Query 005423
Match_columns 697
No_of_seqs 544 out of 4294
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 00:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.6E-45 5.5E-50 397.8 25.8 202 105-311 24-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 5.1E-45 1.8E-49 396.1 26.2 198 105-311 3-223 (381)
3 3tif_A Uncharacterized ABC tra 100.0 5.1E-45 1.7E-49 373.8 24.7 198 106-309 2-232 (235)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 3.3E-45 1.1E-49 395.1 24.0 198 105-311 4-228 (359)
5 3gfo_A Cobalt import ATP-bindi 100.0 8.4E-45 2.9E-49 380.1 25.4 199 105-311 7-233 (275)
6 1b0u_A Histidine permease; ABC 100.0 1.1E-44 3.7E-49 377.2 23.8 198 105-311 6-242 (262)
7 2olj_A Amino acid ABC transpor 100.0 1.5E-44 5.2E-49 375.9 24.3 198 105-311 24-248 (263)
8 2pcj_A ABC transporter, lipopr 100.0 3.4E-44 1.2E-48 365.0 25.6 192 105-306 4-223 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.8E-44 1.3E-48 371.6 26.1 199 105-312 15-236 (256)
10 1ji0_A ABC transporter; ATP bi 100.0 2.6E-44 8.9E-49 369.6 23.9 197 105-310 6-227 (240)
11 2yyz_A Sugar ABC transporter, 100.0 7.3E-44 2.5E-48 385.4 26.4 198 105-311 3-223 (359)
12 1g6h_A High-affinity branched- 100.0 5.2E-44 1.8E-48 371.1 23.4 195 105-308 7-239 (257)
13 1g29_1 MALK, maltose transport 100.0 1E-43 3.5E-48 386.5 26.4 198 105-311 3-229 (372)
14 2it1_A 362AA long hypothetical 100.0 8.3E-44 2.8E-48 385.4 25.5 198 105-311 3-223 (362)
15 1z47_A CYSA, putative ABC-tran 100.0 8.8E-44 3E-48 384.0 25.5 200 104-311 13-235 (355)
16 4g1u_C Hemin import ATP-bindin 100.0 1.8E-43 6.1E-48 368.7 26.4 197 105-310 11-236 (266)
17 1oxx_K GLCV, glucose, ABC tran 100.0 7.4E-44 2.5E-48 385.3 22.6 198 105-311 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 1.4E-43 5E-48 384.8 24.7 198 105-311 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-43 5.3E-48 381.6 23.7 196 106-311 2-217 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 2.5E-43 8.5E-48 362.2 22.4 194 106-311 2-216 (240)
21 2yz2_A Putative ABC transporte 100.0 1.2E-42 4.1E-47 362.6 25.1 204 105-312 2-228 (266)
22 3nh6_A ATP-binding cassette SU 100.0 9.1E-43 3.1E-47 369.6 21.4 196 105-311 53-277 (306)
23 2ihy_A ABC transporter, ATP-bi 100.0 9.4E-43 3.2E-47 365.6 20.9 197 105-310 21-251 (279)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 2E-42 6.7E-47 357.8 21.3 194 105-307 3-229 (250)
25 2ff7_A Alpha-hemolysin translo 100.0 2.5E-42 8.6E-47 356.3 22.0 197 104-310 6-231 (247)
26 2ixe_A Antigen peptide transpo 100.0 2.1E-42 7.1E-47 361.7 19.6 199 105-311 16-245 (271)
27 2nq2_C Hypothetical ABC transp 100.0 1.1E-41 3.9E-46 352.6 23.3 189 105-310 4-216 (253)
28 2zu0_C Probable ATP-dependent 100.0 1.5E-41 5E-46 354.5 23.5 204 105-318 20-260 (267)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-41 4.5E-46 351.2 21.5 192 105-310 4-221 (249)
30 1mv5_A LMRA, multidrug resista 100.0 3.9E-42 1.3E-46 354.1 15.9 195 106-311 2-226 (243)
31 2ghi_A Transport protein; mult 100.0 4.5E-41 1.5E-45 349.6 20.7 197 105-311 17-242 (260)
32 2pjz_A Hypothetical protein ST 100.0 1.2E-40 4.1E-45 346.6 23.1 194 106-311 2-215 (263)
33 2pze_A Cystic fibrosis transme 100.0 5.4E-41 1.8E-45 342.6 19.3 189 105-311 6-218 (229)
34 1sgw_A Putative ABC transporte 100.0 3.4E-41 1.2E-45 340.4 14.9 186 103-300 8-210 (214)
35 2cbz_A Multidrug resistance-as 100.0 8.6E-41 2.9E-45 342.8 17.7 189 105-311 3-217 (237)
36 3gd7_A Fusion complex of cysti 100.0 6.5E-41 2.2E-45 366.1 17.4 197 104-311 18-242 (390)
37 3qf4_A ABC transporter, ATP-bi 100.0 2.4E-39 8.2E-44 373.0 21.0 198 104-311 340-566 (587)
38 4a82_A Cystic fibrosis transme 100.0 3.7E-39 1.3E-43 371.0 21.1 198 104-311 338-564 (578)
39 3b5x_A Lipid A export ATP-bind 100.0 5.8E-39 2E-43 369.7 22.4 198 104-311 340-567 (582)
40 3b60_A Lipid A export ATP-bind 100.0 4.7E-39 1.6E-43 370.5 20.3 197 105-311 341-567 (582)
41 2yl4_A ATP-binding cassette SU 100.0 7.5E-39 2.6E-43 369.7 21.7 197 106-311 342-570 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 3.1E-39 1E-43 373.0 18.2 197 104-311 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.7E-38 5.9E-43 334.7 16.5 184 105-311 40-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.7E-37 5.7E-42 386.2 18.1 198 105-311 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 1.1E-36 3.8E-41 378.7 21.5 198 105-311 415-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 5E-36 1.7E-40 372.0 20.7 199 104-311 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.2E-35 4E-40 368.7 18.5 199 104-311 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2E-34 6.9E-39 331.9 20.8 191 103-311 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-34 1.4E-38 325.9 21.8 191 103-311 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1E-33 3.5E-38 321.9 22.3 191 103-310 267-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 3.5E-33 1.2E-37 326.7 15.6 188 122-311 30-298 (670)
52 3j16_B RLI1P; ribosome recycli 100.0 1.1E-32 3.7E-37 317.2 19.2 188 109-312 350-560 (608)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-32 7E-37 311.8 14.8 184 106-298 21-234 (538)
54 3bk7_A ABC transporter ATP-bin 100.0 2.8E-32 9.6E-37 314.1 15.2 182 109-299 95-305 (607)
55 2iw3_A Elongation factor 3A; a 100.0 3.7E-31 1.3E-35 315.2 23.2 188 103-311 433-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-31 7.9E-36 311.3 15.6 183 123-311 335-640 (670)
57 2iw3_A Elongation factor 3A; a 100.0 2.3E-31 7.8E-36 317.0 15.5 186 104-305 670-981 (986)
58 3j16_B RLI1P; ribosome recycli 100.0 1.8E-29 6E-34 290.4 12.6 174 124-302 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2E-29 6.9E-34 286.7 12.9 162 134-301 23-216 (538)
60 3pih_A Uvrabc system protein A 100.0 8.7E-28 3E-32 286.0 24.3 186 124-311 598-902 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 3.1E-28 1E-32 288.1 16.3 196 104-311 628-942 (972)
62 2vf7_A UVRA2, excinuclease ABC 99.9 1.8E-27 6.2E-32 281.1 20.7 196 104-311 501-827 (842)
63 2ygr_A Uvrabc system protein A 99.9 2.4E-27 8.1E-32 281.5 17.1 196 104-311 646-960 (993)
64 4aby_A DNA repair protein RECN 99.9 4.6E-27 1.6E-31 259.0 17.7 81 222-305 296-382 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.9E-29 1E-33 280.1 -3.8 168 127-309 129-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.7E-24 1.3E-28 232.7 15.4 84 217-302 275-364 (365)
67 4gp7_A Metallophosphoesterase; 99.9 2.1E-25 7.3E-30 216.7 1.1 141 128-285 1-162 (171)
68 1e69_A Chromosome segregation 99.9 5.9E-24 2E-28 227.2 11.6 89 217-308 215-310 (322)
69 3b85_A Phosphate starvation-in 99.9 7.3E-27 2.5E-31 234.7 -12.1 137 122-282 12-159 (208)
70 1ye8_A Protein THEP1, hypothet 99.9 3.7E-25 1.3E-29 216.9 -0.1 145 138-302 2-159 (178)
71 1tq4_A IIGP1, interferon-induc 99.9 1.2E-24 4E-29 239.3 -9.8 161 122-292 35-247 (413)
72 3b9q_A Chloroplast SRP recepto 99.9 8.6E-23 2.9E-27 216.3 2.4 162 126-300 90-284 (302)
73 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.5E-22 5.3E-27 217.0 0.8 129 125-299 160-291 (330)
74 2v9p_A Replication protein E1; 99.8 5.2E-24 1.8E-28 225.2 -11.5 157 106-315 102-270 (305)
75 2og2_A Putative signal recogni 99.8 1.2E-21 4.3E-26 211.6 3.7 160 127-299 148-340 (359)
76 2dpy_A FLII, flagellum-specifi 99.8 2.3E-23 8E-28 231.2 -12.7 186 105-311 131-344 (438)
77 2o5v_A DNA replication and rep 99.8 2E-19 6.7E-24 194.6 17.3 81 221-309 265-354 (359)
78 3sop_A Neuronal-specific septi 99.8 3.7E-22 1.3E-26 208.2 -5.6 133 138-281 4-150 (270)
79 4ad8_A DNA repair protein RECN 99.8 4.6E-20 1.6E-24 209.4 8.4 76 220-298 395-473 (517)
80 1znw_A Guanylate kinase, GMP k 99.8 5.2E-23 1.8E-27 205.7 -14.4 168 123-296 9-202 (207)
81 3qkt_A DNA double-strand break 99.8 4.8E-19 1.6E-23 190.5 14.9 81 217-299 244-332 (339)
82 1z6g_A Guanylate kinase; struc 99.8 1.9E-22 6.6E-27 203.6 -11.7 156 124-297 11-193 (218)
83 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-19 3.9E-24 206.5 8.7 149 130-299 275-444 (525)
84 1cr0_A DNA primase/helicase; R 99.8 9.4E-20 3.2E-24 191.7 5.5 170 123-300 22-237 (296)
85 3thx_A DNA mismatch repair pro 99.8 4.7E-19 1.6E-23 211.9 11.3 153 122-310 648-812 (934)
86 2o8b_B DNA mismatch repair pro 99.8 4.9E-20 1.7E-24 222.9 2.4 172 105-307 750-938 (1022)
87 2ehv_A Hypothetical protein PH 99.8 3.1E-20 1E-24 189.1 0.4 161 131-296 25-206 (251)
88 4a74_A DNA repair and recombin 99.7 2E-19 6.7E-24 180.8 3.1 154 131-299 20-201 (231)
89 3pih_A Uvrabc system protein A 99.7 7E-19 2.4E-23 209.6 6.5 102 208-311 450-560 (916)
90 2obl_A ESCN; ATPase, hydrolase 99.7 8.7E-21 3E-25 204.6 -9.9 183 106-309 46-253 (347)
91 3aez_A Pantothenate kinase; tr 99.7 3.9E-21 1.3E-25 204.5 -12.5 106 133-254 87-209 (312)
92 2eyu_A Twitching motility prot 99.7 4E-19 1.4E-23 184.4 2.8 132 124-297 15-147 (261)
93 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 7.2E-18 2.5E-22 160.1 10.8 83 216-300 52-142 (148)
94 2jeo_A Uridine-cytidine kinase 99.7 6.5E-20 2.2E-24 188.0 -4.3 160 121-312 10-188 (245)
95 1tf7_A KAIC; homohexamer, hexa 99.7 3.4E-19 1.2E-23 202.7 0.9 165 122-299 24-211 (525)
96 1ewq_A DNA mismatch repair pro 99.7 2.8E-18 9.6E-23 201.8 4.5 148 122-306 565-719 (765)
97 3thx_B DNA mismatch repair pro 99.7 1.6E-17 5.4E-22 198.3 9.9 155 122-302 659-816 (918)
98 2r6f_A Excinuclease ABC subuni 99.7 3.4E-17 1.2E-21 194.2 12.0 114 196-311 451-600 (972)
99 1rj9_A FTSY, signal recognitio 99.7 3.5E-18 1.2E-22 181.1 2.6 140 135-282 101-259 (304)
100 2w0m_A SSO2452; RECA, SSPF, un 99.7 5E-17 1.7E-21 163.0 9.4 166 123-298 9-192 (235)
101 1wb9_A DNA mismatch repair pro 99.7 7.2E-18 2.5E-22 199.4 2.5 161 122-309 594-756 (800)
102 2ygr_A Uvrabc system protein A 99.7 1.9E-16 6.4E-21 188.5 12.2 95 215-311 515-617 (993)
103 1pzn_A RAD51, DNA repair and r 99.7 2.2E-18 7.6E-23 186.1 -4.3 167 124-305 118-309 (349)
104 3szr_A Interferon-induced GTP- 99.6 1.2E-18 4.2E-23 201.1 -7.6 193 105-314 10-240 (608)
105 2vf7_A UVRA2, excinuclease ABC 99.6 2.9E-16 9.9E-21 185.7 12.3 101 209-311 366-475 (842)
106 2qnr_A Septin-2, protein NEDD5 99.6 1.4E-18 4.7E-23 184.0 -7.0 149 110-281 3-167 (301)
107 2i3b_A HCR-ntpase, human cance 99.6 2.2E-19 7.6E-24 177.5 -12.8 150 136-304 1-169 (189)
108 3jvv_A Twitching mobility prot 99.6 8E-17 2.7E-21 174.2 3.8 127 132-298 119-246 (356)
109 3asz_A Uridine kinase; cytidin 99.6 1.2E-18 4.2E-23 173.6 -9.8 129 133-281 3-161 (211)
110 1nlf_A Regulatory protein REPA 99.6 1.5E-15 5E-20 158.5 8.9 136 133-281 27-181 (279)
111 2cvh_A DNA repair and recombin 99.5 9.4E-15 3.2E-19 145.5 10.2 154 124-298 7-185 (220)
112 1pui_A ENGB, probable GTP-bind 99.5 1.7E-15 5.7E-20 149.9 4.0 156 106-273 4-202 (210)
113 3kta_B Chromosome segregation 99.5 1.1E-14 3.8E-19 141.6 9.4 81 216-299 59-145 (173)
114 2qag_C Septin-7; cell cycle, c 99.5 6.6E-17 2.2E-21 178.2 -7.6 159 105-281 11-177 (418)
115 2bdt_A BH3686; alpha-beta prot 99.5 6.5E-18 2.2E-22 165.5 -16.2 161 136-309 2-182 (189)
116 2gza_A Type IV secretion syste 99.5 3.2E-15 1.1E-19 162.1 2.6 136 125-299 164-303 (361)
117 1s96_A Guanylate kinase, GMP k 99.5 1.4E-15 4.7E-20 153.7 -1.1 147 132-314 12-163 (219)
118 2ewv_A Twitching motility prot 99.5 3.9E-15 1.3E-19 162.0 1.2 131 124-296 126-257 (372)
119 1zp6_A Hypothetical protein AT 99.5 1.6E-15 5.5E-20 148.3 -2.1 129 133-276 6-156 (191)
120 1lw7_A Transcriptional regulat 99.5 1.2E-16 4E-21 173.5 -13.3 165 125-296 157-342 (365)
121 1n0w_A DNA repair protein RAD5 99.4 8.5E-13 2.9E-17 133.4 14.3 148 131-299 19-210 (243)
122 2kjq_A DNAA-related protein; s 99.4 3.7E-13 1.3E-17 127.6 6.2 96 124-283 29-127 (149)
123 3ec2_A DNA replication protein 99.4 8.6E-14 2.9E-18 135.1 1.6 113 131-284 33-146 (180)
124 2yhs_A FTSY, cell division pro 99.4 2E-13 6.9E-18 152.1 4.3 173 126-309 283-477 (503)
125 2bbw_A Adenylate kinase 4, AK4 99.4 8E-16 2.7E-20 157.4 -14.3 127 135-271 26-200 (246)
126 2f1r_A Molybdopterin-guanine d 99.3 4.2E-15 1.4E-19 144.4 -8.8 135 137-272 3-164 (171)
127 3e70_C DPA, signal recognition 99.3 1.1E-12 3.8E-17 140.2 8.1 138 134-281 127-279 (328)
128 1htw_A HI0065; nucleotide-bind 99.3 3.8E-14 1.3E-18 135.9 -3.5 78 123-205 20-97 (158)
129 1w1w_A Structural maintenance 99.3 3.9E-12 1.3E-16 140.9 10.2 75 220-296 332-410 (430)
130 1nij_A Hypothetical protein YJ 99.3 8E-15 2.7E-19 156.2 -11.8 131 137-282 5-190 (318)
131 3auy_A DNA double-strand break 99.3 3.8E-12 1.3E-16 138.4 9.0 75 219-296 278-359 (371)
132 2qag_B Septin-6, protein NEDD5 99.3 1.3E-13 4.5E-18 151.5 -3.8 145 126-279 30-217 (427)
133 2rcn_A Probable GTPase ENGC; Y 99.2 2.9E-12 1E-16 138.1 5.4 125 125-269 205-346 (358)
134 3lda_A DNA repair protein RAD5 99.2 2.9E-11 9.8E-16 132.5 12.5 148 131-299 173-364 (400)
135 2qm8_A GTPase/ATPase; G protei 99.2 8.2E-14 2.8E-18 149.6 -8.0 152 106-269 30-260 (337)
136 1udx_A The GTP-binding protein 99.2 3.6E-12 1.2E-16 140.3 4.6 152 126-292 147-319 (416)
137 1sxj_E Activator 1 40 kDa subu 99.2 1.1E-11 3.9E-16 132.6 6.6 125 139-283 39-176 (354)
138 1odf_A YGR205W, hypothetical 3 99.2 6.5E-13 2.2E-17 139.7 -3.8 107 135-256 30-169 (290)
139 3c8u_A Fructokinase; YP_612366 99.2 4.1E-14 1.4E-18 141.1 -13.8 116 133-249 19-140 (208)
140 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.3E-13 7.9E-18 148.5 -11.9 161 132-307 16-209 (392)
141 2oap_1 GSPE-2, type II secreti 99.1 8.5E-14 2.9E-18 157.2 -16.6 151 123-289 247-457 (511)
142 1sq5_A Pantothenate kinase; P- 99.1 1.9E-12 6.4E-17 137.2 -6.3 137 105-254 37-199 (308)
143 1p9r_A General secretion pathw 99.1 9.8E-13 3.3E-17 145.0 -9.8 114 125-245 158-315 (418)
144 2dr3_A UPF0273 protein PH0284; 99.1 1.6E-11 5.4E-16 124.1 -0.3 169 124-297 10-196 (247)
145 2x8a_A Nuclear valosin-contain 99.0 9E-14 3.1E-18 145.0 -18.6 132 123-263 33-189 (274)
146 1vma_A Cell division protein F 99.0 3.1E-10 1.1E-14 120.1 4.7 112 129-268 97-212 (306)
147 1lvg_A Guanylate kinase, GMP k 98.9 5.8E-13 2E-17 132.0 -15.5 57 232-297 116-173 (198)
148 1ls1_A Signal recognition part 98.9 1.4E-09 4.8E-14 114.4 9.1 119 127-268 91-210 (295)
149 3k1j_A LON protease, ATP-depen 98.9 6.5E-11 2.2E-15 136.6 -1.3 142 122-266 46-227 (604)
150 2zr9_A Protein RECA, recombina 98.9 1.2E-09 4.1E-14 117.7 8.6 147 132-305 57-237 (349)
151 2px0_A Flagellar biosynthesis 98.9 1.3E-09 4.5E-14 114.7 7.3 141 134-303 103-247 (296)
152 1in4_A RUVB, holliday junction 98.9 9.6E-12 3.3E-16 133.1 -9.8 129 123-269 31-194 (334)
153 2yv5_A YJEQ protein; hydrolase 98.9 1.9E-10 6.5E-15 121.5 0.2 97 134-235 163-301 (302)
154 2r6a_A DNAB helicase, replicat 98.8 1.9E-09 6.6E-14 120.1 5.0 172 123-300 190-401 (454)
155 3euj_A Chromosome partition pr 98.8 2.5E-09 8.7E-14 119.4 4.1 50 124-177 18-67 (483)
156 1u0l_A Probable GTPase ENGC; p 98.8 1.1E-09 3.7E-14 115.6 0.7 71 132-206 165-259 (301)
157 1oix_A RAS-related protein RAB 98.7 1E-08 3.5E-13 100.0 4.5 128 138-267 31-189 (191)
158 3tr0_A Guanylate kinase, GMP k 98.7 2E-09 6.9E-14 105.8 -1.0 66 130-202 1-71 (205)
159 1t9h_A YLOQ, probable GTPase E 98.6 1.6E-08 5.4E-13 106.9 3.1 69 131-203 168-247 (307)
160 2ce7_A Cell division protein F 98.6 6.3E-08 2.2E-12 108.2 7.8 111 125-281 40-164 (476)
161 1iy2_A ATP-dependent metallopr 98.5 1.5E-11 5E-16 128.0 -21.0 113 123-242 62-190 (278)
162 2ius_A DNA translocase FTSK; n 98.5 2.4E-09 8.1E-14 120.4 -5.5 160 128-294 159-361 (512)
163 1ixz_A ATP-dependent metallopr 98.5 3E-11 1E-15 123.7 -20.6 116 124-248 39-170 (254)
164 1svm_A Large T antigen; AAA+ f 98.5 6.1E-10 2.1E-14 121.0 -11.7 122 123-250 156-312 (377)
165 3lnc_A Guanylate kinase, GMP k 98.4 4.6E-08 1.6E-12 98.5 2.0 40 123-162 14-54 (231)
166 2f9l_A RAB11B, member RAS onco 98.4 2.7E-07 9.3E-12 90.2 7.2 129 138-268 7-166 (199)
167 3hr8_A Protein RECA; alpha and 98.4 4.8E-07 1.7E-11 97.4 9.2 138 132-299 57-231 (356)
168 2e87_A Hypothetical protein PH 98.4 6.3E-07 2.1E-11 96.6 8.8 121 135-278 166-287 (357)
169 1qhl_A Protein (cell division 98.3 1.7E-08 5.8E-13 102.2 -4.5 57 105-177 9-65 (227)
170 1zu4_A FTSY; GTPase, signal re 98.3 7.5E-07 2.6E-11 94.7 6.7 49 126-177 95-143 (320)
171 2xau_A PRE-mRNA-splicing facto 98.3 1.8E-07 6.3E-12 110.7 1.6 80 220-299 189-270 (773)
172 4eun_A Thermoresistant glucoki 98.2 4.9E-08 1.7E-12 96.1 -3.2 39 132-177 25-63 (200)
173 3nwj_A ATSK2; P loop, shikimat 98.2 1.6E-07 5.3E-12 96.5 -0.9 52 105-160 17-72 (250)
174 4a1f_A DNAB helicase, replicat 98.2 1.4E-06 4.9E-11 93.0 6.3 125 124-277 34-162 (338)
175 3bh0_A DNAB-like replicative h 98.2 7E-06 2.4E-10 86.9 11.1 35 124-158 56-90 (315)
176 3a00_A Guanylate kinase, GMP k 98.1 8.2E-07 2.8E-11 86.3 1.8 27 136-162 1-27 (186)
177 3b9p_A CG5977-PA, isoform A; A 98.1 1.7E-05 5.9E-10 82.3 11.7 117 135-295 53-186 (297)
178 3uie_A Adenylyl-sulfate kinase 98.0 2.3E-07 8E-12 91.3 -2.8 50 124-177 13-64 (200)
179 1v5w_A DMC1, meiotic recombina 98.0 2.3E-05 7.8E-10 83.9 11.8 132 131-279 117-272 (343)
180 3t34_A Dynamin-related protein 98.0 6.6E-06 2.3E-10 88.5 7.5 149 124-280 25-212 (360)
181 3kta_A Chromosome segregation 98.0 3E-06 1E-10 81.5 3.8 38 125-163 14-53 (182)
182 2j41_A Guanylate kinase; GMP, 98.0 3.3E-06 1.1E-10 82.6 4.1 32 132-163 2-33 (207)
183 3vaa_A Shikimate kinase, SK; s 98.0 2.9E-06 9.8E-11 83.3 3.6 39 122-160 11-49 (199)
184 1fnn_A CDC6P, cell division co 98.0 2.1E-05 7.1E-10 84.3 10.3 121 135-281 41-169 (389)
185 2z4s_A Chromosomal replication 98.0 1.8E-06 6E-11 95.8 1.8 70 238-307 193-264 (440)
186 1kgd_A CASK, peripheral plasma 97.9 3.5E-06 1.2E-10 81.5 3.4 37 135-173 4-40 (180)
187 2z43_A DNA repair and recombin 97.9 5.1E-05 1.8E-09 80.4 12.0 139 126-280 96-257 (324)
188 1jjv_A Dephospho-COA kinase; P 97.9 1.1E-06 3.6E-11 86.6 -1.4 137 138-313 4-141 (206)
189 2qtf_A Protein HFLX, GTP-bindi 97.9 1.2E-05 4.1E-10 86.9 6.8 130 135-269 177-353 (364)
190 4e22_A Cytidylate kinase; P-lo 97.9 1.2E-06 4.1E-11 89.7 -1.1 54 134-190 25-95 (252)
191 2vp4_A Deoxynucleoside kinase; 97.8 4.6E-06 1.6E-10 83.9 2.0 37 133-176 17-53 (230)
192 3tau_A Guanylate kinase, GMP k 97.8 1E-05 3.4E-10 80.2 4.1 29 134-162 6-34 (208)
193 1ega_A Protein (GTP-binding pr 97.8 4.5E-05 1.5E-09 80.1 8.8 140 135-292 7-169 (301)
194 3kl4_A SRP54, signal recogniti 97.8 3.8E-05 1.3E-09 84.7 8.3 120 135-276 96-219 (433)
195 2dy1_A Elongation factor G; tr 97.8 1.1E-05 3.7E-10 94.0 4.1 128 131-281 4-136 (665)
196 2dhr_A FTSH; AAA+ protein, hex 97.7 3.8E-08 1.3E-12 110.6 -16.5 46 124-176 54-99 (499)
197 3llm_A ATP-dependent RNA helic 97.7 8.9E-06 3E-10 82.0 2.0 142 134-291 74-229 (235)
198 1rz3_A Hypothetical protein rb 97.7 6.1E-06 2.1E-10 81.2 0.5 40 133-175 19-58 (201)
199 3m6a_A ATP-dependent protease 97.7 3E-06 1E-10 96.4 -2.0 48 124-175 97-144 (543)
200 3ney_A 55 kDa erythrocyte memb 97.7 1.5E-05 5.3E-10 78.6 2.7 27 135-161 18-44 (197)
201 1knq_A Gluconate kinase; ALFA/ 97.7 1.3E-05 4.5E-10 76.4 2.1 35 135-176 7-41 (175)
202 1lv7_A FTSH; alpha/beta domain 97.6 0.00017 5.9E-09 73.2 10.4 23 139-161 48-70 (257)
203 2qt1_A Nicotinamide riboside k 97.6 3.5E-05 1.2E-09 75.8 4.6 29 133-161 18-46 (207)
204 1u94_A RECA protein, recombina 97.6 0.00055 1.9E-08 73.6 13.8 144 132-304 59-238 (356)
205 2q6t_A DNAB replication FORK h 97.6 0.00028 9.6E-09 78.0 11.9 170 124-296 188-396 (444)
206 3cf0_A Transitional endoplasmi 97.6 8.1E-05 2.8E-09 77.9 7.1 28 133-160 46-73 (301)
207 3cr8_A Sulfate adenylyltranfer 97.6 1.5E-05 5.1E-10 90.6 1.1 42 132-176 365-408 (552)
208 3tqc_A Pantothenate kinase; bi 97.6 9.1E-06 3.1E-10 86.2 -0.6 39 123-161 73-117 (321)
209 1ypw_A Transitional endoplasmi 97.5 6.5E-05 2.2E-09 89.3 6.3 31 132-162 234-264 (806)
210 1l8q_A Chromosomal replication 97.5 7.3E-05 2.5E-09 78.8 5.9 47 237-283 96-143 (324)
211 2w58_A DNAI, primosome compone 97.5 2E-05 6.8E-10 77.0 1.3 52 237-288 113-166 (202)
212 2qby_A CDC6 homolog 1, cell di 97.5 7E-06 2.4E-10 87.6 -2.1 27 135-161 44-70 (386)
213 1kag_A SKI, shikimate kinase I 97.5 3.3E-05 1.1E-09 73.3 2.8 27 135-161 3-29 (173)
214 2wjg_A FEOB, ferrous iron tran 97.4 2.1E-05 7.1E-10 75.3 0.1 22 138-159 9-30 (188)
215 3lxx_A GTPase IMAP family memb 97.4 0.00092 3.2E-08 67.0 12.0 25 138-162 31-55 (239)
216 3bos_A Putative DNA replicatio 97.3 0.00014 4.6E-09 72.2 4.6 45 238-282 103-149 (242)
217 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00012 4.2E-09 68.7 4.0 30 128-158 16-45 (149)
218 1w1w_A Structural maintenance 97.3 0.0001 3.6E-09 81.1 3.8 33 131-163 21-53 (430)
219 3h4m_A Proteasome-activating n 97.3 0.00059 2E-08 70.1 9.1 26 135-160 50-75 (285)
220 2b8t_A Thymidine kinase; deoxy 97.3 0.00016 5.3E-09 72.8 4.2 53 239-296 89-150 (223)
221 2pez_A Bifunctional 3'-phospho 97.2 7.5E-05 2.6E-09 71.6 1.3 37 135-175 4-42 (179)
222 4eaq_A DTMP kinase, thymidylat 97.2 0.00013 4.6E-09 73.4 2.9 43 126-172 13-58 (229)
223 2p67_A LAO/AO transport system 97.2 3.3E-05 1.1E-09 82.5 -1.6 51 123-176 43-93 (341)
224 1xp8_A RECA protein, recombina 97.2 0.0026 8.8E-08 68.6 13.0 138 132-299 70-244 (366)
225 2wji_A Ferrous iron transport 97.2 0.0012 4.3E-08 61.8 9.3 23 138-160 5-27 (165)
226 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0012 4.2E-08 66.6 9.7 26 135-160 38-63 (262)
227 3d8b_A Fidgetin-like protein 1 97.1 0.0019 6.6E-08 69.1 11.1 26 135-160 116-141 (357)
228 3ice_A Transcription terminati 97.1 6.7E-05 2.3E-09 81.0 -0.6 52 105-160 133-198 (422)
229 3bgw_A DNAB-like replicative h 97.1 0.00094 3.2E-08 73.9 8.3 36 124-159 185-220 (444)
230 2ffh_A Protein (FFH); SRP54, s 97.0 0.0016 5.3E-08 71.6 9.9 46 127-177 91-136 (425)
231 2i1q_A DNA repair and recombin 97.0 0.0019 6.5E-08 68.0 10.1 164 125-298 86-291 (322)
232 4fcw_A Chaperone protein CLPB; 97.0 0.00099 3.4E-08 69.2 7.5 119 136-288 47-177 (311)
233 2www_A Methylmalonic aciduria 97.0 0.00015 5.2E-09 77.7 1.2 39 135-176 73-111 (349)
234 1cke_A CK, MSSA, protein (cyti 97.0 0.00033 1.1E-08 69.4 3.5 37 136-172 5-41 (227)
235 2qor_A Guanylate kinase; phosp 97.0 0.00027 9.1E-09 69.4 2.7 28 134-161 10-37 (204)
236 2gj8_A MNME, tRNA modification 96.9 0.00089 3.1E-08 63.5 6.0 26 135-160 3-28 (172)
237 1m7g_A Adenylylsulfate kinase; 96.9 0.00014 5E-09 71.7 0.1 40 133-175 22-63 (211)
238 2qgz_A Helicase loader, putati 96.9 0.00039 1.3E-08 73.2 3.0 53 237-289 212-266 (308)
239 3n70_A Transport activator; si 96.9 0.0025 8.5E-08 59.0 8.1 44 239-284 76-119 (145)
240 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0094 3.2E-07 62.8 13.4 26 135-160 44-69 (322)
241 1j8m_F SRP54, signal recogniti 96.8 0.0032 1.1E-07 65.9 9.6 44 129-176 92-135 (297)
242 3qks_A DNA double-strand break 96.8 0.00064 2.2E-08 67.0 4.0 30 128-158 16-45 (203)
243 1np6_A Molybdopterin-guanine d 96.8 0.00048 1.6E-08 66.5 2.8 39 137-175 7-45 (174)
244 1y63_A LMAJ004144AAA protein; 96.8 0.00056 1.9E-08 66.0 3.2 32 128-159 2-33 (184)
245 1njg_A DNA polymerase III subu 96.8 0.00023 8E-09 69.8 0.4 24 137-160 46-69 (250)
246 2yvu_A Probable adenylyl-sulfa 96.7 0.00043 1.5E-08 66.6 1.9 29 134-162 11-39 (186)
247 1mky_A Probable GTP-binding pr 96.7 0.0015 5.1E-08 72.1 6.3 39 138-176 182-229 (439)
248 1m2o_B GTP-binding protein SAR 96.7 0.0015 5.1E-08 62.9 5.5 35 124-159 12-46 (190)
249 1sxj_D Activator 1 41 kDa subu 96.7 5.4E-05 1.9E-09 80.1 -5.5 42 239-282 133-174 (353)
250 2if2_A Dephospho-COA kinase; a 96.6 0.00076 2.6E-08 65.7 3.0 21 138-158 3-23 (204)
251 3cmw_A Protein RECA, recombina 96.6 0.0082 2.8E-07 75.9 12.7 139 132-300 728-903 (1706)
252 2r8r_A Sensor protein; KDPD, P 96.6 0.00045 1.5E-08 69.4 1.2 77 232-315 77-175 (228)
253 1xx6_A Thymidine kinase; NESG, 96.6 0.002 6.9E-08 63.0 5.6 53 239-296 81-142 (191)
254 2p5t_B PEZT; postsegregational 96.6 0.00055 1.9E-08 69.7 1.3 40 132-176 28-67 (253)
255 2orw_A Thymidine kinase; TMTK, 96.5 0.00066 2.2E-08 65.9 1.6 53 239-296 76-137 (184)
256 2zts_A Putative uncharacterize 96.5 0.0094 3.2E-07 59.2 10.3 60 237-296 133-206 (251)
257 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00037 1.3E-08 74.6 -0.3 37 124-160 10-48 (359)
258 2v1u_A Cell division control p 96.5 0.0014 4.8E-08 69.7 3.9 26 135-160 43-68 (387)
259 1f6b_A SAR1; gtpases, N-termin 96.5 0.0007 2.4E-08 65.8 1.4 36 123-159 13-48 (198)
260 3t61_A Gluconokinase; PSI-biol 96.5 0.0012 4E-08 64.4 3.0 25 136-160 18-42 (202)
261 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0042 1.4E-07 65.6 7.3 29 131-159 118-146 (331)
262 3cm0_A Adenylate kinase; ATP-b 96.4 0.0014 4.8E-08 62.6 3.3 25 135-159 3-27 (186)
263 1qhx_A CPT, protein (chloramph 96.4 0.0014 4.7E-08 62.3 3.2 26 136-161 3-28 (178)
264 3cmw_A Protein RECA, recombina 96.4 0.016 5.6E-07 73.2 13.5 151 125-304 370-558 (1706)
265 3lxw_A GTPase IMAP family memb 96.4 0.014 4.9E-07 58.9 10.8 57 224-281 87-149 (247)
266 2chg_A Replication factor C sm 96.4 0.004 1.4E-07 60.2 6.1 22 139-160 41-62 (226)
267 1q57_A DNA primase/helicase; d 96.3 0.028 9.7E-07 62.8 13.7 34 125-158 231-264 (503)
268 1ypw_A Transitional endoplasmi 96.3 0.00038 1.3E-08 82.7 -1.7 32 130-161 505-536 (806)
269 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.3E-08 60.7 3.4 23 138-160 3-25 (173)
270 2j9r_A Thymidine kinase; TK1, 96.3 0.0058 2E-07 60.8 7.0 53 239-296 101-162 (214)
271 3syl_A Protein CBBX; photosynt 96.3 0.015 5.1E-07 60.2 10.5 26 135-160 66-91 (309)
272 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0018 6.2E-08 70.4 3.3 29 131-159 17-45 (396)
273 1sxj_C Activator 1 40 kDa subu 96.2 0.00062 2.1E-08 72.2 -0.6 40 123-162 31-72 (340)
274 3io5_A Recombination and repai 96.2 0.0052 1.8E-07 64.8 6.3 121 132-280 25-171 (333)
275 1q3t_A Cytidylate kinase; nucl 96.2 0.0023 8E-08 64.1 3.5 27 134-160 14-40 (236)
276 3co5_A Putative two-component 96.2 0.0056 1.9E-07 56.5 5.7 43 239-282 75-117 (143)
277 3hu3_A Transitional endoplasmi 96.2 0.0042 1.4E-07 69.5 5.7 27 134-160 236-262 (489)
278 3auy_A DNA double-strand break 96.2 0.0028 9.5E-08 68.3 4.1 31 126-157 16-46 (371)
279 1kht_A Adenylate kinase; phosp 96.1 0.0028 9.5E-08 60.5 3.6 25 136-160 3-27 (192)
280 2orv_A Thymidine kinase; TP4A 96.1 0.013 4.4E-07 58.9 8.2 54 237-296 88-150 (234)
281 1gvn_B Zeta; postsegregational 96.1 0.003 1E-07 65.6 3.7 35 135-174 32-66 (287)
282 2qp9_X Vacuolar protein sortin 96.1 0.013 4.5E-07 62.6 8.8 26 135-160 83-108 (355)
283 3r20_A Cytidylate kinase; stru 96.1 0.0029 1E-07 63.9 3.5 25 136-160 9-33 (233)
284 3cmu_A Protein RECA, recombina 96.1 0.022 7.6E-07 72.9 12.1 151 125-304 370-558 (2050)
285 2ze6_A Isopentenyl transferase 96.0 0.003 1E-07 64.3 3.3 23 138-160 3-25 (253)
286 2rhm_A Putative kinase; P-loop 96.0 0.0033 1.1E-07 60.2 3.4 26 135-160 4-29 (193)
287 3vfd_A Spastin; ATPase, microt 96.0 0.029 9.9E-07 60.5 11.2 26 135-160 147-172 (389)
288 2zej_A Dardarin, leucine-rich 96.0 0.0031 1E-07 60.2 3.1 23 138-160 4-26 (184)
289 3trf_A Shikimate kinase, SK; a 96.0 0.0038 1.3E-07 59.6 3.6 26 135-160 4-29 (185)
290 3lw7_A Adenylate kinase relate 95.9 0.0036 1.2E-07 58.4 3.3 19 138-156 3-21 (179)
291 1ex7_A Guanylate kinase; subst 95.9 0.003 1E-07 61.6 2.7 24 138-161 3-26 (186)
292 2zan_A Vacuolar protein sortin 95.9 0.027 9.1E-07 62.2 10.5 27 134-160 165-191 (444)
293 2v54_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 59.9 3.8 26 135-160 3-28 (204)
294 3dm5_A SRP54, signal recogniti 95.9 0.048 1.6E-06 60.0 12.2 28 135-162 99-126 (443)
295 3iij_A Coilin-interacting nucl 95.8 0.004 1.4E-07 59.3 3.1 25 135-159 10-34 (180)
296 2jaq_A Deoxyguanosine kinase; 95.8 0.0042 1.4E-07 59.9 3.3 23 138-160 2-24 (205)
297 1vht_A Dephospho-COA kinase; s 95.8 0.0047 1.6E-07 60.8 3.6 24 135-158 3-26 (218)
298 4b4t_K 26S protease regulatory 95.8 0.039 1.3E-06 60.6 11.2 103 135-282 205-322 (428)
299 2plr_A DTMP kinase, probable t 95.8 0.005 1.7E-07 59.7 3.7 27 135-161 3-29 (213)
300 3eie_A Vacuolar protein sortin 95.8 0.019 6.6E-07 60.2 8.4 26 135-160 50-75 (322)
301 4b4t_M 26S protease regulatory 95.7 0.029 9.9E-07 61.7 9.9 122 135-307 214-353 (434)
302 4b4t_J 26S protease regulatory 95.7 0.038 1.3E-06 60.1 10.7 99 139-282 185-298 (405)
303 2c95_A Adenylate kinase 1; tra 95.7 0.0052 1.8E-07 59.0 3.5 26 135-160 8-33 (196)
304 2wwf_A Thymidilate kinase, put 95.7 0.0053 1.8E-07 59.8 3.5 26 135-160 9-34 (212)
305 1ly1_A Polynucleotide kinase; 95.7 0.0053 1.8E-07 57.9 3.5 22 137-158 3-24 (181)
306 4b4t_I 26S protease regulatory 95.7 0.041 1.4E-06 60.2 10.7 122 135-307 215-354 (437)
307 1xjc_A MOBB protein homolog; s 95.7 0.0038 1.3E-07 59.9 2.3 26 137-162 5-30 (169)
308 1via_A Shikimate kinase; struc 95.7 0.0052 1.8E-07 58.3 3.2 23 138-160 6-28 (175)
309 1uf9_A TT1252 protein; P-loop, 95.7 0.0055 1.9E-07 59.1 3.4 24 136-159 8-31 (203)
310 2qag_A Septin-2, protein NEDD5 95.6 0.0038 1.3E-07 67.1 2.2 46 105-161 17-62 (361)
311 3zvl_A Bifunctional polynucleo 95.6 0.05 1.7E-06 59.4 11.0 26 134-159 256-281 (416)
312 1gtv_A TMK, thymidylate kinase 95.6 0.0028 9.5E-08 61.9 0.9 24 138-161 2-25 (214)
313 1nn5_A Similar to deoxythymidy 95.6 0.0062 2.1E-07 59.3 3.4 27 134-160 7-33 (215)
314 1tev_A UMP-CMP kinase; ploop, 95.5 0.0071 2.4E-07 57.7 3.6 24 136-159 3-26 (196)
315 3pfi_A Holliday junction ATP-d 95.5 0.015 5.1E-07 61.1 6.3 23 138-160 57-79 (338)
316 1nks_A Adenylate kinase; therm 95.5 0.0064 2.2E-07 58.0 3.2 24 138-161 3-26 (194)
317 4b4t_L 26S protease subunit RP 95.5 0.084 2.9E-06 58.1 12.4 123 135-307 214-353 (437)
318 3cmu_A Protein RECA, recombina 95.4 0.024 8.1E-07 72.7 8.8 35 123-157 1066-1102(2050)
319 2bwj_A Adenylate kinase 5; pho 95.4 0.0066 2.3E-07 58.4 2.8 27 134-160 10-36 (199)
320 1aky_A Adenylate kinase; ATP:A 95.3 0.0094 3.2E-07 58.8 3.7 26 135-160 3-28 (220)
321 4dcu_A GTP-binding protein ENG 95.3 0.021 7.1E-07 63.2 6.7 52 225-280 88-140 (456)
322 3ake_A Cytidylate kinase; CMP 95.2 0.009 3.1E-07 57.8 3.2 23 138-160 4-26 (208)
323 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 57.0 3.4 23 138-160 2-24 (197)
324 2vli_A Antibiotic resistance p 95.2 0.0075 2.6E-07 57.2 2.3 26 135-160 4-29 (183)
325 3k53_A Ferrous iron transport 95.1 0.0087 3E-07 61.3 2.9 23 138-160 5-27 (271)
326 4b4t_H 26S protease regulatory 95.1 0.062 2.1E-06 59.3 9.7 103 135-282 242-359 (467)
327 1ojl_A Transcriptional regulat 95.1 0.035 1.2E-06 58.0 7.4 27 135-161 24-50 (304)
328 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.7E-07 58.7 3.3 26 135-160 6-31 (227)
329 2cdn_A Adenylate kinase; phosp 95.1 0.013 4.4E-07 56.8 3.8 26 135-160 19-44 (201)
330 1ko7_A HPR kinase/phosphatase; 95.0 0.017 5.7E-07 60.8 4.8 35 124-159 133-167 (314)
331 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.4E-07 55.1 3.5 25 136-160 7-31 (168)
332 3fb4_A Adenylate kinase; psych 95.0 0.012 4.2E-07 57.6 3.4 23 138-160 2-24 (216)
333 3ihw_A Centg3; RAS, centaurin, 95.0 0.025 8.6E-07 53.9 5.6 21 139-159 23-43 (184)
334 1z2a_A RAS-related protein RAB 95.0 0.012 4E-07 54.3 3.0 23 138-160 7-29 (168)
335 2ged_A SR-beta, signal recogni 95.0 0.011 3.9E-07 56.2 3.1 23 138-160 50-72 (193)
336 1ukz_A Uridylate kinase; trans 94.9 0.014 4.8E-07 56.5 3.7 25 136-160 15-39 (203)
337 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.4E-07 55.9 3.4 23 138-160 2-24 (195)
338 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.9E-07 55.4 2.9 23 138-160 4-26 (173)
339 2nzj_A GTP-binding protein REM 94.9 0.013 4.6E-07 54.4 3.3 23 138-160 6-28 (175)
340 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.8E-07 56.3 2.8 24 137-160 3-26 (184)
341 2erx_A GTP-binding protein DI- 94.9 0.014 4.7E-07 54.0 3.3 22 138-159 5-26 (172)
342 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.9E-07 58.2 2.8 26 135-160 4-29 (222)
343 3q72_A GTP-binding protein RAD 94.8 0.011 3.8E-07 54.5 2.5 22 139-160 5-26 (166)
344 2pt5_A Shikimate kinase, SK; a 94.8 0.015 5.2E-07 54.3 3.5 23 138-160 2-24 (168)
345 1kao_A RAP2A; GTP-binding prot 94.8 0.013 4.6E-07 53.6 3.1 23 138-160 5-27 (167)
346 2dyk_A GTP-binding protein; GT 94.8 0.014 4.7E-07 53.5 3.1 23 138-160 3-25 (161)
347 3dl0_A Adenylate kinase; phosp 94.8 0.014 4.9E-07 57.1 3.4 23 138-160 2-24 (216)
348 1u8z_A RAS-related protein RAL 94.8 0.013 4.6E-07 53.7 3.0 23 138-160 6-28 (168)
349 4ag6_A VIRB4 ATPase, type IV s 94.8 0.0093 3.2E-07 64.5 2.2 36 135-173 34-69 (392)
350 2ce2_X GTPase HRAS; signaling 94.8 0.012 4.3E-07 53.7 2.7 23 138-160 5-27 (166)
351 1qf9_A UMP/CMP kinase, protein 94.8 0.015 5E-07 55.4 3.3 24 136-159 6-29 (194)
352 3q85_A GTP-binding protein REM 94.7 0.015 5.3E-07 53.7 3.2 22 139-160 5-26 (169)
353 3b1v_A Ferrous iron uptake tra 94.7 0.022 7.5E-07 58.6 4.6 23 138-160 5-27 (272)
354 1z0j_A RAB-22, RAS-related pro 94.7 0.015 5.1E-07 53.7 3.1 23 138-160 8-30 (170)
355 1z08_A RAS-related protein RAB 94.7 0.015 5.2E-07 53.7 3.0 23 138-160 8-30 (170)
356 3tw8_B RAS-related protein RAB 94.7 0.014 4.9E-07 54.4 2.9 23 138-160 11-33 (181)
357 1ek0_A Protein (GTP-binding pr 94.7 0.015 5.2E-07 53.5 3.0 22 139-160 6-27 (170)
358 3tlx_A Adenylate kinase 2; str 94.7 0.018 6.1E-07 58.1 3.7 25 135-159 28-52 (243)
359 1jal_A YCHF protein; nucleotid 94.7 0.025 8.4E-07 60.8 5.0 25 136-160 2-26 (363)
360 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.018 6.1E-07 58.7 3.7 26 135-160 3-28 (260)
361 1c1y_A RAS-related protein RAP 94.6 0.016 5.4E-07 53.4 3.0 22 139-160 6-27 (167)
362 1ky3_A GTP-binding protein YPT 94.6 0.016 5.4E-07 54.2 3.1 23 138-160 10-32 (182)
363 3a8t_A Adenylate isopentenyltr 94.6 0.024 8.2E-07 60.2 4.7 26 135-160 39-64 (339)
364 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.016 5.4E-07 54.1 3.1 23 138-160 9-31 (177)
365 1g16_A RAS-related protein SEC 94.6 0.015 5E-07 53.8 2.7 22 139-160 6-27 (170)
366 1uj2_A Uridine-cytidine kinase 94.6 0.017 5.9E-07 58.3 3.4 24 137-160 23-46 (252)
367 2lkc_A Translation initiation 94.6 0.021 7.3E-07 53.2 3.8 26 135-160 7-32 (178)
368 2qmh_A HPR kinase/phosphorylas 94.5 0.026 9.1E-07 55.5 4.4 26 135-160 33-58 (205)
369 1fzq_A ADP-ribosylation factor 94.5 0.015 5E-07 55.3 2.5 22 138-159 18-39 (181)
370 2fn4_A P23, RAS-related protei 94.5 0.016 5.4E-07 54.1 2.8 22 138-159 11-32 (181)
371 1svi_A GTP-binding protein YSX 94.5 0.016 5.3E-07 55.3 2.7 23 138-160 25-47 (195)
372 2grj_A Dephospho-COA kinase; T 94.5 0.019 6.5E-07 56.0 3.4 24 136-159 12-35 (192)
373 3pqc_A Probable GTP-binding pr 94.5 0.016 5.5E-07 54.9 2.7 23 138-160 25-47 (195)
374 1r2q_A RAS-related protein RAB 94.4 0.019 6.4E-07 52.9 3.0 22 138-159 8-29 (170)
375 3clv_A RAB5 protein, putative; 94.4 0.019 6.3E-07 54.5 3.1 23 138-160 9-31 (208)
376 4dsu_A GTPase KRAS, isoform 2B 94.4 0.019 6.6E-07 54.0 3.1 23 138-160 6-28 (189)
377 1jr3_A DNA polymerase III subu 94.4 0.034 1.2E-06 58.8 5.3 25 137-161 39-63 (373)
378 2hxs_A RAB-26, RAS-related pro 94.4 0.021 7.3E-07 53.2 3.3 23 138-160 8-30 (178)
379 2cxx_A Probable GTP-binding pr 94.3 0.018 6.2E-07 54.4 2.7 22 139-160 4-25 (190)
380 1upt_A ARL1, ADP-ribosylation 94.3 0.02 6.9E-07 52.9 3.0 22 138-159 9-30 (171)
381 3bc1_A RAS-related protein RAB 94.3 0.02 6.8E-07 54.0 3.0 23 138-160 13-35 (195)
382 3p32_A Probable GTPase RV1496/ 94.3 0.13 4.3E-06 54.9 9.6 26 135-160 78-103 (355)
383 2oil_A CATX-8, RAS-related pro 94.3 0.02 6.9E-07 54.5 3.0 22 139-160 28-49 (193)
384 3t1o_A Gliding protein MGLA; G 94.3 0.023 7.8E-07 53.8 3.4 24 139-162 17-40 (198)
385 1r8s_A ADP-ribosylation factor 94.3 0.021 7.2E-07 52.5 3.0 21 139-159 3-23 (164)
386 3be4_A Adenylate kinase; malar 94.3 0.023 7.7E-07 56.0 3.4 26 135-160 4-29 (217)
387 1a7j_A Phosphoribulokinase; tr 94.3 0.013 4.4E-07 61.0 1.7 26 135-160 4-29 (290)
388 1jbk_A CLPB protein; beta barr 94.2 0.029 9.8E-07 52.6 3.8 26 135-160 42-67 (195)
389 2y8e_A RAB-protein 6, GH09086P 94.2 0.02 6.9E-07 53.2 2.7 22 138-159 16-37 (179)
390 2g6b_A RAS-related protein RAB 94.2 0.022 7.7E-07 53.2 3.0 23 138-160 12-34 (180)
391 2a9k_A RAS-related protein RAL 94.2 0.022 7.6E-07 53.4 3.0 23 138-160 20-42 (187)
392 2xb4_A Adenylate kinase; ATP-b 94.2 0.025 8.5E-07 56.1 3.5 23 138-160 2-24 (223)
393 1z0f_A RAB14, member RAS oncog 94.2 0.023 7.9E-07 52.9 3.0 23 138-160 17-39 (179)
394 2f6r_A COA synthase, bifunctio 94.1 0.022 7.7E-07 58.7 3.2 23 136-158 75-97 (281)
395 3con_A GTPase NRAS; structural 94.1 0.024 8.1E-07 53.8 3.0 23 138-160 23-45 (190)
396 2efe_B Small GTP-binding prote 94.1 0.024 8.3E-07 53.0 3.0 23 138-160 14-36 (181)
397 1moz_A ARL1, ADP-ribosylation 94.1 0.015 5.2E-07 54.6 1.6 23 136-158 18-40 (183)
398 1qvr_A CLPB protein; coiled co 94.0 0.05 1.7E-06 65.0 6.3 25 137-161 589-613 (854)
399 3t5d_A Septin-7; GTP-binding p 94.0 0.021 7.2E-07 58.5 2.6 22 139-160 11-32 (274)
400 1wf3_A GTP-binding protein; GT 94.0 0.027 9.4E-07 58.8 3.5 23 138-160 9-31 (301)
401 1nrj_B SR-beta, signal recogni 94.0 0.025 8.7E-07 55.0 3.0 23 138-160 14-36 (218)
402 2bov_A RAla, RAS-related prote 94.0 0.026 8.8E-07 54.1 3.0 23 138-160 16-38 (206)
403 3umf_A Adenylate kinase; rossm 93.9 0.032 1.1E-06 55.5 3.7 26 135-160 28-53 (217)
404 2bme_A RAB4A, RAS-related prot 93.9 0.024 8.3E-07 53.3 2.7 23 138-160 12-34 (186)
405 1vg8_A RAS-related protein RAB 93.9 0.027 9.2E-07 54.1 3.1 23 138-160 10-32 (207)
406 1ak2_A Adenylate kinase isoenz 93.9 0.033 1.1E-06 55.5 3.8 26 135-160 15-40 (233)
407 1e4v_A Adenylate kinase; trans 93.9 0.027 9.4E-07 55.2 3.1 23 138-160 2-24 (214)
408 2gf9_A RAS-related protein RAB 93.9 0.027 9.2E-07 53.5 3.0 22 139-160 25-46 (189)
409 3iby_A Ferrous iron transport 93.9 0.028 9.4E-07 57.3 3.2 23 138-160 3-25 (256)
410 1ltq_A Polynucleotide kinase; 93.9 0.03 1E-06 57.8 3.5 23 137-159 3-25 (301)
411 3tkl_A RAS-related protein RAB 93.9 0.028 9.5E-07 53.4 3.0 22 139-160 19-40 (196)
412 1ksh_A ARF-like protein 2; sma 93.9 0.028 9.5E-07 53.1 3.0 25 136-160 18-42 (186)
413 2gf0_A GTP-binding protein DI- 93.8 0.026 9E-07 53.7 2.8 22 138-159 10-31 (199)
414 3cbq_A GTP-binding protein REM 93.8 0.023 7.7E-07 54.8 2.3 22 138-159 25-46 (195)
415 3iev_A GTP-binding protein ERA 93.8 0.031 1.1E-06 58.5 3.5 23 138-160 12-34 (308)
416 3kkq_A RAS-related protein M-R 93.8 0.029 1E-06 52.7 3.0 22 139-160 21-42 (183)
417 4edh_A DTMP kinase, thymidylat 93.8 0.035 1.2E-06 55.0 3.7 28 135-162 5-32 (213)
418 3v9p_A DTMP kinase, thymidylat 93.8 0.027 9.3E-07 56.5 2.9 28 134-161 23-50 (227)
419 3d3q_A TRNA delta(2)-isopenten 93.8 0.027 9.1E-07 60.0 2.9 24 137-160 8-31 (340)
420 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.03 1E-06 52.5 3.0 22 138-159 7-28 (186)
421 2fg5_A RAB-22B, RAS-related pr 93.8 0.027 9.4E-07 53.7 2.8 22 139-160 26-47 (192)
422 2xtp_A GTPase IMAP family memb 93.8 0.028 9.7E-07 56.7 3.0 23 138-160 24-46 (260)
423 1m7b_A RND3/RHOE small GTP-bin 93.8 0.027 9.3E-07 53.3 2.7 23 138-160 9-31 (184)
424 1zbd_A Rabphilin-3A; G protein 93.7 0.032 1.1E-06 53.5 3.2 23 138-160 10-32 (203)
425 2dby_A GTP-binding protein; GD 93.7 0.028 9.6E-07 60.5 3.0 22 139-160 4-25 (368)
426 1z06_A RAS-related protein RAB 93.7 0.032 1.1E-06 53.0 3.1 21 139-159 23-43 (189)
427 2il1_A RAB12; G-protein, GDP, 93.6 0.03 1E-06 53.5 2.8 22 139-160 29-50 (192)
428 2wsm_A Hydrogenase expression/ 93.6 0.031 1.1E-06 54.5 3.0 24 137-160 31-54 (221)
429 1sxj_B Activator 1 37 kDa subu 93.6 0.037 1.3E-06 57.1 3.7 22 139-160 45-66 (323)
430 3exa_A TRNA delta(2)-isopenten 93.6 0.041 1.4E-06 57.9 3.9 25 136-160 3-27 (322)
431 3oes_A GTPase rhebl1; small GT 93.6 0.03 1E-06 53.9 2.7 23 138-160 26-48 (201)
432 3a1s_A Iron(II) transport prot 93.6 0.035 1.2E-06 56.5 3.3 23 138-160 7-29 (258)
433 2h92_A Cytidylate kinase; ross 93.6 0.027 9.4E-07 55.1 2.4 25 136-160 3-27 (219)
434 2cjw_A GTP-binding protein GEM 93.6 0.034 1.2E-06 53.5 3.0 22 138-159 8-29 (192)
435 3bwd_D RAC-like GTP-binding pr 93.6 0.034 1.2E-06 52.0 3.0 23 138-160 10-32 (182)
436 2a5j_A RAS-related protein RAB 93.5 0.034 1.2E-06 52.9 3.0 22 139-160 24-45 (191)
437 3u61_B DNA polymerase accessor 93.5 0.11 3.8E-06 54.0 7.2 24 137-160 49-72 (324)
438 2p65_A Hypothetical protein PF 93.5 0.034 1.2E-06 52.1 3.0 27 135-161 42-68 (187)
439 3t5g_A GTP-binding protein RHE 93.5 0.032 1.1E-06 52.3 2.7 22 138-159 8-29 (181)
440 4dhe_A Probable GTP-binding pr 93.5 0.018 6.2E-07 56.2 1.0 23 138-160 31-53 (223)
441 3i8s_A Ferrous iron transport 93.5 0.033 1.1E-06 57.2 3.0 23 138-160 5-27 (274)
442 3dz8_A RAS-related protein RAB 93.5 0.032 1.1E-06 53.1 2.7 22 139-160 26-47 (191)
443 2o52_A RAS-related protein RAB 93.5 0.034 1.2E-06 53.6 2.9 22 139-160 28-49 (200)
444 1zj6_A ADP-ribosylation factor 93.5 0.035 1.2E-06 52.6 2.9 23 137-159 17-39 (187)
445 3lv8_A DTMP kinase, thymidylat 93.5 0.039 1.3E-06 55.7 3.4 28 135-162 26-53 (236)
446 1x3s_A RAS-related protein RAB 93.5 0.036 1.2E-06 52.5 3.0 23 138-160 17-39 (195)
447 1zd9_A ADP-ribosylation factor 93.5 0.036 1.2E-06 52.7 3.0 23 138-160 24-46 (188)
448 3crm_A TRNA delta(2)-isopenten 93.5 0.033 1.1E-06 58.8 3.0 24 137-160 6-29 (323)
449 4bas_A ADP-ribosylation factor 93.5 0.035 1.2E-06 52.9 2.9 23 138-160 19-41 (199)
450 2qu8_A Putative nucleolar GTP- 93.4 0.035 1.2E-06 54.7 3.0 22 138-159 31-52 (228)
451 2atv_A RERG, RAS-like estrogen 93.4 0.037 1.3E-06 53.0 3.1 23 138-160 30-52 (196)
452 2h57_A ADP-ribosylation factor 93.4 0.027 9.3E-07 53.5 2.1 23 138-160 23-45 (190)
453 2bcg_Y Protein YP2, GTP-bindin 93.4 0.033 1.1E-06 53.7 2.7 23 138-160 10-32 (206)
454 3tqf_A HPR(Ser) kinase; transf 93.4 0.055 1.9E-06 52.0 4.1 25 135-159 15-39 (181)
455 3cph_A RAS-related protein SEC 93.4 0.036 1.2E-06 53.4 3.0 23 138-160 22-44 (213)
456 3reg_A RHO-like small GTPase; 93.4 0.037 1.3E-06 52.7 3.0 23 138-160 25-47 (194)
457 2p5s_A RAS and EF-hand domain 93.4 0.037 1.3E-06 53.1 3.0 23 138-160 30-52 (199)
458 1jwy_B Dynamin A GTPase domain 93.4 0.037 1.3E-06 57.4 3.2 23 138-160 26-48 (315)
459 2f7s_A C25KG, RAS-related prot 93.4 0.041 1.4E-06 53.4 3.3 22 139-160 28-49 (217)
460 2h17_A ADP-ribosylation factor 93.3 0.033 1.1E-06 52.6 2.5 22 138-159 23-44 (181)
461 2ew1_A RAS-related protein RAB 93.3 0.035 1.2E-06 53.9 2.7 22 139-160 29-50 (201)
462 3sr0_A Adenylate kinase; phosp 93.3 0.044 1.5E-06 54.0 3.4 23 138-160 2-24 (206)
463 3llu_A RAS-related GTP-binding 93.3 0.043 1.5E-06 52.6 3.2 24 138-161 22-45 (196)
464 2fv8_A H6, RHO-related GTP-bin 93.2 0.038 1.3E-06 53.5 2.8 23 138-160 27-49 (207)
465 2iwr_A Centaurin gamma 1; ANK 93.2 0.033 1.1E-06 52.1 2.2 22 138-159 9-30 (178)
466 3tmk_A Thymidylate kinase; pho 93.2 0.047 1.6E-06 54.3 3.4 28 135-162 4-31 (216)
467 2q3h_A RAS homolog gene family 93.2 0.046 1.6E-06 52.4 3.2 23 138-160 22-44 (201)
468 2ocp_A DGK, deoxyguanosine kin 93.2 0.047 1.6E-06 54.6 3.4 26 136-161 2-27 (241)
469 4tmk_A Protein (thymidylate ki 93.2 0.048 1.6E-06 54.0 3.4 28 135-162 2-29 (213)
470 3pxi_A Negative regulator of g 93.1 0.14 4.9E-06 60.1 8.1 23 138-160 523-545 (758)
471 3c5c_A RAS-like protein 12; GD 93.1 0.044 1.5E-06 52.2 3.1 23 138-160 23-45 (187)
472 1p5z_B DCK, deoxycytidine kina 93.1 0.033 1.1E-06 56.5 2.2 26 135-160 23-48 (263)
473 3ld9_A DTMP kinase, thymidylat 93.1 0.054 1.8E-06 54.2 3.7 27 135-161 20-46 (223)
474 1sky_E F1-ATPase, F1-ATP synth 93.1 0.05 1.7E-06 60.2 3.7 35 125-160 141-175 (473)
475 2j1l_A RHO-related GTP-binding 93.1 0.044 1.5E-06 53.5 3.0 22 138-159 36-57 (214)
476 2fh5_B SR-beta, signal recogni 93.1 0.044 1.5E-06 53.1 3.0 23 138-160 9-31 (214)
477 2aka_B Dynamin-1; fusion prote 93.0 0.04 1.4E-06 56.6 2.7 23 138-160 28-50 (299)
478 1gwn_A RHO-related GTP-binding 93.0 0.041 1.4E-06 53.5 2.7 23 138-160 30-52 (205)
479 2fu5_C RAS-related protein RAB 92.9 0.031 1.1E-06 52.5 1.6 23 138-160 10-32 (183)
480 2gco_A H9, RHO-related GTP-bin 92.9 0.045 1.5E-06 52.7 2.7 22 139-160 28-49 (201)
481 2b6h_A ADP-ribosylation factor 92.9 0.043 1.5E-06 52.5 2.5 24 136-159 29-52 (192)
482 3def_A T7I23.11 protein; chlor 92.8 0.049 1.7E-06 55.3 3.0 23 138-160 38-60 (262)
483 2atx_A Small GTP binding prote 92.7 0.051 1.7E-06 51.7 2.8 22 138-159 20-41 (194)
484 1h65_A Chloroplast outer envel 92.7 0.052 1.8E-06 55.4 2.9 23 138-160 41-63 (270)
485 2g3y_A GTP-binding protein GEM 92.5 0.063 2.1E-06 52.9 3.3 22 138-159 39-60 (211)
486 3foz_A TRNA delta(2)-isopenten 92.5 0.069 2.4E-06 56.0 3.7 25 136-160 10-34 (316)
487 2hf9_A Probable hydrogenase ni 92.5 0.059 2E-06 52.8 3.0 24 137-160 39-62 (226)
488 4djt_A GTP-binding nuclear pro 92.4 0.03 1E-06 54.5 0.7 23 138-160 13-35 (218)
489 2r62_A Cell division protease 92.4 0.021 7E-07 57.9 -0.5 22 139-160 47-68 (268)
490 3cpj_B GTP-binding protein YPT 92.3 0.064 2.2E-06 52.6 3.1 23 138-160 15-37 (223)
491 2hup_A RAS-related protein RAB 92.3 0.061 2.1E-06 51.9 2.8 22 139-160 32-53 (201)
492 3cnl_A YLQF, putative uncharac 92.2 0.078 2.7E-06 54.2 3.6 25 137-161 100-124 (262)
493 2yc2_C IFT27, small RAB-relate 92.2 0.031 1.1E-06 53.5 0.5 22 138-159 22-43 (208)
494 2x77_A ADP-ribosylation factor 92.2 0.044 1.5E-06 51.9 1.6 23 137-159 23-45 (189)
495 3eph_A TRNA isopentenyltransfe 92.1 0.074 2.5E-06 57.8 3.4 24 137-160 3-26 (409)
496 4gzl_A RAS-related C3 botulinu 92.0 0.067 2.3E-06 51.7 2.7 22 138-159 32-53 (204)
497 3q3j_B RHO-related GTP-binding 91.9 0.077 2.6E-06 51.8 3.0 22 138-159 29-50 (214)
498 2j0v_A RAC-like GTP-binding pr 91.8 0.073 2.5E-06 51.4 2.7 23 138-160 11-33 (212)
499 3gmt_A Adenylate kinase; ssgci 91.7 0.087 3E-06 52.9 3.2 24 137-160 9-32 (230)
500 1r6b_X CLPA protein; AAA+, N-t 91.7 0.27 9.3E-06 57.6 8.0 124 134-296 486-651 (758)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-45 Score=397.79 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|..+. ....+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 24 mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~---G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 24 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESE 99 (366)
T ss_dssp CEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECSSCCHHH
T ss_pred eEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 599999999996421 23579999999999999999999999999999999999999875 9999999986431
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.+|||+|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||+
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 3569999999999999999999988632 24555567788999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|+||||||||||||+.++..|+++|+++++ .|+|||+++|+. .++.++||||++|++|++++.|++++++.
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999985 499999987765 68889999999999999999999998764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-45 Score=396.13 Aligned_cols=198 Identities=30% Similarity=0.463 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---C
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---Y 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++.... .
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC---eEEEECCEECCCCCHHH
Confidence 489999999994 3579999999999999999999999999999999999999875 9999999986432 3
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|++.+++.+||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|+|
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 579999999999999999999988632 3455556778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||||+||+..+.++.+.|++++++ |+|+|+++|+ ..++..+||||++|++|+++..|+++++.+
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999999999999754 9999997776 468999999999999999999999998864
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.1e-45 Score=373.79 Aligned_cols=198 Identities=30% Similarity=0.367 Sum_probs=170.2
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++||++.|..+. ..+.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 68999999996321 12469999999999999999999999999999999999999875 9999999986432
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHHc----------------------CCCccc-cccCCCCCHHHHHHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL----------------------QLPGFF-CQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l----------------------~l~~~~-~~~~~~LSGGqrqRv~IA 233 (697)
++.+|||+|++.+++.+||+||+.++... ++.+.. ++++.+|||||||||+||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 13599999999999999999999875321 233322 567789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|||+.+|++|||||||+|||+.++.++++.|++++++ |+|||+++|+.. +.++||+|++|++|+++..+++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999999865 999999888763 4589999999999999999988764
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.3e-45 Score=395.09 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (697)
.++++||+++|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++. ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 489999999993 3579999999999999999999999999999999999999875 9999999875 11
Q ss_pred --CCccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh
Q 005423 180 --PYGSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
.++.+|||+|+..+++.+||+||+.|+. .+++.+..++++.+|||||||||+|||||+.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1357999999999999999999998742 2345556678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|++|||||||||||+..+.++++.|+++. +.|+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999888875 5699999977764 68899999999999999999999998764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.4e-45 Score=380.13 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|.+ ...+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 7 ~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~---G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eEEEECCEECCcccccH
Confidence 5899999999842 2359999999999999999999999999999999999999875 9999999986321
Q ss_pred ---CccEEEEcCccc-cCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ---YGSYGFVERETT-LIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ---~~~~~yv~Q~~~-l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.+|||+|++. .+..+||+||+.++.. +++.+..++++.+|||||||||+|||||+
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 246999999862 3347899999988642 23444456777999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|||||||+|||+.++..++++|++++ ++|+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998 6699999988876 47888999999999999999999998764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-44 Score=377.18 Aligned_cols=198 Identities=25% Similarity=0.283 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccccccc
Confidence 489999999983 3469999999999999999999999999999999999999875 999999987641
Q ss_pred -------------CCccEEEEcCccccCCCCCHHHHHHHHH-H-------------------cCCCcc-ccccCCCCCHH
Q 005423 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA-L-------------------LQLPGF-FCQRKNGLPCG 225 (697)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~-------------------l~l~~~-~~~~~~~LSGG 225 (697)
.++.++||+|++.+++.+||+||+.+.. . +++.+. .++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 1246999999999999999999998742 1 234444 56778899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 226 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 226 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999977764 57888999999999999999999
Q ss_pred chhhHH
Q 005423 306 TLACLQ 311 (697)
Q Consensus 306 ~~~~~~ 311 (697)
++++.+
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-44 Score=375.94 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECCEECCCccccH
Confidence 489999999983 3469999999999999999999999999999999999999875 99999998763 1 1
Q ss_pred ---CccEEEEcCccccCCCCCHHHHHHHHH-H-------------------cCCCccccccCCCCCHHHHHHHHHHHHHh
Q 005423 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-L-------------------LQLPGFFCQRKNGLPCGERRRVRIARELV 237 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~ 237 (697)
++.++||+|++.+++.+||+||+.+.. . +++.+..++.+.+|||||||||+|||||+
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 245999999999999999999998853 1 12333345667899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 238 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987799999977764 57888999999999999999999988754
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.4e-44 Score=365.02 Aligned_cols=192 Identities=27% Similarity=0.337 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---GKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE---EEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 489999999984 2469999999999999999999999999999999999999875 9999999886431
Q ss_pred -----CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 181 -----YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.+.++||+|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1469999999999999999999987532 2344445667789999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+ ++||++++|++|++++.|+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999987799999988875 455 89999999999999999863
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-44 Score=371.63 Aligned_cols=199 Identities=28% Similarity=0.324 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++....
T Consensus 15 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCccHHHH
Confidence 589999999983 3479999999999999999999999999999999999999875 9999999876432
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.++|++|++.+++.+||+||+.+... +++.+..++++.+|||||||||+|||||+.+|+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2469999999999999999999987532 233344556778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|+++++.+.
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999987899999988875 578889999999999999999999887653
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-44 Score=369.65 Aligned_cols=197 Identities=23% Similarity=0.325 Sum_probs=173.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 6 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCCHHH
Confidence 589999999984 2469999999999999999999999999999999999999875 9999999986431
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH------------------c-CCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL------------------L-QLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~------------------l-~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
++.++|++|++.+++.+||+||+.+... + ++.+..++++.+|||||||||+|||||+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2349999999999999999999987421 1 122334566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999987899999988875 5788899999999999999999988764
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-44 Score=385.44 Aligned_cols=198 Identities=25% Similarity=0.417 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .+
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc---cEEEECCEECCCCChhh
Confidence 389999999983 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+. .+++.+..++++++|||||||||+|||||+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 57999999999999999999998742 13344556678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999754 99999988765 57889999999999999999999998864
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.2e-44 Score=371.07 Aligned_cols=195 Identities=22% Similarity=0.295 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999886432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHHc--------------------------------CCCccccccCCCCCHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSALL--------------------------------QLPGFFCQRKNGLPCGE 226 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l--------------------------------~l~~~~~~~~~~LSGGq 226 (697)
++.++||+|++.+++.+||+||+.+.... ++.+..++.+.+|||||
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 23599999999999999999999875321 11122344568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 227 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 227 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|++
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999987899999988876 467889999999999999999998
Q ss_pred hh
Q 005423 307 LA 308 (697)
Q Consensus 307 ~~ 308 (697)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1e-43 Score=386.50 Aligned_cols=198 Identities=25% Similarity=0.387 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc---cEEEECCEECccccccc
Confidence 489999999983 3469999999999999999999999999999999999999875 999999986421
Q ss_pred ----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHH
Q 005423 180 ----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIAREL 236 (697)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL 236 (697)
.++.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHH
Confidence 23579999999999999999999988642 2344455677899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+.+|++|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999754 99999988775 68889999999999999999999998864
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-44 Score=385.40 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHhH
Confidence 389999999883 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 154 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV 154 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 579999999999999999999988532 2345556678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 155 LLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999754 99999987765 68889999999999999999999998864
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.8e-44 Score=383.98 Aligned_cols=200 Identities=25% Similarity=0.406 Sum_probs=176.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (697)
..++++||++.|+ +.+++|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECCcCChh
Confidence 4699999999883 13469999999999999999999999999999999999999875 999999988632 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
++.+|||+|+..+++.+||+||+.|+.. +++.+..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999988532 234445567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999754 99999977764 68889999999999999999999998764
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.8e-43 Score=368.70 Aligned_cols=197 Identities=24% Similarity=0.304 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|. .+.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 11 ~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 11 LLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPKA 82 (266)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHHH
T ss_pred eEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHHH
Confidence 689999999984 3579999999999999999999999999999999999999875 9999999986432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-----------------HcCCCccccccCCCCCHHHHHHHHHHHHHhh----
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-----------------LLQLPGFFCQRKNGLPCGERRRVRIARELVM---- 238 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~---- 238 (697)
.+.++|++|++.+++.+||+||+.++. .+++.+..++.+.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 245999999998888899999997742 2334445567778999999999999999999
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 239 --RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 239 --~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|++|||||||+|||+.++.+++++|++++++ |+|||+++|+ ..++.++|||+++|++|++++.|+++++.
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999865 5799987776 46788899999999999999999998875
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.4e-44 Score=385.27 Aligned_cols=198 Identities=26% Similarity=0.377 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEecccccCcc--eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 005423 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (697)
.++++||++.|. .+. +|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECccccc
Confidence 389999999984 245 9999999999999999999999999999999999999875 999999986421
Q ss_pred -----CCccEEEEcCccccCCCCCHHHHHHHHHH-------------------cCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 180 -----PYGSYGFVERETTLIGSLTVREYLYYSAL-------------------LQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------------l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 23579999999999999999999987421 234455567789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 499999988775 57889999999999999999999998764
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-43 Score=384.82 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECCEECCCCChhh
Confidence 389999999983 3469999999999999999999999999999999999999875 999999988632 23
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHHH-------------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYSA-------------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+.+|||+|+..+++++||+||+.|+. .+++.+..++++++|||||||||+|||||+.+|++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 57999999999999999999998742 23455556778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 243 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 243 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||||||||||+.++.++.+.|++++++ |+|+|+++|+. .++..+||+|++|++|+++..|+++++.+
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999764 99999988765 57889999999999999999999998864
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.6e-43 Score=381.59 Aligned_cols=196 Identities=25% Similarity=0.356 Sum_probs=174.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (697)
++++||++.|. .+ +|+|||+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++.... ++
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC---cEEEECCEECCCCchhhC
Confidence 68899999883 34 9999999999999999999999999999999999999875 9999999986432 35
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.+|||+|+..+++++||+||+.|+.. +++.+..++++++|||||||||+|||||+.+|++||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999999988632 23445566788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||++++|++|+++..|+++++.+
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999975 489999988765 57889999999999999999999998753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-43 Score=362.25 Aligned_cols=194 Identities=26% Similarity=0.361 Sum_probs=170.4
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (697)
++++|+++.|. .+|+|||+++++ |+++|+||||||||||+|+|+|+++|++ |+|.++|++... .++
T Consensus 2 l~~~~l~~~y~-------~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-------NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-------TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-------CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCchhhC
Confidence 57899999983 159999999999 9999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHH-----------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSA-----------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~-----------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++||+|++.+++.+||+||+.+.. .+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999997631 12344445677889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.++..+++.|+++++ +|+|||+++|+. .++.++||++++|++|++++.|+++++.+
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999975 499999988875 57888999999999999999999988754
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-42 Score=362.57 Aligned_cols=204 Identities=23% Similarity=0.341 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (697)
.++++||++.|..++...+++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEECchHHhhh
Confidence 378999999984110001469999999999999999999999999999999999999875 999999987532 235
Q ss_pred cEEEEcCcc-ccCCCCCHHHHHHHHH------------------HcCCC--ccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 183 SYGFVERET-TLIGSLTVREYLYYSA------------------LLQLP--GFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~e~l~~~~------------------~l~l~--~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
.++||+|++ ..++.+||+||+.+.. .+++. +..++.+.+|||||||||+|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 799999995 4566789999998742 12344 44566778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
||||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+||++++|++|++++.|+++++.+.
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999877999999888764 67788999999999999999999887653
No 22
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.1e-43 Score=369.60 Aligned_cols=196 Identities=22% Similarity=0.374 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|++ .+.+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|.++...
T Consensus 53 ~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS---GCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE---EEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999852 3569999999999999999999999999999999999999875 9999999986532
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH-------------cC-------CCc----cccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL-------------LQ-------LPG----FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-------------l~-------l~~----~~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|+ .||+||+.++.. .+ +|. ...+...+|||||||||+||||
T Consensus 126 ~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp HHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 356999999999985 599999987421 11 221 2234557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|+. ..+.. ||+|++|++|++++.|+++++++
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999874 68999877765 45655 99999999999999999998765
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.4e-43 Score=365.57 Aligned_cols=197 Identities=24% Similarity=0.303 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~-- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++.. ..
T Consensus 21 ~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTBCCC---CCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---eEEEECCEEcccccCCH
Confidence 599999999984 3469999999999999999999999999999999999999875 99999998754 21
Q ss_pred ---CccEEEEcCccccC--CCCCHHHHHHHHH-----------------------HcCCCccccccCCCCCHHHHHHHHH
Q 005423 181 ---YGSYGFVERETTLI--GSLTVREYLYYSA-----------------------LLQLPGFFCQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 ---~~~~~yv~Q~~~l~--~~lTV~e~l~~~~-----------------------~l~l~~~~~~~~~~LSGGqrqRv~I 232 (697)
++.++||+|++.++ +.+||+||+.++. .+++.+..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 24699999997643 3569999997631 1223333456678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999998779999 9988875 4677899999999999999999988764
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2e-42 Score=357.77 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=162.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999984 34799999999999999999999999999999999998 5665 49999999986432
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCC-ccccccCCC-CCHHHHHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLP-GFFCQRKNG-LPCGERRRVRI 232 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~-~~~~~~~~~-LSGGqrqRv~I 232 (697)
+..++|++|++.+++.+||+||+.+... +++. +..++.+.+ |||||||||+|
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1348999999999999999999976431 1232 334556677 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+ ||++++|++|++++.|+++
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999777999999888864 66677 5999999999999999987
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.5e-42 Score=356.34 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHH
Confidence 36899999999831 13479999999999999999999999999999999999999875 9999999986431
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------HcCCCc-----------cccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LLQLPG-----------FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~l~~-----------~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.+.. .+++.+ ...+...+|||||||||+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 246999999998886 59999997631 011211 122345799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999995 6899999888764 44 459999999999999999988765
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.1e-42 Score=361.67 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++.|.+. ..+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+. |+|.++|++....
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEcccCCHHH
Confidence 49999999988421 12579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH--------------c-----------CCCccccccCCCCCHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL--------------L-----------QLPGFFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l-----------~l~~~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.+... . ++....++++.+|||||||||+|||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 246999999998887 599999977311 0 1112234567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||+++|++ ..+. .||++++|++|++++.|+++++.+
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999974 589999988875 4554 599999999999999999988754
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-41 Score=352.58 Aligned_cols=189 Identities=25% Similarity=0.342 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.+ ++.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ---GKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSE---EEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE--------eccE
Confidence 4899999999841 3479999999999999999999999999999999999999875 99982 2569
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH-----------------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL-----------------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~-----------------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+++.+||+||+.+... +++.+..++.+.+|||||||||+|||||+.+|+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999989999999987531 122233445668999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||++++|++|+ ++.|+++++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999876 99999988875 57778999999999999 9999988764
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-41 Score=354.53 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (697)
.++++||++.|. .+++|+|||+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 489999999983 347999999999999999999999999999999999994 444 49999999875321
Q ss_pred ----CccEEEEcCccccCCCCCHHHHHHHHHH--------------------------cCCC-ccccccCC-CCCHHHHH
Q 005423 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL--------------------------LQLP-GFFCQRKN-GLPCGERR 228 (697)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------------l~l~-~~~~~~~~-~LSGGqrq 228 (697)
+..++|++|++.+++.+||.|++.+... +++. ...++.+. +|||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 1248999999999999999999865320 1222 12334455 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhc-cCEEEEEeCCeEEEEeCch
Q 005423 229 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGETL 307 (697)
Q Consensus 229 Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~-~D~v~vL~~G~iv~~G~~~ 307 (697)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+ ||++++|++|++++.|+++
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999987799999988875 456665 8999999999999999998
Q ss_pred hhHHhhhhcCC
Q 005423 308 ACLQHFSNAGF 318 (697)
Q Consensus 308 ~~~~~f~~~g~ 318 (697)
++.. ++..|+
T Consensus 251 ~~~~-~~~~~~ 260 (267)
T 2zu0_C 251 LVKQ-LEEQGY 260 (267)
T ss_dssp HHHH-HHTTTC
T ss_pred HHhh-hhhcch
Confidence 7653 333333
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-41 Score=351.17 Aligned_cols=192 Identities=24% Similarity=0.315 Sum_probs=168.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||++. .+|+|+|+++++||+++|+||||||||||+|+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4789999864 589999999999999999999999999999999999987 3 9999999875321
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC----
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH---- 241 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~---- 241 (697)
++.++|++|++.+++.+||+||+.+.. .+++.+..++.+.+|||||||||+|||||+.+|+
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 246999999999998999999997631 1244445567778999999999999999999999
Q ss_pred ---EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 242 ---VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 242 ---iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
+|||||||+|||+.++..+++.|++++++|+|||+++|+. ..+.++||++++|++|++++.|+++++.
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999987799999977765 5777899999999999999999988764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-42 Score=354.11 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=165.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (697)
++++||++.|+ ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999873 13469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHH--------------HcCCCccc-----------cccCCCCCHHHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSA--------------LLQLPGFF-----------CQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~--------------~l~l~~~~-----------~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++ .||+||+.+.. .+++.+.. .+...+|||||||||+||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 356999999999887 59999997641 11222222 23457999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999997 6999999888753 55 4699999999999999999887653
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.5e-41 Score=349.55 Aligned_cols=197 Identities=25% Similarity=0.367 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (697)
.++++||++.|.++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|++++ . |+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~---G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E---GDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-E---EEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-C---eEEEECCEEhhhcCHHH
Confidence 59999999988421 124699999999999999999999999999999999999875 3 999999987532
Q ss_pred CCccEEEEcCccccCCCCCHHHHHHHHH-------------HcC-------CCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 180 PYGSYGFVERETTLIGSLTVREYLYYSA-------------LLQ-------LPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l~-------l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
.++.++||+|++.+++ .||+||+.++. .++ ++.. ..+++.+|||||||||+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 1356999999999886 59999997631 011 1111 124567999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||||||||+|||+.++..+++.|+++++ |+|||+++|++. .+ +.||++++|++|++++.|+++++..
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999975 899999888864 44 4699999999999999999888754
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-40 Score=346.65 Aligned_cols=194 Identities=23% Similarity=0.347 Sum_probs=167.7
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCcc
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (697)
++++|+++.|.+.. ..+.+|+|+|++++ ||+++|+||||||||||+|+|+|++ |++ |+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~---G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS---GNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE---EEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC---cEEEECCEECcchHHhhh
Confidence 68999999985310 11469999999999 9999999999999999999999999 864 99999998742 12457
Q ss_pred EE-EEcCccccCCCCCHHHHHHHHH---------------HcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 184 YG-FVERETTLIGSLTVREYLYYSA---------------LLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~e~l~~~~---------------~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
++ |++|++.+ .+||+||+.+.. .+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99 99999887 789999998743 23455 5566778999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC-EEEEEeCCeEEEEeCchhhHH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+|||+.++..+++.|+++++ |||+++|++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999864 899988876 46778999 999999999999999988764
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.4e-41 Score=342.59 Aligned_cols=189 Identities=22% Similarity=0.335 Sum_probs=159.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++|+++.|.. ..+++|+|||+++++||+++|+||||||||||+|+|+|+++|.. |+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc---cEEEECC--------EE
Confidence 5899999998842 23579999999999999999999999999999999999999875 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|++|++.+++. ||+||+.+.. ..++.+. ..+...+|||||||||+|||||+.+|+
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998875 9999997631 1111111 112347999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+++. ++++. +|+|||+++|++ ..+ ..||++++|++|++++.|+++++.+
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999997 45665 488999988875 455 4599999999999999999887653
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-41 Score=340.39 Aligned_cols=186 Identities=20% Similarity=0.313 Sum_probs=159.7
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
+..++++||++.|. . ++|+|||+++++||+++|+||||||||||||+|+|+++|+. |+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEhhhhcC
Confidence 45799999999873 3 69999999999999999999999999999999999999875 999999987542345
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH-----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL-----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~-----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
.++||+|++.+++.+||+||+.+... +++... ++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 79999999999999999999987532 123333 566789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeE
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~i 300 (697)
||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||+++++ +|+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999877899999998874 677888988755 3443
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.6e-41 Score=342.81 Aligned_cols=189 Identities=20% Similarity=0.313 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++.|.. ..+++|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEE---EEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC--------EE
Confidence 3899999998842 13579999999999999999999999999999999999998864 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHHH------------cCC-------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSAL------------LQL-------PG----FFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+||+|++.+ +.+||+||+.+... +++ +. ..++++.+|||||||||+|||||+.+|+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999865 57899999976421 111 10 1245678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||||||+|||+.++..+++.|+ +++ +|+|||+++|+.. .+ ..||++++|++|++++.|+++++.+
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999999999999995 443 5899999888875 44 5799999999999999999887654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=366.12 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||+++|.. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999852 23579999999999999999999999999999999999986 4 49999999876432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHH------------HHcCCCccccccCCC-----------CCHHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYS------------ALLQLPGFFCQRKNG-----------LPCGERRRVRIARE 235 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~------------~~l~l~~~~~~~~~~-----------LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+++ +||+||+.+. ..+++.+..++.+.+ |||||||||+||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 257999999999997 6999999631 223444445556655 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+.+|+||||||||||||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++++.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999875 578999977775 3456799999999999999999999865
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-39 Score=373.01 Aligned_cols=198 Identities=27% Similarity=0.415 Sum_probs=170.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER---GRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE---EEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEECCEEcccCCHH
Confidence 36999999999853 23579999999999999999999999999999999999999875 9999999876432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCc----cccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++. .. ++|+ ...++..+||||||||++|||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHH
Confidence 3579999999999965 9999997631 01 1222 224566899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++.++.+.|+++. +|+|+|+++|++. .+ ..||+|++|++|++++.|+++++.+
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 5899999888864 44 5899999999999999999998865
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-39 Score=371.03 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHH
Confidence 36999999999853 23579999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++. .. ++|.. ..++..+||||||||++|||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr 490 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 3469999999999976 9999997641 01 12221 23445789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 491 IFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999986 4789999888865 44 5699999999999999999998764
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.8e-39 Score=369.70 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (697)
..++++|++++|++. .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 359999999999531 2569999999999999999999999999999999999999876 999999987532
Q ss_pred -CCccEEEEcCccccCCCCCHHHHHHHHHH--------------cCCCc-----------cccccCCCCCHHHHHHHHHH
Q 005423 180 -PYGSYGFVERETTLIGSLTVREYLYYSAL--------------LQLPG-----------FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l~~-----------~~~~~~~~LSGGqrqRv~IA 233 (697)
.++.++||+|++.+++. ||+||+.++.. +++.+ ...++..+||||||||++||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 23579999999999974 99999987530 11111 11234478999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999874 899999888874 44 4799999999999999999988754
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.7e-39 Score=370.49 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|+++.|+++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC---CeEEECCEEccccCHHH
Confidence 59999999998521 2579999999999999999999999999999999999999875 9999999986432
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHHH--------------cCC-------Cc----cccccCCCCCHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSAL--------------LQL-------PG----FFCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------l~l-------~~----~~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++. ||+||+.++.. +++ |+ ...++..+||||||||++|||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 3469999999999875 99999987530 011 11 112345789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999975 899999888864 44 5799999999999999999988764
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.5e-39 Score=369.72 Aligned_cols=197 Identities=23% Similarity=0.366 Sum_probs=165.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (697)
++++|+++.|+++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 342 i~~~~v~~~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 342 LEFKNVHFAYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS---GTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEEEECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE---EEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCEEhhhCCHHHH
Confidence 9999999998531 12469999999999999999999999999999999999999875 9999999986432
Q ss_pred CccEEEEcCccccCCCCCHHHHHHHHHHc-----------------------CCCccc----cccCCCCCHHHHHHHHHH
Q 005423 181 YGSYGFVERETTLIGSLTVREYLYYSALL-----------------------QLPGFF----CQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l-----------------------~l~~~~----~~~~~~LSGGqrqRv~IA 233 (697)
++.++||+|++.+++ .||+||+.++... ++|+.. .++..+|||||||||+||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 246999999999986 5999999874211 112111 223478999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 496 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999976 789999888764 45 4699999999999999999988653
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-39 Score=373.00 Aligned_cols=197 Identities=23% Similarity=0.365 Sum_probs=168.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|+++.|++ .+++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.+||++....
T Consensus 353 ~~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR---GQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---eEEEECCEEhhhCCHH
Confidence 35999999998852 3469999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------c----------CCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------L----------QLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------l----------~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.++||+|++.+++ .||+||+.++.. + ++|+. ..+...+||||||||++|||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 357999999999986 599999987421 1 11111 11223689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999986 5899999888875 45 4599999999999999999998764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.7e-38 Score=334.74 Aligned_cols=184 Identities=22% Similarity=0.349 Sum_probs=145.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.++++||++. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEE---EEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC--------EE
Confidence 5899999874 1369999999999999999999999999999999999998864 9999998 38
Q ss_pred EEEcCccccCCCCCHHHHHHHHH------------HcCCCcc-----------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 185 GFVERETTLIGSLTVREYLYYSA------------LLQLPGF-----------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~------------~l~l~~~-----------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|++|++.+++. ||+||+. +. ..++.+. ..+...+|||||||||+|||||+.+|+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEeCCCccCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 999999988875 9999996 21 0111111 112347999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
+|||||||+|||+.++..+++.+ ++++ +|+|||+++|+. ..+ ..||++++|++|++++.|+++++.+
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999974 5554 589999988875 455 4699999999999999999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-37 Score=386.16 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=170.8
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++||+++|+.+ ...++|+|||++|+|||.+||+||||||||||+++|.|+++|.+ |+|.+||.++...
T Consensus 1076 ~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHHH
T ss_pred eEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHHH
Confidence 59999999999642 24579999999999999999999999999999999999999876 9999999987542
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH---------------H-------cCCCccc----cccCCCCCHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA---------------L-------LQLPGFF----CQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~---------------~-------l~l~~~~----~~~~~~LSGGqrqRv~IA 233 (697)
++++++|+|++.+|.. |++|||.|+. . ..+|+.+ .+....||||||||++||
T Consensus 1151 lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp HHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred HHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 4679999999999965 9999986541 1 1233322 334568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 234 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 234 ~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|..+. ...||+|+||++|+|+++|+++++++
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998875 57899998887753 45799999999999999999999875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-36 Score=378.74 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (697)
.++++|++|.|++. ..+++|+|+|+++++||++||+||||||||||+++|.|+++|.+ |+|.+||.++...
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~---G~I~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK---GKITIDGVDVRDINLEF 489 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc---CcccCCCccchhccHHH
Confidence 59999999999642 34679999999999999999999999999999999999999875 9999999987543
Q ss_pred -CccEEEEcCccccCCCCCHHHHHHHHH-------------Hc-------CCCcc----ccccCCCCCHHHHHHHHHHHH
Q 005423 181 -YGSYGFVERETTLIGSLTVREYLYYSA-------------LL-------QLPGF----FCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~e~l~~~~-------------~l-------~l~~~----~~~~~~~LSGGqrqRv~IA~a 235 (697)
++.++||+|++.+|. .|++||+.|+. .. .+|+. ..++...||||||||++||||
T Consensus 490 lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHHEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred HhhcccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 357999999999995 59999998752 11 23332 234557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+++|+|||||||||+||+.++..|.+.|+++. +|+|+|+++|+.+ ..+.||+|++|++|+|++.|+.+|+.+
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999999999987 5889999899875 457899999999999999999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5e-36 Score=372.00 Aligned_cols=199 Identities=23% Similarity=0.333 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++|++++|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~---G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD---GMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE---EEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEHHhCCHH
Confidence 359999999999632 23479999999999999999999999999999999999999875 9999999986432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH--------------------cCCCcc----ccccCCCCCHHHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL--------------------LQLPGF----FCQRKNGLPCGERRRVRIAR 234 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~--------------------l~l~~~----~~~~~~~LSGGqrqRv~IA~ 234 (697)
++.+|||+|++.+++. ||+||+.++.. .++|.. ..++..+|||||||||+|||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHH
Confidence 3469999999999975 99999988521 112322 23455789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 235 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 235 aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+. +.+ ..||+|++|++|++++.|+.+++.+
T Consensus 540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998875 589999977775 455 4599999999999999999998764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-35 Score=368.71 Aligned_cols=199 Identities=25% Similarity=0.358 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (697)
..++++||++.|++. ...++|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.+||.++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~---G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA---GSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE---EEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEcccCCHH
Confidence 359999999999632 23469999999999999999999999999999999999999875 9999999886432
Q ss_pred --CccEEEEcCccccCCCCCHHHHHHHHHH----------------------cCCCccc----cccCCCCCHHHHHHHHH
Q 005423 181 --YGSYGFVERETTLIGSLTVREYLYYSAL----------------------LQLPGFF----CQRKNGLPCGERRRVRI 232 (697)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------------l~l~~~~----~~~~~~LSGGqrqRv~I 232 (697)
++.++||+|++.+++ .||+||+.++.. .++|+.. .+....|||||||||+|
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence 457999999998885 699999965310 1233222 23456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 233 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 233 A~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
||||+.+|+||||||||+|||+.++..|.+.|+++. +|+|+|+++|+.. .+ ..||||++|++|++++.|+++++++
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999998864 5899999888775 45 5599999999999999999998765
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-34 Score=331.91 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=165.2
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++++.+++||++||+||||||||||||+|+|+++|+. |+|.+ ..
T Consensus 355 ~~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~--------~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEW--------DL 417 (607)
T ss_dssp CEEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCC--------CC
T ss_pred ceEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEE--------ee
Confidence 34689999998773 246899999999999999999999999999999999999875 98876 24
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-H--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-A--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|+..+.+.+||.|++... . .+++.+..++.+.+|||||||||+|||+|+.+|+||||||
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE 497 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE 497 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 699999998777789999988643 1 1244555667789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 311 (697)
||+|||+.++..++++|++++ +.|.|||+++|+ ..++..+|||+++|++ |+++..|+++++.+
T Consensus 498 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 498 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999997 468999997776 4688899999999986 88999999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-34 Score=325.86 Aligned_cols=191 Identities=21% Similarity=0.201 Sum_probs=163.8
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++|+++++||++||+||||||||||+|+|+|+++|.. |+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCC--------CC
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE--------Cc
Confidence 34689999998873 146899999999999999999999999999999999999875 98875 13
Q ss_pred cEEEEcCccccCCCCCHHHHHHHH-H--------------HcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 183 SYGFVERETTLIGSLTVREYLYYS-A--------------LLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~-~--------------~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.++|++|+....+.+||.|++... . .+++.+..++.+..|||||||||+|||+|+.+|+||||||
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 599999998777788999988643 1 0123334456778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 311 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 311 (697)
||+|||+.++..++++|++++ +.|.|||+++|+ ..++..+||||++|++ |+++..|+++++.+
T Consensus 428 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 428 PSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999997 468999997775 5688899999999986 88999999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-33 Score=321.93 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=160.3
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
...++++|+++.+. ...|+++|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQ------- 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSCC-------
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCe-------
Confidence 34689999998873 246888899999999999999999999999999999999875 99987653
Q ss_pred cEEEEcCccccCCCCCHHHHHHHHHH----------------cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 005423 183 SYGFVERETTLIGSLTVREYLYYSAL----------------LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFID 246 (697)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~e~l~~~~~----------------l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 246 (697)
.++|++|+.......||.||+.+... +++.+..++.+.+|||||||||+|||||+.+|+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 58999998776667899999976311 12223345677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhH
Q 005423 247 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACL 310 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~ 310 (697)
|||+|||+.++.+++++|+++++ .|+|||+++|+ ..++..+||||++|++ |.....+++.++.
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999985 58999997665 5688899999999986 6666677765543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.5e-33 Score=326.67 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=133.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAK 176 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl---------------------~~L~G~~~~~~~----~~G~I~i~G~~ 176 (697)
.+.+|+|||+++++||++||+||||||||||+ +++.|+.+|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34699999999999999999999999999998 888888777521 13677777764
Q ss_pred CC-CCCccEEEEcCcccc-------------------CCCCCHHHHHHHHHH---------------------------c
Q 005423 177 SE-MPYGSYGFVERETTL-------------------IGSLTVREYLYYSAL---------------------------L 209 (697)
Q Consensus 177 ~~-~~~~~~~yv~Q~~~l-------------------~~~lTV~e~l~~~~~---------------------------l 209 (697)
.. .++..+++|+|...+ ++.+||+||+.+... +
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 32 223445666554332 356789999876321 1
Q ss_pred CCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 210 QLPGF-FCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 210 ~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
++... .++.+.+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+++|+. ..+
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~- 267 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM- 267 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH-HHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHH-
Confidence 22221 356678999999999999999999998 9999999999999999999999999998899999988775 344
Q ss_pred hccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 287 GLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 287 ~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
..||++++| ++|++++.|+++++.+
T Consensus 268 ~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 268 LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 569999999 8999999999988753
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=317.16 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=155.8
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~G-----e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
+++++.|+. ...+++++|+++++| |+++|+||||||||||+|+|+|+++|++ |+. .....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~--------~~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD--------IPKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC--------CCSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC--------ccCCc
Confidence 345555532 235788999999888 7899999999999999999999999875 752 12346
Q ss_pred EEEEcCccccCCCCCHHHHHHHH---------------HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 184 YGFVERETTLIGSLTVREYLYYS---------------ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~e~l~~~---------------~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++|++|+.......||+|++... ..+++.+..++.+.+|||||||||+|||||+.+|+|||||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP 494 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 89999987666667999987532 123445556778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChHHHHhccCEEEEEeC--CeEEEEeCchhhHHh
Q 005423 249 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 312 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 312 (697)
|+|||+.++..++++|++++ +.|.|||+++|+ ..++..+||||++|++ |+++..|+++++++-
T Consensus 495 T~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 495 SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999996 569999997766 5688899999999986 999999999988753
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.1e-32 Score=311.76 Aligned_cols=184 Identities=23% Similarity=0.192 Sum_probs=147.4
Q ss_pred EEE-EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 005423 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (697)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~ 175 (697)
..+ +||++.|.+ ...+|+|+| .+++||++||+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 344 588888832 124899999 999999999999999999999999999998875 775 35664
Q ss_pred eCC-------CCCccEEEEcCccccCCC---CCHHHHHHHH----------HHcCCCccccccCCCCCHHHHHHHHHHHH
Q 005423 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYS----------ALLQLPGFFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGGqrqRv~IA~a 235 (697)
+.. .....+++++|+....+. .|+.|++... ..+++....++.+.+|||||||||+||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 321 112357888887544332 3888887432 23456666677889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCC
Q 005423 236 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 298 (697)
Q Consensus 236 L~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G 298 (697)
|+.+|+||||||||++||+.++..+++.|++++++|+|||+++|+ ..++..+||+|++|++|
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd-~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD-LAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEE
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999998889999997776 56888999999999865
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.8e-32 Score=314.06 Aligned_cols=182 Identities=24% Similarity=0.236 Sum_probs=147.6
Q ss_pred EeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 005423 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (697)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (697)
+||++.|.+ ...+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.+...
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 777887731 124899999 999999999999999999999999999998875 775 355643211
Q ss_pred -------CCccEEEEcCccccCC---CCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhC
Q 005423 180 -------PYGSYGFVERETTLIG---SLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMR 239 (697)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~ 239 (697)
....+++++|.....+ ..||.|++.. ...+++....++.+.+|||||||||+|||||+.+
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~ 246 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRK 246 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 1234788888643322 2389998743 2245666667788899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCe
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~ 299 (697)
|+||||||||+|||+.++..+++.|++++++|+|||+++|+ ...+..+||+|++|+++.
T Consensus 247 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd-l~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 247 AHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEESCT
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC-hHHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999998889999997776 467888999999998653
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.7e-31 Score=315.20 Aligned_cols=188 Identities=20% Similarity=0.279 Sum_probs=154.6
Q ss_pred CceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 005423 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (697)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (697)
+..+...|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 44678789999883 3579999999999999999999999999999999995 222 3433211 12
Q ss_pred cEEEEcCcc-ccCCCCCHHHHHHH------------HHHcCCC-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 183 SYGFVERET-TLIGSLTVREYLYY------------SALLQLP-GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~e~l~~------------~~~l~l~-~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
.++|++|+. .+++.+||.|++.+ ...++++ ...+++..+|||||||||+|||+|+.+|+|||||||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred eEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 478999874 67788999999864 1123443 345677889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE-EEeCchhhHH
Q 005423 249 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 311 (697)
Q Consensus 249 TsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 311 (697)
|+|||+.++..+.+.|++ .|+|||+++|+ ..++.++||++++|++|+++ +.|+.+++..
T Consensus 576 Ts~LD~~~~~~l~~~L~~---~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNT---CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTTCCHHHHHHHHHHHHH---SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHh---CCCEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999998 58999997776 56888999999999999997 6899887654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.3e-31 Score=311.26 Aligned_cols=183 Identities=23% Similarity=0.245 Sum_probs=138.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMP 180 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~ 180 (697)
..+|+|||++|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35799999999999999999999999999998754 22222 26777777653210
Q ss_pred C----------------------------------------------ccEEEEcCccccC--------------------
Q 005423 181 Y----------------------------------------------GSYGFVERETTLI-------------------- 194 (697)
Q Consensus 181 ~----------------------------------------------~~~~yv~Q~~~l~-------------------- 194 (697)
. ...|++.|+..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 0 0112333322222
Q ss_pred ------------CCCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 005423 195 ------------GSLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFI 245 (697)
Q Consensus 195 ------------~~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 245 (697)
..+||.||+.+.. .+++.. ..++.+.+|||||||||+|||||+.+| +||||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 2478999987632 123322 245677899999999999999999987 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.++.+++++|++++++|+|||+++|+.. .+ ..||+|++| ++|++++.|+++++.+
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999988999999888753 44 679999999 8999999999998753
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.3e-31 Score=317.00 Aligned_cols=186 Identities=22% Similarity=0.315 Sum_probs=143.0
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCcc
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (697)
..++++|+++.|++ ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s---G~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS---GEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE---EEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEcCc------cc
Confidence 46999999998842 12579999999999999999999999999999999999999875 99999863 13
Q ss_pred EEEEcCcccc----CCCCCHHHHHHH------------------------------------------------------
Q 005423 184 YGFVERETTL----IGSLTVREYLYY------------------------------------------------------ 205 (697)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~e~l~~------------------------------------------------------ 205 (697)
++|++|+... ....|+.|++.+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 5555554310 001222222211
Q ss_pred ------------------------------------------------------------------HHHcCCCcc--ccc
Q 005423 206 ------------------------------------------------------------------SALLQLPGF--FCQ 217 (697)
Q Consensus 206 ------------------------------------------------------------------~~~l~l~~~--~~~ 217 (697)
...+++... .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 112233322 245
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 218 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
++++|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ |.|||+++|+ ...+.++||++++|++
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD-~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS-AEFTKNLTEEVWAVKD 973 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC-HHHHTTTCCEEECCBT
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC-HHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999888765 5689887776 4678889999999999
Q ss_pred CeEEEEeC
Q 005423 298 GNTLFFGE 305 (697)
Q Consensus 298 G~iv~~G~ 305 (697)
|+++..|+
T Consensus 974 G~Iv~~G~ 981 (986)
T 2iw3_A 974 GRMTPSGH 981 (986)
T ss_dssp TBCCC---
T ss_pred CEEEEeCC
Confidence 99987774
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-29 Score=290.42 Aligned_cols=174 Identities=20% Similarity=0.195 Sum_probs=132.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCccEE
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (697)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677766 589999999999999999999999999999876 8772 33321100 000112
Q ss_pred EEcCcccc------CCCCCHHHHHHH------------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 186 FVERETTL------IGSLTVREYLYY------------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 186 yv~Q~~~l------~~~lTV~e~l~~------------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
+.+|.... -+..++.+++.. ...+++....++.+.+|||||||||+|||||+.+|+||||||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 22332111 112245554422 234567777788899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEE
Q 005423 248 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~ 302 (697)
||++||+.++..+.+.|++++++|+|||+++|+ ..++..+||+|++|++|..++
T Consensus 248 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd-l~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD-LSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC-HHHHHHHCSEEEEEESCTTTE
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999889999997665 568899999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=2e-29 Score=286.70 Aligned_cols=162 Identities=20% Similarity=0.226 Sum_probs=128.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCccEEEEcCc----c
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (697)
++||++||+||||||||||+|+|+|+++|+. |+| .++|++.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4899999999999999999999999999876 887 56665431 011123333333 3
Q ss_pred ccCCCCCHHHHHHH----------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 192 TLIGSLTVREYLYY----------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 192 ~l~~~lTV~e~l~~----------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
.++ ..+|.|++.. ...+++....++...+|||||||||+|||||+.+|+||||||||++||+.++..+.
T Consensus 100 ~~~-~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 100 KFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp TTC-CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hhc-cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 333 3478876642 12345656667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEE
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 301 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv 301 (697)
+.|+++++ |+|||+++|+ ..++..+||+|++|++|..+
T Consensus 179 ~~l~~l~~-g~tii~vsHd-l~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 179 KAIRELLK-NKYVIVVDHD-LIVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp HHHHHHCT-TSEEEEECSC-HHHHHHHCSEEEEEEEETTT
T ss_pred HHHHHHhC-CCEEEEEEeC-hHHHHhhCCEEEEecCCccc
Confidence 99999976 8999997666 46889999999999876543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=8.7e-28 Score=285.96 Aligned_cols=186 Identities=20% Similarity=0.232 Sum_probs=140.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC------
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM------ 179 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~------ 179 (697)
..|+|||+.+++|++++|+|+||||||||+ +.+.|...+.+ ... +.|.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 45555433221 012 334454432210
Q ss_pred ----------------------------------------CCccEEEEcCccccCC------------------------
Q 005423 180 ----------------------------------------PYGSYGFVERETTLIG------------------------ 195 (697)
Q Consensus 180 ----------------------------------------~~~~~~yv~Q~~~l~~------------------------ 195 (697)
..+..|++.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012356666555443
Q ss_pred --------CCCHHHHHHHHH-------------HcCCCc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCC
Q 005423 196 --------SLTVREYLYYSA-------------LLQLPG-FFCQRKNGLPCGERRRVRIARELVMRP---HVLFIDEPLY 250 (697)
Q Consensus 196 --------~lTV~e~l~~~~-------------~l~l~~-~~~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTs 250 (697)
.+||.|++.|.. .+++.. ...+...+|||||||||+|||||+.+| +||||||||+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTs 837 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTT
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCC
Confidence 368888887632 123322 235677899999999999999999876 7999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 251 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 251 gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.+
T Consensus 838 GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999999999999998899999977765 455 569999999 8999999999999864
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=3.1e-28 Score=288.09 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=148.5
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~---------~~~~--~~~G--- 168 (697)
..++++|++. ..|+|||+.+++||++||+|+||||||||+++|+ |.+ +++. .+.|
T Consensus 628 ~~L~v~~l~~----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGARE----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEECS----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCcc----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 4578887741 3699999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-CC-----------------------ccEEEEcCcccc----------------------CC----
Q 005423 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTL----------------------IG---- 195 (697)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l----------------------~~---- 195 (697)
.|.++|.++.. ++ +..||++|...+ .+
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888866421 11 123555553211 00
Q ss_pred ----------------------------CCCHHHHHHHH-------------HHcCCCc-cccccCCCCCHHHHHHHHHH
Q 005423 196 ----------------------------SLTVREYLYYS-------------ALLQLPG-FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 196 ----------------------------~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA 233 (697)
.+||.|++.|. ..+++.. ..++.+..|||||||||+||
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 35788877652 1234544 45677889999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEe
Q 005423 234 RELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G 304 (697)
++|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. .++ ..||+|++| ++|++++.|
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEec
Confidence 9999875 99999999999999999999999999998899999977774 454 689999999 789999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+++++.+
T Consensus 936 ~~~el~~ 942 (972)
T 2r6f_A 936 TPEEVAE 942 (972)
T ss_dssp SHHHHHT
T ss_pred CHHHHHh
Confidence 9988754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=1.8e-27 Score=281.06 Aligned_cols=196 Identities=25% Similarity=0.256 Sum_probs=146.3
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHH-HHcCC-------CC--C----------
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PH--S---------- 163 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~-L~G~~-------~~--~---------- 163 (697)
..++++|+++ .+|+|||+.|++||++||+|+||||||||++. |+|++ ++ +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4688999864 26999999999999999999999999999996 77543 12 0
Q ss_pred ---CCcee-------EEEECCEeCCC-CCc-----------------------cEEE----------------------E
Q 005423 164 ---ARMYG-------EVFVNGAKSEM-PYG-----------------------SYGF----------------------V 187 (697)
Q Consensus 164 ---~~~~G-------~I~i~G~~~~~-~~~-----------------------~~~y----------------------v 187 (697)
....| .|.++|.++.. ++. ..|| +
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01356 78999876421 110 0112 1
Q ss_pred cCccccCC--------------------------------CCCHHHHHHHH-------------HHcCCCc-cccccCCC
Q 005423 188 ERETTLIG--------------------------------SLTVREYLYYS-------------ALLQLPG-FFCQRKNG 221 (697)
Q Consensus 188 ~Q~~~l~~--------------------------------~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~ 221 (697)
..+..+++ .+|+.|++.+. ..+++.. ...+.+..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCccc
Confidence 11111111 23555554432 1234433 24677789
Q ss_pred CCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE---
Q 005423 222 LPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL--- 295 (697)
Q Consensus 222 LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL--- 295 (697)
|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+++|+. .++ +.||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~aDrii~L~p~ 808 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AASDWVLDIGPG 808 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCC
Confidence 999999999999999996 799999999999999999999999999998899999977764 566 789999999
Q ss_pred ---eCCeEEEEeCchhhHH
Q 005423 296 ---SNGNTLFFGETLACLQ 311 (697)
Q Consensus 296 ---~~G~iv~~G~~~~~~~ 311 (697)
++|++++.|+++++.+
T Consensus 809 ~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 809 AGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp SGGGCCSEEEEECHHHHTT
T ss_pred CCCCCCEEEEEcCHHHHHh
Confidence 7999999999988753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2.4e-27 Score=281.47 Aligned_cols=196 Identities=21% Similarity=0.235 Sum_probs=144.1
Q ss_pred ceEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee---
Q 005423 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-G----RLP-----HSA--RMYG--- 168 (697)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G----~~~-----~~~--~~~G--- 168 (697)
..++++|++. .+|+|||+.|++||++||+|+||||||||+++|+ | .+. ++. .+.|
T Consensus 646 ~~L~v~~l~~----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGARE----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEECS----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCcc----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 4578888741 3699999999999999999999999999999853 2 221 111 0112
Q ss_pred ---EEEECCEeCCC-CC-----------------------ccEEEEcCcccc----------------------CC----
Q 005423 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTL----------------------IG---- 195 (697)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l----------------------~~---- 195 (697)
.|.+++.++.. ++ +..||++|...+ ++
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 35555544310 10 123455443211 11
Q ss_pred ----------------------------CCCHHHHHHHH-------------HHcCCCc-cccccCCCCCHHHHHHHHHH
Q 005423 196 ----------------------------SLTVREYLYYS-------------ALLQLPG-FFCQRKNGLPCGERRRVRIA 233 (697)
Q Consensus 196 ----------------------------~lTV~e~l~~~-------------~~l~l~~-~~~~~~~~LSGGqrqRv~IA 233 (697)
.+||.|++.|. ..+++.. ...+.+..|||||||||+||
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LA 875 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLA 875 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHH
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHH
Confidence 35777776552 1233433 34567789999999999999
Q ss_pred HHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEe
Q 005423 234 RELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 304 (697)
Q Consensus 234 ~aL~~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G 304 (697)
++|+.+| +||||||||+|||+.+...++++|++++++|.|||+++|+. ..+ +.||+|++| ++|++++.|
T Consensus 876 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 876 SELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp HHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEE
T ss_pred HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEec
Confidence 9999875 99999999999999999999999999998899999977764 455 689999999 689999999
Q ss_pred CchhhHH
Q 005423 305 ETLACLQ 311 (697)
Q Consensus 305 ~~~~~~~ 311 (697)
+++++..
T Consensus 954 ~~~el~~ 960 (993)
T 2ygr_A 954 TPEDVAA 960 (993)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988764
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=4.6e-27 Score=259.01 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE----
Q 005423 222 LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL---- 295 (697)
Q Consensus 222 LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL---- 295 (697)
|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+++|++ ++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 7999999999999999999 9999999999999999999999999998 689999988875 456889999999
Q ss_pred eCCeEEEEeC
Q 005423 296 SNGNTLFFGE 305 (697)
Q Consensus 296 ~~G~iv~~G~ 305 (697)
++|+++....
T Consensus 373 ~~G~~~~~~~ 382 (415)
T 4aby_A 373 EDGRTVSHVR 382 (415)
T ss_dssp ETTEEEEEEE
T ss_pred cCCceEEEEE
Confidence 9999886543
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-29 Score=280.09 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=134.8
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCccEEEEcCcccc---CCCCCHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETTL---IGSLTVRE 201 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~l---~~~lTV~e 201 (697)
.++|+.+++|++++|+||||||||||+|+|+|+.++.+ | + |.++|. .++.++|++|+..+ ...+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~---G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN---AYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH---CCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC---CceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 47899999999999999999999999999999998764 9 8 999983 34678999999843 44578998
Q ss_pred HHHHHHHc-----------------CCCccccccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHH
Q 005423 202 YLYYSALL-----------------QLPGFFCQRKNGLPCGERRRVRIARE--LVMRPHV----LFIDE-PLYHLDSVSA 257 (697)
Q Consensus 202 ~l~~~~~l-----------------~l~~~~~~~~~~LSGGqrqRv~IA~a--L~~~P~i----LlLDE-PTsgLD~~~~ 257 (697)
|+ ++... ++.... ...+|||||||||+|||+ |+.+|++ ||||| ||++||+. .
T Consensus 202 ni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~--~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~ 277 (460)
T 2npi_A 202 PT-WGQSLTSGATLLHNKQPMVKNFGLERIN--ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-L 277 (460)
T ss_dssp TT-CSCBCBSSCCSSCCBCCEECCCCSSSGG--GCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-C
T ss_pred hh-cccccccCcchHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-H
Confidence 88 53221 011111 156899999999999999 9999999 99999 99999998 5
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecCh--H---HHHhccCE-----EEEEe-CCeEEEEeCchhh
Q 005423 258 LLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 309 (697)
Q Consensus 258 ~~i~~~L~~l~~~g~tvi~tih~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 309 (697)
..+.+++++ .+.|+|+++|+.. . ++.++||+ |++|+ +|+++ .|+++++
T Consensus 278 ~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 278 AELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 445544444 3778888888765 1 56689999 99999 99999 8988765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=3.7e-24 Score=232.71 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=76.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 217 QRKNGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. . .+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCC
Confidence 455789999999999999999 699999999999999999999999999999988999999888763 3 67899
Q ss_pred EEEEEeCCeEEE
Q 005423 291 RICLLSNGNTLF 302 (697)
Q Consensus 291 ~v~vL~~G~iv~ 302 (697)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=2.1e-25 Score=216.70 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=99.7
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc-CCCCCHHHHHHHH
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL-IGSLTVREYLYYS 206 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l-~~~lTV~e~l~~~ 206 (697)
|||+++++||+++|+||||||||||+|++.+ |...+++.. ..++++|+..- ....++.+.+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHH
Confidence 6899999999999999999999999998642 111121110 12455554321 1112344544332
Q ss_pred HH----cCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHH
Q 005423 207 AL----LQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------------SALLMMVTLKK 266 (697)
Q Consensus 207 ~~----l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------------~~~~i~~~L~~ 266 (697)
.. .+... ........|||||||++|||+|+.+|++|+|||||++||+. ...++.+.|++
T Consensus 66 ~~~~~~~g~~~-~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~ 144 (171)
T 4gp7_A 66 VSKRLQLGKLT-VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKG 144 (171)
T ss_dssp HHHHHHTTCCE-EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhCCCeE-EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhh
Confidence 21 11111 12334556999999999999999999999999999999999 66899999999
Q ss_pred HHHcCCEEEEEEecChHHH
Q 005423 267 LASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 267 l~~~g~tvi~tih~~~~~i 285 (697)
++++|.|+|+++|++ .++
T Consensus 145 l~~~g~tvi~vtH~~-~~~ 162 (171)
T 4gp7_A 145 LQREGFRYVYILNSP-EEV 162 (171)
T ss_dssp HHHHTCSEEEEECSH-HHH
T ss_pred HHhcCCcEEEEeCCH-HHh
Confidence 987899999988875 344
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=5.9e-24 Score=227.21 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=73.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 217 QRKNGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 217 ~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.....||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~ 291 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLL 291 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceE
Confidence 345789999999999999997 5789999999999999999999999999985 578999988875 467899987
Q ss_pred --EEEeCCeE-EEEeCchh
Q 005423 293 --CLLSNGNT-LFFGETLA 308 (697)
Q Consensus 293 --~vL~~G~i-v~~G~~~~ 308 (697)
++|.+|+. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=7.3e-27 Score=234.66 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=95.7
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCccEEEEcCccccCCCCCH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (697)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|+. |+|.... .+....++.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35688986 79999999999999999999999999 8764 7763211 11112345799999975
Q ss_pred HHHH-HHH-----HHcCCCc--ccccc-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 200 REYL-YYS-----ALLQLPG--FFCQR-KNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 200 ~e~l-~~~-----~~l~l~~--~~~~~-~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+||+ .+. ....... ...+. ..+| ||||||+|||||+.+|++|||||||+| ++..+++.|+++ ++
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~ 148 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEAGI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GF 148 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHTTS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhCC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cC
Confidence 3333 111 1111000 00000 0144 999999999999999999999999999 889999999998 67
Q ss_pred CCEEEEEEecCh
Q 005423 271 GCTLLFTINQSS 282 (697)
Q Consensus 271 g~tvi~tih~~~ 282 (697)
|+||| ++|+..
T Consensus 149 g~tii-vtHd~~ 159 (208)
T 3b85_A 149 GSKMV-VTGDIT 159 (208)
T ss_dssp TCEEE-EEEC--
T ss_pred CCEEE-EECCHH
Confidence 89999 888763
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=3.7e-25 Score=216.91 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=104.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC--c
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP--G 213 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~--~ 213 (697)
.++|+||||||||||+|+|+|+++. ...|... .... ...+.++|++|+. ++.+++ + +.+... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~~~~ 68 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFTSKK 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETTCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-HhhcCCccc
Confidence 5899999999999999999998742 1223221 1111 2235689999975 222222 0 011111 1
Q ss_pred cccccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe--cChHH
Q 005423 214 FFCQRKNGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMVTLKKLASTGCTLLFTIN--QSSTE 284 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~a-----L~~~P~iLlLDE--PTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih--~~~~~ 284 (697)
...++...||||||||++||++ |+.+|++|+||| ||++||+..+..+.+.|++ .+.|+|+++| |+...
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchH
Confidence 3445667899999999999996 999999999999 9999999999999988876 5677888887 77788
Q ss_pred HHhccCEEEEEeCCeEEE
Q 005423 285 VFGLFDRICLLSNGNTLF 302 (697)
Q Consensus 285 i~~~~D~v~vL~~G~iv~ 302 (697)
+..++|+ .+|++++
T Consensus 146 ~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 146 VKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC----TTCEEEE
T ss_pred HHHHHhc----CCcEEEE
Confidence 8888998 5567665
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=1.2e-24 Score=239.26 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=120.5
Q ss_pred CcceeeeeeeEEcCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 005423 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge--------------------~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (697)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+++. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 3568999999999999 999999999999999999999998875 99999987542 1
Q ss_pred ccEEEEcCccccCCCCCHHHHHHHH----------HHcCCCccccccCCCCCHH--HHHHHHHHHHHhh----------C
Q 005423 182 GSYGFVERETTLIGSLTVREYLYYS----------ALLQLPGFFCQRKNGLPCG--ERRRVRIARELVM----------R 239 (697)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~e~l~~~----------~~l~l~~~~~~~~~~LSGG--qrqRv~IA~aL~~----------~ 239 (697)
.++++|++ .++.+|+.|++.+. ..+++.+. ..... |||| ||||+.||++|+. +
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred --eEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 26788874 34556665554332 11222221 12223 9999 9999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEEecChH-HHHhccCEE
Q 005423 240 PHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRI 292 (697)
Q Consensus 240 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~tih~~~~-~i~~~~D~v 292 (697)
|++++|||||+|||+.++.++++.|+++. +.| .++++++|.... .+.+++|++
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999999999999999999999999985 332 567776665432 255566654
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=8.6e-23 Score=216.30 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=124.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccc-c
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (697)
++++|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356788889999999999999999999999999988765 9999999765321 135899999988 8
Q ss_pred CCCCCHHHHHHHHHHcC----------CCccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHH
Q 005423 194 IGSLTVREYLYYSALLQ----------LPGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~l~----------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~ 261 (697)
++.+|++|++.++...+ +.+..++.+.+|| |||++|||+|+.+|+ +|+|| ||+|||+..+
T Consensus 167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~---- 238 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ---- 238 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH----
T ss_pred CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH----
Confidence 88899999998764321 1111223345788 999999999999999 99999 9999998765
Q ss_pred HHHHHHH-HcCCEEEEEEecCh--------HHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLA-STGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~-~~g~tvi~tih~~~--------~~i~~~~D~v~vL~~G~i 300 (697)
++++. +.|.|+|+++|.+. +.+....+.|.++..|+.
T Consensus 239 --~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 --AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp --HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 34565 35889999888442 334456678888888864
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.5e-22 Score=217.02 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=107.3
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCccEEEEcCccccCCCCCHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
+++++++.+++|++++|+||||||||||+++|+|+++++. |.|.++|.+... .++.++++.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~g------------ 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFFG------------ 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEECB------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEeC------------
Confidence 7899999999999999999999999999999999999875 999999864211 1233444431
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
|||+||++||+||..+|++|++||||+ .++.+.|+.+...+.|+|+|+|.+
T Consensus 225 ----------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 225 ----------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp ----------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECS
T ss_pred ----------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEccc
Confidence 899999999999999999999999998 245677887765455789989987
Q ss_pred hHHHHhccCEEEEEeCCe
Q 005423 282 STEVFGLFDRICLLSNGN 299 (697)
Q Consensus 282 ~~~i~~~~D~v~vL~~G~ 299 (697)
+ +.+.+||+++|.+|+
T Consensus 276 ~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 276 S--SEEAFIRLANMSSSN 291 (330)
T ss_dssp S--HHHHHHHHHHHHHTS
T ss_pred H--HHHHhhhheehhcCC
Confidence 5 667899999998775
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=5.2e-24 Score=225.24 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=115.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEE
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (697)
++++||++.|. +.+|+++|+.+++|++++|+||||||||||+++|+|++ . |+|..
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~~------------- 156 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVLS------------- 156 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEEC-------------
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEEE-------------
Confidence 67788887763 46999999999999999999999999999999999998 2 88853
Q ss_pred EEcCccccCCCCCHHH-HHH-----------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005423 186 FVERETTLIGSLTVRE-YLY-----------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 253 (697)
Q Consensus 186 yv~Q~~~l~~~lTV~e-~l~-----------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 253 (697)
|++|++.++.. |++| |+. +...+ ++..++ ...|||||||| ||||+.+|+||| ||+||
T Consensus 157 ~v~q~~~lf~~-ti~~~ni~~~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 157 FANHKSHFWLA-SLADTRAALVDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp GGGTTSGGGGG-GGTTCSCEEEEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred EecCccccccc-cHHHHhhccCccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 33444433321 3333 221 11111 444443 77999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 254 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 254 ~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
+.++..|..+ +|++ ...+.||+| +|++|++++.|+.+++...|..
T Consensus 226 ~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 226 VQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp STTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999888621 3443 245789999 9999999999999887444443
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-21 Score=211.61 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=125.3
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccc-cC
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (697)
+.+|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788899999999999999999999999999988765 9999999765321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHcCC----------CccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQL----------PGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMV 262 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l----------~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~ 262 (697)
+..|++|++.++...+. .+..++.+.+|| |||++|||+|+.+|+ +|+|| ||+|||+..+.
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---- 296 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---- 296 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH----
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH----
Confidence 88899999988643211 111223345788 999999999999999 99999 99999988653
Q ss_pred HHHHHHH-cCCEEEEEEecCh--------HHHHhccCEEEEEeCCe
Q 005423 263 TLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 263 ~L~~l~~-~g~tvi~tih~~~--------~~i~~~~D~v~vL~~G~ 299 (697)
+++.+ .|.|+|+++|.+. +.+....+.|..+..|+
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 45553 5889999888542 23445667888888776
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=2.3e-23 Score=231.22 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=148.3
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (697)
.++.+++++.+.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~---G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV---IVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEeceecHHHHHHH
Confidence 4677888877641 35699999 9999999999999999999999999999998864 99999997 3211
Q ss_pred --------CCccEEEEcCc-cccCCCCCHHHHHHHHHHc-CCCc-c---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 180 --------PYGSYGFVERE-TTLIGSLTVREYLYYSALL-QLPG-F---FCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 180 --------~~~~~~yv~Q~-~~l~~~lTV~e~l~~~~~l-~l~~-~---~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
..+.++|++|+ +.+++.+||.+|+.+.+.. +... . .-.....+|+|| |||+|| +.+|++
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~--- 275 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA--- 275 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc---
Confidence 13568999995 5667788999998875532 1110 0 112246799999 999999 889988
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 311 (697)
|+|||+.+...+.++++++.+ + |. ||++++|+.. ..+||++++|.+|+++..|++.+...
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHccC
Confidence 999999999999999999976 3 64 8888777764 46799999999999999998877543
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=2e-19 Score=194.63 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 221 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 221 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998874 57777666 43 2 8999
Q ss_pred EEEEeCCeEEEEeCchhh
Q 005423 292 ICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 292 v~vL~~G~iv~~G~~~~~ 309 (697)
+++|++|+++..|+++++
T Consensus 337 i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEETTEEEECCCTTTS
T ss_pred EEEEECCEEEecCCHHHH
Confidence 999999999999998875
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=3.7e-22 Score=208.23 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=91.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc--
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-- 213 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~-- 213 (697)
.++|+||||||||||+|+|+|+.++.. |+|.++|++... ..+.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 479999999999999999999988875 999999986532 2357999999999999999999987764321110
Q ss_pred ----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 214 ----------FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 214 ----------~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
..+....+||||||||++|||+++. ++++||||.|||+.. .+.++++.+. .++|+++|..
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTG
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecc
Confidence 1122346899999999999999876 999999999999887 5666777665 8888888763
No 79
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=4.6e-20 Score=209.39 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 220 NGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 220 ~~L-SGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++. +...||++++|+
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 356 999999999999999999 99999999999999999999999999987 899999888853 446799999996
Q ss_pred CC
Q 005423 297 NG 298 (697)
Q Consensus 297 ~G 298 (697)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=5.2e-23 Score=205.69 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=109.6
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCccEEEEcCccccCCCCCHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
..+++| ..+++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|++.+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 68889999999999999999999999999862 223322223221 112356899999987777666666
Q ss_pred HHHHH----H--H-cCCCcc-cc---ccC------CCCCHHHHHHHHHHH---HHhhCCCEEEEeCCCCCC----CHHHH
Q 005423 202 YLYYS----A--L-LQLPGF-FC---QRK------NGLPCGERRRVRIAR---ELVMRPHVLFIDEPLYHL----DSVSA 257 (697)
Q Consensus 202 ~l~~~----~--~-l~l~~~-~~---~~~------~~LSGGqrqRv~IA~---aL~~~P~iLlLDEPTsgL----D~~~~ 257 (697)
++... . . .+.+.. .. ... -++.|.+.++-..+. +|+.+|++++|||||+|+ |+..+
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~ 163 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQ 163 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHH
Confidence 54210 0 0 000000 00 000 235566655555555 788999999999999998 78899
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 258 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 258 ~~i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
.++.+.++++++ .|.|+|+++|+ ..++.++||+|++|.
T Consensus 164 ~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 164 RRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 999999999984 58999997665 578999999999985
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=4.8e-19 Score=190.52 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=71.3
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 217 QRKNGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 217 ~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 345789999999 67778888889999999999999999999999999999988889999988874 5778999
Q ss_pred EEEEEe--CCe
Q 005423 291 RICLLS--NGN 299 (697)
Q Consensus 291 ~v~vL~--~G~ 299 (697)
++++|+ +|.
T Consensus 322 ~~~~l~~~~g~ 332 (339)
T 3qkt_A 322 HVIRISLENGS 332 (339)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCc
Confidence 999995 454
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.79 E-value=1.9e-22 Score=203.60 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=100.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------CCCccEEEEcCccccCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------MPYGSYGFVERETTLIGSL 197 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------~~~~~~~yv~Q~~~l~~~l 197 (697)
.-|+|||+++++|++++|+||||||||||+++|+|+. | |+|.+ |.+.. ...+.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 3 67888 65421 1235688999887655432
Q ss_pred CH-HHHHH---------------HHHHcCCCccccccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHH
Q 005423 198 TV-REYLY---------------YSALLQLPGFFCQRKNGLPCGERRRVRI-----ARELVMRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 198 TV-~e~l~---------------~~~~l~l~~~~~~~~~~LSGGqrqRv~I-----A~aL~~~P~iLlLDEPTsgLD~~~ 256 (697)
+. .+++. ....+..... ......||||||||++| +++|+.+|++++|||||+++|..+
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~-~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~ 162 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI-CLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTEN 162 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCE-EEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCC
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCc-EEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCC
Confidence 10 00000 0000111110 01125789999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
...|.+.|+++.++ .| + .| ...||.|+++++
T Consensus 163 ~~~i~~~l~~~~~~-~~--~-~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 163 QEQIQKRMEQLNIE-LH--E-AN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHHHHH-HH--H-HT------TSCCSEEEECSS
T ss_pred HHHHHHHHHHHHHH-HH--h-hc------ccCCCEEEECCC
Confidence 99999999887643 23 1 23 145777776653
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.1e-19 Score=206.51 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=114.8
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc--C-----CCCCHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL--I-----GSLTVREY 202 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l--~-----~~lTV~e~ 202 (697)
++.+++|++++|+||||||||||+++++|..++. |+ +.+.+++|++.. . -...+.+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~~~l~~~~~~~g~~~~~~ 338 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESRAQLLRNAYSWGMDFEEM 338 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCHHHHHHHHHHcCCCHHHH
Confidence 5689999999999999999999999999987664 43 012233333210 0 01223221
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCEEEEE
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SALLMMVTLKKLASTGCTLLFT 277 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~-----~~~~i~~~L~~l~~~g~tvi~t 277 (697)
. ..++....+..+..|||||+||+++|+++..+|++|++| ||+|||.. .+..+.++++.+++.|.|||++
T Consensus 339 ~----~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 339 E----RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp H----HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred H----hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 122223345667889999999999999999999999999 99999999 9999999999999899999999
Q ss_pred EecCh---------HHHHhccCEEEEEeCCe
Q 005423 278 INQSS---------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 278 ih~~~---------~~i~~~~D~v~vL~~G~ 299 (697)
+|+.. ..+..+||+|++|++|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99861 45678999999999887
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=9.4e-20 Score=191.73 Aligned_cols=170 Identities=16% Similarity=0.084 Sum_probs=113.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCccEEEEcCccccCCCCCH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (697)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++..+.+...+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 468999999999999999999999999999999999987653 6 66543322111 01122222222211 11
Q ss_pred HHHHHH------------HHHcC-CCccccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHH
Q 005423 200 REYLYY------------SALLQ-LPGFFCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLY---H---LDS-VSAL 258 (697)
Q Consensus 200 ~e~l~~------------~~~l~-l~~~~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs---g---LD~-~~~~ 258 (697)
.+++.. ...+. .+-.....+..+|.+| +||+. |+++..+|++||+||||+ + +|. ....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~ 173 (296)
T 1cr0_A 95 SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMID 173 (296)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHH
Confidence 112211 11111 1111223346789999 66666 999999999999999999 5 555 6778
Q ss_pred HHHHHHHHHHH-cCCEEEEEEecC-hH--------------------HHHhccCEEEEEeCCeE
Q 005423 259 LMMVTLKKLAS-TGCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 300 (697)
Q Consensus 259 ~i~~~L~~l~~-~g~tvi~tih~~-~~--------------------~i~~~~D~v~vL~~G~i 300 (697)
++++.|+++++ .|+|||+++|.. .. .+.++||+|++|++|+.
T Consensus 174 ~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 174 NLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 89999999985 499999988885 13 67789999999998874
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=4.7e-19 Score=211.94 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCccEEEEcCcccc
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (697)
.+.+++|+++.+++|++++|+||||||||||||++ .|..-|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 35789999999999999999999999999999999 55433321 110 1111 112
Q ss_pred CCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-
Q 005423 194 IGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAS- 269 (697)
Q Consensus 194 ~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~- 269 (697)
+..+...+ ....++|+|+++++.+|++| +.+|+++||||||+|||+.....+ ..+++.+++
T Consensus 709 ~~~ig~~d---------------~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~ 773 (934)
T 3thx_A 709 LARVGAGD---------------SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK 773 (934)
T ss_dssp EEECC------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCchh---------------hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 21111111 22357899999999999998 999999999999999999999888 677788886
Q ss_pred cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhH
Q 005423 270 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 310 (697)
Q Consensus 270 ~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 310 (697)
.|.++|+++|+. ++.+++|++..+.+|++...++.+++.
T Consensus 774 ~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 774 IGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp TCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 489999988874 567899999999999999999887754
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=4.9e-20 Score=222.86 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=118.7
Q ss_pred eEEEEe-----EEEEEecccccCcceeeeeeeEEcC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 105 SVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 105 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
.+.++| |++.+. ..+.+++|+++.+++ |++++|+||||||||||||+| |++++-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 589999 887763 235799999999987 999999999999999999999 986531
Q ss_pred CCEeCCCCCccEE-EEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005423 173 NGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH 251 (697)
Q Consensus 173 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 251 (697)
.++| ||||+.. .+||.|++. ..++..+........+|+|++ ++++|++++.+|+++||||||+|
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~--~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~G 880 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVF--TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRG 880 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEE--EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTT
T ss_pred ---------hheeEEeccCcC---CCCHHHHHH--HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCC
Confidence 1234 7777653 334444431 112222222233456677666 49999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHHHHc-CCEEEEEEecChHHHHhccCEEEEEeCCeEE--EEeCch
Q 005423 252 LDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL--FFGETL 307 (697)
Q Consensus 252 LD~~~~-~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv--~~G~~~ 307 (697)
+|+... ..+.++|++++++ |.++|+++|+. ..+..++|++.++ +|+++ +.|+++
T Consensus 881 td~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 881 TATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC------
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCcc
Confidence 999884 5578999999876 89999988775 5677789999887 58887 455543
No 87
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=3.1e-20 Score=189.11 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=104.7
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccCCCCCHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
+-+++||+++|+||||||||||+++|+ |+.+++. |.+.+++..... ..+.+++++|+....+.+++.++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 478899999999999999999999999 6634443 677776643211 1134567777654444444444332
Q ss_pred HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHcCCEEEEEEe
Q 005423 205 YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLASTGCTLLFTIN 279 (697)
Q Consensus 205 ~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD-----~~~~~~i~~~L~~l~~~g~tvi~tih 279 (697)
........ .........+.++..+...+..-..+|+++++||||++|| ...+..+.++++.+++.|+|||+++|
T Consensus 102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 102 SVVGLPSE-EKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred cccccccc-cceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 21110000 0001112234556555555555568999999999999998 67777799999999988999999888
Q ss_pred cChHHH---------Hhcc-CEEEEEe
Q 005423 280 QSSTEV---------FGLF-DRICLLS 296 (697)
Q Consensus 280 ~~~~~i---------~~~~-D~v~vL~ 296 (697)
... ++ ..+| |++++|+
T Consensus 181 ~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 181 APD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCC-CCcccccccChhhEeeeEEEEEe
Confidence 764 44 5788 9999995
No 88
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=2e-19 Score=180.81 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=106.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC--CC--CceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~--~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+-+++||+++|+||||||||||+++|+|...+ +. ...|.|++++... ...+.++++.|+..+.+. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 56889999999999999999999999995433 11 1225788877542 112356677776665544 666664321
Q ss_pred HHcCCCccccccCCCCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCG-ERRRVRIARELVM-------RPHVLFIDEPLYHLDSV-------S-----ALLMMVTLKK 266 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGG-qrqRv~IA~aL~~-------~P~iLlLDEPTsgLD~~-------~-----~~~i~~~L~~ 266 (697)
...+++ +++++..+++++. +|+++++||||++||+. . ..++++.|++
T Consensus 98 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~ 164 (231)
T 4a74_A 98 -------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 164 (231)
T ss_dssp -------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 123444 4445777777777 99999999999999984 2 2378888888
Q ss_pred HHH-cCCEEEEEEecCh---HHHHhccCEEEEEeCCe
Q 005423 267 LAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 267 l~~-~g~tvi~tih~~~---~~i~~~~D~v~vL~~G~ 299 (697)
+++ .|.|||+++|... ..+...+|++++|++|+
T Consensus 165 ~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 165 LANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 874 5999999888432 24778899999998754
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=7e-19 Score=209.61 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=89.3
Q ss_pred HcCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 208 LLQLPGF-FCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 208 ~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
.+++... .++...+|||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.|||+++|+. ..
T Consensus 450 ~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~-~~ 528 (916)
T 3pih_A 450 DVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE-EV 528 (916)
T ss_dssp TTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH-HH
T ss_pred HcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HH
Confidence 3455432 467789999999999999999999887 9999999999999999999999999998899999987764 44
Q ss_pred HHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 285 VFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 285 i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
+ ..||+|++| ++|++++.|+++++.+
T Consensus 529 ~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 529 I-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp H-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred H-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 5 559999999 8999999999998764
No 90
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=8.7e-21 Score=204.58 Aligned_cols=183 Identities=13% Similarity=0.066 Sum_probs=133.5
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-------C
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-------E 178 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-------~ 178 (697)
++.+++++.+.. ..++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.+.|++. .
T Consensus 46 i~~~~l~~~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~---g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 46 LLRQVIDQPFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI---IVLALIGERGREVNEFLA 117 (347)
T ss_dssp TTCCCCCSEECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHHT
T ss_pred eeecccceecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEecccHHHHHHHHH
Confidence 566777777742 35799999 9999999999999999999999999999998864 9999988641 1
Q ss_pred C-----CCccEEEEcCcccc-CCCCCHHHHHHH-HHHcCCCc-c---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 179 M-----PYGSYGFVERETTL-IGSLTVREYLYY-SALLQLPG-F---FCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 179 ~-----~~~~~~yv~Q~~~l-~~~lTV~e~l~~-~~~l~l~~-~---~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
. ..+.+.++.|.+.- ....++.++... +...+-.+ . .-+....||+|| |||++| +.+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp TSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred hhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 1 12346777765321 111122222111 11111100 0 013457899999 899999 688887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
|+|||+.....+.++++++.+ +|. ||++++|+.. ..+||++++|.+|+++..|+..+.
T Consensus 189 -t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999974 476 7888777654 467999999999999999988765
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.74 E-value=3.9e-21 Score=204.52 Aligned_cols=106 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~ 212 (697)
+++|+++||+||||||||||+++|+|++++.. |. ..+++|+|++.+++. |++||+.+....+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 78999999999999999999999999987742 32 458999999999887 999987542111111
Q ss_pred -----------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005423 213 -----------------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 254 (697)
Q Consensus 213 -----------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 254 (697)
+..+.....|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 151 ~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 ESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 111234468999999999999999999999999999999986
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.73 E-value=4e-19 Score=184.37 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=98.4
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
++|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++.... ...+++.|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 4899999 8999999999999999999999999998764 1399999887643211 122333332
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
.+++. ... -|++||++|..+|++|++|||| |+.+...++ +. ++.|.+|++++|...
T Consensus 79 -----~~gl~------~~~------l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 79 -----EVGED------TKS------FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT 134 (261)
T ss_dssp -----EBTTT------BSC------HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS
T ss_pred -----HhCCC------HHH------HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch
Confidence 01111 112 2899999999999999999999 988866544 33 457999999998864
Q ss_pred HHHHhccCEEEEEeC
Q 005423 283 TEVFGLFDRICLLSN 297 (697)
Q Consensus 283 ~~i~~~~D~v~vL~~ 297 (697)
+...+||+++|..
T Consensus 135 --~~~~~dri~~l~~ 147 (261)
T 2eyu_A 135 --AIDTIHRIVDIFP 147 (261)
T ss_dssp --HHHHHHHHHHTSC
T ss_pred --HHHHHHHHhhhcC
Confidence 5678999888753
No 93
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=7.2e-18 Score=160.09 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=73.9
Q ss_pred cccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 216 CQRKNGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA------~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
++.+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456689999999999876 899999999999999999999999999999999987799999988886 467899
Q ss_pred CEEEEE--eCCeE
Q 005423 290 DRICLL--SNGNT 300 (697)
Q Consensus 290 D~v~vL--~~G~i 300 (697)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 46643
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=6.5e-20 Score=188.04 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=100.9
Q ss_pred cCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHH
Q 005423 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+.+.+|+|+|+++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 3457999999999999999999999999999999999975 323333 1235689999985 67788999
Q ss_pred HHHHHHHHc-CC--C----------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005423 201 EYLYYSALL-QL--P----------------GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 201 e~l~~~~~l-~l--~----------------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~ 261 (697)
|++.+.... .. + .........+|+||+||+++ ++++.+|+++|+|||...+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~------ 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE------ 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH------
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH------
Confidence 988654211 00 0 11123447899999999988 5888899999999998888864
Q ss_pred HHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeCchhhHHh
Q 005423 262 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 312 (697)
Q Consensus 262 ~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 312 (697)
+.++ .+.+|++++|........+++++ ++|+ +.+++.+.
T Consensus 150 --l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 150 --IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp --HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred --HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2222 37788887776443333344444 5564 45555543
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=3.4e-19 Score=202.65 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=119.4
Q ss_pred Ccceeeeeee-EEcCCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccC
Q 005423 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (697)
Q Consensus 122 ~~~iL~~vs~-~v~~Ge~~aIiG~sGsGKSTLl~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (697)
..++|++|++ .+++||+++|+||||||||||+++ ++|+.+|+. |.|+++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4579999999 999999999999999999999999 789988765 999999976311 124578998875421
Q ss_pred CCCCHHHHHHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV-MRPHVLFIDEPLY-----HLDSVSALLMMVTLKK 266 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~-~~P~iLlLDEPTs-----gLD~~~~~~i~~~L~~ 266 (697)
+. +.+ ..... ...+....+.-++ +.-.+..+|. .+|+++++||||+ +||+..+.++.+++++
T Consensus 101 ~~------l~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~ 170 (525)
T 1tf7_A 101 GK------LFI---LDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVAR 170 (525)
T ss_dssp TS------EEE---EECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHH
T ss_pred Cc------EEE---EecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 000 00000 0000011222233 4455566663 6899999999998 4699999999999999
Q ss_pred HHHcCCEEEEEEecChHH--------HHhccCEEEEEeCCe
Q 005423 267 LASTGCTLLFTINQSSTE--------VFGLFDRICLLSNGN 299 (697)
Q Consensus 267 l~~~g~tvi~tih~~~~~--------i~~~~D~v~vL~~G~ 299 (697)
+++.|+|||+++|+.... +..+||+|++|++|+
T Consensus 171 l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 171 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998899999999987532 345699999999843
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.70 E-value=2.8e-18 Score=201.79 Aligned_cols=148 Identities=20% Similarity=0.152 Sum_probs=108.2
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (697)
.+.+++|+++. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHH
Confidence 35789999998 99999999999999999999999853 332 5432 112245777766 56677888
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCEE
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEP---LYHLDSVSA-LLMMVTLKKLASTGCTL 274 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP---TsgLD~~~~-~~i~~~L~~l~~~g~tv 274 (697)
|++.. ++|+|+++++.+|++| +.+|+++||||| |++||..+. ..+++.|++ .|.|+
T Consensus 630 d~l~~---------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~v 691 (765)
T 1ewq_A 630 DDLAG---------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYT 691 (765)
T ss_dssp --------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEE
T ss_pred HHHHh---------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEE
Confidence 87642 5799999999999999 999999999999 999998875 578887766 58899
Q ss_pred EEEEecChHHHHhccCEEEEEeCCeEEEEeCc
Q 005423 275 LFTINQSSTEVFGLFDRICLLSNGNTLFFGET 306 (697)
Q Consensus 275 i~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~ 306 (697)
|+++|+. +..+++ .--+.++++......
T Consensus 692 l~~TH~~--~l~~~~--~~~v~n~~~~~~~~~ 719 (765)
T 1ewq_A 692 LFATHYF--ELTALG--LPRLKNLHVAAREEA 719 (765)
T ss_dssp EEECCCH--HHHTCC--CTTEEEEEEEEECCS
T ss_pred EEEeCCH--HHHHhh--hhcceEEEEEEEEcC
Confidence 9988874 344555 223445555554443
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.70 E-value=1.6e-17 Score=198.28 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=105.5
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+++||++.+++|++++|+||||||||||||++++..-.. ..| .........++ .-+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vpa~~~~i~---~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVPAEEATIG---IVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBSSSEEEEE---CCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------ccccchhhhhh---HHHHHHHhCChHH
Confidence 467999999999999999999999999999999998642110 001 00000001122 2233444444444
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCEEEEEEe
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAS-TGCTLLFTIN 279 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~-~g~tvi~tih 279 (697)
++. ...+.+|+|++|++.|+++ +.+|+++||||||+|||+.....+. .+++.+++ .|.|+|+++|
T Consensus 728 ~l~------------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH 794 (918)
T 3thx_B 728 NIY------------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH 794 (918)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHH------------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 432 3346789999999999999 8999999999999999999999997 78888875 6899999888
Q ss_pred cChHHHHhccCEEEE-EeCCeEEE
Q 005423 280 QSSTEVFGLFDRICL-LSNGNTLF 302 (697)
Q Consensus 280 ~~~~~i~~~~D~v~v-L~~G~iv~ 302 (697)
+. ++.+++|+.-- +.++++.+
T Consensus 795 ~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 795 YP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CG--GGGGHHHHTTTTEEEEEEEE
T ss_pred cH--HHHHHHhhcccceEEEEEEE
Confidence 75 45567765431 34444433
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.69 E-value=3.4e-17 Score=194.17 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHcCCCc----------------------------cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEE
Q 005423 196 SLTVREYLYYSALLQLPG----------------------------FFCQRKNGLPCGERRRVRIARELVMRP--HVLFI 245 (697)
Q Consensus 196 ~lTV~e~l~~~~~l~l~~----------------------------~~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlL 245 (697)
.+||.|++.|...+.++. ..++...+|||||||||+||++|..+| ++|||
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 530 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVL 530 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 578888888865544332 135566899999999999999999985 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
||||+|||+.....++++|++|++.|.|||++.|+. .++ ..||+|++| ++|++++.|+++++..
T Consensus 531 DEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred eCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 999999999999999999999998999999977765 444 579999999 7999999999988753
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=3.5e-18 Score=181.07 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=106.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccccCCCCCHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
+|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..+++++|+..+.+..+|+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999998875 9999999875321 13589999999888888999999
Q ss_pred HHHHHcCC-------CccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEE
Q 005423 204 YYSALLQL-------PGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLL 275 (697)
Q Consensus 204 ~~~~~l~l-------~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi 275 (697)
.+....+. .+..+...+-++..++||++|||+|+.+|+.++| .||+.+..++++.++++.+. |.|+|
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGV 252 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEE
Confidence 87643221 1111122223456679999999999999995444 45555556677778888754 88999
Q ss_pred EEEecCh
Q 005423 276 FTINQSS 282 (697)
Q Consensus 276 ~tih~~~ 282 (697)
+++|.+.
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 9888753
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.68 E-value=5e-17 Score=163.02 Aligned_cols=166 Identities=13% Similarity=-0.017 Sum_probs=109.3
Q ss_pred cceeeeeee-EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCC
Q 005423 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGS 196 (697)
Q Consensus 123 ~~iL~~vs~-~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~ 196 (697)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+.... ...+++..|+.... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 456888885 899999999999999999999999998765433 6666644321100 00112222211000 0
Q ss_pred CCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cC
Q 005423 197 LTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH--VLFIDEPLYHL--DSVSALLMMVTLKKLAS-TG 271 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgL--D~~~~~~i~~~L~~l~~-~g 271 (697)
+.+.+... ...+ +. ......|.+|.++...+.....+|+ +|++||||+++ |+....++++.|+++++ .|
T Consensus 85 ~~~~~~~~--~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 85 LIIIDALM--KEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp EEEEECCC-------CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred EEEEeccc--cccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 00000000 0000 00 0112449999999888888888999 99999999888 99999999999999974 58
Q ss_pred CEEEEEEecCh-------HHHHhccCEEEEEeCC
Q 005423 272 CTLLFTINQSS-------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 272 ~tvi~tih~~~-------~~i~~~~D~v~vL~~G 298 (697)
.|||+++|... ..+.++||+|++|++.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999887762 3478899999999754
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.67 E-value=7.2e-18 Score=199.39 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=112.6
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+.+++|+++. ++|++++|+||||||||||||+|+|+..... .| .........++++.| ++..+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35799999999 9999999999999999999999999742210 12 111111234555554 566678888
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEe
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTIN 279 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~tih 279 (697)
++... .+.+|+|++ +++.+..++.+|+++|||||++|+|+.....+ .++++.+++ .|.++|+++|
T Consensus 662 ~l~~~------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH 728 (800)
T 1wb9_A 662 DLASG------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 728 (800)
T ss_dssp --------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHhh------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeC
Confidence 77532 134676665 45555567899999999999999998877775 788899987 4999999888
Q ss_pred cChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 280 QSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
+. ++.+++|++..+.+|++.+....+++
T Consensus 729 ~~--el~~l~d~~~~v~n~~~~~~~~~~~l 756 (800)
T 1wb9_A 729 YF--ELTQLPEKMEGVANVHLDALEHGDTI 756 (800)
T ss_dssp CG--GGGGHHHHSTTEEEEEEEEEEETTEE
T ss_pred CH--HHHHHhhhhhceEEEEEEEEEcCCcE
Confidence 85 34578999888888988776654443
No 102
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.66 E-value=1.9e-16 Score=188.48 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=85.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
.++...+|||||||||+||++|..+ |++|||||||+|||+.....++++|++|++.|.|||++.|+. .. .+.||+|
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrI 592 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWI 592 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEE
Confidence 4566789999999999999999999 589999999999999999999999999999999999977764 44 4689999
Q ss_pred EEE------eCCeEEEEeCchhhHH
Q 005423 293 CLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 293 ~vL------~~G~iv~~G~~~~~~~ 311 (697)
++| ++|++++.|+++++..
T Consensus 593 i~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 593 VDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEecCccccCCCEEEEeeCHHHhhh
Confidence 999 7999999999988754
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.65 E-value=2.2e-18 Score=186.11 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=112.0
Q ss_pred ceeeee-eeEEcCCcEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCccEEEEcCccccCCCCC
Q 005423 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (697)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (697)
..|+.+ .+.+++|++++|+||||||||||++.|++.. +++. ...|+ |++++.... ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 5889999999999999999999999999987 4321 11367 899886531 23467788887665543 5
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH------------HHH
Q 005423 199 VREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVS------------ALL 259 (697)
Q Consensus 199 V~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~-------~~P~iLlLDEPTsgLD~~~------------~~~ 259 (697)
+.+|+.+.. ..-|++|+|++.++++++ .+|++|++||||++||+.. ..+
T Consensus 196 v~~ni~~~~------------~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~ 263 (349)
T 1pzn_A 196 VLKHIYVAR------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 263 (349)
T ss_dssp HGGGEEEEE------------CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHH
T ss_pred HhhCEEEEe------------cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHH
Confidence 555543210 012678999999999999 6899999999999999852 456
Q ss_pred HHHHHHHHHH-cCCEEEEEEecChHHHHhccCEEEEEeCCeEEEEeC
Q 005423 260 MMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 260 i~~~L~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
+++.|+++++ .|+|||++.|... .....++.......|+++.++.
T Consensus 264 ~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 264 HLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 7777788775 5899999777643 4444455666677777665544
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=1.2e-18 Score=201.10 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=116.7
Q ss_pred eEEEEeEEEEEecccccCcceeeee----------eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~-~~~~~G~I~i~ 173 (697)
.++++||+..+..+ .+++|+.+ ++.++. +||+|||||||||||++|+|+..| ++ |.|.++
T Consensus 10 ~i~~~~l~~~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~s---G~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGS---GIVTRC 80 (608)
T ss_dssp ----------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCC---CeEEEc
Confidence 46788888887532 12233322 244433 999999999999999999999866 44 999999
Q ss_pred CEeC--------CCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
|.++ ...++.++|++|+..+++.+||+|++.+....... ...++| ++++.++.+...+|+++++
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~-----~~~~~s---~~~i~l~i~~~~~p~LlLl 152 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG-----EGMGIS---HELITLEISSRDVPDLTLI 152 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC-----SSSCCC---SCCEEEEEEESSSCCEEEE
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC-----Cccccc---hHHHHHHhcCCCCCceeEe
Confidence 9763 12345789999999999999999999886432100 111222 2333444444568999999
Q ss_pred eCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEecCh------HHHHhc-----cCEEEEEeCCeEEEEeCc
Q 005423 246 DEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEVFGL-----FDRICLLSNGNTLFFGET 306 (697)
Q Consensus 246 DEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~tih~~~------~~i~~~-----~D~v~vL~~G~iv~~G~~ 306 (697)
||| |+|||+..+.++.++++++.++ +.++++++|... ..+.+. ...|+|+.++..+..|+.
T Consensus 153 DePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~ 232 (608)
T 3szr_A 153 DLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTE 232 (608)
T ss_dssp ECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSST
T ss_pred eCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccH
Confidence 999 9999999999999999997543 445555554432 111111 356889999998888877
Q ss_pred hhhHHhhh
Q 005423 307 LACLQHFS 314 (697)
Q Consensus 307 ~~~~~~f~ 314 (697)
+++.+.+.
T Consensus 233 ~~~~~~l~ 240 (608)
T 3szr_A 233 DKVVDVVR 240 (608)
T ss_dssp TCCCCCC-
T ss_pred HHHHHHHh
Confidence 66555443
No 105
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=2.9e-16 Score=185.72 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=88.8
Q ss_pred cCCCcc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHH
Q 005423 209 LQLPGF-FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 285 (697)
Q Consensus 209 l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i 285 (697)
+++... .++....|||||||||+||++|..+| ++|||||||+|||+.....++++|++|++.|.|||++.|+. . +
T Consensus 366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~ 443 (842)
T 2vf7_A 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-V 443 (842)
T ss_dssp TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-H
T ss_pred CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-H
Confidence 445432 56777899999999999999999999 59999999999999999999999999998899999977765 3 5
Q ss_pred HhccCEEEEE------eCCeEEEEeCchhhHH
Q 005423 286 FGLFDRICLL------SNGNTLFFGETLACLQ 311 (697)
Q Consensus 286 ~~~~D~v~vL------~~G~iv~~G~~~~~~~ 311 (697)
.+.||+|++| ++|++++.|+++++.+
T Consensus 444 l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 444 IRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 5789999999 7999999999988754
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=1.4e-18 Score=184.00 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=80.8
Q ss_pred eEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCccEEE
Q 005423 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYGF 186 (697)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~y 186 (697)
||++.+. .+.+++++++.+ +|+|+||+|||||++.|+|. ..+.. | |.++|.+... ....+++
T Consensus 3 ~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 3 NLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEEE
Confidence 5666652 457999999998 99999999999999999997 66554 7 8777765322 1245788
Q ss_pred EcCccccCCCCCHHHHHHHHHHcC----CCccc-------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-CCH
Q 005423 187 VERETTLIGSLTVREYLYYSALLQ----LPGFF-------CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYH-LDS 254 (697)
Q Consensus 187 v~Q~~~l~~~lTV~e~l~~~~~l~----l~~~~-------~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg-LD~ 254 (697)
++|++.....+|+.|+..++.... ..... ++..+++|||||||+.+||+++ +|++||||++ ||+
T Consensus 68 ~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 68 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp EEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred EecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 988877766778777766543211 01111 1455789999999999999885 9999999985 999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEEecC
Q 005423 255 VSALLMMVTLKKLAST-GCTLLFTINQS 281 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~-g~tvi~tih~~ 281 (697)
... +.++++.++ +.++|++.|+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 873 666776643 56666655553
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.64 E-value=2.2e-19 Score=177.46 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=101.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCccEEEEcCccccCCCCCHHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~ 212 (697)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.+||++|+. ... ++++. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVGLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccccc
Confidence 78999999999999999999999987 54 8 888886542 2346789999874 111 11110 01111
Q ss_pred -------ccccccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEE---
Q 005423 213 -------GFFCQRKNGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALLMMVTLKKLASTGCTLLF--- 276 (697)
Q Consensus 213 -------~~~~~~~~~LSGGqrqRv-~IA~---aL~~~P~iLlLDE--PTsgLD~~~~~~i~~~L~~l~~~g~tvi~--- 276 (697)
....++...+|+|||+++ ++++ |++.+|+|||+|| |+..+|..... .|+++.+...++|+
T Consensus 68 ~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~----~l~~~l~~~~~~ilgti 143 (189)
T 2i3b_A 68 PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ----AVRQTLSTPGTIILGTI 143 (189)
T ss_dssp CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH----HHHHHHHCSSCCEEEEC
T ss_pred CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH----HHHHHHhCCCcEEEEEe
Confidence 012233457999999998 4454 6899999999999 89889987544 44444444545553
Q ss_pred EEecChHHHHhccCEEEEEeCCeEEEEe
Q 005423 277 TINQSSTEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 277 tih~~~~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+++|..+ ..+.|+|..+.+|+++...
T Consensus 144 ~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 144 PVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred ecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 3324332 3567888888888987644
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=8e-17 Score=174.16 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=91.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+.... ....+++.|........+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~--------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE--------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---------
Confidence 567899999999999999999999999987642 26665544333322 123345556543333333322
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccC
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 290 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D 290 (697)
+||++|..+|++|++|||| |..+ .+.+.++++.|.+|++|+|..+ .+ +.+|
T Consensus 188 --------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~d 238 (356)
T 3jvv_A 188 --------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTID 238 (356)
T ss_dssp --------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHH
T ss_pred --------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHH
Confidence 9999999999999999999 6555 4444555778999999888875 34 7899
Q ss_pred EEEEEeCC
Q 005423 291 RICLLSNG 298 (697)
Q Consensus 291 ~v~vL~~G 298 (697)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99988654
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.62 E-value=1.2e-18 Score=173.59 Aligned_cols=129 Identities=21% Similarity=0.154 Sum_probs=100.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccC--CCCCHHHHHHHH----
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYS---- 206 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~e~l~~~---- 206 (697)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 358999999999999999999999998642 478888888766 456787765431
Q ss_pred ------------HHcCCCccccccCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q 005423 207 ------------ALLQLPGFFCQRKNGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LDSVSALLMMVT 263 (697)
Q Consensus 207 ------------~~l~l~~~~~~~~~~LSGGq----rqRv~IA~aL~~~P~iLlLDEPTsg-------LD~~~~~~i~~~ 263 (697)
..+++.+....+...+|+|| +||+++|++++.+|.++++||||++ ||+....++.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 11122233344556789996 4789999999999999999999999 999999999999
Q ss_pred HHHH-HHcCCEEEEEEecC
Q 005423 264 LKKL-ASTGCTLLFTINQS 281 (697)
Q Consensus 264 L~~l-~~~g~tvi~tih~~ 281 (697)
+++. .+.|.|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 9886 46688888777763
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=1.5e-15 Score=158.52 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=94.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-H------
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-Y------ 205 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~------ 205 (697)
+++|++++|+||||||||||++.|++.... |++. .|.+.. ....+.|+..++..- .+.+.+. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~~~g~~~~~ 96 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLHALGAHLSA 96 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHHHHHTTSCH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHHHHHhhcCh
Confidence 669999999999999999999999986542 5442 344321 124577776654321 1111111 1
Q ss_pred ------HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHH-HcCCE
Q 005423 206 ------SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLMMVTLKKLA-STGCT 273 (697)
Q Consensus 206 ------~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs--gLD~~~---~~~i~~~L~~l~-~~g~t 273 (697)
...+.+....++.+..||+||+|++ ++++.+|+++++||||+ ++|... ..++++.|++++ +.|+|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 1122233334456788999998875 68889999999999999 999744 488899999997 56999
Q ss_pred EEEEEecC
Q 005423 274 LLFTINQS 281 (697)
Q Consensus 274 vi~tih~~ 281 (697)
||+++|..
T Consensus 174 vi~i~H~~ 181 (279)
T 1nlf_A 174 IVFLHHAS 181 (279)
T ss_dssp EEEEEEC-
T ss_pred EEEEecCC
Confidence 99977765
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=9.4e-15 Score=145.55 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=98.0
Q ss_pred ceeeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.|+++. +-+++|++++|+||||||||||++.|++ +.+. +.++++..... ....+.-..+.. .....+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~---~v~~i~~~~~~-~~~~~~~~~~~~----~~~~~~~ 76 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGK---KVAYVDTEGGF-SPERLVQMAETR----GLNPEEA 76 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCS---EEEEEESSCCC-CHHHHHHHHHTT----TCCHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCC---cEEEEECCCCC-CHHHHHHHHHhc----CCChHHH
Confidence 4566665 4788999999999999999999999999 3321 44444432200 000000000000 0011110
Q ss_pred HHHHHHcCCCccccccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH-c
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYHLDSV--------SALLMMVTLKKLAS-T 270 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGq--rqRv~IA~aL~~~-P~iLlLDEPTsgLD~~--------~~~~i~~~L~~l~~-~ 270 (697)
+ ..+ .....++++ +++++.+++++.+ |+++++||||+.+|.. ...++++.|+++++ .
T Consensus 77 ~---~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 77 L---SRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp H---HHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred h---hcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000 122344553 6788889999986 9999999999999973 23556777888875 4
Q ss_pred CCEEEEEEecCh------------HHHHhccCEEEEEeCC
Q 005423 271 GCTLLFTINQSS------------TEVFGLFDRICLLSNG 298 (697)
Q Consensus 271 g~tvi~tih~~~------------~~i~~~~D~v~vL~~G 298 (697)
|.|||+++|... ..+.+.||.+++|++.
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 889998777643 1567899999999754
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=1.7e-15 Score=149.94 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=93.1
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEE------CC
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFV------NG 174 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-----~~~~~~~G~I~i------~G 174 (697)
++++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .+. .|++.+ ++
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~~~~ 72 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFEVAD 72 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEEecC
Confidence 68899999884 246777 788999999999999999999999999987 433 254432 11
Q ss_pred -EeC-CCC---------------CccEEEEcCc-----------cccCCCCCHH--HHHHHHHHcCCCcc-ccccCCCCC
Q 005423 175 -AKS-EMP---------------YGSYGFVERE-----------TTLIGSLTVR--EYLYYSALLQLPGF-FCQRKNGLP 223 (697)
Q Consensus 175 -~~~-~~~---------------~~~~~yv~Q~-----------~~l~~~lTV~--e~l~~~~~l~l~~~-~~~~~~~LS 223 (697)
... +.+ .+.++++.|. +.-.+ .+-. +........+++.. ...+...+|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 110 000 0001111110 00011 1211 11222223344433 245566799
Q ss_pred HHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 005423 224 CGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 273 (697)
Q Consensus 224 GGqrqR-v~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 273 (697)
+||||| +..+++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999 89999999999999999999999999999999999998866644
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.1e-14 Score=141.62 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 216 CQRKNGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 216 ~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
.+....||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.++ .++|+++|++ .+.+.||+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~ 135 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADK 135 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCE
Confidence 35567899999999999999975 46999999999999999999999999998754 5666667774 46789999
Q ss_pred EEEEe--CCe
Q 005423 292 ICLLS--NGN 299 (697)
Q Consensus 292 v~vL~--~G~ 299 (697)
++.+. +|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 98664 664
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=6.6e-17 Score=178.16 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=94.9
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccE
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (697)
.+.++||++.|. .+.+++++++.+ +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 478888887763 457999999998 99999999999999999998764321 1222222211 1112457
Q ss_pred EEEcCccccCCCCCHHHHHHHHHHcCCCccc----cccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHH
Q 005423 185 GFVERETTLIGSLTVREYLYYSALLQLPGFF----CQRKNGLPCGERRRVRIARELVMRPH---VLFIDEPL-YHLDSVS 256 (697)
Q Consensus 185 ~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~----~~~~~~LSGGqrqRv~IA~aL~~~P~---iLlLDEPT-sgLD~~~ 256 (697)
++++|++.++..+||.||+.+.......... ..-...++.+++||++|||+++.+|+ +|++|||| .+||+..
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 8899988887788888888765432100000 00012467788899999999999999 99999999 6999877
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 257 ALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 257 ~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
. +.++++.. +.++|+++|+-
T Consensus 158 ~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 158 I----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp H----HHHHHHTT-TSEEEEEEEST
T ss_pred H----HHHHHHhc-cCcEEEEEEcc
Confidence 3 44555554 67777777764
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.51 E-value=6.5e-18 Score=165.55 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=110.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC--C-
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL--P- 212 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l--~- 212 (697)
|++++|+||||||||||+++|++. . .|.+.++|.+.... ...++++|........++++++.+...... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999982 2 28899988653221 134566666544455688888876532210 0
Q ss_pred c-ccc--------ccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 005423 213 G-FFC--------QRKNGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 275 (697)
Q Consensus 213 ~-~~~--------~~~~~L--SGGqrqRv~IA~------aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi 275 (697)
. ..+ +..+.+ |+|++|++.++. +|+.+|+...+|| +||+..... .+.++.+.+.+.++|
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 0 010 011234 888888888888 9999999888884 899988888 888888876678888
Q ss_pred EEEecChHHHHhccCEEEEEeCCeEEEEeCchhh
Q 005423 276 FTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 309 (697)
Q Consensus 276 ~tih~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 309 (697)
.++|...+++.++||+|+ ++|+++..|+++-+
T Consensus 151 ~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 151 NTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred eCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 877762357888999999 99999999987653
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.50 E-value=3.2e-15 Score=162.11 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=100.8
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCccEEEEc-CccccCCCCCHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (697)
+++++++.+++|++++|+||||||||||+++|+|++++.. |.|.++|... .. .++.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999865 9999998532 11 235688988 65432
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
+++++..+|..|+.+|..+|+.+++||++. .++.+.|+.+.....|++.++|.
T Consensus 234 --------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 234 --------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHA 286 (361)
T ss_dssp -------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEEC
T ss_pred --------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECC
Confidence 112334566677777888999999999986 34566777776555677888888
Q ss_pred ChHHHHhccCEEEEEeCCe
Q 005423 281 SSTEVFGLFDRICLLSNGN 299 (697)
Q Consensus 281 ~~~~i~~~~D~v~vL~~G~ 299 (697)
.+ ....+||+..|..|.
T Consensus 287 ~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS--CELTFERLALMVLQN 303 (361)
T ss_dssp SS--HHHHHHHHHHHHTTS
T ss_pred CC--HHHHHHHHHHHHhcc
Confidence 64 567889988887653
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=1.4e-15 Score=153.66 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=101.1
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCH----HHHHHHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTV----REYLYYS 206 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~e~l~~~ 206 (697)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+++++... ....++|++|++..|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45689999999999999999999999998863 356999998875432 23468999998776655554 2332211
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 286 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~ 286 (697)
.. ..+.| +++ +++++..++++||| ||+.++.++.+.+. ++.||++++|+. .++.
T Consensus 91 ------~~----~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~-~~l~ 144 (219)
T 1s96_A 91 ------GN----YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSK-IELD 144 (219)
T ss_dssp ------TE----EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSH-HHHH
T ss_pred ------hc----cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCH-HHHH
Confidence 00 01112 222 45677789999999 99999999999876 588898877765 3443
Q ss_pred hccCEEEEEeCCeEEEEeCchhhHHhhh
Q 005423 287 GLFDRICLLSNGNTLFFGETLACLQHFS 314 (697)
Q Consensus 287 ~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 314 (697)
+ |+ +.+| .++++++...+.
T Consensus 145 ~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 145 R---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp H---HH--HTTS----CSCHHHHHHHHH
T ss_pred H---HH--HHcC----CCCHHHHHHHHH
Confidence 3 43 6677 466777665554
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.48 E-value=3.9e-15 Score=162.01 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=95.2
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCccEEEEcCccccCCCCCHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
.+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+... .+..+++|+|...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEEB----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeeec----------
Confidence 3566665 78999999999999999999999999987641 3999777655432 2345778888521
Q ss_pred HHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 203 LYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 203 l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
++ .+..+ +.+|+++|..+|++|++|||+ |..+... .++. +..|.+|+.|+|...
T Consensus 192 -------g~------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 192 -------GE------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT 245 (372)
T ss_dssp -------TT------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS
T ss_pred -------CC------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch
Confidence 11 11233 469999999999999999999 7766443 3443 356889988777653
Q ss_pred HHHHhccCEEEEEe
Q 005423 283 TEVFGLFDRICLLS 296 (697)
Q Consensus 283 ~~i~~~~D~v~vL~ 296 (697)
+.+.+||++.|.
T Consensus 246 --~~~~~~rl~~l~ 257 (372)
T 2ewv_A 246 --AIDTIHRIVDIF 257 (372)
T ss_dssp --HHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhc
Confidence 667888877663
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.48 E-value=1.6e-15 Score=148.27 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=91.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCccEEEEcCccccCCCCCHHHHHHHHHHc
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l 209 (697)
+++|++++|+||||||||||+++|+|+ ++. |.|.++|.+.. .....++|++|+.. +..+|.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~---g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGV---PKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSS---CEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCC---CeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 333 99999986531 11234577777654 356899998764321
Q ss_pred ----C----CCc---------cc--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 005423 210 ----Q----LPG---------FF--CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 270 (697)
Q Consensus 210 ----~----l~~---------~~--~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 270 (697)
+ +.. .. ......+|+|++||+.++|++..+|+++ +|+.....+.+.++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0 010 00 1223569999999999999999999887 6888777777777665433
Q ss_pred CCEEEE
Q 005423 271 GCTLLF 276 (697)
Q Consensus 271 g~tvi~ 276 (697)
+..+|.
T Consensus 151 ~~~~i~ 156 (191)
T 1zp6_A 151 EHHVLP 156 (191)
T ss_dssp GGGEEE
T ss_pred cccEEE
Confidence 333443
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=1.2e-16 Score=173.51 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=105.5
Q ss_pred eeeeeeeEEcC--CcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEEC----CEeCCCCC---ccEEEEcCccccC
Q 005423 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVN----GAKSEMPY---GSYGFVERETTLI 194 (697)
Q Consensus 125 iL~~vs~~v~~--Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~-~~~G~I~i~----G~~~~~~~---~~~~yv~Q~~~l~ 194 (697)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++.. ...|+|.++ |.+..... ..+++++|+..++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 45679999999 99999999999999999999999988741 011666653 32221111 2355555543322
Q ss_pred CCCCHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV-MRPHVLFIDE---PL------YHLDSVSALLMMVTL 264 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~-~~P~iLlLDE---PT------sgLD~~~~~~i~~~L 264 (697)
..|+.||+.+. . .+........+|+|++||..+++++. .+|++++||| |+ .++|...+..+.+.|
T Consensus 237 -~~t~~~nl~~~---~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 237 -AVRHSHKIAFI---D-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp -HHHHCSSEEEE---S-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred -HHhccCCEEEE---e-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 12333333211 0 11111223356778888888888875 5999999999 65 589999999999999
Q ss_pred HHHHH-cCCEEEEEEecChHHHHhccCEEEEEe
Q 005423 265 KKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 296 (697)
Q Consensus 265 ~~l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~ 296 (697)
+++.+ .|.+++++.| +. +..+++|++.+++
T Consensus 312 ~~l~~~~~~~ililde-~~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIES-PS-YLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHGGGCCCEEEEC-SS-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCC-CC-HHHHHHHHHHHHH
Confidence 99864 4788888654 43 4556676665553
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=8.5e-13 Score=133.38 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=88.1
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHS--ARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~--~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+-+++|++++|+||||||||||++.|++ ..++. ....|.+++++...... .+.+++.+|+ +.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~ 90 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VL 90 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hh
Confidence 5678999999999999999999999999 45441 00137788876542100 0112222111 11
Q ss_pred HHHHHHHHcCCCccccccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHH
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV-------S-----ALLMMVTLK 265 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSGGqrqR-v~IA~aL~--~~P~iLlLDEPTsgLD~~-------~-----~~~i~~~L~ 265 (697)
+++ ......++.+... +.-+.+++ .+|+++++|||++.+|+. . ..++++.|+
T Consensus 91 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~ 157 (243)
T 1n0w_A 91 DNV-------------AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLL 157 (243)
T ss_dssp HTE-------------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHH
T ss_pred hCe-------------EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 111 0112345555433 33344444 489999999999999975 3 345667777
Q ss_pred HHHH-cCCEEEEEEecChHH------------------HHhccCEEEEEeCCe
Q 005423 266 KLAS-TGCTLLFTINQSSTE------------------VFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~-~g~tvi~tih~~~~~------------------i~~~~D~v~vL~~G~ 299 (697)
++++ .|.|||+++|..... +..+||.+++|++|+
T Consensus 158 ~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 158 RLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp HHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred HHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 7764 489999976643211 223899999998653
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=3.7e-13 Score=127.62 Aligned_cols=96 Identities=19% Similarity=0.350 Sum_probs=72.6
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCccEEEEcCccccCCCCCHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
.+|+++ +|+.++|+||||+|||||+++|+|..++. | .+.+++.+.. . .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~~~~---------------~-~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAASMP---------------L-T----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETTTSC---------------C-C-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHHHhh---------------H-H-----
Confidence 355555 89999999999999999999999987652 5 4554442211 0 0
Q ss_pred HHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEEec
Q 005423 202 YLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLFTINQ 280 (697)
Q Consensus 202 ~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t-vi~tih~ 280 (697)
+++.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.
T Consensus 79 ---------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6655588999999999888887 8887776
Q ss_pred ChH
Q 005423 281 SST 283 (697)
Q Consensus 281 ~~~ 283 (697)
+..
T Consensus 125 ~p~ 127 (149)
T 2kjq_A 125 TPQ 127 (149)
T ss_dssp CTT
T ss_pred CHH
Confidence 543
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=8.6e-14 Score=135.14 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=77.7
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
+.+.+|+.++|.||||+|||||+++|++...+.. |.. +.| .++.+.+......
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~~-------------~~~----------~~~~~~~~~~~~~- 85 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GIR-------------GYF----------FDTKDLIFRLKHL- 85 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CCC-------------CCE----------EEHHHHHHHHHHH-
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CCe-------------EEE----------EEHHHHHHHHHHH-
Confidence 3456799999999999999999999999875322 310 111 2333333221100
Q ss_pred CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 211 LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 211 l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
.... ... -....+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|+++|++..+
T Consensus 86 ----~~~~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 86 ----MDEG--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp ----HHHT--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred ----hcCc--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 0000 000 1223456999999999996 9999999999999999888899999999987644
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=2e-13 Score=152.05 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=113.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCccEEEEcCccccC
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (697)
-+++|+.+++|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999988765 999998765421 124589999998888
Q ss_pred CCCCHHHHHHHHHHcCCCccc-ccc-----CCCCCHHHHHHHHHHHHHh-hCC-CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 195 GSLTVREYLYYSALLQLPGFF-CQR-----KNGLPCGERRRVRIARELV-MRP-HVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 195 ~~lTV~e~l~~~~~l~l~~~~-~~~-----~~~LSGGqrqRv~IA~aL~-~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+.++|++++.+...-+..-.+ +.. ...+-..-+|++.+++++. ..| .+||..++|+|.|.. +.++.
T Consensus 360 p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~ 433 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKL 433 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHH
Confidence 888999999987542211000 000 0112223357888888763 457 466666688886554 34555
Q ss_pred HHH-cCCEEEEEEecChHHHHhccCEEEEEe--CCeEEEEeCchhh
Q 005423 267 LAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLAC 309 (697)
Q Consensus 267 l~~-~g~tvi~tih~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~~ 309 (697)
+.+ -|.|.++.+|-+. .....+.+-++. +..|.|.|..+.+
T Consensus 434 f~~~~~itgvIlTKLD~--takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 434 FHEAVGLTGITLTKLDG--TAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHHTCCSEEEEECGGG--CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHhhcCCCEEEEEcCCC--cccccHHHHHHHHHCCCEEEEecCCCh
Confidence 553 4777777777543 222233222332 3456666665554
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.35 E-value=8e-16 Score=157.42 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHH--
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSAL-- 208 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~-- 208 (697)
++++++|+||||||||||+++|+ |+..++. |+|.++|.+.... ...+.+++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~---G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS---GHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH---HHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecH---HHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9987653 8887776532111 1223445666667777788888765321
Q ss_pred ------c-CCCc------------------------------cccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe----
Q 005423 209 ------L-QLPG------------------------------FFCQRKNGLPCGERRRVRIAREL-VMRPHVLFID---- 246 (697)
Q Consensus 209 ------l-~l~~------------------------------~~~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLD---- 246 (697)
+ +.+. ...+....||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 0110 00122345777 55 667 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC
Q 005423 247 EPLYHLDSVSALLMMVTLKKLASTG 271 (697)
Q Consensus 247 EPTsgLD~~~~~~i~~~L~~l~~~g 271 (697)
|||++||..+...+.+.|+++.+++
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987654
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=4.2e-15 Score=144.44 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=81.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C-------C-ccEE----EEcCccccCCCCCHHH--
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P-------Y-GSYG----FVERETTLIGSLTVRE-- 201 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~-------~-~~~~----yv~Q~~~l~~~lTV~e-- 201 (697)
++++|+|+||||||||+++|+|++++.+...|.|.++|.+... . + +.++ ++.|+..++-.-.-.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 5799999999999999999999988753345999999976321 1 1 2456 7888876651100011
Q ss_pred -HH-HHHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHH
Q 005423 202 -YL-YYSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVL-------FIDEPLYH---LDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 202 -~l-~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iL-------lLDEPTsg---LD~~~~~~i~~~L~~l~~ 269 (697)
.+ .+... .+++.-..-..+||||||||++|||+++.+|++. .-|.|..+ +|......+.+.+.+...
T Consensus 83 a~l~~~i~~-~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 83 NDLDWIYER-YLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp TCHHHHHHH-HTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred hCHHHHHHh-hCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 11 11111 0332211222359999999999999999999873 33555322 344456777777766666
Q ss_pred cCC
Q 005423 270 TGC 272 (697)
Q Consensus 270 ~g~ 272 (697)
+|.
T Consensus 162 ~~~ 164 (171)
T 2f1r_A 162 EGG 164 (171)
T ss_dssp C--
T ss_pred ccC
Confidence 654
No 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.33 E-value=1.1e-12 Score=140.16 Aligned_cols=138 Identities=9% Similarity=-0.035 Sum_probs=97.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CccEEEEcCccccCCCCCHHHH
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... ...+.+++|+..+.|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999988765 9999999875321 1135699999999999999999
Q ss_pred HHHHHHcCCCcc-ccccCC-C-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEE
Q 005423 203 LYYSALLQLPGF-FCQRKN-G-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 278 (697)
Q Consensus 203 l~~~~~l~l~~~-~~~~~~-~-LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~ti 278 (697)
+.++...+.... .+.... . -..=.++.-.|++++..++.+++||.+|. .++++.++.+. +.+.|+|+++
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEe
Confidence 988754221110 111100 0 01112233348899988888888885553 45666777776 4588888888
Q ss_pred ecC
Q 005423 279 NQS 281 (697)
Q Consensus 279 h~~ 281 (697)
|.+
T Consensus 277 KlD 279 (328)
T 3e70_C 277 KLD 279 (328)
T ss_dssp CGG
T ss_pred CcC
Confidence 866
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.33 E-value=3.8e-14 Score=135.86 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=64.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
+.+++++|+++++|++++|+||||||||||+|+|+|++ |.. |+|.++|.+.........+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 46899999999999999999999999999999999998 654 999999975421111012789998888 8999999
Q ss_pred HHH
Q 005423 203 LYY 205 (697)
Q Consensus 203 l~~ 205 (697)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 129
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.30 E-value=3.9e-12 Score=140.88 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE
Q 005423 220 NGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 295 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL 295 (697)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|+++|++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876678899988874 567889999999
Q ss_pred e
Q 005423 296 S 296 (697)
Q Consensus 296 ~ 296 (697)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 130
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.29 E-value=8e-15 Score=156.24 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=90.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCC--------------------CccEEEE-
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMP--------------------YGSYGFV- 187 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~--------~~~~~~~G~I~i~G~~~~~~--------------------~~~~~yv- 187 (697)
++++|+|+||||||||+|.|+|.. .++ .|+|.++|.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 344 39999998764321 1235666
Q ss_pred --cCccccCCCCCHHHHHHHH----------------HHcCCCcc--------ccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 188 --ERETTLIGSLTVREYLYYS----------------ALLQLPGF--------FCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 188 --~Q~~~l~~~lTV~e~l~~~----------------~~l~l~~~--------~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
+|+..+++..+|.|+..++ ...++... ..+...++|+||+||+..+++++.+|+
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcc
Confidence 4665544455555544221 00111100 001113689999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
++ ||| .++.+.|++++ .+.+|++++|.+.
T Consensus 162 l~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred cC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 88 998 77888888875 5789999888754
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.29 E-value=3.8e-12 Score=138.36 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCE
Q 005423 219 KNGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 291 (697)
Q Consensus 219 ~~~LSGGqrqRv------~IA~aL~~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~ 291 (697)
...||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++...||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCE
Confidence 357999999988 567899999 999999999999999999999999999753 46888888886 36789999
Q ss_pred EEEEe
Q 005423 292 ICLLS 296 (697)
Q Consensus 292 v~vL~ 296 (697)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 132
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=1.3e-13 Score=151.50 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=96.6
Q ss_pred eeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 126 VKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 126 L~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
|++||+.+++|++ +||+||||||||||+|+|+|+.-. |.-. .........+.++|++|++.+++.+||.||+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~-~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPA-THTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcC-CCCCccceEeeEEEEeecCccccccchhhhh
Confidence 9999999999999 999999999999999999998421 2211 1101111124689999987766556655544
Q ss_pred HHHH------------------------Hc-CCC----ccccc-----------cCCCCCHHHHHHHHHHHHHhhCCCEE
Q 005423 204 YYSA------------------------LL-QLP----GFFCQ-----------RKNGLPCGERRRVRIARELVMRPHVL 243 (697)
Q Consensus 204 ~~~~------------------------~l-~l~----~~~~~-----------~~~~LSGGqrqRv~IA~aL~~~P~iL 243 (697)
.++. .. +.. ...+. ..++|+-.+ +.|+++|..+++|+
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 2210 00 111 00111 114677666 78999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEe
Q 005423 244 FIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTIN 279 (697)
Q Consensus 244 lLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~tih 279 (697)
++|||+..|.+.....+.+.+++ +...|..|+.+..
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 99999999999999999999986 8888888887543
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.25 E-value=2.9e-12 Score=138.08 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=81.3
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCccEEEEcCccccCCCCCHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~e 201 (697)
-+++++.. .+|++++|+||||||||||+|+|+|..+ +.. |+|.++ |.... .....+++++|+..++++.+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35555553 4899999999999999999999999988 764 999987 65432 23457899999988887777765
Q ss_pred HHH--------------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005423 202 YLY--------------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 267 (697)
Q Consensus 202 ~l~--------------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 267 (697)
+.. +...+++....+....++| ||+||++||+++ ++..-.....++++++
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESM 344 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHH
Confidence 311 0112234444556678999 999999999864 3444444555666665
Q ss_pred HH
Q 005423 268 AS 269 (697)
Q Consensus 268 ~~ 269 (697)
.+
T Consensus 345 ~~ 346 (358)
T 2rcn_A 345 AQ 346 (358)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 134
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=2.9e-11 Score=132.53 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=91.3
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCC------CccEEEEcCccccCCCCCHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVR 200 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~--L~G~~~~~~--~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~ 200 (697)
+-+++|++++|+||||||||||++. +.+..++.. .-.+.|++++...... .+.+++.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 5688999999999999999999994 456666521 1125777777542110 011122111 222
Q ss_pred HHHHHHHHcCCCccccccCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHH
Q 005423 201 EYLYYSALLQLPGFFCQRKNGLPC-GERRRVRIARELV--MRPHVLFIDEPLYHLDSVSA------------LLMMVTLK 265 (697)
Q Consensus 201 e~l~~~~~l~l~~~~~~~~~~LSG-GqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~~------------~~i~~~L~ 265 (697)
+|+.+ ....++ .+.+.+..+.+++ .+|+++++||||+.+|.... .++++.|+
T Consensus 245 eni~~-------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~ 311 (400)
T 3lda_A 245 NNVAY-------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQ 311 (400)
T ss_dssp HTEEE-------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHH
T ss_pred hcEEE-------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHH
Confidence 22111 011222 2334444444443 46999999999999996533 67888999
Q ss_pred HHHH-cCCEEEEEEecCh------------------HHHHhccCEEEEEeCCe
Q 005423 266 KLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLSNGN 299 (697)
Q Consensus 266 ~l~~-~g~tvi~tih~~~------------------~~i~~~~D~v~vL~~G~ 299 (697)
++++ .|.|||+++|... ..+.+.+|.++.|++|+
T Consensus 312 ~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 312 RLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 9985 4999999888711 23467799999998764
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=8.2e-14 Score=149.60 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=107.9
Q ss_pred EEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 005423 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (697)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (697)
++.+|+++.+. .+.+|+++++.+++|++++|+|+||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 44455554432 2468999999999999999999999999999999999988765 999999876421
Q ss_pred ---CCccEEEEcCccccCCCC------------CHHHHHHHHH-----------------------HcC-----------
Q 005423 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSA-----------------------LLQ----------- 210 (697)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~e~l~~~~-----------------------~l~----------- 210 (697)
.+..+++++|++.++... ++.|.+.... ...
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 234678899987776431 1222221000 000
Q ss_pred -----C-------Ccc--ccc----cCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 211 -----L-------PGF--FCQ----RKNGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 211 -----l-------~~~--~~~----~~~~LSGGqrqRv~IA~aL~~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+ +.. .++ ....+|+|++|++..|++++. +|++++ ||++|.....++++.|.+
T Consensus 182 ~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 182 DELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -----CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred ccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0 000 011 113478999999999999987 688887 999999999999999988
Q ss_pred HHH
Q 005423 267 LAS 269 (697)
Q Consensus 267 l~~ 269 (697)
+..
T Consensus 258 ~~~ 260 (337)
T 2qm8_A 258 HRS 260 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=3.6e-12 Score=140.31 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCccEEEEcCccccCC--
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIG-- 195 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~-- 195 (697)
-+++++.++.|+.++|+|+|||||||||++|+|..+.- ....|.|.+++. . --.+.+.+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------~-~~~l~DtpGli~~a 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------E-RFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------C-EEEEEECCCCCCCG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------c-eEEEEeccccccch
Confidence 47899999999999999999999999999999984310 012345544430 0 011222222211
Q ss_pred ----CCCHHHHHHHHHHcCCCcc-----c-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005423 196 ----SLTVREYLYYSALLQLPGF-----F-CQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 265 (697)
Q Consensus 196 ----~lTV~e~l~~~~~l~l~~~-----~-~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~ 265 (697)
.+. .+.+. ..-+.... . .+....||+||+||+++|++|+.+|.||++ +++|...+ ..++.++
T Consensus 220 ~~~~~L~-~~fl~--~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~ 291 (416)
T 1udx_A 220 SEGKGLG-LEFLR--HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALA 291 (416)
T ss_dssp GGSCCSC-HHHHH--HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHH
T ss_pred hhhhhhh-HHHHH--HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHH
Confidence 111 11111 11011100 1 234467999999999999999999999999 99998776 4455554
Q ss_pred HH-HHcCCEEEEEEecChHHHHhccCEE
Q 005423 266 KL-ASTGCTLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 266 ~l-~~~g~tvi~tih~~~~~i~~~~D~v 292 (697)
+. .+.|.+++.++.+....+.++++.+
T Consensus 292 ~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 292 DALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 44 4557777776655444455555443
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.1e-11 Score=132.62 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCC---CccEEEEcCccccCCCCC---------HHHHHHH
Q 005423 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMP---YGSYGFVERETTLIGSLT---------VREYLYY 205 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~~---~~~~~yv~Q~~~l~~~lT---------V~e~l~~ 205 (697)
+.|.||||+|||||+++|+| +..++. |++.++|.+...+ ...+++++|.+.+.-..+ +++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKE 115 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC----CCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHH
Confidence 89999999999999999999 666654 9999988653321 245677777654321111 2222221
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
.. .... ..... .+|| +..+|+|+|+|||++ ||..++..+++.|.+.. .++++|+++|++..
T Consensus 116 ~~--~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 116 VA--QMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp HT--TTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred HH--Hhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 11 1000 00000 3455 788999999999999 99999999999998864 46788888888753
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.18 E-value=6.5e-13 Score=139.68 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH----HcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA----LLQ 210 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~----~l~ 210 (697)
++.+++|.|+||||||||++.|++++++. | . ..+.+.+|.|++.+++. ++++|+.+.. .+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999987642 2 0 02345566899888754 7788876541 000
Q ss_pred ---CC----------------cc----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005423 211 ---LP----------------GF----------FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 256 (697)
Q Consensus 211 ---l~----------------~~----------~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~ 256 (697)
.| .. .....+.+||||+||+++|++...+|+|||+||||+++|+..
T Consensus 95 ~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 01 11 123347899999999999733322999999999999999853
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.16 E-value=4.1e-14 Score=141.08 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=67.9
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
.++|++++|+||||||||||+++|+|++++.+...|.|.++|...... ....+...... +...........+...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~ 97 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKG-APETFDFEGFQRLCHALKH 97 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTT-SGGGBCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCC-CCchhhHHHHHHHHHHHhc
Confidence 358999999999999999999999999875322348888877543110 00111111000 0001111111111111111
Q ss_pred Ccc----ccccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 005423 212 PGF----FCQRKNGLPCGERRRVRIA-RELVMRPHVLFIDEPL 249 (697)
Q Consensus 212 ~~~----~~~~~~~LSGGqrqRv~IA-~aL~~~P~iLlLDEPT 249 (697)
.+. ......++|+||+||+++| ++++.++.++++|||.
T Consensus 98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 110 1133456899999999998 8888888888888884
No 140
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=2.3e-13 Score=148.54 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=114.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeC------CCCCccE---EEEcCcccc
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKS------EMPYGSY---GFVERETTL 193 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~------~---~~~~~G~I~i~G~~~------~~~~~~~---~yv~Q~~~l 193 (697)
.+++|+.++|+|+||+|||||+|+|+|... | -....|.|.++|... ..+.+.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 345899999999999999999999999321 0 012359999988421 1122222 466777887
Q ss_pred CCCCCHHHHH--HHHHHcCCCcc--------ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHH
Q 005423 194 IGSLTVREYL--YYSALLQLPGF--------FCQRKNGLPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMM 261 (697)
Q Consensus 194 ~~~lTV~e~l--~~~~~l~l~~~--------~~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~~~~~i~ 261 (697)
....+..|++ .|...++-.+. .+.....++|+. +| +++++|||+.++|+......+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~ 163 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHL 163 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHH
Confidence 7777766655 44433332111 112233456653 89 999999999999999999999
Q ss_pred HHHHHH-HHcCCEEEEEEecChHHHHhccCEEE-EEeCC-eEEEEeCch
Q 005423 262 VTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 307 (697)
Q Consensus 262 ~~L~~l-~~~g~tvi~tih~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 307 (697)
+.++++ ++.|.|++ +|. ...+.++||++. +|.+| ++++.|+.+
T Consensus 164 ~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 164 EGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999998 77777754 454 568889999999 99999 988877654
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.09 E-value=8.5e-14 Score=157.23 Aligned_cols=151 Identities=16% Similarity=0.088 Sum_probs=97.8
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CccEEEEcCcc---------
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERET--------- 191 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~--------- 191 (697)
..+++++++.+++|+.++|+|||||||||||++|+|+++++. |.|.++|.. .... ...++++.|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998875 999998864 2211 22344444321
Q ss_pred -------------ccCCCCCHHHHHHHHHHcCCC---------------------------cc----cc---ccCCCCCH
Q 005423 192 -------------TLIGSLTVREYLYYSALLQLP---------------------------GF----FC---QRKNGLPC 224 (697)
Q Consensus 192 -------------~l~~~lTV~e~l~~~~~l~l~---------------------------~~----~~---~~~~~LSG 224 (697)
.+++.++..|++.+...+... .. .+ .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 233456666765443221100 00 00 12235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EEecChHHHHhcc
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 289 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--tih~~~~~i~~~~ 289 (697)
|||||+++|. + | |+|||+.....+++.|.++.++|.|+++ ++|. ..++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH-HHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH-HHHHHHHc
Confidence 9998877641 2 7 9999987766666666666555667663 3443 33444444
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.07 E-value=1.9e-12 Score=137.24 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=95.7
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEE-------------------cCCcEEEEECCCCCcHHHHHHHHHcCCC--CC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~aIiG~sGsGKSTLl~~L~G~~~--~~ 163 (697)
.++++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|+++ |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 467788876652 5888898887 8999999999999999999999999876 65
Q ss_pred CCceeEEEE---CCEeCCC-CCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc-ccccCCCCCHHHHHHHHHHHHHhh
Q 005423 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNGLPCGERRRVRIARELVM 238 (697)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~-~~~~~~~LSGGqrqRv~IA~aL~~ 238 (697)
+ |+|.+ +|..... ..+.++++ |+..+++.+++.+++.+...+.-... ...+....+.+ +|+..+.+.+.
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~--~~~~~~~~~~~ 183 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIY--DVIPDGDKTVV 183 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTT--EECTTCCEEEC
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceeccccccccc--CcccccceecC
Confidence 4 99999 8865321 12346788 77777788999999988765533221 11111111222 33333334456
Q ss_pred CCCEEEEeCCCCCCCH
Q 005423 239 RPHVLFIDEPLYHLDS 254 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~ 254 (697)
+|+++|+|.|....|.
T Consensus 184 ~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 184 QPDILILEGLNVLQSG 199 (308)
T ss_dssp -CCEEEEECTTTTCCG
T ss_pred CCCEEEECchhhCCCc
Confidence 7899999999988774
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.05 E-value=9.8e-13 Score=144.96 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=80.5
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CccEEEEc-------
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------- 188 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------- 188 (697)
+|+++ + .++|++++|+|||||||||||++|+|.+++.. |+|.+.|.++... ...+++.+
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 56666 3 37899999999999999999999999988764 9999988765321 12344443
Q ss_pred --Ccccc--CCC----CCHHHHHHHHHHcCC-------Ccc---c----------cccCCCCCHHHHHHHHHHHHHhhCC
Q 005423 189 --RETTL--IGS----LTVREYLYYSALLQL-------PGF---F----------CQRKNGLPCGERRRVRIARELVMRP 240 (697)
Q Consensus 189 --Q~~~l--~~~----lTV~e~l~~~~~l~l-------~~~---~----------~~~~~~LSGGqrqRv~IA~aL~~~P 240 (697)
|++.. ++. .|+.+++.++..-++ ... . ......|||||+|| |||+|+.+|
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p 310 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDC 310 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTT
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCC
Confidence 77654 343 588888876532110 000 0 01225699999999 999999999
Q ss_pred CEEEE
Q 005423 241 HVLFI 245 (697)
Q Consensus 241 ~iLlL 245 (697)
++..-
T Consensus 311 ~~~~~ 315 (418)
T 1p9r_A 311 KEPYE 315 (418)
T ss_dssp CEEEE
T ss_pred CccCC
Confidence 99763
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.6e-11 Score=124.14 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=89.2
Q ss_pred ceeeee-eeEEcCCcEEEEECCCCCcHHHHHHHH-HcCCCCCCCceeEEEECCEeCCC----CCccEEEEcCccccCCCC
Q 005423 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSL 197 (697)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIiG~sGsGKSTLl~~L-~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 197 (697)
+.|+.+ .+-+++|++++|.||||||||||+..+ .+..+.+. +.+++++..... ....+++.+|+......+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l 86 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMF 86 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcE
Confidence 456666 677889999999999999999996544 44444332 455555432100 001123322211000001
Q ss_pred CHHHHHHHHHHcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCC
Q 005423 198 TVREYLYYSALLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGC 272 (697)
Q Consensus 198 TV~e~l~~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~ 272 (697)
++.+. +...++...........-+....+....++.++ .+|+++++|||++.+ |.....+++..|.+++ +.|.
T Consensus 87 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 164 (247)
T 2dr3_A 87 AMVDA--FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC 164 (247)
T ss_dssp EEEEC--STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred EEEec--chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC
Confidence 10000 000000000000000000112223333344444 589999999999988 6555566666666665 6689
Q ss_pred EEEEEEecChHH-------HHhccCEEEEEeC
Q 005423 273 TLLFTINQSSTE-------VFGLFDRICLLSN 297 (697)
Q Consensus 273 tvi~tih~~~~~-------i~~~~D~v~vL~~ 297 (697)
|||+++|..... +.+.+|.++.|+.
T Consensus 165 ~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 165 TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 999987765431 4578899999964
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.03 E-value=9e-14 Score=145.04 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=88.5
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCcc-ccCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERET-TLIGS 196 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 196 (697)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|+. ...+.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998754 7899998654221 12355666553 23333
Q ss_pred CCHHHHHHHHHHc-------CCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC------------CCCHHHH
Q 005423 197 LTVREYLYYSALL-------QLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY------------HLDSVSA 257 (697)
Q Consensus 197 lTV~e~l~~~~~l-------~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs------------gLD~~~~ 257 (697)
+++.|++...... ......++....|||||+||+.|++++..+|++| |||+. -.|...+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHH
Confidence 3333333221000 0111122334579999999999999999999986 98864 2355566
Q ss_pred HHHHHH
Q 005423 258 LLMMVT 263 (697)
Q Consensus 258 ~~i~~~ 263 (697)
.+|++.
T Consensus 184 ~~il~~ 189 (274)
T 2x8a_A 184 LAILKT 189 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.95 E-value=3.1e-10 Score=120.08 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=79.4
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH-HHH
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY-YSA 207 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~-~~~ 207 (697)
+++..++|++++|+|+|||||||+++.|++.+++.+ |+|.+.+.+.... ...|.+. +..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~-----------------~a~eqL~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRA-----------------AAIEQLKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCH-----------------HHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccH-----------------HHHHHHHHHHH
Confidence 344456899999999999999999999999987654 7888876543110 1123332 233
Q ss_pred HcCCCccccccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005423 208 LLQLPGFFCQRKNGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 208 ~l~l~~~~~~~~~~LSGGqrqRv---~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 268 (697)
..+++. ....|||+.+++ +|++++..+|+++|+|||.. ......+++.|+++.
T Consensus 157 ~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 157 RVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 334432 235689999999 99999999999999999974 344556666666654
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.95 E-value=5.8e-13 Score=131.98 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEEeC
Q 005423 232 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 297 (697)
Q Consensus 232 IA~-aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL~~ 297 (697)
+++ +++.+|++++|||+|+++|..+...|.+.|.++.++ . ...|.+ ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~---~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-M---ESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-T---TGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-H---HHhhcc-----CCceEEEECCC
Confidence 455 677888888899999999999999999999887653 1 112311 56999888763
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.94 E-value=1.4e-09 Score=114.44 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=83.5
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~ 206 (697)
+++++. +|++++|+|+||+||||+++.|+|.+++.+ |+|.+.+.+...+. .+.| + + .+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~~----~~~q---l-------~--~~~ 149 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRPA----AREQ---L-------R--LLG 149 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCHH----HHHH---H-------H--HHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccHh----HHHH---H-------H--Hhc
Confidence 677877 899999999999999999999999987654 88888776532110 0000 0 0 111
Q ss_pred HHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 005423 207 ALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALLMMVTLKKLA 268 (697)
Q Consensus 207 ~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~~~~~i~~~L~~l~ 268 (697)
...+++-... ..+-.-.+.+|.+|+++...+++++|+||| +.++|.....++.+..+.+.
T Consensus 150 ~~~~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 150 EKVGVPVLEV--MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp HHHTCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ccCCeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 2233332211 012344567899999998899999999999 99999988888877776653
No 149
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.93 E-value=6.5e-11 Score=136.64 Aligned_cols=142 Identities=20% Similarity=0.156 Sum_probs=97.2
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc---------
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (697)
...+++++++.+++|+.++|+||||+|||||+++|+|..++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3468899999999999999999999999999999999987642 38888888765444445778765431
Q ss_pred -------------cCCCCCHHHHHH------------------HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCC
Q 005423 193 -------------LIGSLTVREYLY------------------YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPH 241 (697)
Q Consensus 193 -------------l~~~lTV~e~l~------------------~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~ 241 (697)
.+..+++.+|+. +....+.-........++|+|++|++..++....++.
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~g 203 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKG 203 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTS
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCC
Confidence 111111111110 0000000000111226799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 242 VLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 242 iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
+||+||... |++..+..+++.|++
T Consensus 204 vL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 204 VLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred EEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999988 899888888777764
No 150
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.93 E-value=1.2e-09 Score=117.68 Aligned_cols=147 Identities=22% Similarity=0.195 Sum_probs=85.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
-+++|+++.|.||+|||||||+..++......+ |.+ .|+.-+...- +. +...++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~v--------------lyi~~E~~~~------~~--~a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIA--------------AFIDAEHALD------PE--YAKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCE--------------EEEESSCCCC------HH--HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeE--------------EEEECCCCcC------HH--HHHHcCC
Confidence 577999999999999999999888875432211 222 2222221110 00 1122222
Q ss_pred CccccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCC
Q 005423 212 PGFFCQRKNGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL----------DS---VSALLMMVTLKKL----ASTGC 272 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgL----------D~---~~~~~i~~~L~~l----~~~g~ 272 (697)
....-.-....+. .+-+.++++++.+ |+++++||+++.+ |+ ..+..+.+.+++| .+.|+
T Consensus 112 ~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~ 189 (349)
T 2zr9_A 112 DTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT 189 (349)
T ss_dssp CGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 1100000011133 2345678888765 9999999999998 33 2223444555555 35689
Q ss_pred EEEEEEecChH---------------HHHhccCEEEEEeCCeEEEEeC
Q 005423 273 TLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 305 (697)
Q Consensus 273 tvi~tih~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 305 (697)
|||++.|.... .+...||.++.++.++++..|+
T Consensus 190 tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 190 TAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp EEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred EEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 99997775431 2567899999998877665554
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.90 E-value=1.3e-09 Score=114.72 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=88.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHH-HcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLP 212 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~-~l~l~ 212 (697)
++|++++|+|+||+||||+++.|++.+.+.. | +.+.++.++.. ..+..|.+...+ ..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHHTTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHHHhcCCC
Confidence 4799999999999999999999999886532 5 23455555542 346677776533 22333
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEEEEecChHHHHhcc
Q 005423 213 GFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA---STGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 213 ~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~---~~g~tvi~tih~~~~~i~~~~ 289 (697)
... ..+ ++.-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++-..+...++.+.+
T Consensus 164 ~~~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 164 LEV-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp CCB-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred eEe-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 211 112 3344556654 5999999999 99999876655544443332 223344442234445777778
Q ss_pred CEEEEEeCCeEEEE
Q 005423 290 DRICLLSNGNTLFF 303 (697)
Q Consensus 290 D~v~vL~~G~iv~~ 303 (697)
|++..+..+.+|..
T Consensus 234 ~~~~~l~~~giVlt 247 (296)
T 2px0_A 234 KRFSSVPVNQYIFT 247 (296)
T ss_dssp TTTSSSCCCEEEEE
T ss_pred HHHhcCCCCEEEEe
Confidence 87766667777763
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.89 E-value=9.6e-12 Score=133.12 Aligned_cols=129 Identities=25% Similarity=0.243 Sum_probs=90.5
Q ss_pred cceeeeeeeEEcCC-------cEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCccEEEEcC
Q 005423 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (697)
Q Consensus 123 ~~iL~~vs~~v~~G-------e~~aIiG~sGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (697)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888776 889999999999999999999986221 01235555544332 112356899999
Q ss_pred ccccCCCCCHHHHHHHHHHc-CC-----------------Cc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005423 190 ETTLIGSLTVREYLYYSALL-QL-----------------PG----FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDE 247 (697)
Q Consensus 190 ~~~l~~~lTV~e~l~~~~~l-~l-----------------~~----~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 247 (697)
.+.+.+ ++.|++...... +. +. ..+.++..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~-------------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII-------------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE--------------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce--------------
Confidence 887764 788887543211 10 00 01334568999999998655
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~ 269 (697)
.+||+.+..++.+.|++.++
T Consensus 175 --~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 --LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --EECCCCCHHHHHHHHHHHHH
T ss_pred --eeCCCCCHHHHHHHHHHHHH
Confidence 78898899999999999875
No 153
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.89 E-value=1.9e-10 Score=121.51 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CccEEEEcCccccC-----CCCCHH
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETTLI-----GSLTVR 200 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~l~-----~~lTV~ 200 (697)
.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|++.... ...+||++|.+.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 888765 99999 88764321 12579999988553 67899
Q ss_pred HHH--HHHH------HcC--CC------------------c-cccccCCCCCHHHHHHHHHHHH
Q 005423 201 EYL--YYSA------LLQ--LP------------------G-FFCQRKNGLPCGERRRVRIARE 235 (697)
Q Consensus 201 e~l--~~~~------~l~--l~------------------~-~~~~~~~~LSGGqrqRv~IA~a 235 (697)
|++ .|.. ..+ .+ . ..+++++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 877 4431 111 00 0 1122336799988999999874
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.81 E-value=1.9e-09 Score=120.08 Aligned_cols=172 Identities=12% Similarity=0.086 Sum_probs=107.0
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCC---Cc----cEEEEcCccccC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMP---YG----SYGFVERETTLI 194 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~~---~~----~~~yv~Q~~~l~ 194 (697)
...|+++.+-+++|+++.|.|++|+|||||+..+++...+.. | .|.+.+...... .+ ..++..+. ..-
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~ 265 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRT 265 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHT
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCCCHHHHHHHHHHHHcCCCHHH-Hhc
Confidence 356888888899999999999999999999999988654311 3 444433211100 00 01111111 011
Q ss_pred CCCCHHHHHHHHH---HcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HHHHHHHH
Q 005423 195 GSLTVREYLYYSA---LLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD--------SVSALLMM 261 (697)
Q Consensus 195 ~~lTV~e~l~~~~---~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD--------~~~~~~i~ 261 (697)
..++..|.-.+.. .+......-....++|++|.+ +.++.++ .+|+++++|+++...+ .....++.
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 1233322211111 111112222334689999987 5677776 6899999999999774 23446788
Q ss_pred HHHHHHHH-cCCEEEEEEec-----------Ch-------HHHHhccCEEEEEeCCeE
Q 005423 262 VTLKKLAS-TGCTLLFTINQ-----------SS-------TEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 262 ~~L~~l~~-~g~tvi~tih~-----------~~-------~~i~~~~D~v~vL~~G~i 300 (697)
+.|+.+++ .|.+||+++|- |. ..+.+.||.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 88898884 58999997761 32 146778999999987653
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.77 E-value=2.5e-09 Score=119.35 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=46.8
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
.+|+++|+.+++ |+++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 589999999999 9999999999999999999999998876 9999999764
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.76 E-value=1.1e-09 Score=115.62 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=47.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CccEEEEcCccc-----------
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT----------- 192 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~----------- 192 (697)
.+.+|++++|+||||||||||+|+|+|+.+|.. |+|.+ +|+..... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345799999999999999999999999998875 99999 88764321 135789999874
Q ss_pred -----cCCCCCHHHHHHHH
Q 005423 193 -----LIGSLTVREYLYYS 206 (697)
Q Consensus 193 -----l~~~lTV~e~l~~~ 206 (697)
+++++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5677777 776653
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=1e-08 Score=100.02 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=73.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCC--------CceeEEEECCEeCC-------CCCccEEEEcC---c-c-cc-CCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSA--------RMYGEVFVNGAKSE-------MPYGSYGFVER---E-T-TL-IGS 196 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~--------~~~G~I~i~G~~~~-------~~~~~~~yv~Q---~-~-~l-~~~ 196 (697)
.++|+|+||||||||++.|+|...+.. ..+|+|.++|++.. ...+..+++++ . + .+ .-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 489999999999999999999865411 13689999996421 00111122221 1 0 00 001
Q ss_pred CC---HHHHHH-HHHHc---CCCc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 197 LT---VREYLY-YSALL---QLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 197 lT---V~e~l~-~~~~l---~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+ ..+++. +...+ .... ..--...+|..-..+++.+|++|+.+|+++++| ||++|.....++++.|.+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 11 122322 11100 0000 000001122222234578899999999999999 999999999999988875
Q ss_pred H
Q 005423 267 L 267 (697)
Q Consensus 267 l 267 (697)
.
T Consensus 189 ~ 189 (191)
T 1oix_A 189 E 189 (191)
T ss_dssp H
T ss_pred H
Confidence 3
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.65 E-value=2e-09 Score=105.79 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=45.0
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCccEEEEcCccccCCCCCHHHH
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45567999999999999999999999999864 2445553321 123457899998776655554443
No 159
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=1.6e-08 Score=106.90 Aligned_cols=69 Identities=26% Similarity=0.266 Sum_probs=43.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---c-cEEEEcCccccCC----CCCH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---G-SYGFVERETTLIG----SLTV 199 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~-~~~yv~Q~~~l~~----~lTV 199 (697)
+.+.+|++++|+||||+|||||+|+|+|..++.. |+|.+ +|+...... + ..+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4566899999999999999999999999988764 99998 776543211 1 2699999987765 6789
Q ss_pred HHHH
Q 005423 200 REYL 203 (697)
Q Consensus 200 ~e~l 203 (697)
|++
T Consensus 245 -e~l 247 (307)
T 1t9h_A 245 -EEL 247 (307)
T ss_dssp -HHH
T ss_pred -HHH
Confidence 888
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.57 E-value=6.3e-08 Score=108.24 Aligned_cols=111 Identities=23% Similarity=0.323 Sum_probs=73.4
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHH
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY 204 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~ 204 (697)
.++++++.+.+| +.|.||+|+|||||+++|++..... -+.+++.. +. ..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~----------------~~-~~------- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSD----------------FV-EL------- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGG----------------TT-TC-------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHH----------------HH-HH-------
Confidence 455556666667 8899999999999999999854211 11221111 00 00
Q ss_pred HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----Hc
Q 005423 205 YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----ST 270 (697)
Q Consensus 205 ~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~ 270 (697)
. .+ .|++++|..++++....|.|||+||+ +.|.|......+.++|..+. ..
T Consensus 89 ------~--------~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ------F--------VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ------C--------TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ------H--------hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00 26788999999999999999999999 34677776667777777664 34
Q ss_pred CCEEEEEEecC
Q 005423 271 GCTLLFTINQS 281 (697)
Q Consensus 271 g~tvi~tih~~ 281 (697)
+..||.++|.|
T Consensus 154 ~viVIaaTn~~ 164 (476)
T 2ce7_A 154 GIIVMAATNRP 164 (476)
T ss_dssp TEEEEEEESCG
T ss_pred CEEEEEecCCh
Confidence 67788888876
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.55 E-value=1.5e-11 Score=127.98 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=75.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CccEEEEcCccc-cCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (697)
..+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999 99999999999999999999875 2889998754211 0 123455666542 3445
Q ss_pred CCHHHHHHHHHHcCCC----------ccccccCCCCCHHHHHHHHHHHHHhhCCCE
Q 005423 197 LTVREYLYYSALLQLP----------GFFCQRKNGLPCGERRRVRIARELVMRPHV 242 (697)
Q Consensus 197 lTV~e~l~~~~~l~l~----------~~~~~~~~~LSGGqrqRv~IA~aL~~~P~i 242 (697)
+++.|++......+.. ....+....|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 5565665322110000 001122356899999999999999998876
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.52 E-value=2.4e-09 Score=120.41 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=89.2
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCC-CccEEEEcCccccCC--CCCHH--
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIG--SLTVR-- 200 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~--~lTV~-- 200 (697)
.+++.+.+|..++|.|++||||||+++.|.. +..... |++.+.+.+.... ... | ..-+++.. ...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~el~~--~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKMLELSV--Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSSGGGG--G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchhhhhh--h-ccCCcccceeecCHHHH
Confidence 3667778899999999999999999999875 333222 5565554432210 000 0 00011110 00121
Q ss_pred -HHHHHH-----------HHcCCCccc--c-ccCCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCH
Q 005423 201 -EYLYYS-----------ALLQLPGFF--C-QRKNGLPCGERRRV----------RIARELVMRPH-VLFIDEPLYHLDS 254 (697)
Q Consensus 201 -e~l~~~-----------~~l~l~~~~--~-~~~~~LSGGqrqRv----------~IA~aL~~~P~-iLlLDEPTsgLD~ 254 (697)
+.|... +..+..+.. + +....+||||+||. .+|+++...|. ++++||++.-+|.
T Consensus 233 ~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 233 ANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 222110 011111110 0 11134678887652 35666778898 7899999998884
Q ss_pred HHHHHHHHHHHHHHHc----CCEEEEEEecChHH-----H-HhccCEEEE
Q 005423 255 VSALLMMVTLKKLAST----GCTLLFTINQSSTE-----V-FGLFDRICL 294 (697)
Q Consensus 255 ~~~~~i~~~L~~l~~~----g~tvi~tih~~~~~-----i-~~~~D~v~v 294 (697)
....+.+.|.++++. |.++|+++|.|..+ + .++.+||.+
T Consensus 313 -~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 313 -VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp -HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred -hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 345566777766543 67899989988632 3 344556554
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.48 E-value=3e-11 Score=123.66 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CccEEEEcCccc-cCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGSL 197 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~l 197 (697)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5788999999999 99999999999999999999875 2889998754211 0 123455555532 33445
Q ss_pred CHHHHHHHHHHcCCC-----c-----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005423 198 TVREYLYYSALLQLP-----G-----FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEP 248 (697)
Q Consensus 198 TV~e~l~~~~~l~l~-----~-----~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 248 (697)
++.|++......+.. . ...+....|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 555555321110000 0 01122256889999999999999998876 4543
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=6.1e-10 Score=121.01 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=78.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc-cCCCCCH--
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT-LIGSLTV-- 199 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~-l~~~lTV-- 199 (697)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..-+.+.......+++++|... ++...+.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999863 27765511111110112455555432 1111110
Q ss_pred -----------------HHHHHHHH-H--cC-----------CCccccccCCCCCHHHHHHHHHHHHHhhCCCEEE-EeC
Q 005423 200 -----------------REYLYYSA-L--LQ-----------LPGFFCQRKNGLPCGERRRVRIARELVMRPHVLF-IDE 247 (697)
Q Consensus 200 -----------------~e~l~~~~-~--l~-----------l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLl-LDE 247 (697)
.++...+. . +. -+...+.....+++|+++|+..+.+++.+|++++ ||+
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 11111000 0 00 1223344557799999999999888899999887 999
Q ss_pred CCC
Q 005423 248 PLY 250 (697)
Q Consensus 248 PTs 250 (697)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 987
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=4.6e-08 Score=98.51 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH-cCCCC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~-G~~~~ 162 (697)
.+..+++|+.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99754
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=2.7e-07 Score=90.16 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=70.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CCC---CceeEEEECCEeCC-----CC----CccEEE-EcCc-c-cc-CCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP-----HSA---RMYGEVFVNGAKSE-----MP----YGSYGF-VERE-T-TL-IGS 196 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~-----~~~---~~~G~I~i~G~~~~-----~~----~~~~~y-v~Q~-~-~l-~~~ 196 (697)
.++|+|+||||||||++.|+|... ++. ...|+|.++|.+.. .+ .+.+.. ..++ + .+ ...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 479999999999999999999753 211 12589999996421 11 111111 1111 0 00 001
Q ss_pred CC---HHHHHH-HHHHc---CCCc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005423 197 LT---VREYLY-YSALL---QLPG---FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 266 (697)
Q Consensus 197 lT---V~e~l~-~~~~l---~l~~---~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 266 (697)
.+ -.+++. +...+ .... ..--...+|..-..+....|++|+.+|+++++| ||++|.....++++.|.+
T Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 87 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 11 122221 11111 0000 000000122211112345689999999999999 999999999999988876
Q ss_pred HH
Q 005423 267 LA 268 (697)
Q Consensus 267 l~ 268 (697)
..
T Consensus 165 ~~ 166 (199)
T 2f9l_A 165 EI 166 (199)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.41 E-value=4.8e-07 Score=97.40 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=81.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCC--CccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMP--YGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~--~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
=+++|+++.|.||+|||||||+..+++...+.+ |.+ ++++...... .+++++.+|+..+....++.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~------- 126 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ------- 126 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-------
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-------
Confidence 567999999999999999999999998754432 444 5544321110 112333333322222223333
Q ss_pred cCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHH-
Q 005423 209 LQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD----------------SVSALLMMVTLKKLAS- 269 (697)
Q Consensus 209 l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD----------------~~~~~~i~~~L~~l~~- 269 (697)
-+.+++.++ .+|+++++|+-++-.. ...-.++++.|+++++
T Consensus 127 --------------------~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 127 --------------------ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp --------------------HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 3578888887655443 1122345666677764
Q ss_pred cCCEEEEEEecC---------------hHHHHhccCEEEEEeCCe
Q 005423 270 TGCTLLFTINQS---------------STEVFGLFDRICLLSNGN 299 (697)
Q Consensus 270 ~g~tvi~tih~~---------------~~~i~~~~D~v~vL~~G~ 299 (697)
.+.+||++.|-. ...+..++|-++.|..++
T Consensus 187 ~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~ 231 (356)
T 3hr8_A 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGE 231 (356)
T ss_dssp SSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEE
T ss_pred cCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEecc
Confidence 478888865541 112456889999998643
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.36 E-value=6.3e-07 Score=96.55 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
..-.++|+|++|+|||||++.|+|..... | +.+.......++.+.++...+ .....++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~----~-----~~~~~t~~~~~~~~~~~~~~~------------~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEI----A-----SYPFTTRGINVGQFEDGYFRY------------QIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEE----E-----CCTTCSSCEEEEEEEETTEEE------------EEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----C-----CCCCeeeceeEEEEEecCceE------------EEEeCCCc
Confidence 45579999999999999999999865211 1 111111111233333321100 01123444
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 278 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ti 278 (697)
.......+|+||+|++. +.+...++-++++| +|++++|...+..+++.+++... +..+|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 44455678999999887 55556777889999 99999999998888888777653 66666656
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=1.7e-08 Score=102.17 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.4
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
.++++|+...+. . ++.+.+ ++++|+|||||||||||++|+|+++|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~-------~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE-------E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC-------C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777654331 0 455556 8999999999999999999999998875 9999998764
No 170
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.27 E-value=7.5e-07 Score=94.69 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
++++++.+++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 367888889999999999999999999999999887654 8888876543
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.25 E-value=1.8e-07 Score=110.68 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEEE-eC
Q 005423 220 NGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-SN 297 (697)
Q Consensus 220 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~vL-~~ 297 (697)
.-+|+|+.+|..+++.++.+++++++|||.. +||......+++.+.+.....++|+++.+++...+.+++++..++ ..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCccccc
Confidence 4578999999999999999999999999996 999887777777776655556788887555666777777754333 24
Q ss_pred Ce
Q 005423 298 GN 299 (697)
Q Consensus 298 G~ 299 (697)
|+
T Consensus 269 gr 270 (773)
T 2xau_A 269 GR 270 (773)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.24 E-value=4.9e-08 Score=96.14 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 34589999999999999999999999875 7788887654
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.18 E-value=1.6e-07 Score=96.48 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEecccccCcceeeeeeeEEcC---CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~v~~---Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|+ ++.|. ....+|+|+|+.+++ |+.++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 98882 235799999999999 9999999999999999999999864
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.17 E-value=1.4e-06 Score=93.04 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=82.3
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++......+ +. +.|+.- +++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 34566666678999999999999999999988876432111 22 333322 23444433
Q ss_pred H--HHHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEE
Q 005423 204 Y--YSALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFT 277 (697)
Q Consensus 204 ~--~~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t 277 (697)
. .+...+++... -+...||++|.+|++.|...+.++++.|.|+|... ..+|...++++.++ |..+|++
T Consensus 91 ~Rlls~~~~v~~~~-l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 91 LRALSDLTSINMHD-LESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHCCCHHH-HHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHhhCCCHHH-HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 12222332211 11247999999999999999999999999998654 33677777777644 5666663
No 175
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.16 E-value=7e-06 Score=86.88 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=29.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666666688999999999999999999988874
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.08 E-value=8.2e-07 Score=86.33 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=25.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999874
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.06 E-value=1.7e-05 Score=82.34 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
++..+.|.||+|+|||||+++|++.... --+.+++. .+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~----------------~l~~------------------- 92 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAA----------------SLTS------------------- 92 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEEST----------------TTSS-------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHH----------------HHhh-------------------
Confidence 5678999999999999999999986421 11222110 0000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEEec
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------SALLMMVTLKKLAS----TGCTLLFTINQ 280 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~tih~ 280 (697)
.. .-+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..+.. .+..+|.+++.
T Consensus 93 --~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 93 --KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp --SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred --cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 00 11467888888888888999999999998776532 22334444443321 23455666665
Q ss_pred Ch---HHHHhccCEEEEE
Q 005423 281 SS---TEVFGLFDRICLL 295 (697)
Q Consensus 281 ~~---~~i~~~~D~v~vL 295 (697)
|. ..+..-||+.+.+
T Consensus 169 ~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 169 PQELDEAALRRFTKRVYV 186 (297)
T ss_dssp GGGBCHHHHHHCCEEEEC
T ss_pred hhhCCHHHHhhCCeEEEe
Confidence 42 2334456655433
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.05 E-value=2.3e-07 Score=91.26 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=39.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (697)
...+.++...++|++++|+||||||||||+++|+++++. . |.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~-~---G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ-K---GKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH-T---TCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-c---CceEEEecCchh
Confidence 345566666679999999999999999999999998762 2 666 7777543
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.02 E-value=2.3e-05 Score=83.92 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~ 208 (697)
+-+++|+++.|.||+|+|||||+..++.. .+... | |. ...+.|+.-+..+ ...+-......
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 46889999999999999999999998874 33210 0 00 0123333333211 11111111222
Q ss_pred cCCCcc--cc--ccCCCCCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHH
Q 005423 209 LQLPGF--FC--QRKNGLPCGE-RRRVRIARELV----MRPHVLFIDEPLYHLDSV------------SALLMMVTLKKL 267 (697)
Q Consensus 209 l~l~~~--~~--~~~~~LSGGq-rqRv~IA~aL~----~~P~iLlLDEPTsgLD~~------------~~~~i~~~L~~l 267 (697)
++.... .+ ......++.+ .+.+..++.++ .+++++++|+.++-.+.. ...+++..|+++
T Consensus 180 ~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~l 259 (343)
T 1v5w_A 180 FNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKI 259 (343)
T ss_dssp TTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 221110 00 0001123333 34555666666 569999999999866432 134566667777
Q ss_pred HH-cCCEEEEEEe
Q 005423 268 AS-TGCTLLFTIN 279 (697)
Q Consensus 268 ~~-~g~tvi~tih 279 (697)
++ .+.+||++.|
T Consensus 260 a~~~~~~Vi~~nq 272 (343)
T 1v5w_A 260 SEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHTCEEEEEEC
T ss_pred HHHhCCEEEEEee
Confidence 64 5888888554
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.01 E-value=6.6e-06 Score=88.54 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEe-----CCCCCccEEEEcCccc-cCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAK-----SEMPYGSYGFVERETT-LIG 195 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~-----~~~~~~~~~yv~Q~~~-l~~ 195 (697)
.+|+++++.+. .++|+|++|||||||++.|+| .+|.+. |.+.-.... ........+...+.+. .+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~---~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGS---GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFT 98 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCS---SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCC---CcccCcceEEEEecCCCcccceeeeecCCCcccC
Confidence 46777777776 899999999999999999999 445543 433222111 1111112232222211 111
Q ss_pred C-CCHHHHHHHHHH----------------------------cCCCccccc-cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 005423 196 S-LTVREYLYYSAL----------------------------LQLPGFFCQ-RKNGLPCGERRRVRIARELVMRPHVLFI 245 (697)
Q Consensus 196 ~-lTV~e~l~~~~~----------------------------l~l~~~~~~-~~~~LSGGqrqRv~IA~aL~~~P~iLlL 245 (697)
. -.+.+.+..... ..+|+.... ...+.++.++++..+++..+.+|+++++
T Consensus 99 ~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 99 DFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp CHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1 012222211100 011221111 1134678899999999999999998777
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEec
Q 005423 246 DEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQ 280 (697)
Q Consensus 246 DEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~tih~ 280 (697)
.-..+..|... ...+++++.+...| .++++ .+.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V-~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPSGDRTFGV-LTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTTCTTEEEE-EEC
T ss_pred EeecccCCcCC-HHHHHHHHHhcccCCCEEEE-EeC
Confidence 74334445433 45567777776555 45555 444
No 181
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.98 E-value=3e-06 Score=81.50 Aligned_cols=38 Identities=32% Similarity=0.151 Sum_probs=33.8
Q ss_pred ee--eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 125 VV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 125 iL--~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 7889999999 99999999999999999999987653
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.98 E-value=3.3e-06 Score=82.60 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
++.+|++++|+||||||||||+++|+++..++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998553
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=2.9e-06 Score=83.30 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred CcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
...+++|||+.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.96 E-value=2.1e-05 Score=84.34 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHH-HHHcCC
Q 005423 135 PGT--MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY-SALLQL 211 (697)
Q Consensus 135 ~Ge--~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~-~~~l~l 211 (697)
+|. .+.|.||+|+|||||++.+++...+.. ...-+.+|.. + ..+..+.+.- ...++.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~---------------~----~~~~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF---------------I----YRNFTAIIGEIARSLNI 100 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT---------------T----CCSHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc---------------c----CCCHHHHHHHHHHHhCc
Confidence 456 899999999999999999998765431 0022333221 1 1122222211 112221
Q ss_pred CccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEecC
Q 005423 212 PGFFCQRKNGLPCGERRRVRIAREL--VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQS 281 (697)
Q Consensus 212 ~~~~~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~tih~~ 281 (697)
+ ....+.+.++..... ...+ ..+|.+|++||+... |......+.+.+.++.. .+.++|+++|.+
T Consensus 101 ~----~~~~~~~~~~~~~~l-~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 101 P----FPRRGLSRDEFLALL-VEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp C----CCSSCCCHHHHHHHH-HHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred c----CCCCCCCHHHHHHHH-HHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 1 112344544433321 1222 245889999999876 88888888888877765 577888877876
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.96 E-value=1.8e-06 Score=95.79 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=51.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEEecChHHHHhccCEEEE-EeCCeEEEEeCch
Q 005423 238 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 307 (697)
Q Consensus 238 ~~P~iLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 307 (697)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6788899999998888899999888875543333344333 4457777666654
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.94 E-value=3.5e-06 Score=81.46 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (697)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 69999999999999999999999987642 23555443
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.91 E-value=5.1e-05 Score=80.43 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=75.3
Q ss_pred eeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHH
Q 005423 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (697)
Q Consensus 126 L~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l 203 (697)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44432 568899999999999999999999888642 2210 00 00 0123333332211 111111
Q ss_pred HHHHHcCCCcc--cc--ccCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H----HHHHHHHH
Q 005423 204 YYSALLQLPGF--FC--QRKNGLPCG-ERRRVRIARELV---MRPHVLFIDEPLYHLDS--------V----SALLMMVT 263 (697)
Q Consensus 204 ~~~~~l~l~~~--~~--~~~~~LSGG-qrqRv~IA~aL~---~~P~iLlLDEPTsgLD~--------~----~~~~i~~~ 263 (697)
.....++.... .+ ...+..++. +.+.+..++.++ .+|+++++|+.++-.+. . ...+++..
T Consensus 160 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~ 239 (324)
T 2z43_A 160 NMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQ 239 (324)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHH
Confidence 11122222110 00 001122333 335677788887 57999999999986532 1 12456666
Q ss_pred HHHHHH-cCCEEEEEEec
Q 005423 264 LKKLAS-TGCTLLFTINQ 280 (697)
Q Consensus 264 L~~l~~-~g~tvi~tih~ 280 (697)
|+++++ .+.+||++.|.
T Consensus 240 L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 240 LTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHhCCEEEEEcce
Confidence 666664 58888886543
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.89 E-value=1.1e-06 Score=86.58 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=70.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCccccc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~ 217 (697)
+++|+|+|||||||+.+.|+++ |...+++.... +.+ .+ ....++.+.. ...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~---~~~---~~----~~~~~~~~i~---~~~g~~----- 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVA---REV---VA----KDSPLLSKIV---EHFGAQ----- 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHH---HHT---TC----SSCHHHHHHH---HHHCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHH---HHH---cc----CChHHHHHHH---HHhCHH-----
Confidence 6899999999999999999983 33334332110 000 00 0011111111 111111
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH-HHhccCEEEEEe
Q 005423 218 RKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-VFGLFDRICLLS 296 (697)
Q Consensus 218 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~-i~~~~D~v~vL~ 296 (697)
.-.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+.+|..... ....||.+++++
T Consensus 58 --~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 58 --ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp --CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred --HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 113678999999999988888654333 2345555555554444332 355677665543211 256789888885
Q ss_pred CCeEEEEeCchhhHHhh
Q 005423 297 NGNTLFFGETLACLQHF 313 (697)
Q Consensus 297 ~G~iv~~G~~~~~~~~f 313 (697)
.+.+...+..
T Consensus 132 -------~~~e~~~~Rl 141 (206)
T 1jjv_A 132 -------VSPQTQLARS 141 (206)
T ss_dssp -------CCHHHHHHHH
T ss_pred -------CCHHHHHHHH
Confidence 3455555444
No 189
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.89 E-value=1.2e-05 Score=86.87 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCccEEEEcCc---------------
Q 005423 135 PGTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERE--------------- 190 (697)
Q Consensus 135 ~Ge~-~aIiG~sGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~--------------- 190 (697)
.|-. ++|+|++|||||||++.|+|..... ....|.|.++|.+... ....|++.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~~lve~f~~tl~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPPQIVDAFFVTLSEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCHHHHHHHHHHHHHH
Confidence 3444 9999999999999999999986421 0246999999864310 0112222110
Q ss_pred ---ccc---C--CCCC--HHHHHH----HHHHcCCCcc----ccccCCCCCHHHHHHHHHH----HHH-hhCCCEEEEeC
Q 005423 191 ---TTL---I--GSLT--VREYLY----YSALLQLPGF----FCQRKNGLPCGERRRVRIA----REL-VMRPHVLFIDE 247 (697)
Q Consensus 191 ---~~l---~--~~lT--V~e~l~----~~~~l~l~~~----~~~~~~~LSGGqrqRv~IA----~aL-~~~P~iLlLDE 247 (697)
+.+ + .... ..+.+. ....++..+. ...+...+|+|+++|+.++ +++ ..+|++ +
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~ 331 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----I 331 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----E
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----E
Confidence 000 0 0001 122111 1111222111 1233345788889988887 554 334444 8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 005423 248 PLYHLDSVSALLMMVTLKKLAS 269 (697)
Q Consensus 248 PTsgLD~~~~~~i~~~L~~l~~ 269 (697)
|+|++|......+.+.|.++..
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 190
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.88 E-value=1.2e-06 Score=89.67 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------CccEEEEcCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKSEMP------YGSYGFVERE 190 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~---G~~~~~~~~~G~I~--------i~G~~~~~~------~~~~~yv~Q~ 190 (697)
++|++++|+|||||||||++++|+ |+..++. |.|. .+|.+.... .+.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~---g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS---GAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH---HHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC---CceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 589999999999999999999999 8876653 8888 788765221 1346777764
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.82 E-value=4.6e-06 Score=83.94 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=32.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
.++|++++|.|+||||||||+++|+|+ . |+|.+++.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 358999999999999999999999997 2 888888765
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=1e-05 Score=80.16 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999875
No 193
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.78 E-value=4.5e-05 Score=80.11 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccc---cC--CCCC--HHHHHHHHH
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT---LI--GSLT--VREYLYYSA 207 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~---l~--~~lT--V~e~l~~~~ 207 (697)
++..++|+|++|+|||||++.|.|.... + ..+.+.....+..+++.+++. +. |..- ....+.- .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~-~ 77 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINR-L 77 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHH-H
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHH-H
Confidence 3448999999999999999999986311 0 011111111223444444321 11 1111 1111110 0
Q ss_pred HcC-----CCc-----cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC-
Q 005423 208 LLQ-----LPG-----FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC- 272 (697)
Q Consensus 208 ~l~-----l~~-----~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~- 272 (697)
..+ +.. ..-.... +|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |.
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFL 149 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcC
Confidence 001 110 0011123 999986 5666776 68999999 7899876 66788888888753 43
Q ss_pred -EEEEEEecChHHHHhccCEE
Q 005423 273 -TLLFTINQSSTEVFGLFDRI 292 (697)
Q Consensus 273 -tvi~tih~~~~~i~~~~D~v 292 (697)
.+.++.|+ ...+.+++|.+
T Consensus 150 ~~i~iSA~~-g~~v~~l~~~i 169 (301)
T 1ega_A 150 DIVPISAET-GLNVDTIAAIV 169 (301)
T ss_dssp EEEECCTTT-TTTHHHHHHHH
T ss_pred ceEEEECCC-CCCHHHHHHHH
Confidence 33333333 23444455543
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.77 E-value=3.8e-05 Score=84.69 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=71.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHH-HHcCCCc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLPG 213 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~-~~l~l~~ 213 (697)
++.+++++|++|+||||++..|++.+...+ ++|.+-+.+.. . ....|.+... ...+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D~~----------------r-~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAADVY----------------R-PAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCS----------------C-HHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecCcc----------------c-hhHHHHHHHHHHhcCCce
Confidence 588999999999999999999998876543 56655443311 0 0123444332 2333332
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHHcCCEEEE
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPL-YH--LDSVSALLMMVTLKKLASTGCTLLF 276 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT-sg--LD~~~~~~i~~~L~~l~~~g~tvi~ 276 (697)
.. ...+..--+-.+-+++.+...+++++|+|+|- .+ .|.....++.+.++.+......+++
T Consensus 156 ~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVl 219 (433)
T 3kl4_A 156 YG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVI 219 (433)
T ss_dssp EC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEE
T ss_pred ee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEE
Confidence 21 11112222223345555556799999999997 35 7887777777666555433333333
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.76 E-value=1.1e-05 Score=94.02 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CccEEEEcCccccCCCCCHHHHHHH
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTVREYLYY 205 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV~e~l~~ 205 (697)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+.+..|...+... ++..|+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl-- 78 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL-- 78 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence 445689999999999999999999999765432 123777 555433221 1234444444333211 111111
Q ss_pred HHHcCCCccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecC
Q 005423 206 SALLQLPGFFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 281 (697)
Q Consensus 206 ~~~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~ 281 (697)
...|+.. .+ ........-..+..++++| |+.|+|..+. +.++.+.+.+..+|+++|..
T Consensus 79 ---iDTpG~~-----~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 79 ---LDAPGYG-----DF-----VGEIRGALEAADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp ---EECCCSG-----GG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECG
T ss_pred ---EeCCCcc-----ch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCC
Confidence 0111110 01 1122333346788899999 9999998776 33444445677777777764
No 196
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.74 E-value=3.8e-08 Score=110.63 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=39.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
.+++++++.+.+| +.|+||||+|||||+++|+|... .|.+.++|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 4678888888899 99999999999999999999864 2788888754
No 197
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.71 E-value=8.9e-06 Score=81.98 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=78.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
..|+.++|.||+||||||++.++........ |. ...++.+.+.+......++.+++.......+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~---~~-----------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQN---DR-----------AAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHT---TC-----------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhc---CC-----------CCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 4699999999999999998877653211000 10 012334444443333334555543211111100
Q ss_pred cc------cccC--C-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEe
Q 005423 214 FF------CQRK--N-----GLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTIN 279 (697)
Q Consensus 214 ~~------~~~~--~-----~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih 279 (697)
.. .+.. . =.+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++.+
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT 217 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSAT 217 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 00 0000 0 02445555543 33578999999999976 68877665555555544444567888877
Q ss_pred cChHHHHhccCE
Q 005423 280 QSSTEVFGLFDR 291 (697)
Q Consensus 280 ~~~~~i~~~~D~ 291 (697)
.+.....+++++
T Consensus 218 ~~~~~~~~~~~~ 229 (235)
T 3llm_A 218 IDTSMFCEYFFN 229 (235)
T ss_dssp SCCHHHHHHTTS
T ss_pred CCHHHHHHHcCC
Confidence 776665555543
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.70 E-value=6.1e-06 Score=81.19 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=32.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.++|++++|+|+||||||||++.|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 35799999999999999999999999876543 66766443
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.69 E-value=3e-06 Score=96.42 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=38.9
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4567777777 89999999999999999999999987654 377776663
No 200
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=1.5e-05 Score=78.60 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999999875
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=1.3e-05 Score=76.44 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
+|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 69999999999999999999999864 667776643
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00017 Score=73.20 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+.|.||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998753
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.62 E-value=3.5e-05 Score=75.77 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=26.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|++++|+|+||||||||++.|++.++
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999999999753
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.58 E-value=0.00055 Score=73.60 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
=+++|+++.|.|++|+|||||+..++......+ ...++++. +..+- +. ....++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~---------------E~s~~------~~--~a~~~g~ 113 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDA---------------EHALD------PI--YARKLGV 113 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEES---------------SCCCC------HH--HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC---------------CCCcc------HH--HHHHcCC
Confidence 477999999999999999999988775422111 02233332 21110 00 0112221
Q ss_pred Cc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-H------------HHHHHHHHHHHH---H-Hc
Q 005423 212 PG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS-V------------SALLMMVTLKKL---A-ST 270 (697)
Q Consensus 212 ~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~-~------------~~~~i~~~L~~l---~-~~ 270 (697)
.. ..-..+ -+. .+-+.+++.++ .+++++++|+++.-... . .+..+.+.+++| + +.
T Consensus 114 ~~~~l~i~~~--~~~--e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~ 189 (356)
T 1u94_A 114 DIDNLLCSQP--DTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 189 (356)
T ss_dssp CGGGCEEECC--SSH--HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhheeeeCC--CCH--HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 000011 122 23455666665 57999999999986631 1 112334444444 3 56
Q ss_pred CCEEEEEEecChH---------------HHHhccCEEEEEeCCeEEEEe
Q 005423 271 GCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 271 g~tvi~tih~~~~---------------~i~~~~D~v~vL~~G~iv~~G 304 (697)
+.+||++.|.... .+...+|-++.+...++.-.|
T Consensus 190 ~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 190 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp TCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 8888885543211 345578988888766654333
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.58 E-value=0.00028 Score=78.05 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=90.7
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCccE---EEEcCccccCCCCC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSY---GFVERETTLIGSLT 198 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~---~yv~Q~~~l~~~lT 198 (697)
.-|+.+.+=+++|+++.|.|++|+|||||+..++........ ...+.+....... ..+.. +-+..+...-..++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCC
Confidence 456666666889999999999999999999888764321110 0122332211000 00000 00111111111233
Q ss_pred HHHHHHHHH---HcCCCccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHH
Q 005423 199 VREYLYYSA---LLQLPGFFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS----------VSALLMMVT 263 (697)
Q Consensus 199 V~e~l~~~~---~l~l~~~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~----------~~~~~i~~~ 263 (697)
-.|.-.+.. .+......-....++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 222211111 11111111122345676665 34556665 47999999998764432 123567788
Q ss_pred HHHHHH-cCCEEEEEEecCh------------------HHHHhccCEEEEEe
Q 005423 264 LKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLS 296 (697)
Q Consensus 264 L~~l~~-~g~tvi~tih~~~------------------~~i~~~~D~v~vL~ 296 (697)
|+.+++ .+.+||++.|-.. ..+.+.+|.|+.|.
T Consensus 345 Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 345 LKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 888885 5889998666321 03456789999885
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=8.1e-05 Score=77.94 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.4
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4578889999999999999999999875
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.56 E-value=1.5e-05 Score=90.62 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.0
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (697)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 466899999999999999999999999987653 4 674 77643
No 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.55 E-value=9.1e-06 Score=86.25 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=33.1
Q ss_pred cceeeeeeeEEcCCc------EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 123 DKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge------~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++.|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356777777776666 999999999999999999999876
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.53 E-value=6.5e-05 Score=89.32 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=28.2
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.+++|+.++|.||||||||||+++|+|..+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5779999999999999999999999998753
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.53 E-value=7.3e-05 Score=78.78 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=36.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEecChH
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 283 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~ 283 (697)
..+|++|++||+-. ..|..++..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 45799999999865 234478888999999888888888887876643
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=2e-05 Score=77.04 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=31.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCEEEEEEecChHHHHhc
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 288 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~-~~L~~l~~~g~tvi~tih~~~~~i~~~ 288 (697)
+.++++|++||+-. .++...+..++ .++......+..+|++++++..++...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 45688999999933 23333344344 355554456677888888876665543
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.52 E-value=7e-06 Score=87.61 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++..+.|.||+|+|||||++.+++..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998754
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=3.3e-05 Score=73.31 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999763
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=2.1e-05 Score=75.31 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 215
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.41 E-value=0.00092 Score=67.03 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3799999999999999999997653
No 216
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.32 E-value=0.00014 Score=72.16 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.7
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEEecCh
Q 005423 238 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQSS 282 (697)
Q Consensus 238 ~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~tih~~~ 282 (697)
.+|.+|++||.-.-- +...+..+.+.+..+.+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965432 233477788888888776765 777776543
No 217
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.32 E-value=0.00012 Score=68.67 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=24.1
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999873
No 218
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.30 E-value=0.0001 Score=81.08 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.6
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~ 163 (697)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 346679999999999999999999999987653
No 219
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.28 E-value=0.00059 Score=70.07 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++|+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 56679999999999999999999865
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.00016 Score=72.79 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+|+++++||--. |+. .+++.++.+++.|..||++-| .++..+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 356677777777999999888 66788899999999875
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.21 E-value=7.5e-05 Score=71.57 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (697)
+|++++|+|++||||||+++.|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999976542 4 5656554
No 222
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.00013 Score=73.39 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred eeeeeeEEc---CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 126 L~~vs~~v~---~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
|.++++++. +|.+++|.|++||||||+++.|+..+.. + +++..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~---~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-D---YDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-T---SCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-C---CCcee
Confidence 445555554 8999999999999999999999998765 3 55543
No 223
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.19 E-value=3.3e-05 Score=82.54 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=42.1
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEeec
Confidence 457888898889999999999999999999999999876543 666665443
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.17 E-value=0.0026 Score=68.61 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=74.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l 211 (697)
=+++|+++.|.|++|+|||||+..++......+ + .+.|+.-+...- +. +...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~--------------~vlyi~~E~s~~------~~--~a~~~g~ 124 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---G--------------TCAFIDAEHALD------PV--YARALGV 124 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---C--------------CEEEEESSCCCC------HH--HHHHTTC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---C--------------eEEEEECCCChh------HH--HHHHcCC
Confidence 567999999999999999999977764321111 1 233433332111 00 1122222
Q ss_pred Ccc--ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---H-Hc
Q 005423 212 PGF--FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHL-----DS--------VSALLMMVTLKKL---A-ST 270 (697)
Q Consensus 212 ~~~--~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL-----D~--------~~~~~i~~~L~~l---~-~~ 270 (697)
+.. .-..+ -+. .+-+.+++.++ .+++++++|..++=. |. ..+..+.+.+++| + +.
T Consensus 125 d~~~l~i~~~--~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~ 200 (366)
T 1xp8_A 125 NTDELLVSQP--DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKT 200 (366)
T ss_dssp CGGGCEEECC--SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHceeecC--CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHc
Confidence 110 00111 122 23456667776 468999999998754 11 1223355555555 4 45
Q ss_pred CCEEEEEEecChHH----------------HHhccCEEEEEeCCe
Q 005423 271 GCTLLFTINQSSTE----------------VFGLFDRICLLSNGN 299 (697)
Q Consensus 271 g~tvi~tih~~~~~----------------i~~~~D~v~vL~~G~ 299 (697)
+.+||++.| .... +...+|-++.|..++
T Consensus 201 ~~~VI~~nq-~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 201 GTAAIFINQ-VREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp CCEEEEEEE-C---------------CHHHHHHHCSEEEEEEEES
T ss_pred CCEEEEEEe-cccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 788877544 3321 345688888887554
No 225
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.17 E-value=0.0012 Score=61.78 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.16 E-value=0.0012 Score=66.56 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999754
No 227
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.11 E-value=0.0019 Score=69.14 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 56679999999999999999999764
No 228
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.08 E-value=6.7e-05 Score=80.99 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.0
Q ss_pred eEEEEeEEEEEecccccCcceee--------------eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4788899988863 345777 899999999999999999999999999999864
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.06 E-value=0.00094 Score=73.94 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.1
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.-|+.+.+=+++|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 345555556789999999999999999998777653
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.05 E-value=0.0016 Score=71.65 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=38.9
Q ss_pred eeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 005423 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (697)
Q Consensus 127 ~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (697)
+++++. +|++++++|++||||||++..|++.+.+.+ |+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeeccc
Confidence 567776 899999999999999999999999987654 8888876553
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0019 Score=67.98 Aligned_cols=164 Identities=17% Similarity=0.114 Sum_probs=82.9
Q ss_pred eeeeee-eEEcCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEE-ECCEeCCCC-CccEEEEcCccccCCCCCH
Q 005423 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVF-VNGAKSEMP-YGSYGFVERETTLIGSLTV 199 (697)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~--~~~~~~~~G~I~-i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV 199 (697)
.|+.+- +-+++|+++.|.|++|+|||||+..++.- ++. |... ..|...... ...+.|+.-+..+- .
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~-----~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~ 156 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE-----FLFYDEEAVSKGEVAQPKAVYIDTEGTFR----P 156 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG-----GEECCTTTSCTTTTSSEEEEEEESSSCCC----H
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccc-----cccccccccccCCCCCceEEEEECCCCCC----H
Confidence 344433 56789999999999999999999888752 221 0000 000000000 02345554443221 1
Q ss_pred HHHHHHHHHcCCCcc--ccc--cCCCCCHHH-HHHHHHHHHHhh---CCCEEEEeCCCCCCC--------HHH----HHH
Q 005423 200 REYLYYSALLQLPGF--FCQ--RKNGLPCGE-RRRVRIARELVM---RPHVLFIDEPLYHLD--------SVS----ALL 259 (697)
Q Consensus 200 ~e~l~~~~~l~l~~~--~~~--~~~~LSGGq-rqRv~IA~aL~~---~P~iLlLDEPTsgLD--------~~~----~~~ 259 (697)
.+-......++.+.. .++ ..+..+..+ .+-+..++.++. +++++++|.-++-.. ... ..+
T Consensus 157 ~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~ 236 (322)
T 2i1q_A 157 ERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236 (322)
T ss_dssp HHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHH
Confidence 211112222222110 000 011123332 233445556664 589999999876431 111 245
Q ss_pred HHHHHHHHH-HcCCEEEEEEecChH----------------HHHhccCEEEEEeCC
Q 005423 260 MMVTLKKLA-STGCTLLFTINQSST----------------EVFGLFDRICLLSNG 298 (697)
Q Consensus 260 i~~~L~~l~-~~g~tvi~tih~~~~----------------~i~~~~D~v~vL~~G 298 (697)
++..|++++ +.+.+||++ +|... .+.+.+|.++.|+..
T Consensus 237 ~~~~L~~la~~~~~~vi~~-nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 237 HMATLNKLADLFNCVVLVT-NQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEE-ECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHhCCEEEEE-CceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 666666766 458888885 44221 255568888888643
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.00 E-value=0.00099 Score=69.15 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=65.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE-EEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
...+.|.||+|+|||||+++|++...... |. +.++... +.......+ ..+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~----------------~~~~~~~~~------l~g~~~- 100 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTE----------------YMEKHAVSR------LIGAPP- 100 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGG----------------CCSTTHHHH------HHCCCT-
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccc----------------ccccccHHH------hcCCCC-
Confidence 46899999999999999999999765432 32 2222111 111111111 111111
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHH----------cCCEEEEEEecChH
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLAS----------TGCTLLFTINQSST 283 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~----------~g~tvi~tih~~~~ 283 (697)
+..|- .++-.+..++...| .+|++||. ..|++..+..+++.|.+-.- .+..+|++++....
T Consensus 101 ------~~~~~-~~~~~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 101 ------GYVGY-EEGGQLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp ------TSTTT-TTCCHHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred ------ccccc-cccchHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 11111 11113444555555 79999998 56788888888887765321 13336666666444
Q ss_pred HHHhc
Q 005423 284 EVFGL 288 (697)
Q Consensus 284 ~i~~~ 288 (697)
.+.+.
T Consensus 173 ~i~~~ 177 (311)
T 4fcw_A 173 LILEG 177 (311)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 44443
No 233
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00015 Score=77.73 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
++.+++|+|++|||||||++.|+|...+.+ |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 588999999999999999999999876554 777766544
No 234
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.99 E-value=0.00033 Score=69.39 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (697)
+.+++|+|||||||||++++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865211112366654
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00027 Score=69.38 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.95 E-value=0.00089 Score=63.50 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999864
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00014 Score=71.69 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=32.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 005423 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (697)
Q Consensus 133 v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (697)
+++|.+++|+|++||||||+.+.|++.+++.. | .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~---g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDR---RVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH---CCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccc---CCcEEEECCh
Confidence 34799999999999999999999999876332 6 6777654
No 238
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.00039 Score=73.21 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=31.6
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHH-HHHHHHHcCCEEEEEEecChHHHHhcc
Q 005423 237 VMRPHVLFIDEPLY-HLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLF 289 (697)
Q Consensus 237 ~~~P~iLlLDEPTs-gLD~~~~~~i~~-~L~~l~~~g~tvi~tih~~~~~i~~~~ 289 (697)
+.++++|++||.-. .++...+..++. +|.....+++.+|+|++.+..+....+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 56789999999832 344444444554 555543456677787888776665443
No 239
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.0025 Score=58.96 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecChHH
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 284 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~~~ 284 (697)
+..+|++||.- .|+...+..+++.|+.. ..+..+|++++.+..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 56799999984 68888888888888332 2345677777776543
No 240
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.0094 Score=62.85 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||||+++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 55678999999999999999999865
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.83 E-value=0.0032 Score=65.91 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=35.6
Q ss_pred eeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 129 vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
+++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 666655 99999999999999999999999876543 677765544
No 242
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.82 E-value=0.00064 Score=67.03 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=23.8
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 334445554 999999999999999999863
No 243
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.81 E-value=0.00048 Score=66.50 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=30.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (697)
.+++|+|+||||||||++.|.+.++..+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999876543223477776553
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.79 E-value=0.00056 Score=65.96 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred eeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 128 ~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45666778999999999999999999999975
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.79 E-value=0.00023 Score=69.82 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998754
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00043 Score=66.59 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.+|.+++|+|++||||||+++.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999988654
No 247
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.72 E-value=0.0015 Score=72.09 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (697)
.++|+|+||+|||||++.|+|.... + ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997531 0 0235888888864
No 248
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.71 E-value=0.0015 Score=62.93 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888877777 5799999999999999999984
No 249
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=5.4e-05 Score=80.11 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+++|+++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888877543 334555566554
No 250
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00076 Score=65.71 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 005423 138 MTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G 158 (697)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.62 E-value=0.0082 Score=75.91 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=79.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-EECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I-~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
=+++|+++.|.||+|+|||||+..++....... |.+ ++++.. ..- + + .+..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g---~~VlyiS~Ee---------------s~~------q-l-~A~~lG 781 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH---------------ALD------P-I-YARKLG 781 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTS---------------CCC------H-H-HHHHTT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC---CCeEEEeccc---------------hHH------H-H-HHHHcC
Confidence 488999999999999999999999887533221 222 333321 110 0 0 022222
Q ss_pred CCcc--ccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-H
Q 005423 211 LPGF--FCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD-S------------VSALLMMVTLKKL---A-S 269 (697)
Q Consensus 211 l~~~--~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD-~------------~~~~~i~~~L~~l---~-~ 269 (697)
.+.. .-..+. +. .+-...++.++ .+|+++++|+-.+-.. . ..+.++.+.|++| + +
T Consensus 782 vd~~~L~i~~~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke 857 (1706)
T 3cmw_A 782 VDIDNLLCSQPD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857 (1706)
T ss_dssp CCGGGCEEECCS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheEEecCC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 2110 000111 22 24445555554 5799999999987652 1 1223455555554 4 5
Q ss_pred cCCEEEEEEecC---------------hHHHHhccCEEEEEeCCeE
Q 005423 270 TGCTLLFTINQS---------------STEVFGLFDRICLLSNGNT 300 (697)
Q Consensus 270 ~g~tvi~tih~~---------------~~~i~~~~D~v~vL~~G~i 300 (697)
.|.+||++.|.. +..+.+.+|-++.+.+++.
T Consensus 858 ~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 858 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp HTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred cCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEeccc
Confidence 688888865521 1246677888998975543
No 252
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.62 E-value=0.00045 Score=69.41 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEecC-h--------------------HHHHhcc
Q 005423 232 IARELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQS-S--------------------TEVFGLF 289 (697)
Q Consensus 232 IA~aL~~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~tih~~-~--------------------~~i~~~~ 289 (697)
+..+|..+|+++++||+-.- .+........+.+..+...|..++.|+|-- . +.+++.|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 33345578999999997642 342222333344444556788888888711 1 2355677
Q ss_pred CEEEEEeCCeEEEEeCchhhHHhhhh
Q 005423 290 DRICLLSNGNTLFFGETLACLQHFSN 315 (697)
Q Consensus 290 D~v~vL~~G~iv~~G~~~~~~~~f~~ 315 (697)
|.|.+++ -+|+++.+.+..
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRD 175 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHT
T ss_pred CeEEEec-------CCHHHHHHHHHC
Confidence 8777764 467777776654
No 253
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.59 E-value=0.002 Score=63.03 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.++||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 5533 36678888878999999877 66788999999998775
No 254
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.00055 Score=69.69 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 005423 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (697)
..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 3457889999999999999999999987642 456677643
No 255
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.54 E-value=0.00066 Score=65.95 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
+++++++||.=- +|+ .+++.|++++++|..|+++-+. +...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 3667788888779999988772 2345666799887664
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0094 Score=59.25 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=40.0
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHH-HcCCEEEEEEecChH---------HHHhccCEEEEEe
Q 005423 237 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLA-STGCTLLFTINQSST---------EVFGLFDRICLLS 296 (697)
Q Consensus 237 ~~~P~iLlLDEPTs----gLD~~~~~~i~~~L~~l~-~~g~tvi~tih~~~~---------~i~~~~D~v~vL~ 296 (697)
-.+|+++++|--+. .-|.....+++..|++++ +.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45899999996432 114455567777888877 458999997765422 1345789998885
No 257
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.52 E-value=0.00037 Score=74.64 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.5
Q ss_pred ceeeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCC
Q 005423 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 577888888899998 9999999999999999999864
No 258
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0014 Score=69.71 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999765
No 259
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.47 E-value=0.0007 Score=65.78 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=30.9
Q ss_pred cceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++++++..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888877775 689999999999999999874
No 260
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.46 E-value=0.0012 Score=64.37 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.46 E-value=0.0042 Score=65.61 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.7
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+-+.+|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56778999999999999999999999753
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.44 E-value=0.0014 Score=62.64 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999854
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.0014 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
|.++.|.|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.42 E-value=0.016 Score=73.22 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred eeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
-|+.+- +=+++|+++.|.||+|+|||||+-.++......+ + .+.|+.-+...-+ +
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G---~--------------~vlyis~E~s~~~---~--- 426 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---K--------------TCAFIDAEHALDP---I--- 426 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---C--------------CEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C--------------CeEEEEccCchHH---H---
Confidence 455543 3578999999999999999999877764321111 1 2333333322110 0
Q ss_pred HHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-------------HHHHHHHHHHH
Q 005423 203 LYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDS-------------VSALLMMVTLK 265 (697)
Q Consensus 203 l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~-------------~~~~~i~~~L~ 265 (697)
.+..++.+. ..-..+. ++.|- +.+++.++ .+|+++++|..++-... ..+..+.+.++
T Consensus 427 --~a~~lGvd~~~L~i~~~~--~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr 500 (1706)
T 3cmw_A 427 --YARKLGVDIDNLLCSQPD--TGEQA--LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (1706)
T ss_dssp --HHHHTTCCGGGCEEECCS--SHHHH--HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHHcCCCHHHeEEcCCC--CHHHH--HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHH
Confidence 122222211 0001111 33332 34556554 47999999999886641 12233445555
Q ss_pred HH---H-HcCCEEEEEEecCh---------------HHHHhccCEEEEEeCCeEEEEe
Q 005423 266 KL---A-STGCTLLFTINQSS---------------TEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 266 ~l---~-~~g~tvi~tih~~~---------------~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+| + +.|.+||++.|... ..+...+|-++.|...+.+..|
T Consensus 501 ~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp HHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccC
Confidence 55 3 56899998655321 2456789998888765544443
No 265
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.40 E-value=0.014 Score=58.91 Aligned_cols=57 Identities=7% Similarity=0.078 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc---CCEEEEEEecC
Q 005423 224 CGERRRVRIARELV---MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST---GCTLLFTINQS 281 (697)
Q Consensus 224 GGqrqRv~IA~aL~---~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~---g~tvi~tih~~ 281 (697)
.|++.+-.+.+++. .+++++|+--+.+.++. ....+++.++++... +.++|++++-.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 34555556666663 78887766555555554 345566666665422 56777777753
No 266
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.004 Score=60.16 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 267
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.34 E-value=0.028 Score=62.81 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.4
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
-|+.+.+=+.+|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4455444588999999999999999999876664
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.00038 Score=82.74 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=28.3
Q ss_pred eeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 130 s~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
++.+.+|+.+.|.||+|+|||||+++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 45667899999999999999999999998753
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0018 Score=60.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 270
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.31 E-value=0.0058 Score=60.78 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------cChHHHHhccCEEEEEe
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih---------~~~~~i~~~~D~v~vL~ 296 (697)
+.+++++||.-- +|.. +++.|++++..|+.||++-+ .++..+.++||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6533 33778888878999999888 78889999999999885
No 271
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.31 E-value=0.015 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998765
No 272
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.26 E-value=0.0018 Score=70.38 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 131 ~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+..|..++|+|+||+|||||+++|+|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34457889999999999999999999986
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.00062 Score=72.20 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.5
Q ss_pred cceeeeeeeEEcCCcE--EEEECCCCCcHHHHHHHHHcCCCC
Q 005423 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 123 ~~iL~~vs~~v~~Ge~--~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577778888888988 999999999999999999997644
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.20 E-value=0.0052 Score=64.76 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcC
Q 005423 132 YALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (697)
Q Consensus 132 ~v~~Ge~~aIiG~sGsGKSTLl-~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~ 210 (697)
=+.+| ++.|.||+|+|||||+ .+++.....+. .|. +.|+.-+..+.+ . ....++
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~--g~~--------------vlyId~E~s~~~---~-----ra~~lG 79 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYP--DAV--------------CLFYDSEFGITP---A-----YLRSMG 79 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCT--TCE--------------EEEEESSCCCCH---H-----HHHHTT
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCC--Cce--------------EEEEeccchhhH---H-----HHHHhC
Confidence 35689 9999999999999995 44444322100 022 233333222211 0 123333
Q ss_pred CCcc--ccccCCCCCHHHHHHHHHHHHH--h--hCCCEEEEeCCCCCC-----CH----------HHHHHHHHHHHHH--
Q 005423 211 LPGF--FCQRKNGLPCGERRRVRIAREL--V--MRPHVLFIDEPLYHL-----DS----------VSALLMMVTLKKL-- 267 (697)
Q Consensus 211 l~~~--~~~~~~~LSGGqrqRv~IA~aL--~--~~P~iLlLDEPTsgL-----D~----------~~~~~i~~~L~~l-- 267 (697)
+... .-..+ .-+|.+.+.++.+| + .+|++++.|=-++-. +. ..++.+-+.|++|
T Consensus 80 vd~d~llv~~~---~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~ 156 (333)
T 3io5_A 80 VDPERVIHTPV---QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTP 156 (333)
T ss_dssp CCGGGEEEEEC---SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHH
T ss_pred CCHHHeEEEcC---CCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHH
Confidence 3211 10111 13566656777766 3 369999999877643 11 1223344445543
Q ss_pred -H-HcCCEEEEEEec
Q 005423 268 -A-STGCTLLFTINQ 280 (697)
Q Consensus 268 -~-~~g~tvi~tih~ 280 (697)
+ +.+.++|++-|-
T Consensus 157 ~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 157 YFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHhCCEEEEECCe
Confidence 3 568888886554
No 275
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0023 Score=64.09 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999999999743
No 276
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.17 E-value=0.0056 Score=56.46 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEecCh
Q 005423 239 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 282 (697)
Q Consensus 239 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~~~ 282 (697)
+..+|++||.- .|+...+..+++.+.+-...+..+|++++.+.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCCH
Confidence 46899999965 67888888888888775444566777777653
No 277
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.16 E-value=0.0042 Score=69.51 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..-+.|.||+|+|||+|+++|+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 455669999999999999999998764
No 278
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.16 E-value=0.0028 Score=68.27 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.9
Q ss_pred eeeeeeEEcCCcEEEEECCCCCcHHHHHHHHH
Q 005423 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 126 L~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~ 157 (697)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35566666665 99999999999999999986
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.15 E-value=0.0028 Score=60.53 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 280
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.09 E-value=0.013 Score=58.95 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=45.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEec---------ChHHHHhccCEEEEEe
Q 005423 237 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 296 (697)
Q Consensus 237 ~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~tih~---------~~~~i~~~~D~v~vL~ 296 (697)
+.+.+++++||----.| +.++++.+++.|+.||++-+. ++..+.++||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999877654 667777777789999999898 8889999999999875
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.003 Score=65.62 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (697)
.|.++.|.|||||||||+.+.|+...+. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876542 5566765
No 282
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.07 E-value=0.013 Score=62.60 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||||+++|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44558899999999999999999764
No 283
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0029 Score=63.87 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
No 284
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.06 E-value=0.022 Score=72.93 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=84.2
Q ss_pred eeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHH
Q 005423 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (697)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~ 202 (697)
-|+.+- +=+++|+++.|.||+|+|||||+..++......+ ..-+++++. ...-+ +
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E---------------~s~~~---~--- 426 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAE---------------HALDP---I--- 426 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTT---------------SCCCH---H---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcC---------------CCHHH---H---
Confidence 344443 2578999999999999999999887765322111 022333332 11110 0
Q ss_pred HHHHHHcCCCc--cccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHH
Q 005423 203 LYYSALLQLPG--FFCQRKNGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLD-S------------VSALLMMVTLK 265 (697)
Q Consensus 203 l~~~~~l~l~~--~~~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD-~------------~~~~~i~~~L~ 265 (697)
.+..++.+. ..-. ..-+.. +-+.+++.|+ .+|+++++|.-++-.. . ..+..+.+.|+
T Consensus 427 --~a~~lGvd~~~L~I~--~~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 427 --YARKLGVDIDNLLCS--QPDTGE--QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp --HHHHTTCCTTTCEEE--CCSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHHcCCCHHHeEEe--CCCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 012222211 0000 112333 3456667665 4799999999887552 1 12334556666
Q ss_pred HH---H-HcCCEEEEEEecCh---------------HHHHhccCEEEEEeCCeEEEEe
Q 005423 266 KL---A-STGCTLLFTINQSS---------------TEVFGLFDRICLLSNGNTLFFG 304 (697)
Q Consensus 266 ~l---~-~~g~tvi~tih~~~---------------~~i~~~~D~v~vL~~G~iv~~G 304 (697)
+| + +.|.+||++.|... ..+...+|-++.|...+....|
T Consensus 501 ~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp HHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 66 3 46888888655321 1356778999998765543333
No 285
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.01 E-value=0.003 Score=64.31 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|+||||||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999864
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.00 E-value=0.0033 Score=60.21 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999998643
No 287
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.99 E-value=0.029 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
No 288
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.99 E-value=0.0031 Score=60.19 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.96 E-value=0.0038 Score=59.60 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.95 E-value=0.0036 Score=58.37 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005423 138 MTVIMGPAKSGKSTLLRAI 156 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L 156 (697)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.94 E-value=0.003 Score=61.57 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.|+||||||||||++.|....|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
No 292
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.89 E-value=0.027 Score=62.15 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..-+.|.||+|+|||||+++|+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999865
No 293
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.88 E-value=0.0046 Score=59.86 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.85 E-value=0.048 Score=60.03 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999976543
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.83 E-value=0.004 Score=59.26 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.83 E-value=0.0042 Score=59.89 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
No 297
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.80 E-value=0.0047 Score=60.83 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 298
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.039 Score=60.59 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=59.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.+.||+|+|||+|.++||+.... --+.+++.. +...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~----------------l~~~------------------ 245 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSE----------------FVHK------------------ 245 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGG----------------TCCS------------------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecch----------------hhcc------------------
Confidence 3344889999999999999999986421 112222211 0000
Q ss_pred ccccCCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGER-RRVRIARELVMRPHVLFIDEPL----------YHLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPT----------sgLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
.+..+++ =|-....|--..|.|+++||-- ++-|......+.++|..+- ..+..||++|+
T Consensus 246 ------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 246 ------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp ------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred ------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 0111111 1223344445679999999962 3345455556666666664 23567888888
Q ss_pred cCh
Q 005423 280 QSS 282 (697)
Q Consensus 280 ~~~ 282 (697)
+|.
T Consensus 320 ~~~ 322 (428)
T 4b4t_K 320 RAD 322 (428)
T ss_dssp CSS
T ss_pred Chh
Confidence 774
No 299
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.005 Score=59.74 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
No 300
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.78 E-value=0.019 Score=60.24 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..-+.|.||+|+|||+|+++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999999763
No 301
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.029 Score=61.69 Aligned_cols=122 Identities=23% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++|++..... =+.+++.. +..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~----------------l~~------------------- 253 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ----------------LVQ------------------- 253 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GCS-------------------
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh----------------hhh-------------------
Confidence 34448899999999999999999864211 11222111 100
Q ss_pred ccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
. .+..++ +-|-....|-...|.|||+||--+ +=|......+..+|..+- ..+..||.+|.
T Consensus 254 --~---~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 254 --M---YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp --S---CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred --c---ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 0 011122 223444555567899999999421 223344555666666663 23567778888
Q ss_pred cChHHHHhccCEEEEEeCCe---EEEEeCch
Q 005423 280 QSSTEVFGLFDRICLLSNGN---TLFFGETL 307 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~---iv~~G~~~ 307 (697)
+|.. .|.- ++..|| .++.+.|+
T Consensus 329 rp~~-----LD~A-llRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 329 RVDV-----LDPA-LLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp SCCC-----CCTT-TCSTTSEEEEEECCCCC
T ss_pred Cchh-----cCHh-HhcCCceeEEEEeCCcC
Confidence 8742 2221 234454 46666664
No 302
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.038 Score=60.08 Aligned_cols=99 Identities=26% Similarity=0.338 Sum_probs=58.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcccccc
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~~~~~ 218 (697)
+.|.||+|+|||+|.+++++..... -+.++|.. +.. ..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~----------------l~s-k~vG------------------ 224 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE----------------LVQ-KYIG------------------ 224 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GSC-SSTT------------------
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH----------------hhc-cccc------------------
Confidence 7899999999999999999864221 12222211 110 0111
Q ss_pred CCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----HcCCEEEEEEecCh
Q 005423 219 KNGLPCGER-RRVRIARELVMRPHVLFIDEPLYHL----------DSVSALLMMVTLKKLA----STGCTLLFTINQSS 282 (697)
Q Consensus 219 ~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPTsgL----------D~~~~~~i~~~L~~l~----~~g~tvi~tih~~~ 282 (697)
-+++ =|-....|--..|.|||+||--+-. |......+.++|..+- ..+..||.+|.+|.
T Consensus 225 -----ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 225 -----EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp -----HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred -----hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 1111 1223344445679999999965422 3445556677777764 23557788888774
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0052 Score=58.96 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998643
No 304
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0053 Score=59.79 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998653
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.72 E-value=0.0053 Score=57.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G 158 (697)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 306
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.041 Score=60.24 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++||+..... -+.+++.. +...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~----------------l~sk------------------ 255 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE----------------LIQK------------------ 255 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG----------------GCCS------------------
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH----------------hhhc------------------
Confidence 33448999999999999999999864221 12222211 1100
Q ss_pred ccccCCCCCHHHH-HHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGER-RRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGqr-qRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
.+-.+++ -|-....|--..|.|||+||--+ +=|......+..+|..+- ..+..||.+|.
T Consensus 256 ------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 256 ------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp ------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred ------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 0111222 23444455557799999999653 223445566667776664 23567888888
Q ss_pred cChHHHHhccCEEEEEeCCeE---EEEeCch
Q 005423 280 QSSTEVFGLFDRICLLSNGNT---LFFGETL 307 (697)
Q Consensus 280 ~~~~~i~~~~D~v~vL~~G~i---v~~G~~~ 307 (697)
+|.. .|.-+ +.-||. ++.+.|+
T Consensus 330 rpd~-----LDpAL-lRpGRfD~~I~v~lPd 354 (437)
T 4b4t_I 330 KIET-----LDPAL-IRPGRIDRKILFENPD 354 (437)
T ss_dssp CSTT-----CCTTS-SCTTTEEEEECCCCCC
T ss_pred Chhh-----cCHHH-hcCCceeEEEEcCCcC
Confidence 8742 33322 345543 5666664
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.70 E-value=0.0038 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
.+++|+|++|||||||++.|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987543
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.68 E-value=0.0052 Score=58.30 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0055 Score=59.11 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999975
No 310
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.62 E-value=0.0038 Score=67.13 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=32.6
Q ss_pred eEEEEeEEEEEecccccCcceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.++|++..+ ..+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 35666665443 2345778888766 9999999999999999988644
No 311
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.58 E-value=0.05 Score=59.44 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.58 E-value=0.0028 Score=61.91 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.57 E-value=0.0062 Score=59.31 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0071 Score=57.72 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 315
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.51 E-value=0.015 Score=61.10 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|.||+|+|||||++.|+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57999999999999999998764
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.51 E-value=0.0064 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 317
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.084 Score=58.06 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
|-.=+.|.||+|+|||+|.++|++..... -+.+++.. +... .+.|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~----------------l~sk-~~Ge------------- 258 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASG----------------IVDK-YIGE------------- 258 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------TCCS-SSSH-------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhh----------------hccc-cchH-------------
Confidence 44458899999999999999999864211 12222111 1100 0000
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HcCCEEEEEEec
Q 005423 215 FCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLA----STGCTLLFTINQ 280 (697)
Q Consensus 215 ~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~----~~g~tvi~tih~ 280 (697)
+...-|-....|-...|.|||+||--+ +-|......+..+|..+- ..+..||.+|.+
T Consensus 259 ---------se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 259 ---------SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp ---------HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred ---------HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 111223444556667899999999854 234455566667777764 235678888888
Q ss_pred ChHHHHhccCEEEEEeCCe---EEEEeCch
Q 005423 281 SSTEVFGLFDRICLLSNGN---TLFFGETL 307 (697)
Q Consensus 281 ~~~~i~~~~D~v~vL~~G~---iv~~G~~~ 307 (697)
|.. .|.- ++..|| .++.+.|+
T Consensus 330 p~~-----LDpA-llRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 330 PDT-----LDPA-LLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp TTS-----SCTT-TTSTTSEEEEECCCCCC
T ss_pred chh-----hCHH-HhCCCccceeeecCCcC
Confidence 742 3332 234554 35666664
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.45 E-value=0.024 Score=72.68 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=31.1
Q ss_pred cceeeeee--eEEcCCcEEEEECCCCCcHHHHHHHHH
Q 005423 123 DKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIA 157 (697)
Q Consensus 123 ~~iL~~vs--~~v~~Ge~~aIiG~sGsGKSTLl~~L~ 157 (697)
...|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678887 589999999999999999999999876
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0066 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998653
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.31 E-value=0.0094 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-.++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998653
No 321
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.27 E-value=0.021 Score=63.16 Aligned_cols=52 Identities=10% Similarity=-0.048 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEec
Q 005423 225 GERRRVRIARELVMRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQ 280 (697)
Q Consensus 225 GqrqRv~IA~aL~~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~tih~ 280 (697)
.|.+....+...+.+++++|+.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 4777777888888889887665544 4555443 44555544 467777776665
No 322
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.23 E-value=0.009 Score=57.83 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 323
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.19 E-value=0.01 Score=56.95 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 324
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.15 E-value=0.0075 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 325
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.14 E-value=0.0087 Score=61.25 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 326
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.062 Score=59.33 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCcc
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~~ 214 (697)
+-.=+.|.||+|+|||+|.++||+..... =+.+++.. +.. ..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~----------------L~s-k~---------------- 283 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSE----------------LVQ-KY---------------- 283 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG----------------GCC-CS----------------
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHH----------------hhc-cc----------------
Confidence 44458899999999999999999864221 11222111 110 00
Q ss_pred ccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH----HcCCEEEEEEe
Q 005423 215 FCQRKNGLPCGE-RRRVRIARELVMRPHVLFIDEPLYHL----------DSVSALLMMVTLKKLA----STGCTLLFTIN 279 (697)
Q Consensus 215 ~~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTsgL----------D~~~~~~i~~~L~~l~----~~g~tvi~tih 279 (697)
+-.++ +-|-....|-...|.|||+||--+-. +......+..+|..+- ..+..||.+|.
T Consensus 284 -------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 284 -------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp -------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred -------CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 11122 23445556667789999999986533 3344556666777664 22456777777
Q ss_pred cCh
Q 005423 280 QSS 282 (697)
Q Consensus 280 ~~~ 282 (697)
+|.
T Consensus 357 rpd 359 (467)
T 4b4t_H 357 RPN 359 (467)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 327
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.08 E-value=0.035 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+.-+.|.||+|+|||++++.|....+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 456688999999999999999987543
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.07 E-value=0.011 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.06 E-value=0.013 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
No 330
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.05 E-value=0.017 Score=60.84 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.5
Q ss_pred ceeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4566666555 7889999999999999999999885
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.02 E-value=0.013 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
=+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998643
No 332
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.99 E-value=0.012 Score=57.57 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 333
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.99 E-value=0.025 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999999766654
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.96 E-value=0.012 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998853
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.011 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.95 E-value=0.014 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.95 E-value=0.013 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.011 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998653
No 339
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.013 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.89 E-value=0.011 Score=56.27 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998653
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.014 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999985
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.86 E-value=0.011 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
No 343
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.84 E-value=0.011 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998864
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.83 E-value=0.015 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.83 E-value=0.013 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.82 E-value=0.014 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999864
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.82 E-value=0.014 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 348
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.81 E-value=0.013 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
No 349
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.81 E-value=0.0093 Score=64.46 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (697)
.+.-++|+|+||||||||++.|++.....+ +.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEE
Confidence 456789999999999999999998654433 556553
No 350
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.79 E-value=0.012 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998763
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.77 E-value=0.015 Score=55.38 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 352
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.74 E-value=0.015 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 353
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.72 E-value=0.022 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.71 E-value=0.015 Score=53.69 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999875
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.69 E-value=0.015 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
No 356
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.69 E-value=0.014 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
No 357
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.68 E-value=0.015 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998764
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.66 E-value=0.018 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++-.++|.|++||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999854
No 359
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.66 E-value=0.025 Score=60.81 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
|-.++|+|.+|+|||||++.|+|..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.66 E-value=0.018 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.64 E-value=0.016 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.63 E-value=0.016 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 363
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.63 E-value=0.024 Score=60.22 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999875
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.63 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.62 E-value=0.015 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999999764
No 366
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.58 E-value=0.017 Score=58.31 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 367
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.57 E-value=0.021 Score=53.22 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998853
No 368
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.54 E-value=0.026 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.|..++|+||+|+|||||...|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 58889999999999999999998763
No 369
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.53 E-value=0.015 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
No 370
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.52 E-value=0.016 Score=54.10 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999886
No 371
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.52 E-value=0.016 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 372
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.52 E-value=0.019 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 373
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.47 E-value=0.016 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 374
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.44 E-value=0.019 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999974
No 375
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.43 E-value=0.019 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999863
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.39 E-value=0.019 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999999764
No 377
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.39 E-value=0.034 Score=58.84 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..+.|.||+|+|||||++.++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987653
No 378
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.38 E-value=0.021 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
No 379
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.35 E-value=0.018 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
No 380
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.34 E-value=0.02 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 381
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.33 E-value=0.02 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 382
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.32 E-value=0.13 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998764
No 383
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.31 E-value=0.02 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999853
No 384
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.30 E-value=0.023 Score=53.82 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
++|+|++|+|||||++.|.|..+.
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 799999999999999999997653
No 385
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.29 E-value=0.021 Score=52.50 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.29 E-value=0.023 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999999999999999998654
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.28 E-value=0.013 Score=60.99 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 388
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.20 E-value=0.029 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 389
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.19 E-value=0.02 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999875
No 390
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.18 E-value=0.022 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 391
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.18 E-value=0.022 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 37999999999999999999753
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.17 E-value=0.025 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 393
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.16 E-value=0.023 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.15 E-value=0.022 Score=58.74 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 395
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.10 E-value=0.024 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
No 396
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.10 E-value=0.024 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
No 397
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.07 E-value=0.015 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G 158 (697)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999974
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.03 E-value=0.05 Score=64.99 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
..+.|.||+|+|||+|.++|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998764
No 399
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.02 E-value=0.021 Score=58.50 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
No 400
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.98 E-value=0.027 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 401
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.025 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 402
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.96 E-value=0.026 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.95 E-value=0.032 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+..++.|+||+||||+|..+.|+-.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998653
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.94 E-value=0.024 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 405
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.93 E-value=0.027 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998864
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.92 E-value=0.033 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.91 E-value=0.027 Score=55.16 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 408
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.91 E-value=0.027 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999999864
No 409
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.88 E-value=0.028 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999973
No 410
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.87 E-value=0.03 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 411
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.87 E-value=0.028 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999999854
No 412
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.87 E-value=0.028 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
No 413
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.026 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.83 E-value=0.023 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 415
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.81 E-value=0.031 Score=58.47 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.80 E-value=0.029 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999999753
No 417
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.79 E-value=0.035 Score=55.00 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.79 E-value=0.027 Score=56.46 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+|.+++|.|++||||||+++.|+..++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999987653
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.78 E-value=0.027 Score=59.95 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999865
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.78 E-value=0.03 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 421
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.027 Score=53.74 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998864
No 422
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.76 E-value=0.028 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 423
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.76 E-value=0.027 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999853
No 424
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.73 E-value=0.032 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 425
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.72 E-value=0.028 Score=60.52 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||+++|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
No 426
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.69 E-value=0.032 Score=53.00 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~ 159 (697)
++|+|++|+|||||++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999864
No 427
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.65 E-value=0.03 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999998753
No 428
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.64 E-value=0.031 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 429
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.037 Score=57.07 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+||||+++.++..+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998754
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.62 E-value=0.041 Score=57.90 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+++|+||+|||||||.+.|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999765
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.58 E-value=0.03 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37999999999999999999864
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.56 E-value=0.035 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.56 E-value=0.027 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999754
No 434
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.56 E-value=0.034 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.56 E-value=0.034 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.55 E-value=0.034 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999754
No 437
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.54 E-value=0.11 Score=54.03 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+.+-||+|+||||++++++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356777889999999999998765
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.54 E-value=0.034 Score=52.05 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355679999999999999999987653
No 439
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.52 E-value=0.032 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 440
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.52 E-value=0.018 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 441
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.51 E-value=0.033 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 442
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.032 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7999999999999999999854
No 443
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.49 E-value=0.034 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC--
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999998753
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.035 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999964
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.48 E-value=0.039 Score=55.67 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999876643
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.036 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.47 E-value=0.036 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.46 E-value=0.033 Score=58.83 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 449
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.46 E-value=0.035 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
No 450
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.45 E-value=0.035 Score=54.74 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.45 E-value=0.037 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 452
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.44 E-value=0.027 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998864
No 453
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.44 E-value=0.033 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
No 454
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.43 E-value=0.055 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.|.-++|.|+||+|||||...|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5888999999999999999988764
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.40 E-value=0.037 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 457
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.40 E-value=0.037 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998764
No 458
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.38 E-value=0.037 Score=57.39 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 459
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.36 E-value=0.041 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.|.+..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999854
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.34 E-value=0.033 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999975
No 461
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.035 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999988653
No 462
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.30 E-value=0.044 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++.|+||+||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999653
No 463
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.25 E-value=0.043 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 379999999999999999998654
No 464
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.038 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 465
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.20 E-value=0.033 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.19 E-value=0.047 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.++++.|++||||||+++.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999987653
No 467
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.17 E-value=0.046 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.047 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
|.+++|-|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999999997764
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.15 E-value=0.048 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~~ 162 (697)
+|.++++.|++||||||+++.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.13 E-value=0.14 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+.|.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 471
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.13 E-value=0.044 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 37999999999999999988753
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.08 E-value=0.033 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+|.+++|.|+.||||||+++.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999998765
No 473
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.08 E-value=0.054 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 135 ~Ge~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987653
No 474
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.07 E-value=0.05 Score=60.22 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.0
Q ss_pred eeeeeeeEEcCCcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 125 iL~~vs~~v~~Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 344579999999999999999999998754
No 475
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.06 E-value=0.044 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.06 E-value=0.044 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.03 E-value=0.04 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 478
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.03 E-value=0.041 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999863
No 479
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.95 E-value=0.031 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 480
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.88 E-value=0.045 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7999999999999999999853
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.85 E-value=0.043 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.=.++|+|++|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 335899999999999999999754
No 482
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.79 E-value=0.049 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.051 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999975
No 484
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.66 E-value=0.052 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.063 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999974
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.55 E-value=0.069 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 005423 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 136 Ge~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999999764
No 487
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.46 E-value=0.059 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 488
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.41 E-value=0.03 Score=54.52 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998653
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.40 E-value=0.021 Score=57.89 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
+.|.||+|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999854
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.064 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.27 E-value=0.061 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 005423 139 TVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 139 ~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
++|+|++|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 7999999999999999998753
No 492
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.23 E-value=0.078 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~~ 161 (697)
-.++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 493
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.19 E-value=0.031 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999876
No 494
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.17 E-value=0.044 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
=.++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999653
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.09 E-value=0.074 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
.+++|+||+|||||||.+.|+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998764
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.01 E-value=0.067 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.89 E-value=0.077 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGR 159 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~ 159 (697)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3799999999999999999875
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.80 E-value=0.073 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 005423 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 138 ~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.74 E-value=0.087 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 005423 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (697)
Q Consensus 137 e~~aIiG~sGsGKSTLl~~L~G~~ 160 (697)
-.+||+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998643
No 500
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.70 E-value=0.27 Score=57.61 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCccEEEEcCccccCCCCCHHHHHHHHHHcCCCc
Q 005423 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (697)
Q Consensus 134 ~~Ge~~aIiG~sGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~e~l~~~~~l~l~~ 213 (697)
+|.-.+.|.||+|+|||+|.++|+..... --+.+|.............+...+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~-----~~~~i~~s~~~~~~~~~~l~g~~~---------------------- 538 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTVSRLIGAPP---------------------- 538 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSSSSCCSSSCCCCS----------------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcC-----CEEEEechhhcchhhHhhhcCCCC----------------------
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE--------------EEEEEe
Q 005423 214 FFCQRKNGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT--------------LLFTIN 279 (697)
Q Consensus 214 ~~~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t--------------vi~tih 279 (697)
+..|-+..+.-....--..+.|||+||--.. ...+.+.|.++-++|.. +|++++
T Consensus 539 -------g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 539 -------GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -------CSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -------CCcCccccchHHHHHHhCCCcEEEEeCcccc-----CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Q ss_pred ----------------------------cChHHHHhccCEEEEEe
Q 005423 280 ----------------------------QSSTEVFGLFDRICLLS 296 (697)
Q Consensus 280 ----------------------------~~~~~i~~~~D~v~vL~ 296 (697)
.-..++..-+|.++.+.
T Consensus 607 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 651 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651 (758)
T ss_dssp SSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC
T ss_pred cchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeC
Done!