRVELGMIPQIVDTVIFIEDGEVSKVYDLEFT 401 (602)
T ss_pred hhhhhchHHHhhcEEEEEeCCEEEEEEeeeeE
Confidence 33466778999999999999 7877643
No 480
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.22 E-value=1.2e-05 Score=97.67 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHh--ccCEEEEEeCCeEE
Q 005423 232 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG--LFDRICLLSNGNTL 301 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~--~~D~v~vL~~G~iv 301 (697)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999988999999888775 4443 23333333344443
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.18 E-value=2.3e-06 Score=108.23 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=51.7
Q ss_pred cCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 218 RKNGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 218 ~~~~LSGGqrqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
..++||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++++.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35899999999996 5655 55899999999999999999999999999888 6788886654
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=7.3e-06 Score=102.86 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCC--HHHHHHHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT--VREYLYYS 206 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT--V~e~l~~~ 206 (697)
+++..+.+++++|+|++|+|||||++++.+..... ..|.+.+++......... +-.++.... ... ..+.+ ..
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~--~~~~~~~~~-~~~~~l~~~~-l~ 273 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEI--YSSANPDDY-NMKLHLQRAF-LS 273 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhh--ccccccccc-chhHHHHHHH-HH
Confidence 34566789999999999999999999998765432 358998876322111110 101110000 111 11111 11
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEEEEecChH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA---STGCTLLFTINQSST 283 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~---~~g~tvi~tih~~~~ 283 (697)
..++..+ .....+ ++.|+| |..++-+|+||+- |.. ..++.|.... ..|.+||+|+|+..
T Consensus 274 ~il~~~~---~~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~- 335 (1153)
T PLN03210 274 EILDKKD---IKIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKH- 335 (1153)
T ss_pred HHhCCCC---cccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHH-
Confidence 1111111 111122 555655 3355567788984 433 3344444432 35788999888653
Q ss_pred HHHhc-cCEEEEEeCCeEEEEeCchhhHHhhhhcCC
Q 005423 284 EVFGL-FDRICLLSNGNTLFFGETLACLQHFSNAGF 318 (697)
Q Consensus 284 ~i~~~-~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~ 318 (697)
.+... +|+++.+.. =+.+++.+.|...-+
T Consensus 336 vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 336 FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 33222 677665531 134567777766533
No 483
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=7.5e-06 Score=75.69 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
.+..+.|.||+|+|||||++.++....... ..+ .++....... +. .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v--------------~~~~~~~~~~------~~-~~~~~~~~~-- 71 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG---APF--------------LYLNASDLLE------GL-VVAELFGHF-- 71 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCe--------------EEEehhhhhh------hh-HHHHHhhhh--
Confidence 477899999999999999999998764211 112 2221111000 00 000000000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEecC
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 281 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~tih~~ 281 (697)
++..........++.++++||.-.. +......+.+.+..+.. .+..+|++++.+
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4556666677889999999998765 56667788888888753 467777766654
No 484
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.08 E-value=7.5e-06 Score=92.39 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=81.4
Q ss_pred eeee-eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE-EEECCEeCCCC----CccEEEEcCccccCCCCCH
Q 005423 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE-VFVNGAKSEMP----YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 126 L~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~-I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV 199 (697)
|+.+ .+=+.+|+++.|.|++|+|||||+..++......+ ++ +++.++..... ...+++..++..++.
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~---- 155 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLS---- 155 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcC----
Confidence 4443 24577999999999999999999999887654322 33 45555421100 011221111111111
Q ss_pred HHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-
Q 005423 200 REYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL-VMRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA- 268 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLDEPTsgL----D-----~~~~~~i~~~L~~l~- 268 (697)
+.+-. .|..++ -.+|+++++|.-++=. + .....+++..|.+++
T Consensus 156 ---------------------e~~~~-----~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak 209 (454)
T TIGR00416 156 ---------------------ETNWE-----QICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAK 209 (454)
T ss_pred ---------------------CCCHH-----HHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHH
Confidence 01111 111111 2479999999876521 1 223445666677775
Q ss_pred HcCCEEEEEEecChH-------HHHhccCEEEEEeCCe
Q 005423 269 STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 299 (697)
Q Consensus 269 ~~g~tvi~tih~~~~-------~i~~~~D~v~vL~~G~ 299 (697)
+.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 210 ~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 210 TRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 569999998775432 2567899999998654
No 485
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.08 E-value=3.1e-06 Score=84.14 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH--HHHHcCCCccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY--YSALLQLPGFF 215 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~--~~~~l~l~~~~ 215 (697)
+++|.|..||||||+.+.|.-.. |-..++-... .+ ..+-+...+.+.+. |+... .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~---~~--------~~~~~~~~~~~~i~~~fg~~i-----~ 57 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKI---AH--------QVVEKGSPAYEKIVDHFGAQI-----L 57 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHH---HH--------HHHhcCChHHHHHHHHHCHHH-----h
Confidence 37999999999999999998652 1111221100 00 00111223444331 22111 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH-HHHhccCEEEE
Q 005423 216 CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICL 294 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~-~i~~~~D~v~v 294 (697)
+ -.|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..+.|.+|++.+|.... .....||.+++
T Consensus 58 ~------~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~ 129 (188)
T TIGR00152 58 N------EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIV 129 (188)
T ss_pred C------CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEE
Confidence 0 1388999999999999999988887 7899999999999999887667788887776531 35678999988
Q ss_pred EeC
Q 005423 295 LSN 297 (697)
Q Consensus 295 L~~ 297 (697)
++.
T Consensus 130 V~~ 132 (188)
T TIGR00152 130 VDV 132 (188)
T ss_pred EEC
Confidence 764
No 486
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.07 E-value=3e-06 Score=83.66 Aligned_cols=65 Identities=25% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CccEEEEcCccccCCCCCHHHHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 45666553221 11245556655444555666666554
No 487
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.06 E-value=2.3e-05 Score=82.32 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=76.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCcc----EEEEcCccccCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGS----YGFVERETTLIGS 196 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~----~~yv~Q~~~l~~~ 196 (697)
+.|+++.+-+.+|+++.|.|++|+|||||+..++-...... ...|.+-..... ...+. .+.-.+...-...
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~ 95 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFI 95 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHHHHHHhCCCcccCCcccc
Confidence 45777777788999999999999999999988765432110 023333221100 00000 0110000000001
Q ss_pred CCHHHHHHHHHH-cCCCcc-ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHHHHHHHHH
Q 005423 197 LTVREYLYYSAL-LQLPGF-FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS--------VSALLMMVTL 264 (697)
Q Consensus 197 lTV~e~l~~~~~-l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~--------~~~~~i~~~L 264 (697)
.+..+.-..... .+.+.. ........+ ..+-+..++.++ .+|+++++|..+.-.+. ....+++..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L 173 (271)
T cd01122 96 YTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL 173 (271)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHH
Confidence 121111111111 111111 011111112 234455555555 37999999998774432 1245677778
Q ss_pred HHHH-HcCCEEEEEEec
Q 005423 265 KKLA-STGCTLLFTINQ 280 (697)
Q Consensus 265 ~~l~-~~g~tvi~tih~ 280 (697)
++++ +.+.||++++|-
T Consensus 174 ~~la~~~~vtvll~sq~ 190 (271)
T cd01122 174 RGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHhCCEEEEEecc
Confidence 8887 468999987654
No 488
>PRK04296 thymidine kinase; Provisional
Probab=98.05 E-value=2.5e-05 Score=78.06 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
.+++++++||- --|| ..+|.++++.++..|.+||++-+. +...+..++|.|..|+
T Consensus 77 ~~~dvviIDEa-q~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 77 EKIDCVLIDEA-QFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCEEEEEcc-ccCC---HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 47899999999 2243 344778888888899999999888 6678899999999886
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.04 E-value=1.7e-05 Score=86.75 Aligned_cols=123 Identities=23% Similarity=0.255 Sum_probs=70.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+++... ...+.+.|...--...+ |
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~------~---- 201 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNN------F---- 201 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccC------H----
Confidence 489999999999999999999999987422101135544333332111 11244444321000001 1
Q ss_pred CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 210 QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 210 ~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
.-+|-.+|=.+|+++++.|- =|..+....+ +.+..|.-|+.|+|-.+ +.+..
T Consensus 202 -------------------~~~l~~aLR~~Pd~i~vGEi---Rd~et~~~al----~aa~tGh~v~tTlHa~~--~~~~i 253 (358)
T TIGR02524 202 -------------------AAGVRNALRRKPHAILVGEA---RDAETISAAL----EAALTGHPVYTTLHSSG--VAETI 253 (358)
T ss_pred -------------------HHHHHHHhccCCCEEeeeee---CCHHHHHHHH----HHHHcCCcEEEeeccCC--HHHHH
Confidence 11122366679999999994 3555554433 23457888998888754 34445
Q ss_pred CEEEE
Q 005423 290 DRICL 294 (697)
Q Consensus 290 D~v~v 294 (697)
+|++-
T Consensus 254 ~Rl~~ 258 (358)
T TIGR02524 254 RRLVG 258 (358)
T ss_pred HHHHH
Confidence 55443
No 490
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.02 E-value=0.00074 Score=70.06 Aligned_cols=220 Identities=12% Similarity=0.140 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005423 410 AVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSG---L-GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 485 (697)
Q Consensus 410 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~lf~~---l-~~~~~~i~~r~g~lff~~~~~~~~~~~~v~~~~~er~ 485 (697)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|.. . ..+..+.+. .| ... .+..+..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~----~f-~~~--~~~~~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP----FF-SLA--PWVFLFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH----HH-HHH--HHHHHHHHHHH--HHH
Confidence 46789999999999998887777777766442 22211 0 111122221 11 110 11111122322 225
Q ss_pred HhHhhccCCCc--------chHHHHHHHHHHHHhHHHHHHH---hHhhhhhccccc---cccHHHHHHHHHHHHHHHHHH
Q 005423 486 TYASEESNMHS--------GALVFLLGQLLSSIPFLFLISI---SSSLVFYFLVGL---RDEFSLLMYFVLNFFMCLLVN 551 (697)
Q Consensus 486 vf~rE~~~g~Y--------~~~ay~la~~l~elP~~~~~~~---if~~i~Y~m~Gl---~~~~~~f~~f~l~~~l~~~~~ 551 (697)
.+-+||++|.. +...++++|.++-+-..++..+ ++....++ .|. ..+...++...+.+++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 56777777775 3567899999987655443322 22222222 122 224455544444455556677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCccCCCCCcc
Q 005423 552 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRT 631 (697)
Q Consensus 552 ~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yiSp~~Ya~e~l~~nef~g~~~~~~~~~~ 631 (697)
.++|.++++++.+...|..++..+...+ +.|+-. ..+++.+.|..|+.|+||..|-.+..
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~----------------- 210 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLF--YFGFDG-LASLLWGGSAYTISELGLSYHYESIS----------------- 210 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHH--HHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----------------
Confidence 8999999999999888876554432222 222211 12232123566799999976643211
Q ss_pred ccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 005423 632 ISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 675 (697)
Q Consensus 632 ~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~v~~~~l~~i~L~~ 675 (697)
+ |. -.|.++...+.+.+++..++...++.
T Consensus 211 -------~---g~-----i~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 211 -------R---GV-----IDSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------c---Cc-----ccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11 01456667777777777777665543
No 491
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.00 E-value=1.2e-05 Score=70.50 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=38.7
Q ss_pred cccCCCCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 216 CQRKNGLPCGERR-RVRIAREL------VM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 216 ~~~~~~LSGGqrq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+...++|||||| .+.+|.++ -. .|++++||||+++||......++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3456899999994 44443332 22 3799999999999999999999999875
No 492
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=1e-05 Score=84.82 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 220 NGLPCGERRRVRIARELVM--RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+.||-|+-|-+++|.+|+. .|.+|++|||-++|-|..-..+...++..++.+ -|++++|.+.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 5899999999999999987 589999999999999999999999999988776 5666678664
No 493
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.99 E-value=0.0001 Score=89.23 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 235 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.+..+|.++++|||...|| +..+..+.+.++.+++.|.++++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3556899999999999999 88999999999999988889888888764
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.98 E-value=8.4e-06 Score=66.09 Aligned_cols=35 Identities=46% Similarity=0.485 Sum_probs=27.4
Q ss_pred eeeeEEcC-CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 128 SSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 128 ~vs~~v~~-Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+.++.+.+ |+++.|.|+||||||||+++|.=.+-+
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555554 679999999999999999999765543
No 495
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.97 E-value=5.1e-05 Score=75.10 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=38.2
Q ss_pred ccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 217 QRKNGLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
.+...+++||+|++. +++.+-. +++++ |||++|.....++.+.|.++.++
T Consensus 143 nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 143 TKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445678999999987 5555543 33443 99999999999999999988754
No 496
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.95 E-value=1.5e-05 Score=90.56 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=51.7
Q ss_pred EEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
++|++..+ +.+.+++++++.+..|+.++|+||||+|||||++.|.|++++.. |++.+++..+
T Consensus 187 ~~d~~~v~-----Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~---g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVI-----GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS---NEEALESAAI 248 (506)
T ss_pred ccCeEEEE-----CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCC---CcEEEecchh
Confidence 34666544 23468899999999999999999999999999999999999865 8888877653
No 497
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.95 E-value=0.0001 Score=75.37 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh--------HHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTs------gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~--------~~i~~~~D~v~vL~ 296 (697)
+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68899999 544 44566677888999999989999999888531 23567899999994
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.91 E-value=0.00016 Score=79.63 Aligned_cols=136 Identities=21% Similarity=0.312 Sum_probs=76.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCC----CccEEEEcCccccCCCCCHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+=+.+|+++.|.|++|+|||||+..++....... +.+ ++.++..... .+.+++..++..+...
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e--------- 144 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGISTENLYLLAE--------- 144 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEcc---------
Confidence 3467999999999999999999999987654332 444 3444321000 0111111111111110
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHH-HcCCEEE
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----HLD-----SVSALLMMVTLKKLA-STGCTLL 275 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----gLD-----~~~~~~i~~~L~~l~-~~g~tvi 275 (697)
..-.+- . ...--.+|+++++|+-.+ .+| .....+++..|.+++ +.+.|++
T Consensus 145 ----------------~~le~I--~--~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvi 204 (372)
T cd01121 145 ----------------TNLEDI--L--ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIF 204 (372)
T ss_pred ----------------CcHHHH--H--HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 111110 0 111124899999999643 333 122345566666766 5688888
Q ss_pred EEEecCh-------HHHHhccCEEEEEeCC
Q 005423 276 FTINQSS-------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 276 ~tih~~~-------~~i~~~~D~v~vL~~G 298 (697)
++.|-.. ..+.+++|.|+.++.+
T Consensus 205 lvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 205 IVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred EEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 8655322 1367789999998744
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=97.89 E-value=6.1e-05 Score=78.97 Aligned_cols=140 Identities=22% Similarity=0.253 Sum_probs=81.3
Q ss_pred EEEEeEEEEEeccc-ccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 106 VVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 106 l~~~~ls~~~~~~~-~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
-.+++..+++..+. +.....|.++++ +++|+.+.|+||+|+|||+|+.+|+......+ .+|.
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~------------- 134 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVR------------- 134 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEE-------------
Confidence 34555555543211 111235777787 99999999999999999999999976532211 1222
Q ss_pred EEEcCccccCCCCCHHHHHH-HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 005423 185 GFVERETTLIGSLTVREYLY-YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMV 262 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~-~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~ 262 (697)
|+ +..+.+. +... ....+ -.+ +-...+..|+++++||--. .+|...+..+.+
T Consensus 135 -~~----------~~~~l~~~l~~a--------~~~~~-----~~~--~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~ 188 (259)
T PRK09183 135 -FT----------TAADLLLQLSTA--------QRQGR-----YKT--TLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ 188 (259)
T ss_pred -EE----------eHHHHHHHHHHH--------HHCCc-----HHH--HHHHHhcCCCEEEEcccccCCCChHHHHHHHH
Confidence 21 1112110 0000 00000 111 1112257899999999953 477777778888
Q ss_pred HHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 263 TLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 263 ~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
++....+.+ ++|+|++.+..+..+.+
T Consensus 189 li~~r~~~~-s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 189 VIAKRYEKG-SMILTSNLPFGQWDQTF 214 (259)
T ss_pred HHHHHHhcC-cEEEecCCCHHHHHHHh
Confidence 887766555 46666777766654443
No 500
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.88 E-value=2.9e-05 Score=90.87 Aligned_cols=108 Identities=24% Similarity=0.231 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-----
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY----- 204 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~----- 204 (697)
..+.++|+||||+|||||++++.+..++.. ...+-|.+||.......+.+ +. .++.. +.+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i----~~-~llg~--~~~~~~~~a~~ 246 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV----TN-PLLGS--VHDPIYQGARR 246 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH----hH-HhcCC--ccHHHHHHHHH
Confidence 356799999999999999999998764321 01245777775432111100 00 11111 111111
Q ss_pred HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 205 YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 205 ~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
..+..+++.........+||| +||||| +..||...+..+++.|++
T Consensus 247 ~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 247 DLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 011223333334445677777 999999 899999999998888865
Done!