BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005424
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/504 (45%), Positives = 327/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDIYGFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDIYGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/504 (45%), Positives = 327/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDIYGFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDIYGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/504 (45%), Positives = 327/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDIYGFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDIYGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 325/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/503 (45%), Positives = 325/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 57 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 116
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 117 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 176
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 177 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 236
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 237 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 296
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 297 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 356
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 357 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 415 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 472
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLIT 556
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--EERKAYFIGVLDIEGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 57 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 116
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 117 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 176
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 177 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 236
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 237 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 296
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 297 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 356
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 357 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 415 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 472
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLIT 556
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 57 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 116
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 117 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 176
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 177 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 236
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 237 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 296
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 297 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 356
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 357 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 415 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 472
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLIT 556
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 57 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 116
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 117 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 176
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 177 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 236
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 237 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 296
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 297 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 356
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 357 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 414
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 415 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 472
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 473 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 532
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 533 PPGILALLDEQSVFPNATDNTLIT 556
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDIEGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/504 (45%), Positives = 326/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+N+SRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLIT 545
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/503 (45%), Positives = 325/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L + R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FK+EQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 324/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK +P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV +IN L + R I +LDI GFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVLC--QERKAYFIGVLDISGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/503 (44%), Positives = 323/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D ++F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--SERAAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FK+EQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/504 (45%), Positives = 324/504 (64%), Gaps = 19/504 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 45 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 104
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK +P+Y ++ +K + +PH++AI+D A R
Sbjct: 105 LRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 164
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 165 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 224
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 225 GNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 284
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D+E+F+I +A+DIV S+E+Q S+F
Sbjct: 285 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIF 344
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 345 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 402
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV +IN L + R I +LDI GFE F
Sbjct: 403 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVIKINNVLC--QERKAYFIGVLDISGFEIF 460
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FKLEQEEY+++ I+W +DF D++ ++L +
Sbjct: 461 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 520
Query: 600 SP-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 521 PPGILALLDEQSVFPNATDNTLIT 544
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/503 (44%), Positives = 322/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV + ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D E+F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--SERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FK+EQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/503 (44%), Positives = 322/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV + ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D ++F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--SERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FK+EQEEY+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/506 (44%), Positives = 324/506 (64%), Gaps = 19/506 (3%)
Query: 130 NWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189
++E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +N
Sbjct: 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105
Query: 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247
L RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R
Sbjct: 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS 165
Query: 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAF 301
M+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAF
Sbjct: 166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 225
Query: 302 GNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLC 361
GNAKT+RN+NSS FGK IEI F+ G ISGA+IQ++LLEKSRVV +E ER YHIFYQL
Sbjct: 226 GNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLL 285
Query: 362 VGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421
GA ++ L+L + + YL QS C I GV D ++F+I +A+DIV S+E+Q S+F
Sbjct: 286 AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIF 345
Query: 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGND 480
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 346 KIIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRD 403
Query: 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESF 540
+ Q+L + +++ +RDAL K++Y LF WLV++IN L R I +LDI GFE F
Sbjct: 404 LVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--SERKAYFIGVLDISGFEIF 461
Query: 541 DRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVP 599
NSFEQ CINY NE+LQQ FN H+FK+EQEEY+++ I+W +DF D++ ++L +
Sbjct: 462 KVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 521
Query: 600 SP-----LTQLRVFVLTTKGVLLCYI 620
P L + VF T L+ +
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKL 547
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/503 (44%), Positives = 322/503 (64%), Gaps = 19/503 (3%)
Query: 131 WELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190
+E G+I+S + +G+ +VK ++ NP DGV+D+ +LSYLNEP+V +NL
Sbjct: 47 YECGEIVSETSDSFTFKTSDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNL 106
Query: 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248
RY QD+IYT +G LVA+NPFK++P+Y ++ +K + +PH++AI+D A R M
Sbjct: 107 RVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM 166
Query: 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-----GSGI-EYEILKTNPILEAFG 302
+ D NQS++I+GESGAGKTE K +QYLA++ G GSG+ E +IL+ NPILEAFG
Sbjct: 167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFG 226
Query: 303 NAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCV 362
NAKT+RN+NSSRFGK IEI F+ G ISGA+IQ++LLEKSRVV + ER YHIFYQL
Sbjct: 227 NAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTSERNYHIFYQLLA 286
Query: 363 GAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422
GA ++ L+L + + YL QS C I GV D ++F+I +A+DIV S+E+Q S+F
Sbjct: 287 GATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFK 346
Query: 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLI-GCDIGELKLALSTRKMRVGNDT 481
++A +L LGN+ F E V + D+ + A + G + L+ AL ++ G D
Sbjct: 347 IIAGILHLGNIKFEKGAGEGAV--LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDL 404
Query: 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFD 541
+ Q+L + +++ +RDAL K++Y LF WLV++IN L R I +LDI GFE F
Sbjct: 405 VAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC--SERKAYFIGVLDISGFEIFK 462
Query: 542 RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPS 600
NSFEQ CINY NE+LQQ FN H+FK+EQE+Y+++ I+W +DF D++ ++L +
Sbjct: 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDLIDGRQP 522
Query: 601 P-----LTQLRVFVLTTKGVLLC 618
P L + VF T L+
Sbjct: 523 PGILALLDEQSVFPNATDNTLIT 545
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 314/488 (64%), Gaps = 15/488 (3%)
Query: 123 WFQLPNGNWELGKILS--ISGTESV-ISLPEGK----VLKVKSENLVS-ANPDILDGVDD 174
W P W+ ++L G + + + L EGK L K++ L NPDIL G +D
Sbjct: 14 WIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGEND 73
Query: 175 LMQLSYLNEPSVLYNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE 233
L LSYL+EP+VL+NL R+ +IYT G VLVAINP++++P+YG I AY +++
Sbjct: 74 LTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMG 133
Query: 234 S--PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG---IE 288
PH++A+ + A ++M RDE NQSII+SGESGAGKT +AK AM+Y A + G + +E
Sbjct: 134 DMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVE 193
Query: 289 YEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCA 348
++L +NPI+E+ GNAKT+RNDNSSRFGK IEI F + +I GAN++T+LLEKSRVV A
Sbjct: 194 EKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQA 253
Query: 349 EGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALD 408
E ER YHIFYQLC A + L L +A + Y +Q I+G+DDA++ +A
Sbjct: 254 EEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACT 313
Query: 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKL 468
++ +S Q +F +LA +L LGNV F D+++ P + L L+G D E+
Sbjct: 314 LLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAH 373
Query: 469 ALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 528
L RK+ +T ++ ++ A + RDALAK IYA LF W+V+ +NK+L ++
Sbjct: 374 WLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHS-F 432
Query: 529 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDN 588
I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W +DF DN
Sbjct: 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDN 492
Query: 589 KDCLNLFE 596
+ C+NL E
Sbjct: 493 QPCINLIE 500
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 314/488 (64%), Gaps = 15/488 (3%)
Query: 123 WFQLPNGNWELGKILS--ISGTESV-ISLPEGK----VLKVKSENLVS-ANPDILDGVDD 174
W P W+ ++L G + + + L EGK L K++ L NPDIL G +D
Sbjct: 14 WIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGEND 73
Query: 175 LMQLSYLNEPSVLYNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE 233
L LSYL+EP+VL+NL R+ +IYT G VLVAINP++++P+YG I AY +++
Sbjct: 74 LTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMG 133
Query: 234 S--PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG---IE 288
PH++A+ + A ++M RDE NQSII+SGESGAGKT +AK AM+Y A + G + +E
Sbjct: 134 DMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVE 193
Query: 289 YEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCA 348
++L +NPI+E+ GNAKT+RNDNSSRFGK IEI F + +I GAN++T+LLEKSRVV A
Sbjct: 194 EKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQA 253
Query: 349 EGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALD 408
E ER YHIFYQLC A + L L +A + Y +Q I+G+DDA++ +A
Sbjct: 254 EEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACT 313
Query: 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKL 468
++ +S Q +F +LA +L LGNV F D+++ P + L L+G D E+
Sbjct: 314 LLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAH 373
Query: 469 ALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 528
L RK+ +T ++ ++ A + RDALAK IYA LF W+V+ +NK+L ++
Sbjct: 374 WLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHS-F 432
Query: 529 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDN 588
I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W +DF DN
Sbjct: 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDN 492
Query: 589 KDCLNLFE 596
+ C+NL E
Sbjct: 493 QPCINLIE 500
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 314/488 (64%), Gaps = 15/488 (3%)
Query: 123 WFQLPNGNWELGKILS--ISGTESV-ISLPEGK----VLKVKSENLVS-ANPDILDGVDD 174
W P W+ ++L G + + + L EGK L K++ L NPDIL G +D
Sbjct: 14 WIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGEND 73
Query: 175 LMQLSYLNEPSVLYNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI- 232
L LSYL+EP+VL+NL R+ +IYT G VLVAINP++++P+YG I AY +++
Sbjct: 74 LTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMG 133
Query: 233 -ESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG---IE 288
PH++A+ + A ++M RDE NQSII+SGESGAGKT +AK AM+Y A + G + +E
Sbjct: 134 DMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVE 193
Query: 289 YEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCA 348
++L +NPI+E+ GNAKT+RNDNSSRFGK IEI F + +I GAN++T+LLEKSRVV A
Sbjct: 194 EKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQA 253
Query: 349 EGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALD 408
E ER YHIFYQLC A + L L +A + Y +Q I+G+DDA++ +A
Sbjct: 254 EEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACT 313
Query: 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKL 468
++ +S Q +F +LA +L LGNV F D+++ P + L L+G D E+
Sbjct: 314 LLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAH 373
Query: 469 ALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 528
L RK+ +T ++ ++ A + RDALAK IYA LF W+V+ +NK+L ++
Sbjct: 374 WLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHS-F 432
Query: 529 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDN 588
I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W +DF DN
Sbjct: 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDN 492
Query: 589 KDCLNLFE 596
+ C+NL E
Sbjct: 493 QPCINLIE 500
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/505 (40%), Positives = 303/505 (60%), Gaps = 22/505 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T ++ GKK W + +I S G E + + + VK +++ S NP
Sbjct: 20 TAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 77
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVLYNL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 78 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 137
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 138 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 197
Query: 285 ----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA+I
Sbjct: 198 KDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 257
Query: 335 QTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE-KLNLMSAKEYKYLRQSSCYSING 393
+T+LLEKSRV ER YHIFYQ+C A P L + L + Y ++ Q C +++
Sbjct: 258 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQ-GCLTVDN 316
Query: 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLI 453
+DD E+F++ EA DI+ +KE+++S+F A++L +G + F E E
Sbjct: 317 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE 376
Query: 454 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
VA L G + G+L AL K++VG + + + ++Q ++ ALAKS+Y +F WLV +
Sbjct: 377 KVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRR 436
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
+NK+L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEEY
Sbjct: 437 VNKTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEY 495
Query: 574 IQDGIDWAKVDFE-DNKDCLNLFEK 597
++GI W +DF D + C++L EK
Sbjct: 496 KKEGIAWEFIDFGMDLQMCIDLIEK 520
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/505 (40%), Positives = 303/505 (60%), Gaps = 22/505 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T ++ GKK W + +I S G E + + + VK +++ S NP
Sbjct: 21 TAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 78
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVLYNL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 79 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 138
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 139 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 198
Query: 285 ----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA+I
Sbjct: 199 KDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 258
Query: 335 QTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE-KLNLMSAKEYKYLRQSSCYSING 393
+T+LLEKSRV ER YHIFYQ+C A P L + L + Y ++ Q C +++
Sbjct: 259 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQ-GCLTVDN 317
Query: 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLI 453
+DD E+F++ EA DI+ +KE+++S+F A++L +G + F E E
Sbjct: 318 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE 377
Query: 454 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
VA L G + G+L AL K++VG + + + ++Q ++ ALAKS+Y +F WLV +
Sbjct: 378 KVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRR 437
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
+NK+L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEEY
Sbjct: 438 VNKTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEY 496
Query: 574 IQDGIDWAKVDFE-DNKDCLNLFEK 597
++GI W +DF D + C++L EK
Sbjct: 497 KKEGIAWEFIDFGMDLQMCIDLIEK 521
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/505 (40%), Positives = 303/505 (60%), Gaps = 22/505 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T ++ GKK W + +I S G E + + + VK +++ S NP
Sbjct: 25 TAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 82
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVLYNL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 142
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 143 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 202
Query: 285 ----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA+I
Sbjct: 203 KDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 335 QTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE-KLNLMSAKEYKYLRQSSCYSING 393
+T+LLEKSRV ER YHIFYQ+C A P L + L + Y ++ Q C +++
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQ-GCLTVDN 321
Query: 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLI 453
+DD E+F++ EA DI+ +KE+++S+F A++L +G + F E E
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE 381
Query: 454 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
VA L G + G+L AL K++VG + + + ++Q ++ ALAKS+Y +F WLV +
Sbjct: 382 KVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRR 441
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
+NK+L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEEY
Sbjct: 442 VNKTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEY 500
Query: 574 IQDGIDWAKVDFE-DNKDCLNLFEK 597
++GI W +DF D + C++L EK
Sbjct: 501 KKEGIAWEFIDFGMDLQMCIDLIEK 525
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/505 (40%), Positives = 303/505 (60%), Gaps = 22/505 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T ++ GKK W + +I S G E + + + VK +++ S NP
Sbjct: 25 TAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 82
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVLYNL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 142
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 143 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 202
Query: 285 ----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA+I
Sbjct: 203 KDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 335 QTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE-KLNLMSAKEYKYLRQSSCYSING 393
+T+LLEKSRV ER YHIFYQ+C A P L + L + Y ++ Q C +++
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQ-GCLTVDN 321
Query: 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLI 453
+DD E+F++ EA DI+ +KE+++S+F A++L +G + F E E
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE 381
Query: 454 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
VA L G + G+L AL K++VG + + + ++Q ++ ALAKS+Y +F WLV +
Sbjct: 382 KVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRR 441
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
+NK+L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEEY
Sbjct: 442 VNKTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEY 500
Query: 574 IQDGIDWAKVDFE-DNKDCLNLFEK 597
++GI W +DF D + C++L EK
Sbjct: 501 KKEGIAWEFIDFGMDLQMCIDLIEK 525
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/505 (40%), Positives = 303/505 (60%), Gaps = 22/505 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T ++ GKK W + +I S G E + + + VK +++ S NP
Sbjct: 25 TAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 82
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVLYNL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 142
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 143 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 202
Query: 285 ----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA+I
Sbjct: 203 KDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADI 262
Query: 335 QTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE-KLNLMSAKEYKYLRQSSCYSING 393
+T+LLEKSRV ER YHIFYQ+C A P L + L + Y ++ Q C +++
Sbjct: 263 ETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQ-GCLTVDN 321
Query: 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLI 453
+DD E+F++ EA DI+ +KE+++S+F A++L +G + F E E
Sbjct: 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE 381
Query: 454 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
VA L G + G+L AL K++VG + + + ++Q ++ ALAKS+Y +F WLV +
Sbjct: 382 KVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRR 441
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
+NK+L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEEY
Sbjct: 442 VNKTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEY 500
Query: 574 IQDGIDWAKVDFE-DNKDCLNLFEK 597
++GI W +DF D + C++L EK
Sbjct: 501 KKEGIAWEFIDFGMDLQMCIDLIEK 525
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/506 (40%), Positives = 301/506 (59%), Gaps = 23/506 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T + GKK W P + +I S G E + + + VK +++ NP
Sbjct: 25 TAPFDGKK--NCWVPDPKEGFASAEIQSSKGEEITVKIVSDNSTRTVKKDDIQQMNPPKF 82
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVL NL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 83 EKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 142
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG---- 283
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE+ K + Y A +
Sbjct: 143 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVIMYFARVAANLYK 202
Query: 284 ----------GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAN 333
S +E +I++ NP+LEAFGNAKT RN+NSSRFGK I IHF TGKI+GA+
Sbjct: 203 QKEEPVPNLRASNLEDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHFGPTGKIAGAD 262
Query: 334 IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSIN 392
I+T+LLEKSRV ER YHIFYQ+C A P L E + + + Y ++ Q C +++
Sbjct: 263 IETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQ-GCLTVD 321
Query: 393 GVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGL 452
+DD E+F++ EA DI+ +KE++ S+F A++L +G + F E E
Sbjct: 322 NIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGTAEA 381
Query: 453 ITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVE 512
VA L G + G+L AL K++VG + + + L Q ++ AL+KS+Y +F WLV+
Sbjct: 382 EKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMFNWLVK 441
Query: 513 QINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEE 572
++N++L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQEE
Sbjct: 442 RVNRTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQEE 500
Query: 573 YIQDGIDWAKVDFE-DNKDCLNLFEK 597
Y ++GI W +DF D + C++L EK
Sbjct: 501 YKKEGIQWEFIDFGMDLQMCIDLIEK 526
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 301/507 (59%), Gaps = 24/507 (4%)
Query: 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDIL 169
T + GKK W P + +I S G E + + + VK +++ NP
Sbjct: 25 TAPFDGKK--NCWVPDPKEGFASAEIQSSKGEEITVKIVSDNSTRTVKKDDIQQMNPPKF 82
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+ ++D+ ++YLNE SVL NL RY +IYT +G +A+NP++++P+Y + I Y
Sbjct: 83 EKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRG 142
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--- 284
K K+ PH++++ D A + M+ D NQS +I+GESGAGKTE K + YLA +
Sbjct: 143 KRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKK 202
Query: 285 ------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGA 332
+E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IHF TGKI+GA
Sbjct: 203 KTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGA 262
Query: 333 NIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSI 391
+I+T+LLEKSRV ER YHIFYQ+C A P L E + + + Y ++ Q C ++
Sbjct: 263 DIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNEVMLITPDSGLYSFINQ-GCLTV 321
Query: 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEG 451
+ +DD E+F++ EA DI+ +KE++ S+F A++L +G + F E E
Sbjct: 322 DNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGTAE 381
Query: 452 LITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLV 511
VA L G + G+L AL K++VG + + + L Q ++ AL+KS+Y +F WLV
Sbjct: 382 AEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQVINSVGALSKSLYDRMFNWLV 441
Query: 512 EQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQE 571
+++N++L +R I +LDI GFE FD NSFEQ CINY NERLQQ FN H+F LEQE
Sbjct: 442 KRVNRTLDTKAKRN-YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFVLEQE 500
Query: 572 EYIQDGIDWAKVDFE-DNKDCLNLFEK 597
EY ++GI W +DF D + C++L EK
Sbjct: 501 EYKKEGIQWEFIDFGMDLQMCIDLIEK 527
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/480 (41%), Positives = 290/480 (60%), Gaps = 18/480 (3%)
Query: 134 GKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYR 193
KI+S G + GK + VK + ++ NP D ++D+ L++L+EP+VLYNL R
Sbjct: 49 AKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDR 108
Query: 194 YKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSK--SIESPHVYAITDTAIREMIRD 251
Y MIYT +G V +NP+K +P+Y + AY+ K S PH+++I+D A + M+ D
Sbjct: 109 YGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTD 168
Query: 252 EVNQSIIISGESGAGKTETAKIAMQY---LAALG---------GGSGIEYEILKTNPILE 299
NQSI+I+GESGAGKT K +QY +AA+G G +E +I++ NP LE
Sbjct: 169 RENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALE 228
Query: 300 AFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQ 359
AFGNAKT RNDNSSRFGK I IHF TGK++ A+I+T+LLEKSRV+ + ER YHIFYQ
Sbjct: 229 AFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQ 288
Query: 360 LCVGAPPALREKLNLMSAK-EYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQE 418
+ P L + L + + +Y ++ Q ++ +DDAE+ A D++ + E++
Sbjct: 289 ILSNKKPELLDMLLITNNPYDYAFISQGET-TVASIDDAEELMATDNAFDVLGFTSEEKN 347
Query: 419 SVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478
S++ + A++ GN+ F + E EP E A L+G + +L L +++VG
Sbjct: 348 SMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVG 407
Query: 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFE 538
N+ + + + Q ALAK++Y +F W+V +IN +L + R I +LDI GFE
Sbjct: 408 NEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQ-YFIGVLDIAGFE 466
Query: 539 SFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK 597
FD NSFEQ CIN+ NE+LQQ FN H+F LEQEEY ++GI+W +DF D + C++L EK
Sbjct: 467 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK 526
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/488 (41%), Positives = 292/488 (59%), Gaps = 19/488 (3%)
Query: 127 PNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSV 186
P ++ G I S G + + G+ L VK + + S NP D ++D+ +++L+EP+V
Sbjct: 40 PKESFVKGTIQSKEGGKVTVKTEGGETLTVKEDQVFSMNPPKYDKIEDMAMMTHLHEPAV 99
Query: 187 LYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYAITDTA 244
LYNL RY MIYT +G V +NP+K +P+Y + AY+ K + PH+++I+D A
Sbjct: 100 LYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNA 159
Query: 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--------SG-----IEYEI 291
+ M+ D NQSI+I+GESGAGKT K +QY A + SG +E +I
Sbjct: 160 YQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQI 219
Query: 292 LKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351
+ NP+LEAFGNAKT RNDNSSRFGK I IHF TGK++ A+I+T+LLEKSRV E
Sbjct: 220 ISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAE 279
Query: 352 RAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIV 410
R+YHIFYQ+ P L + L + + +Y Y+ Q ++ +DD E+ A+DI+
Sbjct: 280 RSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSQGEI-TVPSIDDQEELMATDSAIDIL 338
Query: 411 HVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLAL 470
S +++ +++ + AV+ GN+ F E EP E A L+G + EL AL
Sbjct: 339 GFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKAL 398
Query: 471 STRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530
+++VGN+ + + T+SQ ++ ALAK++Y +F W+V +IN+ L + R I
Sbjct: 399 CYPRVKVGNEFVTKGQTVSQVHNSVGALAKAVYEKMFLWMVIRINQQLDTKQPRQ-YFIG 457
Query: 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNK 589
+LDI GFE FD NSFEQ CIN+ NE+LQQ FN H+F LEQEEY ++GI+W +DF D
Sbjct: 458 VLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLA 517
Query: 590 DCLNLFEK 597
C+ L EK
Sbjct: 518 ACIELIEK 525
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/500 (40%), Positives = 290/500 (58%), Gaps = 22/500 (4%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYL 181
W +E I G E + L E GK + + +++ NP V+D+ +L+ L
Sbjct: 35 WVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCL 94
Query: 182 NEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYA 239
NE SVL+NL RY +IYT +G V INP+K++P+Y I+ YK K PH+YA
Sbjct: 95 NEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYA 154
Query: 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSG------------- 286
I DTA R M++D +QSI+ +GESGAGKTE K +QYLA +
Sbjct: 155 IADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSF 214
Query: 287 ----IEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
+E ++L+ NPILEAFGNAKT +NDNSSRFGK I I+F TG I GANI+T+LLEKS
Sbjct: 215 SYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKS 274
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402
R ++ A+ ER +HIFY L GA +R L L Y +L I D E F+
Sbjct: 275 RAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHV-PIPAQQDDEMFQE 333
Query: 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCD 462
+EA+ I+ ++E+Q S+ ++++VL LGN+ F N + + V L+G +
Sbjct: 334 TLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGIN 393
Query: 463 IGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK 522
+ + ++ T +++VG D + + T QA +ALAK+ + LF W++ ++NK+L K
Sbjct: 394 VTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTK 453
Query: 523 RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582
R+ + ILDI GFE F+ NSFEQ CINY NE+LQQ FN +F LEQEEY ++GI+W
Sbjct: 454 RQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF 513
Query: 583 VDFE-DNKDCLNLFEKVPSP 601
+DF D + C+ L E+ +P
Sbjct: 514 IDFGLDLQPCIELIERPTNP 533
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/487 (39%), Positives = 279/487 (57%), Gaps = 19/487 (3%)
Query: 127 PNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSV 186
P ++ G I S G + G+ L VK + + S NP D ++D+ +++L+EP+V
Sbjct: 40 PKQSFVXGTIQSXEGGXVTVXTEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTHLHEPAV 99
Query: 187 LYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYAITDTA 244
LYNL RY MIYT +G V +NP+ +P+Y + AY+ K + PH+++I+D A
Sbjct: 100 LYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNA 159
Query: 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--------SG-----IEYEI 291
+ M+ D NQSI+I+GESGAGKT +QY A + SG +E +I
Sbjct: 160 YQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQI 219
Query: 292 LKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351
+ NP+LEAFGNA T RNDNSSRFG I IHF TGK++ A+I+T+LLE SRV E
Sbjct: 220 ISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAE 279
Query: 352 RAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIV 410
R+YHIFYQ+ P L + L + + +Y Y+ + ++ +DD E+ A+DI+
Sbjct: 280 RSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSIDDQEELMATDSAIDIL 338
Query: 411 HVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLAL 470
S ++ +++ + AV+ GN+ F E EP E A L+G + EL AL
Sbjct: 339 GFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKAL 398
Query: 471 STRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530
++ VGN+ + T+S+ ++ ALA ++Y +F W+V +IN+ L + R I
Sbjct: 399 CYPRVGVGNEAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQLDTKQPRQ-YFIG 457
Query: 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNK 589
+LDI GFE FD NSFEQ CIN+ NE LQQ FN H+F LEQEEY +GI+W +DF D
Sbjct: 458 VLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLA 517
Query: 590 DCLNLFE 596
C+ L E
Sbjct: 518 ACIELIE 524
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/487 (39%), Positives = 279/487 (57%), Gaps = 19/487 (3%)
Query: 127 PNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSV 186
P ++ G I S G + G+ L VK + + S NP D ++D+ +++L+EP+V
Sbjct: 43 PKQSFVXGTIQSXEGGXVTVXTEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTHLHEPAV 102
Query: 187 LYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIES--PHVYAITDTA 244
LYNL RY MIYT +G V +NP+ +P+Y + AY+ K + PH+++I+D A
Sbjct: 103 LYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNA 162
Query: 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--------SG-----IEYEI 291
+ M+ D NQSI+I+GESGAGKT +QY A + SG +E +I
Sbjct: 163 YQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQI 222
Query: 292 LKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351
+ NP+LEAFGNA T RNDNSSRFG I IHF TGK++ A+I+T+LLE SRV E
Sbjct: 223 ISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAE 282
Query: 352 RAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIV 410
R+YHIFYQ+ P L + L + + +Y Y+ + ++ +DD E+ A+DI+
Sbjct: 283 RSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEI-TVPSIDDQEELMATDSAIDIL 341
Query: 411 HVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLAL 470
S ++ +++ + AV+ GN+ F E EP E A L+G + EL AL
Sbjct: 342 GFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKAL 401
Query: 471 STRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530
++ VGN+ + T+S+ ++ ALA ++Y +F W+V +IN+ L + R I
Sbjct: 402 CYPRVGVGNEAVTXGETVSEVHNSVGALAXAVYEXMFLWMVIRINQQLDTKQPRQ-YFIG 460
Query: 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNK 589
+LDI GFE FD NSFEQ CIN+ NE LQQ FN H+F LEQEEY +GI+W +DF D
Sbjct: 461 VLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLA 520
Query: 590 DCLNLFE 596
C+ L E
Sbjct: 521 ACIELIE 527
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 349 bits (895), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 192/464 (41%), Positives = 277/464 (59%), Gaps = 15/464 (3%)
Query: 151 GKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAI 210
G+ L++ + + NP +D+ +L+ LNE SVL+NL RY +IYT +G V I
Sbjct: 41 GRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVI 100
Query: 211 NPFKKVPLYGNYYIEAYKSKSIES--PHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268
NP+K++P+Y +E Y+ K PHVYA+T+ A R M++D +QSI+ +GESGAGKT
Sbjct: 101 NPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKT 160
Query: 269 ETAKIAMQYLAAL----------GGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318
E K +QYLA + G +E ++L+ NPILEAFGNAKT +NDNSSRFGK
Sbjct: 161 ENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKF 220
Query: 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAK 378
I I+F G I GANI+T+LLEKSR ++ A+ E ++HIFYQL GA L+ L L
Sbjct: 221 IRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCS 280
Query: 379 EYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI 438
Y++L S + E F+ +E+L ++ S E+ S+ M++AVL GN++
Sbjct: 281 HYRFLTNGPSSSPG--QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRE 338
Query: 439 DNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDAL 498
N + + + +L+G + + AL T +++VG D + + T QA +AL
Sbjct: 339 RNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEAL 398
Query: 499 AKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558
AK+ Y LF WLV ++N++L R+ + ILDI GFE F NSFEQ CINY NE+LQ
Sbjct: 399 AKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQ 458
Query: 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPSP 601
Q FN +F LEQEEY ++GI W +DF D + C++L E+ +P
Sbjct: 459 QLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANP 502
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 347 bits (891), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/517 (38%), Positives = 297/517 (57%), Gaps = 27/517 (5%)
Query: 104 TDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKV-KSENLV 162
T ++ + TS K W P+ + +I S G E + + + +V K +++
Sbjct: 16 TRQKLMEATSIPFDGKKNCWVPDPDFGFVGAEIQSTKGDEVTVKTDKTQETRVVKKDDIG 75
Query: 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNY 222
NP + D+ L++LNE S+L+NL RY+ IYT +G +AINP++++P+Y
Sbjct: 76 QRNPPKFEMNMDMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYRRLPIYTQG 135
Query: 223 YIEAYKSKSIES--PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280
++ Y+ K PH+++I D A + M++D NQS++I+GESGAGKTE K +QY A
Sbjct: 136 LVDKYRGKRRAEMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVIQYFAL 195
Query: 281 LGGG------------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322
+ +E +I++ NP+LEA+GNAKT+RN+NSSRFGK I IH
Sbjct: 196 VAASLAGKKDKKEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIH 255
Query: 323 FSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREK-LNLMSAKEYK 381
F GKI+GA+I+T+LLEKSRV ER YHIFYQL A P EK L + Y
Sbjct: 256 FGTQGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQLLSPAFPENIEKILAVPDPGLYG 315
Query: 382 YLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE 441
++ Q + +++G+DD E+ + A D++ + E++ S++ +L LG + + +
Sbjct: 316 FINQGTL-TVDGIDDEEEMGLTDTAFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRGEQ 374
Query: 442 NHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501
+ A+ VA L+G + G+L L K++VG + + Q Q T++ ALAKS
Sbjct: 375 AEADGTAEAE--KVAFLLGVNAGDLLKCLLKPKIKVGTEYVTQGRNKDQVTNSIAALAKS 432
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y +F WLV ++N++L +R I +LDI GFE FD NSFEQ CINY NERLQQ F
Sbjct: 433 LYDRMFNWLVRRVNQTLDTKAKRQ-FFIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFF 491
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK 597
N H+F LEQEEY ++GI W +DF D + C+ L EK
Sbjct: 492 NHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIEK 528
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 298/489 (60%), Gaps = 18/489 (3%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 8 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 67 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 126
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 186
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 187 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 246
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKE 415
IFY+LC GA +RE+L+L S ++YL + +DD F + A+ + + E
Sbjct: 247 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDE 306
Query: 416 DQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALST 472
++ +F ++A VL LGN+ F + + +++ + + L A+L+G D +L+++L+T
Sbjct: 307 EKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTT 366
Query: 473 RKMRV----GNDTIVQ-NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGR 527
R M T+++ L + QA + RDALAK++Y+ LF+ +V ++N+ +
Sbjct: 367 RVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSY 424
Query: 528 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFED 587
I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K EQE Y ++G+ +V + D
Sbjct: 425 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD 484
Query: 588 NKDCLNLFE 596
N+DC++L E
Sbjct: 485 NQDCIDLIE 493
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 298/489 (60%), Gaps = 18/489 (3%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 7 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 66 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 125
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 126 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 185
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 186 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 245
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKE 415
IFY+LC GA +RE+L+L S ++YL + +DD F + A+ + + E
Sbjct: 246 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDE 305
Query: 416 DQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALST 472
++ +F ++A VL LGN+ F + + +++ + + L A+L+G D +L+++L+T
Sbjct: 306 EKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTT 365
Query: 473 RKMRV----GNDTIVQ-NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGR 527
R M T+++ L + QA + RDALAK++Y+ LF+ +V ++N+ +
Sbjct: 366 RVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSY 423
Query: 528 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFED 587
I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K EQE Y ++G+ +V + D
Sbjct: 424 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD 483
Query: 588 NKDCLNLFE 596
N+DC++L E
Sbjct: 484 NQDCIDLIE 492
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 344 bits (883), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/489 (39%), Positives = 297/489 (60%), Gaps = 18/489 (3%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 7 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 66 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 125
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I I++ N
Sbjct: 126 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIYDRIVEAN 185
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 186 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 245
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKE 415
IFY+LC GA +RE+L+L S ++YL + +DD F + A+ + + E
Sbjct: 246 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDE 305
Query: 416 DQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALST 472
++ +F ++A VL LGN+ F + + +++ + + L A+L+G D +L+++L+T
Sbjct: 306 EKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTT 365
Query: 473 RKMRV----GNDTIVQ-NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGR 527
R M T+++ L + QA + RDALAK++Y+ LF+ +V ++N+ +
Sbjct: 366 RVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPF--ETSSY 423
Query: 528 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFED 587
I +LDI GFE F+ NSFEQFCINY NE+LQQ FN + K EQE Y ++G+ +V + D
Sbjct: 424 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVD 483
Query: 588 NKDCLNLFE 596
N+DC++L E
Sbjct: 484 NQDCIDLIE 492
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 338 bits (868), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 7 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 66 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 125
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 126 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 185
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 186 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 245
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL-RQSSCYSIN---------------------- 392
IFY+LC GA +RE+L+L S ++YL R + Y N
Sbjct: 246 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 305
Query: 393 ---GVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
G+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 306 KDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 365
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 366 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 425
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 426 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 483
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 484 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 518
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 338 bits (866), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 4 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 62
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 63 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 122
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 123 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 182
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 183 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 242
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 243 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 302
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 303 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 362
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 363 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 422
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 423 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 480
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 481 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 515
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 338 bits (866), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 17 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 75
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 76 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 135
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 136 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 195
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 196 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 255
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 256 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 315
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 316 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 375
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 376 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 435
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 436 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 493
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 494 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 528
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 7 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 66 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 125
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 126 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 185
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 186 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 245
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 246 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 305
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 306 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 365
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 366 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 425
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 426 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 483
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 484 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 518
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 8 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 67 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 126
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 186
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 187 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 246
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 247 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 306
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 307 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 366
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 367 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 426
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 427 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 484
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 485 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 519
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 337 bits (864), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 302/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 8 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 67 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 126
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 186
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 187 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 246
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 247 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 306
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 307 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 366
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 367 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 426
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 427 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 484
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 485 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 519
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 301/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 5 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 63
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 64 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 123
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I I++ N
Sbjct: 124 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIYDRIVEAN 183
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 184 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 243
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 244 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 303
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 304 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 363
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 364 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 423
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 424 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 481
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 482 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 516
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 335 bits (860), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 196/515 (38%), Positives = 301/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ G +S+ P +GK + A D V+D L
Sbjct: 17 WAPHPTDGFQVGNIVR-RGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 75
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 76 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 135
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I+ I++ N
Sbjct: 136 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEAN 195
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 196 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 255
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 256 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 315
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 316 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 375
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 376 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 435
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 436 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 493
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 494 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 528
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 335 bits (860), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 301/515 (58%), Gaps = 44/515 (8%)
Query: 123 WFQLPNGNWELGKILSISGTESVISLP---EGKVLKVKSENLVSANPDILDGVDDLMQLS 179
W P +++G I+ I G +S+ P +GK + A D V+D L
Sbjct: 7 WAPHPTDGFQVGNIVDI-GPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 180 YLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIES--PH 236
YLNE ++L+N+ RY +D IYT +L+A+NP+ +P +Y + I++Y+ KS+ + PH
Sbjct: 66 YLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPH 125
Query: 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA-ALGGGSGIEYEILKTN 295
V+AI D A R+M +++QSII+SGESGAGKTE K ++YL + G G I I++ N
Sbjct: 126 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIYDRIVEAN 185
Query: 296 PILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYH 355
P+LEAFGNAKT RN+NSSRFGK +EIHF+E + G + +LLEKSR+ + ER YH
Sbjct: 186 PLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 245
Query: 356 IFYQLCVGAPPALREKLNLMSAKEYKYL--------------------RQSSCYSING-- 393
IFY+LC GA +RE+L+L S ++YL R+S Y G
Sbjct: 246 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSL 305
Query: 394 ----VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEP 446
+DD F + A+ + + E++ +F ++A VL LGN+ F + + +++
Sbjct: 306 KDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKN 365
Query: 447 VADEGLITVAKLIGCDIGELKLALSTRKMRV----GNDTIVQ-NLTLSQATDTRDALAKS 501
+ + L A+L+G D +L+++L+TR M T+++ L + QA + RDALAK+
Sbjct: 366 KSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 425
Query: 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHF 561
+Y+ LF+ +V ++N+ + I +LDI GFE F+ NSFEQFCINY NE+LQQ F
Sbjct: 426 VYSHLFDHVVNRVNQCFPF--ETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFF 483
Query: 562 NRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFE 596
N + K EQE Y ++G+ +V + DN+DC++L E
Sbjct: 484 NERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIE 518
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 273/452 (60%), Gaps = 17/452 (3%)
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+GV D + L+ + E + + NL R+K D IYT G V+++ NPFK + +Y I+AY
Sbjct: 8 EGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNG 67
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG---- 283
+ K PH+YA+ + A R M + + NQ +IISGESGAGKTE +K MQ+L +
Sbjct: 68 RYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSP 127
Query: 284 -GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
G I +L +NP+LEAFGNAKT RNDNSSRFGK +E+ F+ G G I +LLEKS
Sbjct: 128 NGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKS 187
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQFR 401
RVV +GER++HIFYQ+ G + ++L L +A Y+YL++S C+ ++ +DD+ +F+
Sbjct: 188 RVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFK 247
Query: 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE----NHVEPVADEGLITVAK 457
I+V+A++ + + + DQ S++ +LAA+L +GN++F + V+ + L A
Sbjct: 248 IIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAAS 307
Query: 458 LIGCDIGELKLALSTRKMRVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
+ D L +AL R + G + I + +QA +RDALAK++Y LF WLV +
Sbjct: 308 CLKTDQQSLSIALCYRSISTGVGKRCEVISVPMDCNQAAYSRDALAKALYERLFNWLVSK 367
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
IN + + G I ILDIYGFE F NSFEQ IN+ NE+LQQ F K EQEEY
Sbjct: 368 INTIINCTTEK-GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEY 426
Query: 574 IQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQL 605
+++GI+W +++ +NK L EK P L L
Sbjct: 427 VREGIEWKNIEYFNNKPICELIEKKPIGLISL 458
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 332 bits (850), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 272/452 (60%), Gaps = 17/452 (3%)
Query: 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAY-- 227
+GV D + L+ + E + + NL R+K D IYT G V+++ NPFK + +Y I+AY
Sbjct: 8 EGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNG 67
Query: 228 KSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG---- 283
+ K PH+YA+ + A R M + + NQ +IISGESGAGKTE +K MQ+L +
Sbjct: 68 RYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSP 127
Query: 284 -GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342
G I +L +NP+LEAFGNAKT RNDNSSRFGK +E+ F+ G G I +LLEKS
Sbjct: 128 NGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKS 187
Query: 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQFR 401
RVV +GER++HIFYQ+ G + ++L L +A Y+YL++S C+ ++ +DD+ +F+
Sbjct: 188 RVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFK 247
Query: 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE----NHVEPVADEGLITVAK 457
I+V+A++ + + + DQ S++ +LAA+L +GN++F + V+ + L A
Sbjct: 248 IIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAAS 307
Query: 458 LIGCDIGELKLALSTRKMRVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQ 513
+ D L +AL R + G I + +QA +RDALAK++Y LF WLV +
Sbjct: 308 CLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSK 367
Query: 514 INKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573
IN + + G I ILDIYGFE F NSFEQ IN+ NE+LQQ F K EQEEY
Sbjct: 368 INTIINCTTEK-GPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEY 426
Query: 574 IQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQL 605
+++GI+W +++ +NK L EK P L L
Sbjct: 427 VREGIEWKNIEYFNNKPICELIEKKPIGLISL 458
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 265 AGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324
A KT+ +I + Y A L G + +E +L+TN + +GN T N+ +I +
Sbjct: 108 AAKTKDVEIKITYSATLNGSAVVE--VLETNDVKLDYGNNPTIENEPKEGIPVDKKITVN 165
Query: 325 ETGKISGANIQTF--LLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKY 382
+T + G + ++ +Q +G++ ++ A NL +AK Y+
Sbjct: 166 KTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRV 225
Query: 383 LRQSSCYS------INGV 394
+ + S Y+ +NGV
Sbjct: 226 IERVSGYAPEYVSFVNGV 243
>pdb|2Q8Q|A Chain A, Crystal Structure Of S. Aureus Isde Complexed With Heme
Length = 260
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 133 LGKILSISGTESVISLPEGKVLKVKSENLVSANPDIL 169
+G ++ I+G E+VI + + + + +ENL++ NPDI+
Sbjct: 159 IGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDII 195
>pdb|2Q8P|A Chain A, Crystal Structure Of Selenomethionine Labelled S. Aureus
Isde Complexed With Heme
Length = 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 133 LGKILSISGTESVISLPEGKVLKVKSENLVSANPDIL 169
+G ++ I+G E+VI + + + + +ENL++ NPDI+
Sbjct: 159 IGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDII 195
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEA----FGNAKTSRNDN 311
++ ++G SGAGKT + +YL GI L + I + G + R +N
Sbjct: 54 TVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNIRQGLNKNLGFSPEDREEN 109
Query: 312 SSRFGKLIEIHFSETGKISGAN-IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE 370
R ++ ++ F++ G + + I + +++ Q EG A F+++ V AP + E
Sbjct: 110 VRRIAEVAKL-FADAGLVCITSFISPYTQDRNNARQIHEG--ASLPFFEVFVDAPLHVCE 166
Query: 371 KLNLMSAKEYKYLRQSSCYSINGVD 395
+ ++ YK R G+D
Sbjct: 167 QRDVKGL--YKKARAGEIKGFTGID 189
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEA----FGNAKTSRNDN 311
++ ++G SGAGKT + +YL GI L + I + G + R +N
Sbjct: 7 TVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNIRQGLNKNLGFSPEDREEN 62
Query: 312 SSRFGKLIEIHFSETGKISGAN-IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE 370
R ++ ++ F++ G + + I + +++ Q EG A F+++ V AP + E
Sbjct: 63 VRRIAEVAKL-FADAGLVCITSFISPYTQDRNNARQIHEG--ASLPFFEVFVDAPLHVCE 119
Query: 371 KLNLMSAKEYKYLRQSSCYSINGVD 395
+ ++ YK R G+D
Sbjct: 120 QRDVKGL--YKKARAGEIKGFTGID 142
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEA----FGNAKTSRNDN 311
+I ++G SGAGKT + +YL GI L + I + G + R +N
Sbjct: 35 TIWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNIRQGLNKNLGFSPEDREEN 90
Query: 312 SSRFGKLIEIHFSETGKISGAN-IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE 370
R ++ ++ F++ G + + I + +++ Q EG A F+++ V AP + E
Sbjct: 91 VRRIAEVAKL-FADAGLVCITSFISPYTQDRNNARQIHEG--ASLPFFEVFVDAPLHVCE 147
Query: 371 KLNLMSAKEYKYLRQSSCYSINGVD 395
+ ++ YK R G+D
Sbjct: 148 QRDVKGL--YKKARAGEIKGFTGID 170
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEA----FGNAKTSRNDN 311
++ ++G SGAGKT + +YL GI L + I + G + R +N
Sbjct: 34 TVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNIRQGLNKNLGFSPEDREEN 89
Query: 312 SSRFGKLIEIHFSETGKISGAN-IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALRE 370
R ++ ++ F++ G + + I + +++ Q EG A F+++ V AP + E
Sbjct: 90 VRRIAEVAKL-FADAGLVCITSFISPYTQDRNNARQIHEG--ASLPFFEVFVDAPLHVCE 146
Query: 371 KLNLMSAKEYKYLRQSSCYSINGVD 395
+ ++ YK R G+D
Sbjct: 147 QRDVKGL--YKKARAGEIKGFTGID 169
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 247 EMIRDE--VNQSIIISGESGAGKTETAKIAMQYLA------ALGGGSGIEYEILKTNPIL 298
EMIR+ ++++I+G+ G GKT A Q L A+ G E+ KT +
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120
Query: 299 EAF 301
+AF
Sbjct: 121 QAF 123
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 135 KILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLM----QLSYLNEPSVLYNL 190
KI S+SG E++ L G+ L K ENL + + D +++L Q++ L+ L NL
Sbjct: 63 KISSLSGMENLRILSLGRNLIKKIENLDA----VADTLEELWISYNQIASLSGIEKLVNL 118
Query: 191 HYRYKQDMIYTKAGPV--LVAINPFKKVPLYGNYYIEAYKSKSIESPH 236
Y + T G + L A++ + + L GN YK + S +
Sbjct: 119 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,779,374
Number of Sequences: 62578
Number of extensions: 759778
Number of successful extensions: 2401
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2080
Number of HSP's gapped (non-prelim): 77
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)