Query 005424
Match_columns 697
No_of_seqs 316 out of 1510
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 23:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-162 6E-167 1418.5 38.2 565 117-693 7-590 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-159 5E-164 1388.0 48.8 567 116-694 30-623 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 4E-153 8E-158 1318.5 44.5 519 163-692 1-521 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 4E-151 8E-156 1301.7 45.2 515 171-695 1-524 (671)
5 KOG0161 Myosin class II heavy 100.0 4E-152 8E-157 1385.2 33.7 586 93-693 6-610 (1930)
6 cd01377 MYSc_type_II Myosin mo 100.0 2E-150 3E-155 1301.6 45.5 518 166-695 1-538 (693)
7 cd01380 MYSc_type_V Myosin mot 100.0 3E-150 7E-155 1298.3 44.4 514 171-695 1-530 (691)
8 cd01385 MYSc_type_IX Myosin mo 100.0 2E-149 5E-154 1290.6 44.3 517 169-695 6-538 (692)
9 cd01384 MYSc_type_XI Myosin mo 100.0 3E-149 6E-154 1285.9 43.9 514 170-695 1-528 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 5E-149 1E-153 1285.4 43.7 513 170-695 1-522 (677)
11 cd01378 MYSc_type_I Myosin mot 100.0 2E-148 3E-153 1281.6 43.7 514 171-695 1-529 (674)
12 cd01382 MYSc_type_VI Myosin mo 100.0 3E-146 7E-151 1268.4 43.4 515 169-695 3-568 (717)
13 cd01379 MYSc_type_III Myosin m 100.0 7E-146 2E-150 1253.7 44.2 510 171-692 1-528 (653)
14 smart00242 MYSc Myosin. Large 100.0 8E-145 2E-149 1253.7 44.4 520 165-695 1-531 (677)
15 cd00124 MYSc Myosin motor doma 100.0 6E-144 1E-148 1247.8 43.7 514 171-695 1-524 (679)
16 cd01386 MYSc_type_XVIII Myosin 100.0 5E-141 1E-145 1229.7 43.3 511 172-695 2-564 (767)
17 PF00063 Myosin_head: Myosin h 100.0 4E-141 8E-146 1228.9 38.1 513 172-694 1-530 (689)
18 KOG0164 Myosin class I heavy c 100.0 6E-138 1E-142 1139.6 26.3 514 169-695 7-544 (1001)
19 KOG0162 Myosin class I heavy c 100.0 2E-137 4E-142 1135.4 28.7 512 167-692 15-543 (1106)
20 KOG0163 Myosin class VI heavy 100.0 5E-136 1E-140 1124.5 31.5 557 120-691 5-618 (1259)
21 KOG0160 Myosin class V heavy c 100.0 7E-125 1E-129 1082.2 31.6 514 164-692 3-525 (862)
22 KOG4229 Myosin VII, myosin IXB 100.0 4E-106 9E-111 945.6 22.1 516 161-686 52-580 (1062)
23 cd01363 Motor_domain Myosin an 98.8 8E-09 1.7E-13 102.8 6.5 87 237-330 8-98 (186)
24 PF02736 Myosin_N: Myosin N-te 98.3 1.9E-06 4.2E-11 66.3 6.6 40 121-160 3-42 (42)
25 KOG0925 mRNA splicing factor A 95.6 0.0095 2.1E-07 67.2 3.4 64 210-279 24-88 (699)
26 PF13207 AAA_17: AAA domain; P 95.4 0.013 2.9E-07 53.1 3.2 23 256-278 1-23 (121)
27 PF13401 AAA_22: AAA domain; P 95.0 0.02 4.3E-07 52.4 3.1 29 252-280 2-30 (131)
28 cd00009 AAA The AAA+ (ATPases 94.9 0.038 8.1E-07 49.8 4.7 31 249-279 14-44 (151)
29 PF13191 AAA_16: AAA ATPase do 94.7 0.023 5.1E-07 54.8 3.1 32 249-280 19-50 (185)
30 PF13238 AAA_18: AAA domain; P 94.3 0.035 7.7E-07 50.2 3.0 22 257-278 1-22 (129)
31 TIGR02322 phosphon_PhnN phosph 94.0 0.045 9.7E-07 53.5 3.2 24 255-278 2-25 (179)
32 smart00382 AAA ATPases associa 93.8 0.045 9.7E-07 48.6 2.6 27 254-280 2-28 (148)
33 PF00004 AAA: ATPase family as 93.5 0.057 1.2E-06 49.0 2.9 23 257-279 1-23 (132)
34 cd02019 NK Nucleoside/nucleoti 93.4 0.078 1.7E-06 44.5 3.3 22 257-278 2-23 (69)
35 PRK05480 uridine/cytidine kina 93.3 0.081 1.7E-06 53.2 3.8 27 252-278 4-30 (209)
36 PRK06696 uridine kinase; Valid 93.1 0.13 2.9E-06 52.5 5.2 39 240-280 10-48 (223)
37 PRK00300 gmk guanylate kinase; 93.0 0.071 1.5E-06 53.1 3.0 26 253-278 4-29 (205)
38 PF12846 AAA_10: AAA-like doma 93.0 0.088 1.9E-06 54.5 3.7 30 254-283 1-30 (304)
39 cd01918 HprK_C HprK/P, the bif 92.9 0.089 1.9E-06 51.4 3.4 25 253-277 13-37 (149)
40 cd01131 PilT Pilus retraction 92.8 0.087 1.9E-06 53.1 3.2 25 256-280 3-27 (198)
41 PF00485 PRK: Phosphoribulokin 92.8 0.082 1.8E-06 52.8 3.0 26 257-282 2-27 (194)
42 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.18 3.9E-06 50.8 5.5 38 243-280 27-64 (226)
43 TIGR00235 udk uridine kinase. 92.8 0.11 2.4E-06 52.4 4.0 27 252-278 4-30 (207)
44 PRK08233 hypothetical protein; 92.7 0.078 1.7E-06 51.4 2.7 24 255-278 4-27 (182)
45 cd02023 UMPK Uridine monophosp 92.6 0.096 2.1E-06 52.2 3.2 22 257-278 2-23 (198)
46 PRK06762 hypothetical protein; 92.6 0.12 2.6E-06 49.9 3.7 25 254-278 2-26 (166)
47 PF01583 APS_kinase: Adenylyls 92.6 0.15 3.2E-06 50.3 4.4 29 254-282 2-30 (156)
48 cd02020 CMPK Cytidine monophos 92.5 0.11 2.3E-06 48.4 3.2 22 257-278 2-23 (147)
49 TIGR02173 cyt_kin_arch cytidyl 92.5 0.096 2.1E-06 50.2 2.9 23 256-278 2-24 (171)
50 PRK00131 aroK shikimate kinase 92.4 0.12 2.6E-06 49.5 3.5 26 253-278 3-28 (175)
51 cd00820 PEPCK_HprK Phosphoenol 92.4 0.11 2.4E-06 48.0 3.2 23 253-275 14-36 (107)
52 TIGR00150 HI0065_YjeE ATPase, 92.4 0.21 4.5E-06 48.0 5.1 27 252-278 20-46 (133)
53 PF05729 NACHT: NACHT domain 92.4 0.12 2.7E-06 48.5 3.6 27 256-282 2-28 (166)
54 PRK13833 conjugal transfer pro 92.4 0.16 3.5E-06 55.5 4.8 34 245-280 137-170 (323)
55 cd01129 PulE-GspE PulE/GspE Th 92.3 0.16 3.6E-06 53.7 4.7 35 245-280 72-106 (264)
56 PRK07261 topology modulation p 92.3 0.11 2.5E-06 51.1 3.2 24 255-278 1-24 (171)
57 PRK05541 adenylylsulfate kinas 92.3 0.11 2.4E-06 50.7 3.1 29 252-280 5-33 (176)
58 COG0444 DppD ABC-type dipeptid 92.0 0.1 2.2E-06 56.7 2.6 28 252-279 29-56 (316)
59 PRK09270 nucleoside triphospha 91.9 0.3 6.4E-06 50.2 5.9 33 251-283 30-62 (229)
60 cd02028 UMPK_like Uridine mono 91.9 0.14 3E-06 50.9 3.3 24 257-280 2-25 (179)
61 PRK08118 topology modulation p 91.8 0.14 3.1E-06 50.3 3.4 24 255-278 2-25 (167)
62 TIGR03015 pepcterm_ATPase puta 91.7 0.18 3.9E-06 52.2 4.1 28 252-279 41-68 (269)
63 cd01130 VirB11-like_ATPase Typ 91.7 0.13 2.7E-06 51.2 2.8 26 254-279 25-50 (186)
64 PRK00440 rfc replication facto 91.7 0.33 7.1E-06 51.4 6.1 37 243-279 27-63 (319)
65 PTZ00301 uridine kinase; Provi 91.6 0.15 3.3E-06 52.3 3.3 23 257-279 6-28 (210)
66 cd01124 KaiC KaiC is a circadi 91.5 0.21 4.5E-06 48.7 4.0 28 256-283 1-28 (187)
67 COG0194 Gmk Guanylate kinase [ 91.4 0.15 3.2E-06 51.7 2.9 25 254-278 4-28 (191)
68 TIGR02782 TrbB_P P-type conjug 91.4 0.24 5.2E-06 53.4 4.8 27 254-280 132-158 (299)
69 PRK06547 hypothetical protein; 91.4 0.31 6.7E-06 48.4 5.2 28 251-278 12-39 (172)
70 TIGR02928 orc1/cdc6 family rep 91.4 0.22 4.7E-06 54.1 4.5 36 245-280 31-66 (365)
71 cd02025 PanK Pantothenate kina 91.4 0.16 3.4E-06 52.3 3.2 24 257-280 2-25 (220)
72 cd00227 CPT Chloramphenicol (C 91.3 0.18 3.9E-06 49.4 3.4 25 254-278 2-26 (175)
73 PF03266 NTPase_1: NTPase; In 91.3 0.17 3.7E-06 50.1 3.3 51 257-337 2-52 (168)
74 PF07724 AAA_2: AAA domain (Cd 91.3 0.2 4.2E-06 49.8 3.6 24 256-279 5-28 (171)
75 cd01120 RecA-like_NTPases RecA 91.3 0.21 4.5E-06 46.5 3.7 25 257-281 2-26 (165)
76 PRK08084 DNA replication initi 91.2 0.35 7.6E-06 50.1 5.7 40 241-280 32-71 (235)
77 PF00910 RNA_helicase: RNA hel 91.2 0.18 3.9E-06 45.8 3.1 24 257-280 1-24 (107)
78 PRK00889 adenylylsulfate kinas 91.1 0.27 5.9E-06 47.9 4.5 28 253-280 3-30 (175)
79 PRK10078 ribose 1,5-bisphospho 91.0 0.15 3.2E-06 50.6 2.5 24 254-277 2-25 (186)
80 PRK07196 fliI flagellum-specif 90.9 0.52 1.1E-05 53.6 6.9 41 237-277 138-178 (434)
81 TIGR01313 therm_gnt_kin carboh 90.8 0.15 3.3E-06 49.0 2.3 22 257-278 1-22 (163)
82 TIGR01420 pilT_fam pilus retra 90.6 0.19 4.2E-06 55.0 3.2 34 245-279 114-147 (343)
83 cd02027 APSK Adenosine 5'-phos 90.6 0.23 4.9E-06 47.8 3.3 24 257-280 2-25 (149)
84 TIGR03263 guanyl_kin guanylate 90.5 0.16 3.4E-06 49.5 2.1 24 255-278 2-25 (180)
85 PRK14737 gmk guanylate kinase; 90.4 0.2 4.4E-06 50.2 2.9 25 254-278 4-28 (186)
86 cd00071 GMPK Guanosine monopho 90.4 0.18 4E-06 47.9 2.4 22 257-278 2-23 (137)
87 PRK03846 adenylylsulfate kinas 90.4 0.41 8.9E-06 48.0 5.1 32 251-282 21-52 (198)
88 KOG0574 STE20-like serine/thre 90.3 0.079 1.7E-06 57.2 -0.1 45 79-129 224-273 (502)
89 PRK14961 DNA polymerase III su 90.3 0.39 8.4E-06 53.0 5.3 53 224-280 7-64 (363)
90 PRK14738 gmk guanylate kinase; 90.2 0.24 5.2E-06 50.2 3.2 26 252-277 11-36 (206)
91 PF03668 ATP_bind_2: P-loop AT 90.2 0.21 4.6E-06 53.6 2.9 20 255-274 2-21 (284)
92 PRK00411 cdc6 cell division co 90.1 0.34 7.3E-06 53.3 4.6 35 247-281 48-82 (394)
93 PRK12402 replication factor C 90.1 0.42 9E-06 51.1 5.1 34 247-280 29-62 (337)
94 PF13671 AAA_33: AAA domain; P 90.1 0.19 4.2E-06 46.7 2.3 22 257-278 2-23 (143)
95 PF00437 T2SE: Type II/IV secr 90.1 0.2 4.4E-06 52.4 2.7 28 253-280 126-153 (270)
96 PRK06217 hypothetical protein; 90.0 0.23 5E-06 49.1 2.9 23 256-278 3-25 (183)
97 PF13245 AAA_19: Part of AAA d 90.0 0.42 9.1E-06 41.3 4.1 28 253-280 9-36 (76)
98 cd02024 NRK1 Nicotinamide ribo 89.9 0.23 5E-06 50.1 2.8 22 257-278 2-23 (187)
99 cd00464 SK Shikimate kinase (S 89.9 0.25 5.5E-06 46.5 3.0 23 256-278 1-23 (154)
100 PRK08903 DnaA regulatory inact 89.8 0.65 1.4E-05 47.3 6.1 30 252-281 40-69 (227)
101 TIGR00554 panK_bact pantothena 89.7 0.66 1.4E-05 50.1 6.2 31 251-281 59-89 (290)
102 TIGR02524 dot_icm_DotB Dot/Icm 89.7 0.26 5.6E-06 54.6 3.3 28 253-280 133-160 (358)
103 PRK10751 molybdopterin-guanine 89.7 0.3 6.5E-06 48.8 3.4 26 256-281 8-33 (173)
104 PRK13900 type IV secretion sys 89.6 0.38 8.1E-06 52.8 4.4 26 254-279 160-185 (332)
105 TIGR01360 aden_kin_iso1 adenyl 89.6 0.3 6.4E-06 47.6 3.2 23 256-278 5-27 (188)
106 PF03205 MobB: Molybdopterin g 89.5 0.34 7.3E-06 46.6 3.4 27 256-282 2-28 (140)
107 PRK04182 cytidylate kinase; Pr 89.4 0.28 6.1E-06 47.3 2.9 23 256-278 2-24 (180)
108 TIGR02525 plasmid_TraJ plasmid 89.2 0.3 6.6E-06 54.4 3.3 27 254-280 149-175 (372)
109 cd02021 GntK Gluconate kinase 89.1 0.3 6.5E-06 46.2 2.8 21 257-277 2-22 (150)
110 COG1660 Predicted P-loop-conta 88.9 0.27 5.9E-06 52.2 2.5 19 256-274 3-21 (286)
111 PRK07667 uridine kinase; Provi 88.8 0.41 9E-06 47.9 3.7 26 255-280 18-43 (193)
112 PRK12377 putative replication 88.8 0.72 1.6E-05 48.6 5.6 46 235-282 84-129 (248)
113 PRK05057 aroK shikimate kinase 88.6 0.37 8.1E-06 47.5 3.2 25 254-278 4-28 (172)
114 cd03115 SRP The signal recogni 88.6 0.49 1.1E-05 46.0 4.0 27 256-282 2-28 (173)
115 COG0563 Adk Adenylate kinase a 88.6 0.38 8.1E-06 48.2 3.2 23 256-278 2-24 (178)
116 PRK13851 type IV secretion sys 88.4 0.26 5.7E-06 54.3 2.1 26 254-279 162-187 (344)
117 COG0572 Udk Uridine kinase [Nu 88.4 0.37 8.1E-06 49.9 3.1 26 254-279 6-33 (218)
118 PRK14527 adenylate kinase; Pro 88.4 0.39 8.4E-06 47.8 3.2 27 252-278 4-30 (191)
119 COG0529 CysC Adenylylsulfate k 88.4 0.71 1.5E-05 46.7 4.9 43 239-282 9-51 (197)
120 KOG0587 Traf2- and Nck-interac 88.3 0.2 4.4E-06 60.4 1.2 39 79-120 223-266 (953)
121 PHA00729 NTP-binding motif con 88.2 0.79 1.7E-05 47.8 5.4 38 241-279 5-42 (226)
122 PF07475 Hpr_kinase_C: HPr Ser 88.2 0.41 8.8E-06 47.9 3.1 23 254-276 18-40 (171)
123 cd03293 ABC_NrtD_SsuB_transpor 88.2 0.38 8.1E-06 48.7 2.9 26 252-277 28-53 (220)
124 PF07728 AAA_5: AAA domain (dy 88.1 0.4 8.8E-06 44.7 2.9 23 256-278 1-23 (139)
125 PRK04040 adenylate kinase; Pro 88.1 0.46 1E-05 47.7 3.5 25 255-279 3-27 (188)
126 PRK09825 idnK D-gluconate kina 88.0 0.44 9.6E-06 47.3 3.3 26 254-279 3-28 (176)
127 PRK13764 ATPase; Provisional 88.0 0.54 1.2E-05 55.5 4.4 27 254-280 257-283 (602)
128 TIGR01166 cbiO cobalt transpor 87.9 0.42 9.1E-06 47.3 3.1 25 252-276 16-40 (190)
129 TIGR02868 CydC thiol reductant 87.9 0.28 6.1E-06 56.3 2.1 28 252-279 359-386 (529)
130 TIGR02673 FtsE cell division A 87.9 0.41 9E-06 48.1 3.0 26 252-277 26-51 (214)
131 PRK06893 DNA replication initi 87.9 0.94 2E-05 46.7 5.7 46 235-282 22-67 (229)
132 cd03260 ABC_PstB_phosphate_tra 87.8 0.44 9.5E-06 48.4 3.2 27 252-278 24-50 (227)
133 PF00005 ABC_tran: ABC transpo 87.8 0.36 7.7E-06 44.7 2.3 26 253-278 10-35 (137)
134 PRK08727 hypothetical protein; 87.8 0.91 2E-05 47.0 5.5 32 251-282 38-69 (233)
135 TIGR02533 type_II_gspE general 87.7 0.52 1.1E-05 54.3 4.1 35 244-279 233-267 (486)
136 cd03259 ABC_Carb_Solutes_like 87.7 0.45 9.7E-06 47.9 3.1 27 252-278 24-50 (213)
137 TIGR00960 3a0501s02 Type II (G 87.7 0.43 9.3E-06 48.1 3.0 26 252-277 27-52 (216)
138 TIGR01359 UMP_CMP_kin_fam UMP- 87.7 0.45 9.8E-06 46.4 3.1 22 257-278 2-23 (183)
139 cd01983 Fer4_NifH The Fer4_Nif 87.6 0.67 1.4E-05 39.1 3.8 26 257-282 2-27 (99)
140 cd03225 ABC_cobalt_CbiO_domain 87.5 0.47 1E-05 47.6 3.2 27 252-278 25-51 (211)
141 COG4608 AppF ABC-type oligopep 87.5 0.39 8.6E-06 51.1 2.7 32 252-283 37-68 (268)
142 PF02367 UPF0079: Uncharacteri 87.4 0.5 1.1E-05 44.8 3.1 27 252-278 13-39 (123)
143 cd03255 ABC_MJ0796_Lo1CDE_FtsE 87.4 0.46 1E-05 47.9 3.1 27 252-278 28-54 (218)
144 KOG0744 AAA+-type ATPase [Post 87.4 0.64 1.4E-05 50.9 4.2 46 235-280 152-203 (423)
145 PRK15093 antimicrobial peptide 87.3 0.45 9.7E-06 51.8 3.1 27 252-278 31-57 (330)
146 cd03292 ABC_FtsE_transporter F 87.3 0.47 1E-05 47.6 3.0 26 252-277 25-50 (214)
147 PHA02544 44 clamp loader, smal 87.3 0.67 1.5E-05 49.4 4.4 34 245-278 33-67 (316)
148 TIGR03608 L_ocin_972_ABC putat 87.3 0.48 1E-05 47.3 3.0 26 252-277 22-47 (206)
149 PF01637 Arch_ATPase: Archaeal 87.2 0.46 9.9E-06 47.1 2.9 34 245-278 11-44 (234)
150 PRK14531 adenylate kinase; Pro 87.2 0.57 1.2E-05 46.4 3.5 24 255-278 3-26 (183)
151 PRK15177 Vi polysaccharide exp 87.1 0.49 1.1E-05 48.1 3.1 27 252-278 11-37 (213)
152 cd03258 ABC_MetN_methionine_tr 87.1 0.49 1.1E-05 48.2 3.1 27 252-278 29-55 (233)
153 PRK11176 lipid transporter ATP 87.1 0.41 8.8E-06 55.6 2.8 28 252-279 367-394 (582)
154 cd02029 PRK_like Phosphoribulo 87.0 0.59 1.3E-05 50.1 3.7 24 257-280 2-25 (277)
155 cd03296 ABC_CysA_sulfate_impor 87.0 0.5 1.1E-05 48.5 3.1 27 252-278 26-52 (239)
156 PRK00698 tmk thymidylate kinas 87.0 0.74 1.6E-05 45.5 4.2 28 254-281 3-30 (205)
157 COG1618 Predicted nucleotide k 87.0 1.3 2.9E-05 44.2 5.8 54 255-338 6-59 (179)
158 TIGR00176 mobB molybdopterin-g 87.0 0.65 1.4E-05 45.3 3.7 26 257-282 2-27 (155)
159 cd03229 ABC_Class3 This class 86.9 0.53 1.2E-05 46.2 3.1 27 252-278 24-50 (178)
160 COG1125 OpuBA ABC-type proline 86.9 0.43 9.4E-06 50.8 2.6 34 528-563 205-238 (309)
161 PRK13894 conjugal transfer ATP 86.9 0.5 1.1E-05 51.5 3.2 27 254-280 148-174 (319)
162 PRK13342 recombination factor 86.9 0.75 1.6E-05 51.6 4.6 43 235-278 18-60 (413)
163 PF00625 Guanylate_kin: Guanyl 86.8 0.53 1.1E-05 46.5 3.0 24 255-278 3-26 (183)
164 cd03224 ABC_TM1139_LivF_branch 86.8 0.54 1.2E-05 47.4 3.2 26 252-277 24-49 (222)
165 COG1493 HprK Serine kinase of 86.7 0.55 1.2E-05 50.7 3.3 25 254-278 145-169 (308)
166 TIGR02902 spore_lonB ATP-depen 86.7 0.87 1.9E-05 53.0 5.2 31 249-279 81-111 (531)
167 PHA02530 pseT polynucleotide k 86.7 0.52 1.1E-05 49.9 3.1 25 254-278 2-26 (300)
168 PRK11308 dppF dipeptide transp 86.6 0.51 1.1E-05 51.5 3.1 27 252-278 39-65 (327)
169 TIGR02881 spore_V_K stage V sp 86.6 0.66 1.4E-05 48.6 3.8 30 253-282 41-70 (261)
170 TIGR03499 FlhF flagellar biosy 86.6 0.69 1.5E-05 49.4 4.0 29 253-281 193-221 (282)
171 cd03235 ABC_Metallic_Cations A 86.5 0.51 1.1E-05 47.5 2.8 26 252-277 23-48 (213)
172 TIGR02788 VirB11 P-type DNA tr 86.5 0.42 9E-06 51.6 2.3 26 253-278 143-168 (308)
173 PRK14964 DNA polymerase III su 86.5 0.85 1.8E-05 52.7 4.9 55 224-281 4-62 (491)
174 cd03268 ABC_BcrA_bacitracin_re 86.4 0.58 1.3E-05 46.9 3.1 26 252-277 24-49 (208)
175 TIGR00678 holB DNA polymerase 86.4 0.9 2E-05 44.9 4.4 35 246-280 5-40 (188)
176 PRK09473 oppD oligopeptide tra 86.4 0.49 1.1E-05 51.6 2.8 27 252-278 40-66 (330)
177 PF00158 Sigma54_activat: Sigm 86.4 0.7 1.5E-05 45.7 3.6 25 252-276 20-44 (168)
178 PRK12608 transcription termina 86.3 0.73 1.6E-05 51.5 4.1 42 239-280 118-159 (380)
179 cd01672 TMPK Thymidine monopho 86.3 0.74 1.6E-05 44.8 3.7 24 257-280 3-26 (200)
180 cd03116 MobB Molybdenum is an 86.3 0.84 1.8E-05 44.9 4.1 28 255-282 2-29 (159)
181 PRK15079 oligopeptide ABC tran 86.3 0.54 1.2E-05 51.4 3.0 27 252-278 45-71 (331)
182 cd03297 ABC_ModC_molybdenum_tr 86.3 0.61 1.3E-05 47.0 3.2 26 252-278 22-47 (214)
183 cd03265 ABC_DrrA DrrA is the A 86.2 0.6 1.3E-05 47.3 3.1 25 252-276 24-48 (220)
184 TIGR00455 apsK adenylylsulfate 86.2 1 2.2E-05 44.4 4.7 29 252-280 16-44 (184)
185 TIGR02315 ABC_phnC phosphonate 86.2 0.58 1.3E-05 47.9 3.1 26 252-277 26-51 (243)
186 PRK03839 putative kinase; Prov 86.2 0.64 1.4E-05 45.6 3.2 23 256-278 2-24 (180)
187 TIGR00064 ftsY signal recognit 86.2 1.5 3.2E-05 46.8 6.2 46 237-282 46-100 (272)
188 cd03266 ABC_NatA_sodium_export 86.2 0.6 1.3E-05 47.0 3.1 25 252-276 29-53 (218)
189 PRK14528 adenylate kinase; Pro 86.1 0.69 1.5E-05 46.1 3.5 24 255-278 2-25 (186)
190 cd03256 ABC_PhnC_transporter A 86.1 0.59 1.3E-05 47.8 3.1 27 252-278 25-51 (241)
191 TIGR03864 PQQ_ABC_ATP ABC tran 86.1 0.6 1.3E-05 47.9 3.1 26 252-277 25-50 (236)
192 PF00308 Bac_DnaA: Bacterial d 86.1 1.2 2.7E-05 45.7 5.4 41 241-281 19-61 (219)
193 cd03269 ABC_putative_ATPase Th 86.1 0.62 1.3E-05 46.7 3.1 26 252-277 24-49 (210)
194 PLN03025 replication factor C 86.0 1.1 2.4E-05 48.4 5.3 36 244-279 24-59 (319)
195 cd03219 ABC_Mj1267_LivG_branch 86.0 0.58 1.3E-05 47.7 2.9 26 252-277 24-49 (236)
196 PRK06645 DNA polymerase III su 85.9 0.98 2.1E-05 52.4 5.0 54 225-281 13-70 (507)
197 cd03262 ABC_HisP_GlnQ_permease 85.9 0.63 1.4E-05 46.6 3.1 26 252-277 24-49 (213)
198 PF03193 DUF258: Protein of un 85.9 0.65 1.4E-05 46.0 3.1 25 253-277 34-58 (161)
199 PRK08116 hypothetical protein; 85.8 1.4 3E-05 46.8 5.8 47 235-281 94-141 (268)
200 PRK11124 artP arginine transpo 85.8 0.63 1.4E-05 47.8 3.1 26 252-277 26-51 (242)
201 PRK08356 hypothetical protein; 85.8 0.56 1.2E-05 46.9 2.7 21 255-275 6-26 (195)
202 PRK10416 signal recognition pa 85.8 0.89 1.9E-05 49.6 4.4 31 252-282 112-142 (318)
203 PRK14956 DNA polymerase III su 85.8 0.89 1.9E-05 52.3 4.5 52 225-280 10-66 (484)
204 PF13555 AAA_29: P-loop contai 85.8 0.94 2E-05 38.0 3.5 20 256-275 25-44 (62)
205 PF12774 AAA_6: Hydrolytic ATP 85.7 0.79 1.7E-05 47.8 3.8 41 240-280 17-58 (231)
206 PRK15453 phosphoribulokinase; 85.7 0.73 1.6E-05 49.7 3.6 26 254-279 5-30 (290)
207 cd03226 ABC_cobalt_CbiO_domain 85.7 0.63 1.4E-05 46.6 3.0 26 252-277 24-49 (205)
208 cd03270 ABC_UvrA_I The excisio 85.7 0.64 1.4E-05 47.8 3.1 24 252-275 19-42 (226)
209 PRK13539 cytochrome c biogenes 85.7 0.65 1.4E-05 46.7 3.1 26 252-277 26-51 (207)
210 PRK10908 cell division protein 85.7 0.65 1.4E-05 47.1 3.1 26 252-277 26-51 (222)
211 PRK06761 hypothetical protein; 85.7 0.59 1.3E-05 50.3 2.9 26 255-280 4-29 (282)
212 COG1102 Cmk Cytidylate kinase 85.7 0.66 1.4E-05 46.3 3.0 23 257-279 3-25 (179)
213 PRK09111 DNA polymerase III su 85.7 0.88 1.9E-05 53.8 4.6 32 250-281 42-73 (598)
214 PF13479 AAA_24: AAA domain 85.7 0.55 1.2E-05 47.8 2.6 23 252-274 1-23 (213)
215 PRK14974 cell division protein 85.7 1.5 3.3E-05 48.3 6.1 31 252-282 138-168 (336)
216 PRK05416 glmZ(sRNA)-inactivati 85.7 0.61 1.3E-05 50.2 3.0 21 254-274 6-26 (288)
217 TIGR01978 sufC FeS assembly AT 85.7 0.63 1.4E-05 47.6 3.0 26 252-277 24-49 (243)
218 TIGR03574 selen_PSTK L-seryl-t 85.6 0.68 1.5E-05 48.0 3.2 24 257-280 2-25 (249)
219 cd03301 ABC_MalK_N The N-termi 85.6 0.68 1.5E-05 46.5 3.1 27 252-278 24-50 (213)
220 cd03223 ABCD_peroxisomal_ALDP 85.6 0.68 1.5E-05 45.2 3.1 27 252-278 25-51 (166)
221 cd02034 CooC The accessory pro 85.6 0.91 2E-05 42.3 3.7 26 257-282 2-27 (116)
222 TIGR00972 3a0107s01c2 phosphat 85.5 0.65 1.4E-05 47.9 3.1 27 252-278 25-51 (247)
223 TIGR01184 ntrCD nitrate transp 85.5 0.66 1.4E-05 47.5 3.1 27 252-278 9-35 (230)
224 PF01580 FtsK_SpoIIIE: FtsK/Sp 85.5 0.62 1.3E-05 46.6 2.8 25 256-280 40-64 (205)
225 PRK11022 dppD dipeptide transp 85.4 0.62 1.3E-05 50.7 3.0 27 252-278 31-57 (326)
226 COG1123 ATPase components of v 85.4 0.49 1.1E-05 54.9 2.3 30 252-281 33-62 (539)
227 cd03218 ABC_YhbG The ABC trans 85.4 0.69 1.5E-05 47.1 3.1 26 252-277 24-49 (232)
228 TIGR02880 cbbX_cfxQ probable R 85.4 0.78 1.7E-05 49.0 3.6 27 256-282 60-86 (284)
229 TIGR03877 thermo_KaiC_1 KaiC d 85.3 1.1 2.3E-05 46.4 4.5 28 253-280 20-47 (237)
230 cd03245 ABCC_bacteriocin_expor 85.3 0.69 1.5E-05 46.7 3.0 26 252-277 28-53 (220)
231 TIGR03410 urea_trans_UrtE urea 85.3 0.68 1.5E-05 47.1 3.0 27 252-278 24-50 (230)
232 cd03230 ABC_DR_subfamily_A Thi 85.3 0.72 1.6E-05 45.1 3.1 26 252-277 24-49 (173)
233 TIGR02211 LolD_lipo_ex lipopro 85.3 0.7 1.5E-05 46.6 3.1 26 252-277 29-54 (221)
234 PRK05428 HPr kinase/phosphoryl 85.2 0.7 1.5E-05 50.3 3.2 24 254-277 146-169 (308)
235 COG1124 DppF ABC-type dipeptid 85.2 0.69 1.5E-05 48.8 3.0 29 252-280 31-59 (252)
236 PRK14962 DNA polymerase III su 85.1 1.1 2.4E-05 51.4 5.0 52 225-280 6-62 (472)
237 COG2884 FtsE Predicted ATPase 85.1 0.67 1.5E-05 47.5 2.8 25 253-277 27-51 (223)
238 PRK08533 flagellar accessory p 85.1 1.2 2.6E-05 46.1 4.8 28 253-280 23-50 (230)
239 PF13604 AAA_30: AAA domain; P 85.1 1.4 3.1E-05 44.4 5.1 39 243-282 8-46 (196)
240 PRK14242 phosphate transporter 85.0 0.69 1.5E-05 47.8 3.0 26 252-277 30-55 (253)
241 TIGR02770 nickel_nikD nickel i 85.0 0.7 1.5E-05 47.3 3.0 27 252-278 10-36 (230)
242 PRK10584 putative ABC transpor 85.0 0.73 1.6E-05 46.9 3.1 27 252-278 34-60 (228)
243 PRK09112 DNA polymerase III su 85.0 1.3 2.9E-05 48.9 5.3 40 241-280 31-71 (351)
244 cd03234 ABCG_White The White s 85.0 0.77 1.7E-05 46.7 3.3 27 252-278 31-57 (226)
245 PRK13695 putative NTPase; Prov 85.0 0.82 1.8E-05 44.7 3.3 24 257-280 3-26 (174)
246 PRK11629 lolD lipoprotein tran 84.8 0.75 1.6E-05 47.0 3.1 26 252-277 33-58 (233)
247 PRK06067 flagellar accessory p 84.8 1.1 2.4E-05 45.9 4.3 28 253-280 24-51 (234)
248 cd03294 ABC_Pro_Gly_Bertaine T 84.8 0.73 1.6E-05 48.5 3.1 27 252-278 48-74 (269)
249 PRK04328 hypothetical protein; 84.8 1.1 2.4E-05 46.8 4.4 27 253-279 22-48 (249)
250 PRK13541 cytochrome c biogenes 84.7 0.78 1.7E-05 45.7 3.1 26 252-277 24-49 (195)
251 PRK14247 phosphate ABC transpo 84.7 0.75 1.6E-05 47.5 3.1 26 252-277 27-52 (250)
252 PRK03731 aroL shikimate kinase 84.7 0.87 1.9E-05 44.1 3.3 24 255-278 3-26 (171)
253 cd03298 ABC_ThiQ_thiamine_tran 84.7 0.77 1.7E-05 46.1 3.1 26 252-277 22-47 (211)
254 TIGR02203 MsbA_lipidA lipid A 84.7 0.63 1.4E-05 53.8 2.8 28 252-279 356-383 (571)
255 PRK11248 tauB taurine transpor 84.7 0.75 1.6E-05 48.1 3.1 27 252-278 25-51 (255)
256 PRK13768 GTPase; Provisional 84.6 0.94 2E-05 47.6 3.8 27 256-282 4-30 (253)
257 TIGR02746 TraC-F-type type-IV 84.6 0.99 2.1E-05 54.6 4.5 30 253-282 429-458 (797)
258 PRK02496 adk adenylate kinase; 84.6 0.84 1.8E-05 44.9 3.2 23 256-278 3-25 (184)
259 PF06745 KaiC: KaiC; InterPro 84.6 0.87 1.9E-05 46.3 3.4 28 253-280 18-45 (226)
260 TIGR00152 dephospho-CoA kinase 84.5 0.74 1.6E-05 45.6 2.8 46 257-302 2-53 (188)
261 PRK14732 coaE dephospho-CoA ki 84.5 0.56 1.2E-05 47.5 2.0 47 257-303 2-53 (196)
262 PRK14957 DNA polymerase III su 84.5 1.2 2.6E-05 52.1 4.9 54 224-280 7-64 (546)
263 cd03261 ABC_Org_Solvent_Resist 84.5 0.79 1.7E-05 46.9 3.1 26 252-277 24-49 (235)
264 PRK13538 cytochrome c biogenes 84.5 0.81 1.8E-05 45.9 3.1 27 252-278 25-51 (204)
265 cd04155 Arl3 Arl3 subfamily. 84.4 1 2.3E-05 42.9 3.7 30 246-275 6-35 (173)
266 cd03257 ABC_NikE_OppD_transpor 84.4 0.78 1.7E-05 46.4 3.0 26 252-277 29-54 (228)
267 smart00072 GuKc Guanylate kina 84.4 0.78 1.7E-05 45.4 2.9 23 256-278 4-26 (184)
268 cd02026 PRK Phosphoribulokinas 84.3 0.79 1.7E-05 48.8 3.1 22 257-278 2-23 (273)
269 cd03267 ABC_NatA_like Similar 84.3 0.79 1.7E-05 47.2 3.0 25 252-276 45-69 (236)
270 PRK13540 cytochrome c biogenes 84.3 0.83 1.8E-05 45.7 3.1 26 252-277 25-50 (200)
271 PRK13645 cbiO cobalt transport 84.3 0.75 1.6E-05 48.9 2.9 27 252-278 35-61 (289)
272 PF04665 Pox_A32: Poxvirus A32 84.3 0.82 1.8E-05 48.1 3.1 26 255-280 14-39 (241)
273 PF13173 AAA_14: AAA domain 84.3 0.98 2.1E-05 42.0 3.4 26 254-279 2-27 (128)
274 COG2274 SunT ABC-type bacterio 84.2 0.56 1.2E-05 56.4 2.1 28 253-280 498-525 (709)
275 PRK04195 replication factor C 84.2 1.1 2.3E-05 51.4 4.3 27 252-278 37-63 (482)
276 TIGR02204 MsbA_rel ABC transpo 84.2 0.7 1.5E-05 53.6 2.9 28 252-279 364-391 (576)
277 TIGR02903 spore_lon_C ATP-depe 84.2 1.3 2.8E-05 52.6 5.0 35 246-280 167-201 (615)
278 TIGR02640 gas_vesic_GvpN gas v 84.1 1.3 2.9E-05 46.5 4.7 40 235-277 5-44 (262)
279 TIGR00635 ruvB Holliday juncti 84.1 1.3 2.9E-05 46.9 4.7 27 252-278 28-54 (305)
280 PRK14251 phosphate ABC transpo 84.1 0.83 1.8E-05 47.2 3.1 27 252-278 28-54 (251)
281 PRK14248 phosphate ABC transpo 84.1 0.83 1.8E-05 47.9 3.1 26 252-277 45-70 (268)
282 PRK05973 replicative DNA helic 84.1 1.2 2.6E-05 46.8 4.2 31 252-282 62-92 (237)
283 COG0802 Predicted ATPase or ki 84.1 2 4.3E-05 42.2 5.4 29 252-280 23-51 (149)
284 PF01695 IstB_IS21: IstB-like 84.1 1.1 2.4E-05 44.6 3.9 29 252-280 45-73 (178)
285 PF00448 SRP54: SRP54-type pro 84.1 1 2.2E-05 45.7 3.6 28 254-281 1-28 (196)
286 TIGR02237 recomb_radB DNA repa 84.0 1.3 2.7E-05 44.4 4.3 28 253-280 11-38 (209)
287 cd03237 ABC_RNaseL_inhibitor_d 84.0 0.84 1.8E-05 47.7 3.1 26 253-278 24-49 (246)
288 cd03247 ABCC_cytochrome_bd The 84.0 0.87 1.9E-05 44.7 3.1 27 252-278 26-52 (178)
289 TIGR02323 CP_lyasePhnK phospho 84.0 0.82 1.8E-05 47.3 3.0 26 252-277 27-52 (253)
290 TIGR03881 KaiC_arch_4 KaiC dom 84.0 1.4 3E-05 44.9 4.6 28 253-280 19-46 (229)
291 cd03250 ABCC_MRP_domain1 Domai 83.9 0.87 1.9E-05 45.5 3.1 27 252-278 29-55 (204)
292 PRK13657 cyclic beta-1,2-gluca 83.9 0.61 1.3E-05 54.4 2.2 28 252-279 359-386 (588)
293 PRK09493 glnQ glutamine ABC tr 83.9 0.87 1.9E-05 46.7 3.1 27 252-278 25-51 (240)
294 PRK10247 putative ABC transpor 83.9 0.88 1.9E-05 46.4 3.1 26 252-277 31-56 (225)
295 PF06414 Zeta_toxin: Zeta toxi 83.9 0.99 2.1E-05 45.3 3.4 30 250-279 11-40 (199)
296 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 83.9 0.85 1.8E-05 46.6 3.0 26 252-277 46-71 (224)
297 PRK05342 clpX ATP-dependent pr 83.8 1.5 3.2E-05 49.7 5.1 25 254-278 108-132 (412)
298 COG4172 ABC-type uncharacteriz 83.8 0.62 1.4E-05 52.4 2.1 28 254-281 36-63 (534)
299 PRK11174 cysteine/glutathione 83.8 0.59 1.3E-05 54.4 2.1 27 252-278 374-400 (588)
300 TIGR01277 thiQ thiamine ABC tr 83.8 0.85 1.8E-05 46.0 3.0 27 252-278 22-48 (213)
301 cd03232 ABC_PDR_domain2 The pl 83.8 0.88 1.9E-05 45.3 3.0 25 252-276 31-55 (192)
302 PRK04220 2-phosphoglycerate ki 83.8 1.3 2.9E-05 48.0 4.6 27 252-278 90-116 (301)
303 PRK10646 ADP-binding protein; 83.8 1.9 4E-05 42.5 5.2 25 254-278 28-52 (153)
304 PRK11247 ssuB aliphatic sulfon 83.8 0.85 1.9E-05 47.9 3.0 27 252-278 36-62 (257)
305 PRK14963 DNA polymerase III su 83.8 1.2 2.6E-05 51.6 4.5 45 234-281 19-63 (504)
306 cd01394 radB RadB. The archaea 83.7 1.4 2.9E-05 44.5 4.4 37 245-281 8-46 (218)
307 cd03214 ABC_Iron-Siderophores_ 83.7 0.93 2E-05 44.6 3.1 26 252-277 23-48 (180)
308 cd03254 ABCC_Glucan_exporter_l 83.7 0.89 1.9E-05 46.2 3.0 27 252-278 27-53 (229)
309 PRK14530 adenylate kinase; Pro 83.7 0.94 2E-05 45.9 3.2 23 256-278 5-27 (215)
310 cd03263 ABC_subfamily_A The AB 83.7 0.91 2E-05 45.8 3.1 26 252-277 26-51 (220)
311 cd03215 ABC_Carb_Monos_II This 83.7 0.9 1.9E-05 44.8 3.0 27 252-278 24-50 (182)
312 PRK11300 livG leucine/isoleuci 83.7 0.91 2E-05 46.9 3.2 27 252-278 29-55 (255)
313 PRK10790 putative multidrug tr 83.7 0.65 1.4E-05 54.2 2.3 28 252-279 365-392 (592)
314 PF14532 Sigma54_activ_2: Sigm 83.6 0.51 1.1E-05 44.5 1.2 25 252-276 19-43 (138)
315 PF12775 AAA_7: P-loop contain 83.6 1.9 4E-05 46.0 5.5 41 235-276 15-55 (272)
316 PRK14267 phosphate ABC transpo 83.5 0.9 2E-05 47.0 3.1 27 252-278 28-54 (253)
317 cd03252 ABCC_Hemolysin The ABC 83.5 0.89 1.9E-05 46.5 3.0 27 252-278 26-52 (237)
318 PRK10436 hypothetical protein; 83.5 0.86 1.9E-05 52.3 3.1 36 244-280 209-244 (462)
319 PRK10419 nikE nickel transport 83.5 0.88 1.9E-05 47.9 3.0 25 252-276 36-60 (268)
320 PRK13947 shikimate kinase; Pro 83.5 1.1 2.3E-05 43.3 3.4 23 256-278 3-25 (171)
321 TIGR02858 spore_III_AA stage I 83.5 1.1 2.5E-05 47.7 3.8 41 239-279 96-136 (270)
322 PRK13648 cbiO cobalt transport 83.5 0.91 2E-05 47.7 3.1 26 252-277 33-58 (269)
323 TIGR00041 DTMP_kinase thymidyl 83.5 1.2 2.5E-05 44.0 3.7 27 254-280 3-29 (195)
324 cd03238 ABC_UvrA The excision 83.4 0.95 2.1E-05 45.1 3.1 24 252-275 19-42 (176)
325 cd03290 ABCC_SUR1_N The SUR do 83.4 0.93 2E-05 45.8 3.0 26 252-277 25-50 (218)
326 PRK14969 DNA polymerase III su 83.4 1.4 3.1E-05 51.3 4.9 52 225-280 8-64 (527)
327 TIGR03005 ectoine_ehuA ectoine 83.4 0.92 2E-05 47.0 3.1 26 252-277 24-49 (252)
328 PRK11264 putative amino-acid A 83.4 0.94 2E-05 46.7 3.1 27 252-278 27-53 (250)
329 PRK14250 phosphate ABC transpo 83.4 0.92 2E-05 46.8 3.1 26 252-277 27-52 (241)
330 TIGR01189 ccmA heme ABC export 83.3 1 2.2E-05 45.0 3.2 26 252-277 24-49 (198)
331 PRK14238 phosphate transporter 83.3 0.91 2E-05 47.8 3.0 27 252-278 48-74 (271)
332 COG4172 ABC-type uncharacteriz 83.3 0.72 1.6E-05 52.0 2.3 31 251-281 310-340 (534)
333 cd00046 DEXDc DEAD-like helica 83.3 1.2 2.6E-05 39.5 3.4 26 256-281 2-27 (144)
334 TIGR00968 3a0106s01 sulfate AB 83.3 0.95 2.1E-05 46.5 3.1 27 252-278 24-50 (237)
335 PRK10744 pstB phosphate transp 83.3 0.92 2E-05 47.3 3.0 27 252-278 37-63 (260)
336 PRK00023 cmk cytidylate kinase 83.3 1 2.2E-05 46.6 3.3 26 254-279 4-29 (225)
337 TIGR02324 CP_lyasePhnL phospho 83.2 0.96 2.1E-05 45.8 3.1 27 252-278 32-58 (224)
338 PRK14273 phosphate ABC transpo 83.2 0.94 2E-05 46.9 3.1 27 252-278 31-57 (254)
339 cd03222 ABC_RNaseL_inhibitor T 83.2 0.93 2E-05 45.3 2.9 27 252-278 23-49 (177)
340 PRK09087 hypothetical protein; 83.1 1.6 3.5E-05 45.1 4.7 24 253-276 43-66 (226)
341 PRK06620 hypothetical protein; 83.1 1.7 3.7E-05 44.6 4.9 20 255-274 45-64 (214)
342 cd03295 ABC_OpuCA_Osmoprotecti 83.1 0.98 2.1E-05 46.5 3.1 25 252-276 25-49 (242)
343 PLN02318 phosphoribulokinase/u 83.1 1.5 3.2E-05 51.9 4.8 44 235-278 45-89 (656)
344 TIGR03740 galliderm_ABC gallid 83.1 1 2.2E-05 45.7 3.1 26 252-277 24-49 (223)
345 cd00879 Sar1 Sar1 subfamily. 83.1 1.8 4E-05 42.1 4.9 39 237-275 2-40 (190)
346 PRK14950 DNA polymerase III su 83.1 1.5 3.4E-05 51.5 5.1 45 234-281 21-65 (585)
347 COG2805 PilT Tfp pilus assembl 83.0 1 2.2E-05 49.0 3.2 77 195-280 70-151 (353)
348 TIGR03878 thermo_KaiC_2 KaiC d 83.0 1.3 2.9E-05 46.5 4.1 29 253-281 35-63 (259)
349 cd03233 ABC_PDR_domain1 The pl 82.9 0.99 2.2E-05 45.4 3.0 27 252-278 31-57 (202)
350 PRK09435 membrane ATPase/prote 82.9 2.4 5.2E-05 46.7 6.1 31 251-281 53-83 (332)
351 cd03231 ABC_CcmA_heme_exporter 82.9 1 2.2E-05 45.2 3.0 27 252-278 24-50 (201)
352 PRK14255 phosphate ABC transpo 82.9 0.99 2.1E-05 46.7 3.1 25 252-276 29-53 (252)
353 TIGR01193 bacteriocin_ABC ABC- 82.8 0.74 1.6E-05 55.0 2.4 27 253-279 499-525 (708)
354 cd03213 ABCG_EPDR ABCG transpo 82.8 1 2.2E-05 45.0 3.1 26 252-277 33-58 (194)
355 TIGR00679 hpr-ser Hpr(Ser) kin 82.8 1.1 2.3E-05 48.8 3.4 24 254-277 146-169 (304)
356 cd03246 ABCC_Protease_Secretio 82.8 1.1 2.3E-05 43.9 3.1 27 252-278 26-52 (173)
357 COG4619 ABC-type uncharacteriz 82.8 0.95 2.1E-05 45.7 2.7 24 253-276 28-51 (223)
358 PRK14240 phosphate transporter 82.7 1 2.2E-05 46.5 3.1 26 252-277 27-52 (250)
359 PRK10771 thiQ thiamine transpo 82.7 1 2.2E-05 46.1 3.0 26 252-277 23-48 (232)
360 PRK10418 nikD nickel transport 82.7 1 2.2E-05 46.9 3.0 27 252-278 27-53 (254)
361 PRK13632 cbiO cobalt transport 82.6 1 2.2E-05 47.4 3.0 27 252-278 33-59 (271)
362 KOG0922 DEAH-box RNA helicase 82.6 2.4 5.1E-05 50.2 6.2 112 237-356 52-179 (674)
363 cd03244 ABCC_MRP_domain2 Domai 82.6 1.1 2.3E-05 45.3 3.1 27 252-278 28-54 (221)
364 PRK13543 cytochrome c biogenes 82.6 1 2.3E-05 45.5 3.0 26 252-277 35-60 (214)
365 cd03216 ABC_Carb_Monos_I This 82.6 1.1 2.3E-05 43.7 3.0 26 252-277 24-49 (163)
366 cd03228 ABCC_MRP_Like The MRP 82.6 1.1 2.4E-05 43.7 3.1 26 252-277 26-51 (171)
367 KOG0924 mRNA splicing factor A 82.6 1.3 2.8E-05 52.5 4.0 120 237-362 357-492 (1042)
368 PRK14955 DNA polymerase III su 82.6 1.9 4.1E-05 48.2 5.3 37 244-280 27-64 (397)
369 cd03236 ABC_RNaseL_inhibitor_d 82.6 0.73 1.6E-05 48.5 1.9 31 252-282 24-54 (255)
370 PLN02796 D-glycerate 3-kinase 82.5 1 2.3E-05 49.7 3.2 24 256-279 102-125 (347)
371 CHL00081 chlI Mg-protoporyphyr 82.5 1.6 3.6E-05 48.3 4.7 31 251-281 35-65 (350)
372 PRK10619 histidine/lysine/argi 82.5 1.1 2.3E-05 46.7 3.1 27 252-278 29-55 (257)
373 PRK14269 phosphate ABC transpo 82.5 1.1 2.3E-05 46.4 3.1 26 252-277 26-51 (246)
374 cd03249 ABC_MTABC3_MDL1_MDL2 M 82.4 1 2.2E-05 46.1 2.9 27 252-278 27-53 (238)
375 TIGR00101 ureG urease accessor 82.4 1.3 2.7E-05 45.0 3.5 26 255-280 2-27 (199)
376 PRK14239 phosphate transporter 82.4 1.1 2.3E-05 46.3 3.1 25 252-276 29-53 (252)
377 PRK08154 anaerobic benzoate ca 82.3 1.8 3.8E-05 46.9 4.8 42 237-278 116-157 (309)
378 PRK11701 phnK phosphonate C-P 82.2 1 2.3E-05 46.8 3.0 26 252-277 30-55 (258)
379 PRK06526 transposase; Provisio 82.2 1.3 2.8E-05 46.8 3.6 30 253-282 97-126 (254)
380 TIGR03411 urea_trans_UrtD urea 82.2 1.1 2.4E-05 45.9 3.1 27 252-278 26-52 (242)
381 cd03248 ABCC_TAP TAP, the Tran 82.2 1.1 2.4E-05 45.4 3.1 26 252-277 38-63 (226)
382 PRK13646 cbiO cobalt transport 82.1 1.1 2.3E-05 47.8 3.0 27 252-278 31-57 (286)
383 PRK14274 phosphate ABC transpo 82.1 1.2 2.5E-05 46.5 3.2 27 252-278 36-62 (259)
384 TIGR01288 nodI ATP-binding ABC 82.1 1.1 2.4E-05 48.1 3.1 27 252-278 28-54 (303)
385 PRK13638 cbiO cobalt transport 82.1 1 2.2E-05 47.3 2.9 26 252-277 25-50 (271)
386 PRK14270 phosphate ABC transpo 82.1 1.1 2.4E-05 46.3 3.1 26 252-277 28-53 (251)
387 cd03283 ABC_MutS-like MutS-lik 82.1 1 2.2E-05 45.7 2.7 21 255-275 26-46 (199)
388 TIGR02538 type_IV_pilB type IV 82.0 1 2.3E-05 52.8 3.1 26 254-279 316-341 (564)
389 cd01428 ADK Adenylate kinase ( 82.0 1.2 2.5E-05 43.8 3.0 22 257-278 2-23 (194)
390 PRK05537 bifunctional sulfate 82.0 1.2 2.6E-05 52.4 3.6 44 235-280 375-418 (568)
391 cd03217 ABC_FeS_Assembly ABC-t 82.0 1.2 2.5E-05 44.8 3.1 26 252-277 24-49 (200)
392 TIGR02857 CydD thiol reductant 82.0 0.78 1.7E-05 52.7 2.1 27 252-278 346-372 (529)
393 COG1123 ATPase components of v 81.9 1 2.2E-05 52.4 3.0 29 252-280 315-343 (539)
394 cd00267 ABC_ATPase ABC (ATP-bi 81.9 1.2 2.6E-05 42.6 3.0 25 252-276 23-47 (157)
395 PRK14237 phosphate transporter 81.9 1.1 2.5E-05 46.9 3.1 26 252-277 44-69 (267)
396 TIGR03771 anch_rpt_ABC anchore 81.9 1.1 2.5E-05 45.6 3.1 26 253-278 5-30 (223)
397 PRK11831 putative ABC transpor 81.9 1.1 2.4E-05 47.1 3.0 26 252-277 31-56 (269)
398 PRK14263 phosphate ABC transpo 81.9 1.1 2.5E-05 46.9 3.1 27 252-278 32-58 (261)
399 TIGR00929 VirB4_CagE type IV s 81.9 1.3 2.9E-05 53.3 4.1 31 253-283 433-463 (785)
400 TIGR00017 cmk cytidylate kinas 81.9 1.3 2.8E-05 45.6 3.4 23 256-278 4-26 (217)
401 PRK09544 znuC high-affinity zi 81.9 1.2 2.5E-05 46.7 3.1 27 252-278 28-54 (251)
402 PRK06921 hypothetical protein; 81.9 2.4 5.1E-05 45.1 5.5 28 253-280 116-143 (266)
403 COG0630 VirB11 Type IV secreto 81.9 1.5 3.2E-05 47.8 4.0 39 240-279 130-168 (312)
404 PRK14241 phosphate transporter 81.9 1.1 2.5E-05 46.5 3.1 27 252-278 28-54 (258)
405 PLN02348 phosphoribulokinase 81.8 1.9 4.1E-05 48.5 4.9 28 252-279 47-74 (395)
406 cd03369 ABCC_NFT1 Domain 2 of 81.8 1.2 2.6E-05 44.7 3.1 27 252-278 32-58 (207)
407 PRK10575 iron-hydroxamate tran 81.8 1.1 2.3E-05 47.1 2.8 26 252-277 35-60 (265)
408 PTZ00112 origin recognition co 81.7 3.2 7E-05 51.1 7.0 38 244-281 770-808 (1164)
409 COG1136 SalX ABC-type antimicr 81.7 1 2.2E-05 47.0 2.7 22 253-274 30-51 (226)
410 PRK14268 phosphate ABC transpo 81.7 1.2 2.5E-05 46.5 3.1 26 252-277 36-61 (258)
411 PRK15056 manganese/iron transp 81.7 1.1 2.5E-05 47.1 3.0 26 252-277 31-56 (272)
412 PRK13548 hmuV hemin importer A 81.6 1.1 2.4E-05 46.7 2.9 26 252-277 26-51 (258)
413 PRK14959 DNA polymerase III su 81.6 1.7 3.7E-05 51.6 4.7 53 224-280 7-64 (624)
414 PF03215 Rad17: Rad17 cell cyc 81.6 1.8 3.8E-05 50.5 4.8 37 242-278 32-69 (519)
415 cd01128 rho_factor Transcripti 81.6 0.8 1.7E-05 48.3 1.8 36 244-279 6-41 (249)
416 PRK14272 phosphate ABC transpo 81.5 1.2 2.6E-05 46.0 3.1 27 252-278 28-54 (252)
417 PRK10895 lipopolysaccharide AB 81.5 1.2 2.6E-05 45.7 3.1 26 252-277 27-52 (241)
418 cd03112 CobW_like The function 81.5 1.1 2.4E-05 43.5 2.7 21 257-277 3-23 (158)
419 PRK14265 phosphate ABC transpo 81.5 1.2 2.6E-05 47.1 3.1 26 252-277 44-69 (274)
420 PRK09099 type III secretion sy 81.4 4.3 9.2E-05 46.4 7.6 35 243-277 152-186 (441)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 81.4 1.2 2.6E-05 42.5 2.8 26 252-277 24-49 (144)
422 PRK14262 phosphate ABC transpo 81.4 1.2 2.6E-05 46.0 3.0 26 252-277 27-52 (250)
423 PRK09984 phosphonate/organopho 81.4 1.2 2.6E-05 46.5 3.0 26 252-277 28-53 (262)
424 COG1132 MdlB ABC-type multidru 81.4 0.92 2E-05 52.7 2.4 29 252-280 353-381 (567)
425 TIGR01188 drrA daunorubicin re 81.3 1.2 2.6E-05 47.7 3.1 27 252-278 17-43 (302)
426 PRK14256 phosphate ABC transpo 81.3 1.2 2.6E-05 46.0 3.1 26 252-277 28-53 (252)
427 PRK14259 phosphate ABC transpo 81.3 1.2 2.6E-05 46.8 3.1 26 252-277 37-62 (269)
428 PRK14244 phosphate ABC transpo 81.2 1.3 2.7E-05 45.9 3.1 27 252-278 29-55 (251)
429 PRK08972 fliI flagellum-specif 81.2 2.8 6E-05 47.9 6.0 40 237-276 145-184 (444)
430 PF13086 AAA_11: AAA domain; P 81.2 1.8 3.9E-05 42.8 4.1 23 256-278 19-41 (236)
431 PRK00279 adk adenylate kinase; 81.2 1.4 3E-05 44.7 3.3 24 256-279 2-25 (215)
432 TIGR03880 KaiC_arch_3 KaiC dom 81.1 2.1 4.5E-05 43.5 4.6 30 253-282 15-44 (224)
433 PRK14235 phosphate transporter 81.1 1.3 2.8E-05 46.6 3.1 27 252-278 43-69 (267)
434 PRK11131 ATP-dependent RNA hel 81.0 2.2 4.8E-05 54.4 5.6 99 252-356 87-202 (1294)
435 PRK11144 modC molybdate transp 81.0 1.2 2.6E-05 48.9 3.1 26 252-277 22-47 (352)
436 PRK14260 phosphate ABC transpo 81.0 1.2 2.7E-05 46.3 3.0 27 252-278 31-57 (259)
437 PRK13946 shikimate kinase; Pro 81.0 1.3 2.9E-05 43.8 3.1 26 253-278 9-34 (184)
438 PF10412 TrwB_AAD_bind: Type I 81.0 1.1 2.4E-05 50.0 2.7 33 249-281 10-42 (386)
439 PRK14243 phosphate transporter 81.0 1.3 2.8E-05 46.5 3.1 26 252-277 34-59 (264)
440 PRK13649 cbiO cobalt transport 80.9 1.2 2.7E-05 46.9 3.0 26 252-277 31-56 (280)
441 PRK14271 phosphate ABC transpo 80.9 1.3 2.8E-05 46.9 3.1 26 252-277 45-70 (276)
442 PRK14493 putative bifunctional 80.9 1.5 3.3E-05 46.8 3.7 27 256-282 3-29 (274)
443 TIGR02982 heterocyst_DevA ABC 80.9 1.3 2.9E-05 44.8 3.1 26 252-277 29-54 (220)
444 TIGR03238 dnd_assoc_3 dnd syst 80.9 1.6 3.6E-05 50.2 4.1 21 252-272 30-50 (504)
445 TIGR03797 NHPM_micro_ABC2 NHPM 80.9 0.84 1.8E-05 54.3 1.9 29 252-280 477-505 (686)
446 PRK07429 phosphoribulokinase; 80.8 1.3 2.7E-05 48.7 3.1 26 253-278 7-32 (327)
447 PRK07952 DNA replication prote 80.7 2.1 4.5E-05 45.1 4.6 29 254-282 99-127 (244)
448 PRK14958 DNA polymerase III su 80.7 2.1 4.5E-05 49.7 4.9 53 224-280 7-64 (509)
449 cd03264 ABC_drug_resistance_li 80.7 1.2 2.7E-05 44.6 2.8 22 256-277 27-48 (211)
450 PRK01184 hypothetical protein; 80.7 1.3 2.8E-05 43.5 2.8 18 256-273 3-20 (184)
451 PRK13949 shikimate kinase; Pro 80.7 1.4 3.1E-05 43.3 3.2 23 256-278 3-25 (169)
452 TIGR01351 adk adenylate kinase 80.7 1.3 2.9E-05 44.7 3.0 22 257-278 2-23 (210)
453 cd03251 ABCC_MsbA MsbA is an e 80.7 1.3 2.9E-05 45.0 3.0 27 252-278 26-52 (234)
454 COG2804 PulE Type II secretory 80.7 1.3 2.9E-05 50.9 3.3 39 241-280 246-284 (500)
455 TIGR02769 nickel_nikE nickel i 80.7 1.3 2.9E-05 46.3 3.1 26 252-277 35-60 (265)
456 PRK14532 adenylate kinase; Pro 80.6 1.4 3.1E-05 43.3 3.1 23 256-278 2-24 (188)
457 PRK03695 vitamin B12-transport 80.5 1.2 2.7E-05 46.2 2.8 26 252-277 20-45 (248)
458 PF08477 Miro: Miro-like prote 80.5 1.5 3.3E-05 39.2 3.0 19 257-275 2-20 (119)
459 TIGR02397 dnaX_nterm DNA polym 80.5 2.8 6.1E-05 45.3 5.6 30 251-280 33-62 (355)
460 PRK13631 cbiO cobalt transport 80.5 1.3 2.8E-05 48.1 3.0 27 252-278 50-76 (320)
461 TIGR03375 type_I_sec_LssB type 80.5 0.94 2E-05 54.0 2.1 27 253-279 490-516 (694)
462 PRK14734 coaE dephospho-CoA ki 80.4 1 2.3E-05 45.6 2.1 21 256-276 3-23 (200)
463 PRK15112 antimicrobial peptide 80.4 1.3 2.9E-05 46.4 3.0 27 252-278 37-63 (267)
464 PRK14253 phosphate ABC transpo 80.4 1.4 3E-05 45.5 3.1 26 252-277 27-52 (249)
465 cd03253 ABCC_ATM1_transporter 80.4 1.4 3E-05 45.0 3.0 27 252-278 25-51 (236)
466 PRK13547 hmuV hemin importer A 80.4 1.3 2.9E-05 46.9 3.0 26 252-277 25-50 (272)
467 CHL00131 ycf16 sulfate ABC tra 80.4 1.3 2.9E-05 45.6 3.0 25 252-276 31-55 (252)
468 PRK10851 sulfate/thiosulfate t 80.3 1.3 2.9E-05 48.8 3.1 26 252-277 26-51 (353)
469 KOG0056 Heavy metal exporter H 80.3 1.3 2.9E-05 50.9 3.0 32 253-284 563-594 (790)
470 PRK09580 sufC cysteine desulfu 80.2 1.3 2.8E-05 45.6 2.8 26 252-277 25-50 (248)
471 PRK08699 DNA polymerase III su 80.2 2.5 5.3E-05 46.3 5.0 39 243-281 8-48 (325)
472 PRK10253 iron-enterobactin tra 80.1 1.3 2.8E-05 46.4 2.8 25 252-276 31-55 (265)
473 PRK11614 livF leucine/isoleuci 80.1 1.4 3.1E-05 45.1 3.0 25 252-276 29-53 (237)
474 PRK05642 DNA replication initi 80.1 3.3 7.2E-05 42.9 5.8 26 255-280 46-71 (234)
475 cd01876 YihA_EngB The YihA (En 80.1 1.3 2.9E-05 40.9 2.6 19 257-275 2-20 (170)
476 PRK13341 recombination factor 80.0 2.1 4.6E-05 51.7 4.9 36 243-278 41-76 (725)
477 PRK10463 hydrogenase nickel in 80.0 2.7 5.8E-05 45.5 5.1 37 244-280 94-130 (290)
478 PRK14252 phosphate ABC transpo 80.0 1.5 3.2E-05 46.0 3.1 25 252-276 40-64 (265)
479 cd03114 ArgK-like The function 80.0 2 4.2E-05 41.6 3.8 26 257-282 2-27 (148)
480 COG1428 Deoxynucleoside kinase 80.0 1.5 3.4E-05 45.3 3.2 43 254-301 4-46 (216)
481 PRK05439 pantothenate kinase; 79.9 2.8 6.1E-05 45.7 5.3 30 251-280 83-112 (311)
482 PRK09183 transposase/IS protei 79.8 1.8 3.9E-05 45.7 3.7 28 253-280 101-128 (259)
483 TIGR00362 DnaA chromosomal rep 79.8 3 6.4E-05 46.6 5.7 27 255-281 137-163 (405)
484 PRK13639 cbiO cobalt transport 79.8 1.4 3.1E-05 46.5 3.0 26 252-277 26-51 (275)
485 TIGR00958 3a01208 Conjugate Tr 79.8 1.2 2.6E-05 53.4 2.7 28 252-279 505-532 (711)
486 PF13476 AAA_23: AAA domain; P 79.7 1.9 4.1E-05 41.9 3.6 25 254-278 19-43 (202)
487 PRK00625 shikimate kinase; Pro 79.7 1.7 3.6E-05 43.3 3.2 23 256-278 2-24 (173)
488 TIGR03873 F420-0_ABC_ATP propo 79.6 1.5 3.2E-05 45.7 3.0 25 252-276 25-49 (256)
489 PRK13652 cbiO cobalt transport 79.6 1.5 3.2E-05 46.4 3.1 26 252-277 28-53 (277)
490 TIGR00382 clpX endopeptidase C 79.6 2.4 5.2E-05 48.0 4.8 24 255-278 117-140 (413)
491 PRK11231 fecE iron-dicitrate t 79.6 1.5 3.3E-05 45.5 3.1 26 252-277 26-51 (255)
492 cd00984 DnaB_C DnaB helicase C 79.6 2.1 4.5E-05 43.7 4.0 30 252-281 11-40 (242)
493 PF13177 DNA_pol3_delta2: DNA 79.5 3.2 7E-05 40.6 5.2 33 250-282 15-47 (162)
494 COG1474 CDC6 Cdc6-related prot 79.5 2.3 5E-05 47.3 4.6 40 244-283 32-71 (366)
495 cd03299 ABC_ModC_like Archeal 79.4 1.5 3.3E-05 45.0 3.0 25 252-276 23-47 (235)
496 PRK00080 ruvB Holliday junctio 79.4 1.6 3.4E-05 47.3 3.3 28 252-279 49-76 (328)
497 COG1131 CcmA ABC-type multidru 79.4 1.6 3.5E-05 46.9 3.3 29 252-280 29-57 (293)
498 TIGR03796 NHPM_micro_ABC1 NHPM 79.4 1.1 2.3E-05 53.6 2.1 28 252-279 503-530 (710)
499 PRK14266 phosphate ABC transpo 79.4 1.6 3.4E-05 45.1 3.1 26 252-277 27-52 (250)
500 PRK14254 phosphate ABC transpo 79.3 1.5 3.3E-05 46.6 3.1 26 253-278 64-89 (285)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.8e-162 Score=1418.49 Aligned_cols=565 Identities=43% Similarity=0.680 Sum_probs=523.6
Q ss_pred ccCcEEEEecCCCCEEEEEEEeee--CCeeEEEc--CCCcEEEEecCCcc--cCCCCccCCcCCcccccCCCchhHHHHH
Q 005424 117 KKKLQSWFQLPNGNWELGKILSIS--GTESVISL--PEGKVLKVKSENLV--SANPDILDGVDDLMQLSYLNEPSVLYNL 190 (697)
Q Consensus 117 k~~~~vWv~~~~~~~~~~~v~s~~--~~~v~v~~--~~g~~~~v~~~~l~--~~np~~~~~veDL~~L~~LnE~sVL~nL 190 (697)
..|..||+|+.+.+|+.+.+.+.. +++++-.. .+|....++...+. ..+||+++++|||+.|++||||+|||||
T Consensus 7 ~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL 86 (1463)
T COG5022 7 EVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNL 86 (1463)
T ss_pred ccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHH
Confidence 457799999999999999999874 34333222 35655566655543 3557899999999999999999999999
Q ss_pred HHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChh
Q 005424 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268 (697)
Q Consensus 191 ~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKT 268 (697)
++||.+++||||+|.+|||||||+.+|+|+.++++.|+++.+. +|||||||+.||++|...++|||||||||||||||
T Consensus 87 ~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKT 166 (1463)
T COG5022 87 EKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKT 166 (1463)
T ss_pred HHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCch
Confidence 9999999999999999999999999999999999999999876 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-----CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCce
Q 005424 269 ETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (697)
Q Consensus 269 e~tK~il~yLa~~~~~~-----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSR 343 (697)
|+||+||||||++++++ +||++|+++||||||||||||+||||||||||||+|.||.+|.|+||+|++|||||||
T Consensus 167 e~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSR 246 (1463)
T COG5022 167 ENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR 246 (1463)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhh
Confidence 99999999999998764 6999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 005424 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (697)
Q Consensus 344 Vv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~i 423 (697)
||+|+.+|||||||||||+|.+.+.|+.+++..+.+|.||++++|..++|+||+++|+.|+.||+++||+++||.+||++
T Consensus 247 VV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~i 326 (1463)
T COG5022 247 VVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKI 326 (1463)
T ss_pred hccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEecCCHHHHHHHHHHHHHHHH
Q 005424 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (697)
Q Consensus 424 LAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY 503 (697)
||||||||||+|.. ++++.+.+.+.+.++.+|+|||||+..|.++|++|.|++|+|.|.+++|.+||..+||||||+||
T Consensus 327 LAaILhiGNIef~~-~r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY 405 (1463)
T COG5022 327 LAAILHIGNIEFKE-DRNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALY 405 (1463)
T ss_pred HHHHHhhcceeeee-cccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999985 44567888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCccccc
Q 005424 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (697)
Q Consensus 504 ~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i 583 (697)
++||+|||++||.+|..... ..+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+|||+|++|
T Consensus 406 ~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~I 484 (1463)
T COG5022 406 SNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFI 484 (1463)
T ss_pred HHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999986543 46899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHhhhc-CCcceeeecc-cccccCcchhhhhhhhhhhcc--c-ceeeeccCCCCceEEEeeecccccccchh
Q 005424 584 DFEDNKDCLNLFEK-VPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHA--F-GIFIQADLTGNFFMFCMVASITTDTKISM 658 (697)
Q Consensus 584 ~f~DN~~~ldLie~-kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~--f-g~~~~~~~~~~~F~i~h~a~~~~~~~~~~ 658 (697)
+|.|||+||||||+ .|.|||++|| +|.+|.|++.+|..|+...-. + .++-.+....+.|+|+|||+-
T Consensus 485 dy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgD-------- 556 (1463)
T COG5022 485 DYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGD-------- 556 (1463)
T ss_pred ccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeeccc--------
Confidence 99999999999998 5799999998 699999999999999865554 3 344445566668999999999
Q ss_pred hhHHHHHHHHHHhccccceeeee-eccCCCCccccc
Q 005424 659 NILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGV 693 (697)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 693 (697)
|.|.|+|||.||+|.|.-+.+ |+..|..+||--
T Consensus 557 --VeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~ 590 (1463)
T COG5022 557 --VEYDVEGFLDKNKDPLNDDLLELLKASTNEFVST 590 (1463)
T ss_pred --ceeeccchhhhCcchhhHHHHHHHhhccchHHHH
Confidence 999999999999999999888 999999888753
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.2e-159 Score=1387.98 Aligned_cols=567 Identities=32% Similarity=0.490 Sum_probs=527.0
Q ss_pred cccCcEEEE-------ecCCCCEEEEEEE-eeeCCeeEEEc---CCCcEEEEecCCcccCCCCc-cCCcCCcccccCCCc
Q 005424 116 GKKKLQSWF-------QLPNGNWELGKIL-SISGTESVISL---PEGKVLKVKSENLVSANPDI-LDGVDDLMQLSYLNE 183 (697)
Q Consensus 116 ~k~~~~vWv-------~~~~~~~~~~~v~-s~~~~~v~v~~---~~g~~~~v~~~~l~~~np~~-~~~veDL~~L~~LnE 183 (697)
..+|..||+ ++++++|+.|+|+ +..+++++|.. ++|++++|+.++++++||+. .++++||+.|++|||
T Consensus 30 ~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE 109 (821)
T PTZ00014 30 VLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNI 109 (821)
T ss_pred cccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCH
Confidence 346778888 6788999999999 88999998874 47999999999999999997 688999999999999
Q ss_pred hhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCC---CCCchhHHHHHHHHHHHhcCceeEEEEe
Q 005424 184 PSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI---ESPHVYAITDTAIREMIRDEVNQSIIIS 260 (697)
Q Consensus 184 ~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~---~~PHifavA~~Ay~~m~~~~~nQsIiiS 260 (697)
|+|||||+.||.+++||||+|++|||||||+++|+|++++++.|++... .|||||+||+.||++|...++|||||||
T Consensus 110 ~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiS 189 (821)
T PTZ00014 110 PCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVS 189 (821)
T ss_pred HHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 9999999999999999999999999999999999999999999998643 3899999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCCC---CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeee
Q 005424 261 GESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTF 337 (697)
Q Consensus 261 GESGAGKTe~tK~il~yLa~~~~~~---~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tY 337 (697)
|||||||||++|++|+|||..+++. +|+++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|++|
T Consensus 190 GESGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~Y 269 (821)
T PTZ00014 190 GESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAF 269 (821)
T ss_pred cCCCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEE
Confidence 9999999999999999999987643 6999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHH
Q 005424 338 LLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQ 417 (697)
Q Consensus 338 LLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~ 417 (697)
|||||||++|++||||||||||||+|+++++|++|+|.++.+|+||+++ |..++++||+++|+.|++||++|||+++|+
T Consensus 270 LLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~ 348 (821)
T PTZ00014 270 LLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPK-CLDVPGIDDVKDFEEVMESFDSMGLSESQI 348 (821)
T ss_pred eccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCC-CccCCCCchHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999965 889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCeeeEEeCC---CCceeecC--hhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEecCCHHHHH
Q 005424 418 ESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQAT 492 (697)
Q Consensus 418 ~~I~~iLAAILhLGNi~F~~~~~---~~~~~~~~--~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~lt~~qA~ 492 (697)
..||+|||||||||||+|...+. ++.+.+.+ .+.++.||+||||++++|.++||+|++.+|+|.+++++|++||.
T Consensus 349 ~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~ 428 (821)
T PTZ00014 349 EDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESE 428 (821)
T ss_pred HHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHH
Confidence 99999999999999999986532 24555554 45899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhh
Q 005424 493 DTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEE 572 (697)
Q Consensus 493 ~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~Eqee 572 (697)
.+||||||+||+|||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||||||+||+|||+.||+|
T Consensus 429 ~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~Eqee 507 (821)
T PTZ00014 429 MLKDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKL 507 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998653 3567999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccc-eeeeccC-CCCceEEEeeec
Q 005424 573 YIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFG-IFIQADL-TGNFFMFCMVAS 649 (697)
Q Consensus 573 Y~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg-~~~~~~~-~~~~F~i~h~a~ 649 (697)
|++|||+|+.|+|.||++|||||++||.|||+||| +|..|+|||..++.++...++-+ .+..+.. ..+.|.|+||||
T Consensus 508 Y~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG 587 (821)
T PTZ00014 508 YKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIG 587 (821)
T ss_pred HHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEece
Confidence 99999999999999999999999999999999998 58899999999999986655432 2333332 357899999999
Q ss_pred ccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccccc
Q 005424 650 ITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVM 694 (697)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 694 (697)
. |.|.+.+||+||+|.|.-+.+ ||.+|+++||..+
T Consensus 588 ~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~l 623 (821)
T PTZ00014 588 D----------IQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDL 623 (821)
T ss_pred e----------eeeccCcHHHhccccchHHHHHHHHhCccHHHHHH
Confidence 9 999999999999999998887 9999999998765
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.7e-153 Score=1318.53 Aligned_cols=519 Identities=76% Similarity=1.104 Sum_probs=495.3
Q ss_pred cCCCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCCCCchhHHHH
Q 005424 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITD 242 (697)
Q Consensus 163 ~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~ 242 (697)
|.||+.++++|||+.|++|||++||++|+.||.+++||||+|++||+||||+++|+|++++++.|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCCCchhhhhhhchHHHhhccccccCCCCCCccccEEEEE
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~ 322 (697)
+||+.|..+++||||||||||||||||++|++|+||+.++++++++++|+++||||||||||||++|+||||||||++|+
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~ 160 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIH 160 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHH
Q 005424 323 FSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402 (697)
Q Consensus 323 F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~ 402 (697)
|+.+|+|+||+|.+||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+.
T Consensus 161 f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 240 (677)
T cd01383 161 FSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHT 240 (677)
T ss_pred ECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceE
Q 005424 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 482 (697)
Q Consensus 403 l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i 482 (697)
+++||+.|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||++++.+++|.+
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 320 (677)
T cd01383 241 LVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNI 320 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceE
Confidence 99999999999999999999999999999999998777677888889999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhh
Q 005424 483 VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFN 562 (697)
Q Consensus 483 ~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn 562 (697)
.++++++||.++||||||+||+|||+|||.+||++|.++......+||||||||||+|+.||||||||||||||||++||
T Consensus 321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 400 (677)
T cd01383 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFN 400 (677)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997655557899999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccceeeeccCCCCc
Q 005424 563 RHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFGIFIQADLTGNF 641 (697)
Q Consensus 563 ~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg~~~~~~~~~~~ 641 (697)
+++|+.||++|++|||+|..|+|.||++|||||++||.|||+||| +|..|+|+|..++.++...++- ..++.......
T Consensus 401 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~-~~~~~~~~~~~ 479 (677)
T cd01383 401 RHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKT-NSCFRGERGGA 479 (677)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCC-CCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999998 5889999999999997544432 22233344678
Q ss_pred eEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccc
Q 005424 642 FMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVG 692 (697)
Q Consensus 642 F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 692 (697)
|+|+||||. |+|.|.+||+||+|.|.-+.+ ||++|+++++.
T Consensus 480 F~I~HyAG~----------V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~ 521 (677)
T cd01383 480 FTVRHYAGE----------VTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ 521 (677)
T ss_pred eEEEEeccc----------eeecCCChHHhccccccHHHHHHHHhCchHHHH
Confidence 999999999 999999999999999999888 99999988754
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.8e-151 Score=1301.73 Aligned_cols=515 Identities=43% Similarity=0.676 Sum_probs=487.4
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
+||||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|+++.++.|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988765 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC-CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCC
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETG 327 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~-~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G 327 (697)
+++++||||||||||||||||++|++|+||+.++++. .++++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 9999999999999999999999999999999998754 799999999999999999999999999999999999999999
Q ss_pred CccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHH
Q 005424 328 KISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEAL 407 (697)
Q Consensus 328 ~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al 407 (697)
+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+.++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCC--CCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEec
Q 005424 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485 (697)
Q Consensus 408 ~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~--~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~ 485 (697)
+.|||+++|+..||+||||||||||++|...+. .+.+++.+.+.++.||.||||++++|.++||++++.+++|.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999997642 356889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhh
Q 005424 486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHL 565 (697)
Q Consensus 486 lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~i 565 (697)
++++||.++||||||+||+|||+|||.+||++|.........+||||||||||+|+.||||||||||||||||++||+|+
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986434456899999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc-ceeeecc-CCCCce
Q 005424 566 FKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF-GIFIQAD-LTGNFF 642 (697)
Q Consensus 566 F~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f-g~~~~~~-~~~~~F 642 (697)
|+.||++|++|||+|.+|+|.||++|||||++||.|||+||| +|..|+|+|..++.++...|+. ..+..+. .....|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 999999999999999999999999999999999999999998 5888999999999998666654 3333333 236789
Q ss_pred EEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 643 MFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 643 ~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
+|+||||. |+|.|.+||+||+|.|.-+.+ ||++|++++|..|.
T Consensus 481 ~I~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf 524 (671)
T cd01381 481 GINHFAGV----------VFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIF 524 (671)
T ss_pred EEEEecce----------EeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHh
Confidence 99999999 999999999999999987777 99999999987663
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-152 Score=1385.21 Aligned_cols=586 Identities=41% Similarity=0.646 Sum_probs=561.4
Q ss_pred CCCCCcccCCccccccccccccccccCcEEEEecCCCCEEEEEEEeeeCCeeEEEcCCCcEEE-EecCCcccCCCCccCC
Q 005424 93 ASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLK-VKSENLVSANPDILDG 171 (697)
Q Consensus 93 ~~p~~~l~~~~~e~~~~q~~~~~~k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~~~g~~~~-v~~~~l~~~np~~~~~ 171 (697)
.++++|||++..++...++.||+.|+ +|||||++++|+.|.|++..|++|+|.+.++.+++ |+.++++|||||+|+.
T Consensus 6 ~~~~~~lr~~~~~~~~~~~~~~d~kk--~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk 83 (1930)
T KOG0161|consen 6 DPGWKYLRVSREERLDAQSRPFDSKK--WVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDK 83 (1930)
T ss_pred cccchhhcccHHHhhcccccchhhcc--eeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccc
Confidence 45669999999999999999999999 99999999999999999998888999998877776 9999999999999999
Q ss_pred cCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHH
Q 005424 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (697)
Q Consensus 172 veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~ 249 (697)
+|||++|+|||||+|||||++||.+++||||+|.+||+||||+++|||++++++.|+|+++. ||||||||+.||+.|+
T Consensus 84 ~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL 163 (1930)
T KOG0161|consen 84 VEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNML 163 (1930)
T ss_pred cccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776 9999999999999999
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC--------CCchhhhhhhchHHHhhccccccCCCCCCccccEEEE
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~--------~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L 321 (697)
.+++||||||+||||||||||||+||+|||.++++ +.++++|+++||||||||||+|++|+|||||||||+|
T Consensus 164 ~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI 243 (1930)
T KOG0161|consen 164 QDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRI 243 (1930)
T ss_pred hcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEE
Confidence 99999999999999999999999999999999876 4899999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCC-cccCccccCCCccccCCcchHHHH
Q 005424 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQF 400 (697)
Q Consensus 322 ~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~-~~~y~yL~qs~~~~~~~~dD~~~F 400 (697)
+|+.+|+|+||.|++||||||||++|+++||||||||||++|.++.+|..|.|++ +.+|.|++++.. .++++||+++|
T Consensus 244 ~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef 322 (1930)
T KOG0161|consen 244 HFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEF 322 (1930)
T ss_pred ecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999965 999999999866 89999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccc
Q 005424 401 RIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGND 480 (697)
Q Consensus 401 ~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e 480 (697)
+.|+.||++|||+++|+.+||+|+||||||||+.|+...+.+++++.+.++++++|.||||+.++|.++++++++++|++
T Consensus 323 ~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e 402 (1930)
T KOG0161|consen 323 QETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGRE 402 (1930)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccch
Confidence 99999999999999999999999999999999999988788899999999999999999999999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhh
Q 005424 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (697)
Q Consensus 481 ~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~ 560 (697)
.|.+..+.+|+..+..||||++|+|||.|||.+||++|+.. .+..+|||||||+|||+|+.||||||||||+|||||||
T Consensus 403 ~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqf 481 (1930)
T KOG0161|consen 403 WVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQF 481 (1930)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999976 55679999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc-ccceeeecc-
Q 005424 561 FNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH-AFGIFIQAD- 636 (697)
Q Consensus 561 Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~-~fg~~~~~~- 636 (697)
||||||.+||++|.+|||.|.+|||. |.++|||||++ |+|||+||| +|..|+.||.+++.+++..| +.+..++..
T Consensus 482 Fnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k 560 (1930)
T KOG0161|consen 482 FNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPK 560 (1930)
T ss_pred hcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcc
Confidence 99999999999999999999999998 99999999998 789999998 69999999999999998888 666666666
Q ss_pred --CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccc
Q 005424 637 --LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGV 693 (697)
Q Consensus 637 --~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 693 (697)
....-|.|.||||- |-|.|.+||.+|-|-|---+. ||..|++++|-.
T Consensus 561 ~~~~~~~F~l~HyaG~----------V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~ 610 (1930)
T KOG0161|consen 561 GKKAEAHFALVHYAGT----------VDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSS 610 (1930)
T ss_pred cccchhhhheeeecce----------eccCccchhhcCCCCchHHHHHHHHhcccHHHHH
Confidence 56777999999999 999999999999999988888 888888888744
No 6
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.5e-150 Score=1301.55 Aligned_cols=518 Identities=44% Similarity=0.687 Sum_probs=488.9
Q ss_pred CCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHH
Q 005424 166 PDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDT 243 (697)
Q Consensus 166 p~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~ 243 (697)
||.+++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC-----------CCchhhhhhhchHHHhhccccccCCCCC
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-----------SGIEYEILKTNPILEAFGNAKTSRNDNS 312 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~-----------~~ie~~Il~snpILEAFGNAKT~rNdNS 312 (697)
||++|.+.++||||||||||||||||++|+||+||+.++++ ..|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 99999999999999999999999999999999999999754 2689999999999999999999999999
Q ss_pred CccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCc-ccCccccCCCcccc
Q 005424 313 SRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSA-KEYKYLRQSSCYSI 391 (697)
Q Consensus 313 SRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~-~~y~yL~qs~~~~~ 391 (697)
||||||++|+|+.+|+|+||+|.+||||||||++|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999876 89999999875 46
Q ss_pred CCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhc
Q 005424 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALS 471 (697)
Q Consensus 392 ~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt 471 (697)
+++||+++|++++.||+.|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987667788899999999999999999999999999
Q ss_pred ceeeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHh
Q 005424 472 TRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (697)
Q Consensus 472 ~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcIN 551 (697)
++++.+++|.+.+++|++||.++||+|||+||++||+|||++||++|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34568999999999999999999999999
Q ss_pred HhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc
Q 005424 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF 629 (697)
Q Consensus 552 yaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f 629 (697)
||||||||+|++++|+.||++|++|||+|+.|+|. ||++|||||++||.|||+||| +|..++|+|..++.++...+.-
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 999999999999999999998 5889999999999997655542
Q ss_pred ce---eeeccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 630 GI---FIQADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 630 g~---~~~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
+- ...+....+.|+|+||||. |+|.|.+||+||+|.|.-+.+ ||.+|+++|+..|.
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf 538 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGT----------VDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELF 538 (693)
T ss_pred CCcccccCCCCCCCcEEEEeecee----------EeeccccHHHhccccccHHHHHHHHhCchHHHHHHh
Confidence 21 1334455778999999999 999999999999999998888 99999999987763
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.4e-150 Score=1298.30 Aligned_cols=514 Identities=47% Similarity=0.745 Sum_probs=484.3
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
|+|||+.|++|||++|||+|++||.+++||||+|++|||||||+++|+|++++++.|+++... |||||+||++||++|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999998765 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC-------CchhhhhhhchHHHhhccccccCCCCCCccccEEEE
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~-------~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L 321 (697)
.++++||||||||||||||||++|+||+||+.++++. .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999997642 799999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHH
Q 005424 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (697)
Q Consensus 322 ~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~ 401 (697)
+|+.+|+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||+|++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccce
Q 005424 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT 481 (697)
Q Consensus 402 ~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~ 481 (697)
.++.||+.|||+++|+..||+|||||||||||+|...++++.....+.+.++.||.||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766554344456778999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--CCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHh
Q 005424 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (697)
Q Consensus 482 i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~--~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq 559 (697)
+.+++|++||.++||||||+||+|||+|||++||++|.+.. .....+||||||||||+|+.||||||||||||||||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998752 3356799999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcc---cceeeec
Q 005424 560 HFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHA---FGIFIQA 635 (697)
Q Consensus 560 ~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~---fg~~~~~ 635 (697)
+||+|+|+.||++|++|||+|+.|+|.||++|||||++ |.|||+||| +|..|+|+|..++.++...+. ...+..+
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999998 599999998 688999999999999865553 3444455
Q ss_pred cCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 636 DLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 636 ~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
......|.|+|||+- |+|.|.+||+||+|.|.-+.+ ||..|+.+||-.|.
T Consensus 480 ~~~~~~F~I~HyAG~----------V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf 530 (691)
T cd01380 480 RFGQTSFTVKHFADD----------VEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVL 530 (691)
T ss_pred CCCCCeeEEEEccCC----------cccccccHHHhccccccHHHHHHHHhCccHHHHHHh
Confidence 666788999999999 999999999999999987777 89999999987653
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.3e-149 Score=1290.63 Aligned_cols=517 Identities=39% Similarity=0.634 Sum_probs=486.5
Q ss_pred cCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCC-CC--CCchhHHHHHHH
Q 005424 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS-IE--SPHVYAITDTAI 245 (697)
Q Consensus 169 ~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~-~~--~PHifavA~~Ay 245 (697)
.+++|||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|++++++.|+++. .. |||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999876 32 899999999999
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC----CCchhhhhhhchHHHhhccccccCCCCCCccccEEEE
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~----~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L 321 (697)
+.|+++++||||||||||||||||++|++|+||+.+++. ++++++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998753 3799999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHH
Q 005424 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (697)
Q Consensus 322 ~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~ 401 (697)
+|+.+|.|+||+|++||||||||++|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+++|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeC---CCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 005424 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID---NENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (697)
Q Consensus 402 ~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~---~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~ 478 (697)
.+++||+.|||+++++..||+|||||||||||+|...+ .++.+++.+.+.++.||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 99999999999999999999999999999999998753 345688899999999999999999999999999999999
Q ss_pred cceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC--CccceEEeeccCCCccCCC-CCHHHHHHhHhhH
Q 005424 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSISILDIYGFESFDR-NSFEQFCINYANE 555 (697)
Q Consensus 479 ~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~--~~~~~IgILDIfGFE~f~~-NsFEQLcINyaNE 555 (697)
||.++++++++||.++||+|||+||+|||+|||++||++|.+.+. ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986432 2457999999999999999 9999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc-ceee
Q 005424 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF-GIFI 633 (697)
Q Consensus 556 kLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f-g~~~ 633 (697)
|||++||+++|+.||++|++|||+|..|+|.||++|||||++||.|||+||| +|..|+|+|.+++.++...|.- ..+.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999998 6889999999999998666654 3344
Q ss_pred eccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 634 QADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 634 ~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
.+....+.|.|+||||. |+|.|.+||+||+|.|.-+.+ ||.+|++++|..|.
T Consensus 486 ~~~~~~~~F~I~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf 538 (692)
T cd01385 486 GPQVKEPAFIIQHYAGK----------VKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELI 538 (692)
T ss_pred CCCCCCCeEEEEEecce----------eeecCCCHHHhccccccHHHHHHHHhCccHHHHHHh
Confidence 55566789999999999 999999999999999998877 99999999988764
No 9
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=2.7e-149 Score=1285.90 Aligned_cols=514 Identities=45% Similarity=0.740 Sum_probs=484.6
Q ss_pred CCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCchhHHHHHHHH
Q 005424 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (697)
Q Consensus 170 ~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHifavA~~Ay~ 246 (697)
++||||+.|++|||++|||+|++||.+++||||+|++||+||||+++| +|++++++.|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 9999999999998765 8999999999999
Q ss_pred HHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC-----CchhhhhhhchHHHhhccccccCCCCCCccccEEEE
Q 005424 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (697)
Q Consensus 247 ~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~-----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L 321 (697)
+|.+.++||||||||||||||||++|++|+||+.++++. +|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997532 699999999999999999999999999999999999
Q ss_pred EecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHH
Q 005424 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (697)
Q Consensus 322 ~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~ 401 (697)
+|+.+|+|+||+|.+||||||||++|++||||||||||||+| ++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecC---hhHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 005424 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (697)
Q Consensus 402 ~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~---~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~ 478 (697)
++++||+.|||+++|+..||+||||||||||++|...++.+.+.+.+ .+.+++||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999998765444555543 588999999999999999999999999999
Q ss_pred cceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHH
Q 005424 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (697)
Q Consensus 479 ~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQ 558 (697)
+|.+.++++++||.++||||||+||++||+|||.+||++|.+.. ....+||||||||||+|+.||||||||||||||||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998653 34689999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcc-cceeeecc
Q 005424 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHA-FGIFIQAD 636 (697)
Q Consensus 559 q~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~-fg~~~~~~ 636 (697)
|+||+++|+.||++|++|||+|+.|+|.||++|||||+++|.|||+||| +|..|+|+|..++.++...++ ...+..+.
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999998 588999999999999865543 23444555
Q ss_pred CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 637 LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 637 ~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
..+..|.|+||||. |+|.|.+||+||+|.|.-+.+ ||.+|++++|..|.
T Consensus 479 ~~~~~F~I~HyAG~----------V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf 528 (674)
T cd01384 479 LSRTAFTIDHYAGD----------VTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLF 528 (674)
T ss_pred CCCCeeEEEEecce----------eeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHh
Confidence 66789999999999 999999999999999998888 99999999987663
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.8e-149 Score=1285.36 Aligned_cols=513 Identities=39% Similarity=0.658 Sum_probs=483.9
Q ss_pred CCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHH
Q 005424 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247 (697)
Q Consensus 170 ~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~ 247 (697)
++||||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++.++.|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999988765 89999999999999
Q ss_pred HHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC--CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecC
Q 005424 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 325 (697)
Q Consensus 248 m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~--~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~ 325 (697)
|+..++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 99999999999999999999999999999999987543 699999999999999999999999999999999999995
Q ss_pred CCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHH
Q 005424 326 TGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVE 405 (697)
Q Consensus 326 ~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~ 405 (697)
+|+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|+.|+.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCC--CCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEE
Q 005424 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (697)
Q Consensus 406 Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~--~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~ 483 (697)
||+.|||+++|+..||+||||||||||++|...+. .+.+++.+.+.++.||.||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987543 2457888999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhh
Q 005424 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (697)
Q Consensus 484 ~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~ 563 (697)
++++++||.++||||||+||+|||+|||++||++|.+. ....+||||||||||+|+.||||||||||||||||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864 3457999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc-ceeeeccCCCCc
Q 005424 564 HLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF-GIFIQADLTGNF 641 (697)
Q Consensus 564 ~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f-g~~~~~~~~~~~ 641 (697)
++|+.||+||++|||+|+.|+|.||++|||||++||.|||+||| +|..|+|+|..++.++...|.- ..+..+....+.
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 99999999999999999999999999999999999999999998 5888999999999997654432 333445555678
Q ss_pred eEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 642 FMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 642 F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
|+|+||||. |+|.|.+||+||+|.|.-+.+ ||.+|++++|+.|.
T Consensus 478 F~I~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf 522 (677)
T cd01387 478 FTIKHYAGK----------VTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLF 522 (677)
T ss_pred eEEEEeCce----------eeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHH
Confidence 999999999 999999999999999998888 99999999998763
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.6e-148 Score=1281.55 Aligned_cols=514 Identities=43% Similarity=0.669 Sum_probs=485.2
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
+||||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|++++++.|+++... |||||+||++||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999998765 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC----CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEec
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~ 324 (697)
+++++||||||||||||||||++|++|+||+.++++. .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998754 589999999999999999999999999999999999999
Q ss_pred CCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHH
Q 005424 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVV 404 (697)
Q Consensus 325 ~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~ 404 (697)
.+|+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeecc----c
Q 005424 405 EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN----D 480 (697)
Q Consensus 405 ~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~----e 480 (697)
+||+.|||+++|+..||+|||||||||||+|...++ +.+++.+.+.++.||.||||++++|.++|++|++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999986544 33788899999999999999999999999999999998 9
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhh
Q 005424 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (697)
Q Consensus 481 ~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~ 560 (697)
.+.+++|++||.++||||||+||+|||+|||.+||++|.+.......+||||||||||+|+.||||||||||||||||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975344568999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhc-CCcceeeecc-ccccc-Ccchhhhhhhhhhhcccce-eeecc
Q 005424 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-VPSPLTQLRV-FVLTT-KGVLLCYIFYLVVCHAFGI-FIQAD 636 (697)
Q Consensus 561 Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~-kp~GIlslL~-~~~~~-~~t~~~~~~~~~~~~~fg~-~~~~~ 636 (697)
||+|+|+.||++|++|||+|++|+|.||++|||||++ ||.|||+||| +|..+ +|+|..++.++...+.-.- +..+.
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999998 58889 9999999999755443211 22344
Q ss_pred CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 637 LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 637 ~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
...+.|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+.++|..|.
T Consensus 480 ~~~~~F~I~HyAG~----------V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf 529 (674)
T cd01378 480 SGSDEFRIKHYAGD----------VTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLF 529 (674)
T ss_pred CCCCcEEEEEecee----------eeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHh
Confidence 56789999999999 999999999999999987777 99999999987663
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.4e-146 Score=1268.36 Aligned_cols=515 Identities=37% Similarity=0.610 Sum_probs=475.6
Q ss_pred cCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCchhHHHHHHH
Q 005424 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (697)
Q Consensus 169 ~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHifavA~~Ay 245 (697)
.+++|||+.|++|||++||++|+.||.+++||||+|++||+||||+++| +|+++.++.|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998 9999999999998765 899999999999
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC-CCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEec
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~-~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~ 324 (697)
++|+++++||||||||||||||||++|++|+||+.++++ ..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 999999999999999999999999999999999998765 4899999999999999999999999999999999999999
Q ss_pred CCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCC-----------------
Q 005424 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS----------------- 387 (697)
Q Consensus 325 ~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~----------------- 387 (697)
.+|+|+||+|.+||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------ccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCC-Cce--eecChhHHHHH
Q 005424 388 ---------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE-NHV--EPVADEGLITV 455 (697)
Q Consensus 388 ---------~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~-~~~--~~~~~e~l~~a 455 (697)
|...+++||+++|+.|++||++|||+++|+..||+|||||||||||+|...+++ +.+ ...+.+.++.|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 223567899999999999999999999999999999999999999999875432 223 34467899999
Q ss_pred HHhhCCCHHHHHHhhcceeee-----eccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEE
Q 005424 456 AKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530 (697)
Q Consensus 456 A~LLGvd~~~L~~aLt~r~i~-----v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~Ig 530 (697)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||++||++|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7889999999999999999999999999999999999999998643 457999
Q ss_pred eeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cc
Q 005424 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FV 609 (697)
Q Consensus 531 ILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~ 609 (697)
||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|++|+|.||++|||||++||.|||+||| +|
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred cccCcchhhhhhhhhhhcccceee-ecc----------CCCCceEEEeeecccccccchhhhHHHHHHHHHHhcccccee
Q 005424 610 LTTKGVLLCYIFYLVVCHAFGIFI-QAD----------LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQI 678 (697)
Q Consensus 610 ~~~~~t~~~~~~~~~~~~~fg~~~-~~~----------~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (697)
..|+++|..++.++...+.-+-++ .+. ...+.|+|+||||. |+|.|.+||+||+|.|.-
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~----------V~Y~v~gfleKNkD~l~~ 550 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGA----------VCYETTQFVEKNNDALHM 550 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEeccee----------EeecCCChHHhcCccccH
Confidence 899999999999875444321111 111 12457999999999 999999999999999999
Q ss_pred eee-eccCCCCccccccc
Q 005424 679 IDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 679 ~~~-~~~~~~~~~~~~~~ 695 (697)
+.+ ||..|++++|..|.
T Consensus 551 ~~~~ll~~S~n~~i~~lf 568 (717)
T cd01382 551 SLESLICESKDKFLRSLF 568 (717)
T ss_pred HHHHHHHhCchHHHHHHh
Confidence 888 99999999997653
No 13
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=7.5e-146 Score=1253.70 Aligned_cols=510 Identities=35% Similarity=0.563 Sum_probs=476.2
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
.+|||+.|++|||++||++|+.||.+++||||+|++||+||||+++|+|++++++.|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999987655 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC--CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCC
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~--~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~ 326 (697)
.+.++||||||||||||||||++|++|+||+.++++. +++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999999987643 79999999999999999999999999999999999999999
Q ss_pred CCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHH-HhcCCCCcccCccccCCCccccCCcc----hHHHHH
Q 005424 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALR-EKLNLMSAKEYKYLRQSSCYSINGVD----DAEQFR 401 (697)
Q Consensus 327 G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r-~~l~L~~~~~y~yL~qs~~~~~~~~d----D~~~F~ 401 (697)
|+|+||+|++||||||||++|++||||||||||||+|++++++ ++|+|.++.+|+||++++|..+++++ |+++|+
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998876 78999999999999999877666654 578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCC---CCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeec
Q 005424 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (697)
Q Consensus 402 ~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~---~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~ 478 (697)
++++||++|||+++|+..||+|||||||||||+|...+. .+.+++.+.+.++.+|.||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 24577889999999999999999999999999999999
Q ss_pred cceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC----CccceEEeeccCCCccCCCCCHHHHHHhHhh
Q 005424 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYAN 554 (697)
Q Consensus 479 ~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~----~~~~~IgILDIfGFE~f~~NsFEQLcINyaN 554 (697)
||.++++++++||.++||||||+||+|||+|||.+||++|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987432 2357999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccceee
Q 005424 555 ERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFGIFI 633 (697)
Q Consensus 555 EkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg~~~ 633 (697)
|||||+|++++|+.||++|++|||+|..|+|.||++|||||++||.|||+||| +|..++|||.+++.++...++...+.
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~ 480 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKSKFFW 480 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998 58889999999999986666555555
Q ss_pred eccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccc
Q 005424 634 QADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVG 692 (697)
Q Consensus 634 ~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 692 (697)
.+....+.|+|+||||. |+|.|.+||+||+|.|.-+.+ ||.+| +.||
T Consensus 481 ~~~~~~~~F~I~HyAG~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S--~tv~ 528 (653)
T cd01379 481 RPKRVELSFGIHHYAGK----------VLYNASGFLEKNRDFLPADIVLLLRSS--QTVA 528 (653)
T ss_pred CCCCCCCceEEEEecee----------EeecCCCHHHhccccccHHHHHHHHhC--cHHH
Confidence 66666788999999999 999999999999999988877 88777 4454
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=7.7e-145 Score=1253.73 Aligned_cols=520 Identities=50% Similarity=0.786 Sum_probs=490.7
Q ss_pred CCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHH
Q 005424 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (697)
Q Consensus 165 np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~ 242 (697)
|||..++++||+.|++|||++||++|++||.+++||||+|++||+||||+++|+|++++++.|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998654 899999999
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC----CchhhhhhhchHHHhhccccccCCCCCCccccE
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKf 318 (697)
+||+.|+.+++||||||||||||||||++|++|+||+.++++. +|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 9999999999999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred EEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHH
Q 005424 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (697)
Q Consensus 319 i~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~ 398 (697)
++|+|+.+|+|+||+|.+||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++++|++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCc-eeecChhHHHHHHHhhCCCHHHHHHhhcceeeee
Q 005424 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (697)
Q Consensus 399 ~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~-~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v 477 (697)
+|+++++||+.|||+++|+..||+|||||||||||+|...++++. ..+.+.+.++.||.||||+.++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999997654432 3478889999999999999999999999999999
Q ss_pred ccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHH
Q 005424 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (697)
Q Consensus 478 ~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkL 557 (697)
++|.++++++++||.++||+|||+||+|||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4568999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc-ceeeec
Q 005424 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF-GIFIQA 635 (697)
Q Consensus 558 Qq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f-g~~~~~ 635 (697)
|++|++++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|| +|..++|+|..++.++...+.- ..+..+
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999998 5888999999999997655432 333333
Q ss_pred -cCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 636 -DLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 636 -~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
....+.|.|+||||. |.|.|.+||+||+|.|.-+.+ ||..|++++|..|.
T Consensus 480 ~~~~~~~F~I~H~AG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf 531 (677)
T smart00242 480 RKKGRTEFIIKHYAGD----------VTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLF 531 (677)
T ss_pred CCCCCCeEEEEeccee----------EeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHh
Confidence 355778999999999 999999999999999988777 99999999987663
No 15
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=6.2e-144 Score=1247.79 Aligned_cols=514 Identities=49% Similarity=0.763 Sum_probs=486.6
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
+++||+.|++|||++||++|+.||.+++||||+|++||+||||+++|+|+++.++.|+++... |||||+||++||++|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999988765 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC--CCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCC
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~--~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~ 326 (697)
+++++||||||||||||||||++|++|+||+.++++ ..++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 379999999999999999999999999999999999999999
Q ss_pred CCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHH
Q 005424 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEA 406 (697)
Q Consensus 327 G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~A 406 (697)
|+|+||+|.+||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++++|+++|++++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCC--ceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEe
Q 005424 407 LDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN--HVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQ 484 (697)
Q Consensus 407 l~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~--~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~ 484 (697)
|+.|||+++|+..||+|||||||||||+|...++++ .+.+.+.+.++.+|.||||+.++|.++|+++++.+++|.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 999999999999999999999999999999765544 378889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhh
Q 005424 485 NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRH 564 (697)
Q Consensus 485 ~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~ 564 (697)
+++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 335689999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccce--eeeccCCCCc
Q 005424 565 LFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFGI--FIQADLTGNF 641 (697)
Q Consensus 565 iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg~--~~~~~~~~~~ 641 (697)
+|+.||++|++|||+|+.|+|.||++|||||++||.|||+||| +|..++++|..++.++...+.-.. ...+....+.
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999998 688999999999999866555322 2334555779
Q ss_pred eEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 642 FMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 642 F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
|+|+||||. |.|.|.+|++||+|.|.-+.+ ||..|++++|-.|.
T Consensus 480 F~I~HyAG~----------V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf 524 (679)
T cd00124 480 FTIKHYAGD----------VTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELF 524 (679)
T ss_pred eEEEeecee----------EEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHh
Confidence 999999999 999999999999999988777 99999999887653
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=4.5e-141 Score=1229.66 Aligned_cols=511 Identities=28% Similarity=0.400 Sum_probs=456.1
Q ss_pred cCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHH
Q 005424 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (697)
Q Consensus 172 veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~ 249 (697)
||||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|++++++.|+++... |||||+||+.||++|.
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999998765 8999999999999999
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC---CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCC
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~---~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~ 326 (697)
.+++||||||||||||||||++|+||+||+.++++. ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 999999999999999999999999999999997653 23468999999999999999999999999999999999999
Q ss_pred CCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCC-ccccCCcchHHHHHHHHH
Q 005424 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS-CYSINGVDDAEQFRIVVE 405 (697)
Q Consensus 327 G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~-~~~~~~~dD~~~F~~l~~ 405 (697)
|+|+||+|++|||||||||+|++||||||||||||+|+++++|++|+|.+..++.++.... +...++++|+++|+.|++
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765543333322 233567899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccce----
Q 005424 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT---- 481 (697)
Q Consensus 406 Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~---- 481 (697)
||++|||+++|+..||+|||||||||||+|... .+.+++.+.+.++.||.||||+.++|.++|++++++++++.
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 34577888999999999999999999999999988776543
Q ss_pred ---------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCC------CCHH
Q 005424 482 ---------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR------NSFE 546 (697)
Q Consensus 482 ---------i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~------NsFE 546 (697)
+...++++||.++||||||+||+|||+|||++||++|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 33457889999999999999999999999999999998754 3457999999999999984 8999
Q ss_pred HHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCccccccc-CChHhHHHhhhcCC--------------cceeeecc-ccc
Q 005424 547 QFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKVP--------------SPLTQLRV-FVL 610 (697)
Q Consensus 547 QLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f-~DN~~~ldLie~kp--------------~GIlslL~-~~~ 610 (697)
|||||||||||||+||+++|+.||+||++|||+|+.+++ .||++|||||+++| .|||+||| +|.
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999997666 59999999999865 49999998 688
Q ss_pred ccCcchhhhhhhhhhhcccceeee-------ccCCCCceEEEeeec--ccccccchhhhHHHHHHHHHHhcccccee-ee
Q 005424 611 TTKGVLLCYIFYLVVCHAFGIFIQ-------ADLTGNFFMFCMVAS--ITTDTKISMNILSAKVLRFLLFNFRALQI-ID 680 (697)
Q Consensus 611 ~~~~t~~~~~~~~~~~~~fg~~~~-------~~~~~~~F~i~h~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 680 (697)
.|+|||..++.++...++-.-++. .......|+|+|||| . |.|.|.+||+||+|.+.. +.
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~----------V~Y~~~gfleKNkD~~~~~~~ 548 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNP----------VLYDVTGWLRRAKPNPAALNA 548 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCc----------eEecCCCHHHhcCCCCChHHH
Confidence 999999999999855443211111 112345799999999 6 899999999999998753 43
Q ss_pred e-eccCCCCccccccc
Q 005424 681 I-LMSGSRSKFVGVML 695 (697)
Q Consensus 681 ~-~~~~~~~~~~~~~~ 695 (697)
+ ||.+|+.++|..+.
T Consensus 549 ~~ll~~S~~~~i~~lF 564 (767)
T cd01386 549 PQLLQDSKREEINSLF 564 (767)
T ss_pred HHHHHhCCcHHHHHHH
Confidence 4 99999999988764
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=3.6e-141 Score=1228.94 Aligned_cols=513 Identities=48% Similarity=0.774 Sum_probs=455.9
Q ss_pred cCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHH
Q 005424 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (697)
Q Consensus 172 veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~ 249 (697)
||||+.|.+|||++||++|++||.+++||||+|++||+||||+++|+|+++.++.|+++... |||||++|++||++|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999997654 8999999999999999
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC------CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEe
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHF 323 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~------~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F 323 (697)
++++||||||||||||||||++|++|+||+.++.+. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 999999999999999999999999999999998654 58999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHH
Q 005424 324 SETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIV 403 (697)
Q Consensus 324 ~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l 403 (697)
+.+|.++||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++++..+++.+|.++|+.+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999989899999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEE
Q 005424 404 VEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (697)
Q Consensus 404 ~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~ 483 (697)
++||+.|||+++|+.+||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999988877788999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhh
Q 005424 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (697)
Q Consensus 484 ~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~ 563 (697)
++++++||.++||+|||+||++||+|||++||.+|++.......+||||||||||+|..|+||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986545678999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcCCccccccc-CChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc-ccceeeec-----
Q 005424 564 HLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH-AFGIFIQA----- 635 (697)
Q Consensus 564 ~iF~~EqeeY~~EGI~w~~i~f-~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~-~fg~~~~~----- 635 (697)
++|+.||++|++|||+|..++| .||++|||||+++|.|||+||| +|..++|+|..++.++...+ +-+..+..
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 8999999999999999999998 68899999999999986666 33333332
Q ss_pred cCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccccc
Q 005424 636 DLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVM 694 (697)
Q Consensus 636 ~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 694 (697)
....+.|.|+||||. |+|.|.+|+++|+|.+.-+.+ ||.+|+++||-.+
T Consensus 481 ~~~~~~F~I~HyaG~----------V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~l 530 (689)
T PF00063_consen 481 STSKSSFTIKHYAGD----------VTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSL 530 (689)
T ss_dssp SSTTSCEEEEETTEE----------EEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHH
T ss_pred ccCCCceEeecccCc----------ceeccccccccccchHHHHHHHHHHhCcCcccccc
Confidence 356889999999999 999999999999999998877 9999999998654
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.5e-138 Score=1139.65 Aligned_cols=514 Identities=39% Similarity=0.605 Sum_probs=469.2
Q ss_pred cCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHH
Q 005424 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (697)
Q Consensus 169 ~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~ 246 (697)
..||+|+.-|+.++|++++.||+.||+++.||||+|++||+||||+.++||+++.+++|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998754 8999999999999
Q ss_pred HHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC------CchhhhhhhchHHHhhccccccCCCCCCccccEEE
Q 005424 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (697)
Q Consensus 247 ~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~------~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~ 320 (697)
.|.+..+||||+|||||||||||++|+||+|+|++.+.+ .+.+.+|++||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999987643 46778999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCC-CCcccCccccCCCccccCCcchHHH
Q 005424 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (697)
Q Consensus 321 L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L-~~~~~y~yL~qs~~~~~~~~dD~~~ 399 (697)
|+||-+|..+|+.|..|||||||||.|.+||||||||||||.|+++++..+|+| .++..|.||+|+ +..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 689999999999 888999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeecc
Q 005424 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (697)
Q Consensus 400 F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~ 479 (697)
|+.+++||+++||+++|++++|+|+|||||||||+|...++ ..-+.+...++.+|+||++..++|.++||+|++.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999985433 3334455889999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC----CccceEEeeccCCCccCCCCCHHHHHHhHhhH
Q 005424 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (697)
Q Consensus 480 e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~----~~~~~IgILDIfGFE~f~~NsFEQLcINyaNE 555 (697)
|.+.+++|++||..+||||||++|+|||.|||.+||+.|.+... .....||+|||||||+|+.|||||||||||||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986421 22368999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeeccccc-cc-Ccchhhhhhhhhhhcc-ccee
Q 005424 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRVFVL-TT-KGVLLCYIFYLVVCHA-FGIF 632 (697)
Q Consensus 556 kLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~~~~-~~-~~t~~~~~~~~~~~~~-fg~~ 632 (697)
||||.|.+-+.+.|||||++|||+|++|+|.+|+-++||+|.+..|||+|||+.| .+ +-||..|+.++-...+ ++.+
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 9999999999999999999999999999999999999999999999999999644 33 3356667777633333 2332
Q ss_pred e-----ecc--CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 633 I-----QAD--LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 633 ~-----~~~--~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
. +.+ +.-.+|.|+||||- |-|+|+||+.||.|-|=-|-- ||=.|++|++-.|.
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~----------V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~f 544 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGD----------VTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLF 544 (1001)
T ss_pred hhhhccccccccCccceeEEEeccc----------eEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhC
Confidence 1 111 22579999999999 999999999999998865554 89999999887664
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.7e-137 Score=1135.41 Aligned_cols=512 Identities=41% Similarity=0.627 Sum_probs=477.1
Q ss_pred CccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHH
Q 005424 167 DILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTA 244 (697)
Q Consensus 167 ~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~A 244 (697)
-+-.+|+||+-|+-++|.+|..||+.||+.+.||||+|++||+||||+.+|+|++..+..|+|+.+- ||||||+|+++
T Consensus 15 ~k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnm 94 (1106)
T KOG0162|consen 15 KKHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNM 94 (1106)
T ss_pred ceeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999998864 89999999999
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC----CchhhhhhhchHHHhhccccccCCCCCCccccEEE
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~ 320 (697)
|++|...++|||||||||||||||+++|.||+|++.+++++ .|.+-||++||+|||||||||+||+||||||||++
T Consensus 95 Y~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E 174 (1106)
T KOG0162|consen 95 YRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE 174 (1106)
T ss_pred HHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence 99999999999999999999999999999999999998765 67888999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHH
Q 005424 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQF 400 (697)
Q Consensus 321 L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F 400 (697)
|+|+..|..+|++|..|||||+|||.|.++||||||||||++|++.+.|..|++..++.|.||+.++|+.++++||..+|
T Consensus 175 i~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdf 254 (1106)
T KOG0162|consen 175 IQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDF 254 (1106)
T ss_pred EEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeec--
Q 005424 401 RIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG-- 478 (697)
Q Consensus 401 ~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~-- 478 (697)
+.|+.||+++|+.++||+.||++||+|||||||.|.+ .++.+.+.+.+.++-.|+||||++..|.+.||.|.|...
T Consensus 255 q~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E--e~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G 332 (1106)
T KOG0162|consen 255 QETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE--EGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWG 332 (1106)
T ss_pred HHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe--eCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999997 345788899999999999999999999999999998753
Q ss_pred --cceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHH
Q 005424 479 --NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANER 556 (697)
Q Consensus 479 --~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEk 556 (697)
.|.+..+|+++||...||||||+||.|||+|||++||+++...+.....+||||||||||+|+.|+||||||||.|||
T Consensus 333 ~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEK 412 (1106)
T KOG0162|consen 333 GKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEK 412 (1106)
T ss_pred ccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999985544456899999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhc-CCcceeeeccccc-----ccCcchhhhhhhhhhhcccc
Q 005424 557 LQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-VPSPLTQLRVFVL-----TTKGVLLCYIFYLVVCHAFG 630 (697)
Q Consensus 557 LQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~-kp~GIlslL~~~~-----~~~~t~~~~~~~~~~~~~fg 630 (697)
|||.|.+-+.+.|||||.+|||.|++|+|.||.-++||||. +|.||+++||+.+ ...|.|..++.++...-.-+
T Consensus 413 LQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~ 492 (1106)
T KOG0162|consen 413 LQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSH 492 (1106)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999996 6899999998654 34667777888854222223
Q ss_pred eeeeccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccc
Q 005424 631 IFIQADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVG 692 (697)
Q Consensus 631 ~~~~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 692 (697)
-|+-+.+++ |.|+|||+- |.|.|-||-.+|+|-|++|-| ||-.|.-+|.-
T Consensus 493 phF~~~s~~--FvIkHYAGd----------VtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~ 543 (1106)
T KOG0162|consen 493 PHFESRSNG--FVIKHYAGD----------VTYDIDGFCDRNRDVLFKDLIELMQTSENPFLK 543 (1106)
T ss_pred CccccccCc--eEEEEeccc----------eeeecccccccchhHHHHHHHHHHhccchHHHH
Confidence 334444445 999999999 999999999999999999999 88888888764
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.8e-136 Score=1124.49 Aligned_cols=557 Identities=38% Similarity=0.604 Sum_probs=503.7
Q ss_pred cEEEEecCCCCEEEEEEEeeeCCeeEEEc-C-CCcEEEEecCCcccCCCCccCCcCCcccccCCCchhHHHHHHHHHhcC
Q 005424 120 LQSWFQLPNGNWELGKILSISGTESVISL-P-EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQD 197 (697)
Q Consensus 120 ~~vWv~~~~~~~~~~~v~s~~~~~v~v~~-~-~g~~~~v~~~~l~~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~ 197 (697)
-.||++|+.++|+.|.|+.......+++. + .|.+++-.-+++.++..+....|||-+.|-||||+.+|+|++.||.+|
T Consensus 5 r~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~ 84 (1259)
T KOG0163|consen 5 RLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKD 84 (1259)
T ss_pred ceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhccC
Confidence 38999999999999999999888888864 3 577888888999998777788899999999999999999999999999
Q ss_pred CcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHH
Q 005424 198 MIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 198 ~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i 274 (697)
.||||+.+|||+||||+.++ +|+++.+..|+|++.+ ||||||||+.|||.|..-+.+||||+||||||||||++|.+
T Consensus 85 kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~v 164 (1259)
T KOG0163|consen 85 KIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAV 164 (1259)
T ss_pred chhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHH
Confidence 99999999999999999998 9999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-CCCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCc
Q 005424 275 MQYLAALGG-GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERA 353 (697)
Q Consensus 275 l~yLa~~~~-~~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERN 353 (697)
++||+.-=| .+.|+++|+++||||||||||||+||+||||||||++|||+.+|.++|+-+.+|||||||||.|+.+|||
T Consensus 165 LrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERN 244 (1259)
T KOG0163|consen 165 LRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERN 244 (1259)
T ss_pred HHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccc
Confidence 999998643 4489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccc---------------------------cCCcchHHHHHHHHHH
Q 005424 354 YHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYS---------------------------INGVDDAEQFRIVVEA 406 (697)
Q Consensus 354 fHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~---------------------------~~~~dD~~~F~~l~~A 406 (697)
|||||||+||++++++++|.|..|++|+||+.| |.. .+-+||..+|..+..|
T Consensus 245 YHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~A 323 (1259)
T KOG0163|consen 245 YHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKA 323 (1259)
T ss_pred hhHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHH
Confidence 999999999999999999999999999999854 321 1236899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCC--CCceeec--ChhHHHHHHHhhCCCHHHHHHhhcceeeee-----
Q 005424 407 LDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPV--ADEGLITVAKLIGCDIGELKLALSTRKMRV----- 477 (697)
Q Consensus 407 l~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~--~~~~~~~--~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v----- 477 (697)
|+.+|++++|+..||+++|||||||||+|+...+ .+.|.+. +..+|..+|+|||++.++|...||.|.|.+
T Consensus 324 l~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~ 403 (1259)
T KOG0163|consen 324 LKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGF 403 (1259)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999997643 2345554 456799999999999999999999998864
Q ss_pred ccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHH
Q 005424 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (697)
Q Consensus 478 ~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkL 557 (697)
.|..|..|+.+.+|..+||||||++|++||+|||.+||+++...+ +..+||||||.|||-|.+|||||||||||||||
T Consensus 404 kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKL 481 (1259)
T KOG0163|consen 404 KGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKL 481 (1259)
T ss_pred cceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999998643 467999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccccee----
Q 005424 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFGIF---- 632 (697)
Q Consensus 558 Qq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg~~---- 632 (697)
|+|||+.|.+.|||.|++||+....|.|.||++||+|||.|..|||.||| +.+.|+-+...|-..++..++-+-.
T Consensus 482 Q~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~P 561 (1259)
T KOG0163|consen 482 QKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLP 561 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCC
Confidence 99999999999999999999999999999999999999999999999998 5788888888776664333321111
Q ss_pred -------e--eccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeee-eeccCCCCccc
Q 005424 633 -------I--QADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIID-ILMSGSRSKFV 691 (697)
Q Consensus 633 -------~--~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 691 (697)
| .+|--| |.|+||||- |-|.-+.|.+||-|||-+-- +|+--|++||+
T Consensus 562 RkSklksHR~lRDdEG--~liRHfAGa----------VCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll 618 (1259)
T KOG0163|consen 562 RKSKLKSHRELRDDEG--FLIRHFAGA----------VCYETEQFVEKNNDALHNSLEGLIEESDNPLL 618 (1259)
T ss_pred chhhhhhhhhhccccc--eeeeecccc----------eeechHHHHHhccHHHHHHHHHHHHhccchHH
Confidence 2 223335 999999999 99999999999999998743 36556666654
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.8e-125 Score=1082.15 Aligned_cols=514 Identities=52% Similarity=0.790 Sum_probs=483.8
Q ss_pred CCCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCchhHH
Q 005424 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAI 240 (697)
Q Consensus 164 ~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHifav 240 (697)
.||+. .+++||+.|+|||||+||+||+.||..+.||||+|.+|||||||+.+| +|+++.+..|+ .... .||+|||
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~fav 80 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAV 80 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhH
Confidence 46676 899999999999999999999999999999999999999999999999 99999999999 3333 7999999
Q ss_pred HHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC--C-CchhhhhhhchHHHhhccccccCCCCCCcccc
Q 005424 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--S-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGK 317 (697)
Q Consensus 241 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~--~-~ie~~Il~snpILEAFGNAKT~rNdNSSRFGK 317 (697)
|+.||+.|.....||+||||||||||||+++|.+|+||+.++++ . +||++|+++||||||||||||+||||||||||
T Consensus 81 A~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK 160 (862)
T KOG0160|consen 81 AEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGK 160 (862)
T ss_pred HHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhh
Confidence 99999999999999999999999999999999999999999987 4 89999999999999999999999999999999
Q ss_pred EEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchH
Q 005424 318 LIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDA 397 (697)
Q Consensus 318 fi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~ 397 (697)
|++|+|+..|+|.||+|+|||||||||+.++++|||||||||+|+|.+ +++++|.|..+..|.|++|++|..+++++|+
T Consensus 161 ~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~ 239 (862)
T KOG0160|consen 161 VIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDA 239 (862)
T ss_pred HHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeee
Q 005424 398 EQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (697)
Q Consensus 398 ~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v 477 (697)
++|..++.||..+|++.++|+.||++|||||||||++|...++++..++..+ .+..+|.|||++.+.|...|+.|.+.+
T Consensus 240 ~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~ 318 (862)
T KOG0160|consen 240 EEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILT 318 (862)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999997766544444443 899999999999999999999999999
Q ss_pred ccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHH
Q 005424 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (697)
Q Consensus 478 ~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkL 557 (697)
+++.+.++++..||...||+|||.||++||+|+|++||..|..+......+||||||||||.|+.|||||||||||||||
T Consensus 319 ~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkL 398 (862)
T KOG0160|consen 319 ARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKL 398 (862)
T ss_pred ccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999976655678999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeeccc-ccccCcchhhhhhhhhhhcc-cceeeec
Q 005424 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRVF-VLTTKGVLLCYIFYLVVCHA-FGIFIQA 635 (697)
Q Consensus 558 Qq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~~-~~~~~~t~~~~~~~~~~~~~-fg~~~~~ 635 (697)
||+||+|+|+.||+||.+|+|+|+.|+|.||++|+++|++ |.||++|||+ |..|.|++..+..++...-. .-.+-.|
T Consensus 399 qq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kp 477 (862)
T KOG0160|consen 399 QQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKP 477 (862)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCC
Confidence 9999999999999999999999999999999999999999 8999999994 77999999999999866444 4556777
Q ss_pred cCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccc
Q 005424 636 DLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVG 692 (697)
Q Consensus 636 ~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 692 (697)
...+..|+|+|||+- |.|.+++||++|+|.+--.-+ +++.|+-+|++
T Consensus 478 r~~~~~f~v~hyAg~----------v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~ 525 (862)
T KOG0160|consen 478 RLSRTDFRVAHYAGD----------VTYDTEGFLEKNRDYVSDELIDLLLASDCHFVA 525 (862)
T ss_pred CCCcCCcccccccCc----------cccchhhhccCCccccCHHHHhhhhhcccchHH
Confidence 788889999999999 999999999999999876666 77777766664
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.3e-106 Score=945.59 Aligned_cols=516 Identities=40% Similarity=0.619 Sum_probs=481.6
Q ss_pred cccCCCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCch
Q 005424 161 LVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHV 237 (697)
Q Consensus 161 l~~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHi 237 (697)
...+.++...+++||++|++++|+.+++||..||..+.||||+|++|++||||+++| +|.++.+..|.++..+ ||||
T Consensus 52 ~~~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phi 131 (1062)
T KOG4229|consen 52 IKALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHI 131 (1062)
T ss_pred hccccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcch
Confidence 345677788999999999999999999999999999999999999999999999999 9999999999977766 7999
Q ss_pred hHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC-CC-CCchhhhhhhchHHHhhccccccCCCCCCcc
Q 005424 238 YAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG-GG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRF 315 (697)
Q Consensus 238 favA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~-~~-~~ie~~Il~snpILEAFGNAKT~rNdNSSRF 315 (697)
|++|+.||++|++...||||+|||||||||||+|+++++||+.++ +. +.++++|+.++|+|||||||+|.+|||||||
T Consensus 132 fa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrf 211 (1062)
T KOG4229|consen 132 FAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRF 211 (1062)
T ss_pred hhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhh
Confidence 999999999999999999999999999999999999999999999 43 3899999999999999999999999999999
Q ss_pred ccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCcccc-CCc
Q 005424 316 GKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSI-NGV 394 (697)
Q Consensus 316 GKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~-~~~ 394 (697)
||||+++|..+|.+.||++..|||||+||+.|+.+||||||||++++|++.+++..+.|..+.+|+||+++.+..+ ++.
T Consensus 212 gk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~ 291 (1062)
T KOG4229|consen 212 GKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGE 291 (1062)
T ss_pred hheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeC--CCCceeecChhHHHHHHHhhCCCHHHHHHhhcc
Q 005424 395 DDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID--NENHVEPVADEGLITVAKLIGCDIGELKLALST 472 (697)
Q Consensus 395 dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~--~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~ 472 (697)
++.++|..+..||.++||+.+++.+|++++|||||+|||+|.+.. ..+.+++.+.+.++.+|.||.++.+.|.++++.
T Consensus 292 ~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~ 371 (1062)
T KOG4229|consen 292 DDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTA 371 (1062)
T ss_pred HHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcc
Confidence 999999999999999999999999999999999999999998643 335578889999999999999999999999999
Q ss_pred eeeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC-ccceEEeeccCCCccCCCCCHHHHHHh
Q 005424 473 RKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISILDIYGFESFDRNSFEQFCIN 551 (697)
Q Consensus 473 r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~-~~~~IgILDIfGFE~f~~NsFEQLcIN 551 (697)
++....+|.+..+++.++|.+.|||+||+||++||.|||.+||..+...+.. ...+||||||||||+|+.|+|||+|||
T Consensus 372 ~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in 451 (1062)
T KOG4229|consen 372 RVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCIN 451 (1062)
T ss_pred cceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864321 358999999999999999999999999
Q ss_pred HhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhccc-
Q 005424 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF- 629 (697)
Q Consensus 552 yaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f- 629 (697)
||||+||+|||+|+|.+||+||..|+|+|..|.|.||++|+|||..||+|||.+|| +...|++|+.+++.|+...|+.
T Consensus 452 ~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~ 531 (1062)
T KOG4229|consen 452 LANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSN 531 (1062)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998 6889999999999997666664
Q ss_pred ceeeeccCC-CCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCC
Q 005424 630 GIFIQADLT-GNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGS 686 (697)
Q Consensus 630 g~~~~~~~~-~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 686 (697)
....++... ..+|.|+|||+. +-|.+.+||++|+|-++-+.. ++=||
T Consensus 532 ~~y~~~k~~~e~~f~I~Hyagk----------v~y~~~~flekNrD~~~~d~~~~~~s~ 580 (1062)
T KOG4229|consen 532 NLYVFPKSRVETVFGITHYAGK----------VQYNIRGFLEKNRDTVRNDLVNLLRSS 580 (1062)
T ss_pred cccccccccccceeeeeeecce----------ehhhhhhHHHhhhhhhhhhHHhhcccc
Confidence 344444444 568999999999 999999999999999986655 44333
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.79 E-value=8e-09 Score=102.76 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC---CchhhhhhhchHHHhhc-cccccCCCCC
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFG-NAKTSRNDNS 312 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~---~ie~~Il~snpILEAFG-NAKT~rNdNS 312 (697)
||..+..++..|+ ++.|+||+..|++|||||+++.--. ...+ ..-+.+++.....+++. +|.|.+|++|
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~------~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR------EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC------CCCCcchHHHHHHHHHHhhccccccccccCCCCcc
Confidence 8888889999998 5689999999999999998854110 0000 11123666777888899 9999999999
Q ss_pred CccccEEEEEecCCCCcc
Q 005424 313 SRFGKLIEIHFSETGKIS 330 (697)
Q Consensus 313 SRFGKfi~L~F~~~G~i~ 330 (697)
||+..+++|++.......
T Consensus 81 SRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA 98 (186)
T ss_pred CcccEEEEEEEEEeecCC
Confidence 999999999998655444
No 24
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=98.30 E-value=1.9e-06 Score=66.28 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=38.0
Q ss_pred EEEEecCCCCEEEEEEEeeeCCeeEEEcCCCcEEEEecCC
Q 005424 121 QSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSEN 160 (697)
Q Consensus 121 ~vWv~~~~~~~~~~~v~s~~~~~v~v~~~~g~~~~v~~~~ 160 (697)
.|||||++++|+.|+|++..+++++|++.+|++++|+.++
T Consensus 3 ~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp EEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred EEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 8999999999999999999999999999999999998764
No 25
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.56 E-value=0.0095 Score=67.23 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=46.0
Q ss_pred ecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHH-HHHHHHHH
Q 005424 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLA 279 (697)
Q Consensus 210 VNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t-K~il~yLa 279 (697)
+|||...| |++.+-..++.+..-|-|-| -+.-|..-..||+|+++||.|||||+-. ..++.|-.
T Consensus 24 ~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~ 88 (699)
T KOG0925|consen 24 INPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL 88 (699)
T ss_pred cCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH
Confidence 99999998 77777777776665554433 3445555678999999999999999865 33344433
No 26
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.37 E-value=0.013 Score=53.12 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998876
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.95 E-value=0.02 Score=52.42 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=20.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 45789999999999999999999887754
No 28
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.90 E-value=0.038 Score=49.82 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.1
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.......+++|.|++|+|||..++.+.+.+.
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3344568999999999999999999988875
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.73 E-value=0.023 Score=54.78 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=22.1
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...+..++++|.|++|+|||...+.+++.+..
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45667899999999999999999999998875
No 30
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.27 E-value=0.035 Score=50.18 Aligned_cols=22 Identities=50% Similarity=0.519 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 31
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.96 E-value=0.045 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.|+|+|.||||||+.++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999887764
No 32
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.76 E-value=0.045 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.++|.|.+|+|||+.++.+.+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 578999999999999999999887654
No 33
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.52 E-value=0.057 Score=49.04 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=21.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa 279 (697)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 34
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.38 E-value=0.078 Score=44.49 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 35
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.30 E-value=0.081 Score=53.24 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
++..-|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998875
No 36
>PRK06696 uridine kinase; Validated
Probab=93.11 E-value=0.13 Score=52.52 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 240 vA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+|+..+.. .....--|.|+|.||||||+.++.+.+.|..
T Consensus 10 la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 10 LAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444331 2456778999999999999999999988854
No 37
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.04 E-value=0.071 Score=53.13 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999998865
No 38
>PF12846 AAA_10: AAA-like domain
Probab=93.01 E-value=0.088 Score=54.52 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
|..++|.|.+|||||+.++.++..+...+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 567999999999999999999998887653
No 39
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.93 E-value=0.089 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.|+|+|+||||||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999877764
No 40
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.80 E-value=0.087 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=22.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888754
No 41
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.79 E-value=0.082 Score=52.78 Aligned_cols=26 Identities=50% Similarity=0.546 Sum_probs=23.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|-|+|.||||||+.++.+.+.|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 67999999999999999999997544
No 42
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.78 E-value=0.18 Score=50.82 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.+.+........|+|.|++|+|||..++.+.+++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444567889999999999999999999988764
No 43
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.77 E-value=0.11 Score=52.36 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+...|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456788899999999999999887765
No 44
>PRK08233 hypothetical protein; Provisional
Probab=92.72 E-value=0.078 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
.-|.|+|.||||||+.++.+.+.|
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 568899999999999999988765
No 45
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.61 E-value=0.096 Score=52.16 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987765
No 46
>PRK06762 hypothetical protein; Provisional
Probab=92.58 E-value=0.12 Score=49.87 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 47
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.57 E-value=0.15 Score=50.25 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=25.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999997754
No 48
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.50 E-value=0.11 Score=48.42 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|+|.+|||||+.++.+.+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 49
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.47 E-value=0.096 Score=50.22 Aligned_cols=23 Identities=52% Similarity=0.660 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 50
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.44 E-value=0.12 Score=49.52 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.+.|+++|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 51
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.44 E-value=0.11 Score=48.03 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999998875
No 52
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.43 E-value=0.21 Score=47.95 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|+++|+.|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998876
No 53
>PF05729 NACHT: NACHT domain
Probab=92.41 E-value=0.12 Score=48.50 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 479999999999999999999887643
No 54
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.39 E-value=0.16 Score=55.48 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=27.5
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.+.+.+. .|||+|..|||||+..+.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554 5999999999999999999998754
No 55
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.34 E-value=0.16 Score=53.68 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=26.7
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++.+.... .-.|+|+|++|||||++.+.+++++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34454332 346999999999999999999988743
No 56
>PRK07261 topology modulation protein; Provisional
Probab=92.27 E-value=0.11 Score=51.08 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+-|+|.|.||||||+.++.+.+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358999999999999999886543
No 57
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.26 E-value=0.11 Score=50.75 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+....|+++|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988864
No 58
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.1 Score=56.66 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.+.+=|-||||||||++++-||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4568889999999999999999999874
No 59
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.89 E-value=0.3 Score=50.18 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=28.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
.....-|.|+|.||||||+.++.+.+.|...++
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 467789999999999999999999998876554
No 60
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.88 E-value=0.14 Score=50.93 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|.|+|.||||||+.++.+.+.|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988753
No 61
>PRK08118 topology modulation protein; Reviewed
Probab=91.83 E-value=0.14 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
|-|+|.|.+|||||+.+|.+-+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998765
No 62
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.75 E-value=0.18 Score=52.21 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999877653
No 63
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.69 E-value=0.13 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...|+|+|++|||||+..+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56899999999999999999888763
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.66 E-value=0.33 Score=51.38 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.5
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...+...+.+....++++|+.|+|||+.++.+.+.+.
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445555555445689999999999999999988774
No 65
>PTZ00301 uridine kinase; Provisional
Probab=91.56 E-value=0.15 Score=52.29 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa 279 (697)
|-|+|-||||||+.++.+.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999999987664
No 66
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.48 E-value=0.21 Score=48.67 Aligned_cols=28 Identities=36% Similarity=0.337 Sum_probs=23.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
+++|+|++|+|||..+-.++...+..+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~ 28 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGE 28 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 4799999999999999888888775443
No 67
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.43 E-value=0.15 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|+|||.||+|||+.+|.+++-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999987643
No 68
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.42 E-value=0.24 Score=53.41 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...|+|+|..|||||+..+.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999999998865
No 69
>PRK06547 hypothetical protein; Provisional
Probab=91.41 E-value=0.31 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.3
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5667889999999999999999987754
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.41 E-value=0.22 Score=54.09 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=29.8
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++.......+++++|+|++|+|||..++.+++.|..
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333344667889999999999999999999998864
No 71
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.40 E-value=0.16 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|-|+|.||||||+.++.+...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999887753
No 72
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.34 E-value=0.18 Score=49.44 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999887653
No 73
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.33 E-value=0.17 Score=50.06 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=36.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCCCCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeee
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQT 336 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~~~~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~t 336 (697)
|+|+|+.|+|||+..+.++++|...+- +.|=|+.-..-..|.-.|-.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~------------------------------~v~Gf~t~evr~~g~r~GF~iv~ 51 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGL------------------------------PVGGFYTEEVRENGRRIGFDIVD 51 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCG------------------------------GEEEEEEEEEETTSSEEEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCC------------------------------ccceEEeecccCCCceEEEEEEE
Confidence 899999999999999999999864221 23445555544677777777766
Q ss_pred e
Q 005424 337 F 337 (697)
Q Consensus 337 Y 337 (697)
.
T Consensus 52 l 52 (168)
T PF03266_consen 52 L 52 (168)
T ss_dssp T
T ss_pred C
Confidence 5
No 74
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.28 E-value=0.2 Score=49.77 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
++++.|.||.|||+.+|.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999886
No 75
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.27 E-value=0.21 Score=46.47 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 257 IIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
++|+|++|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999988763
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.25 E-value=0.35 Score=50.05 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 241 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555556679999999999999999988877664
No 77
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.23 E-value=0.18 Score=45.78 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|.|.|++|.|||..++.+++.|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999988764
No 78
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.15 E-value=0.27 Score=47.95 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....|+|.|.+|||||+.++.+.+.|..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999864
No 79
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.02 E-value=0.15 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.|+|+|.||||||+..+.+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 367999999999999999988543
No 80
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.88 E-value=0.52 Score=53.58 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
++...-.|...++.-.+.|.+.|.|.||+|||+..+.|+.+
T Consensus 138 ~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 138 PLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 34444566677766678999999999999999998877653
No 81
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.78 E-value=0.15 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|++.|.+|||||+.++.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999988776
No 82
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.63 E-value=0.19 Score=55.01 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=26.6
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.. .....|+|+|++|||||++.+.+++++.
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344443 2357899999999999999999998864
No 83
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.58 E-value=0.23 Score=47.80 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|+|+|.+|||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 84
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.48 E-value=0.16 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998854
No 85
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.41 E-value=0.2 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.--|+|+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999997753
No 86
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.40 E-value=0.18 Score=47.87 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999988865
No 87
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.39 E-value=0.41 Score=47.97 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=27.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+...|.|+|.||||||+.++.+.+.|...+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999886543
No 88
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=90.35 E-value=0.079 Score=57.16 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=39.2
Q ss_pred cCCCCCCCCCcccc-----CCCCCcccCCccccccccccccccccCcEEEEecCCC
Q 005424 79 EDRPSVGDEDLDSA-----ASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNG 129 (697)
Q Consensus 79 ~~~~~~~~~~~~~~-----~~p~~~l~~~~~e~~~~q~~~~~~k~~~~vWv~~~~~ 129 (697)
+.+||++|.||+++ .+|||+.+|| ..|+.+.++|+++| .|..|++
T Consensus 224 EG~PPYsDIHPMRAIFMIPT~PPPTF~KP---E~WS~~F~DFi~~C---LiK~PE~ 273 (502)
T KOG0574|consen 224 EGRPPYSDIHPMRAIFMIPTKPPPTFKKP---EEWSSEFNDFIRSC---LIKKPEE 273 (502)
T ss_pred cCCCCcccccccceeEeccCCCCCCCCCh---HhhhhHHHHHHHHH---hcCCHHH
Confidence 56899999999998 8999999997 68999999999974 6666665
No 89
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.33 E-value=0.39 Score=53.00 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=38.0
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++|+-+... .+|+-.. .+++.. .+-+++++++|+.|+|||+.++.+.+.|-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4566655433 4665543 344444 456899999999999999999999998853
No 90
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.20 E-value=0.24 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
....-|+|+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999988877653
No 91
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=90.17 E-value=0.21 Score=53.57 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.7
Q ss_pred eEEEEeCCCCCChhHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~i 274 (697)
|-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999997766
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.15 E-value=0.34 Score=53.28 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=29.3
Q ss_pred HHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 247 ~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.......+++++|+|.+|+|||..++.+++.+...
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33445677899999999999999999999988654
No 93
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.11 E-value=0.42 Score=51.10 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.1
Q ss_pred HHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 247 ~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+...+....++++|++|+|||+.++.+.+++..
T Consensus 29 ~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 29 RAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344454457999999999999999999998763
No 94
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.11 E-value=0.19 Score=46.68 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+++|.+|||||+.++.+.+.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7999999999999999987654
No 95
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.11 E-value=0.2 Score=52.40 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....|+|+|+.|||||+..+.+++++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 5689999999999999999999988754
No 96
>PRK06217 hypothetical protein; Validated
Probab=90.03 E-value=0.23 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999987755
No 97
>PF13245 AAA_19: Part of AAA domain
Probab=90.01 E-value=0.42 Score=41.28 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+...+|.|..|+|||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999888888888875
No 98
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.94 E-value=0.23 Score=50.15 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887653
No 99
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.89 E-value=0.25 Score=46.46 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
+|++.|.+|||||+.+|.+-+.|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.83 E-value=0.65 Score=47.26 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..+..++|.|++|+|||..++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999998876543
No 101
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.73 E-value=0.66 Score=50.07 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.1
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+.+.-|-|+|.||||||+.++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3456778899999999999999887766543
No 102
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.73 E-value=0.26 Score=54.57 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...-|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999865
No 103
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=89.72 E-value=0.3 Score=48.84 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=23.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
-|.|+|.||||||+..+.+++.|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 67899999999999999999998753
No 104
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.61 E-value=0.38 Score=52.78 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...|+|+|+.|||||+..+.+++++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999988763
No 105
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=89.60 E-value=0.3 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|.|.+|||||+.++.+.+.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998775
No 106
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.48 E-value=0.34 Score=46.56 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998654
No 107
>PRK04182 cytidylate kinase; Provisional
Probab=89.40 E-value=0.28 Score=47.34 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|.+|||||+.++.+.+-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997654
No 108
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.18 E-value=0.3 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 447999999999999999999999875
No 109
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.07 E-value=0.3 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~y 277 (697)
|+++|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999988664
No 110
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.92 E-value=0.27 Score=52.16 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=16.8
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999997765
No 111
>PRK07667 uridine kinase; Provisional
Probab=88.81 E-value=0.41 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999888864
No 112
>PRK12377 putative replication protein; Provisional
Probab=88.77 E-value=0.72 Score=48.61 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
-|+++.|..-.+.... ..++++|+|.+|+|||..+..|.++|..-+
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3566655554444332 357999999999999999999999998543
No 113
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.59 E-value=0.37 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
++.|+|.|.+|||||+.++.+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987764
No 114
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.57 E-value=0.49 Score=45.97 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|+++|+.|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999887653
No 115
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.56 E-value=0.38 Score=48.17 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|.||||||+-+|.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998873
No 116
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.45 E-value=0.26 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...|+|+|.+|||||+..+.+++++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46799999999999999999988763
No 117
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.44 E-value=0.37 Score=49.92 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=20.9
Q ss_pred eeEEE--EeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSII--ISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIi--iSGESGAGKTe~tK~il~yLa 279 (697)
.++|| |+|-||||||+-+|.+.+-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44444 689999999999999987664
No 118
>PRK14527 adenylate kinase; Provisional
Probab=88.44 E-value=0.39 Score=47.76 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.|++.|.+|||||+.++.+.+.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999987765
No 119
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.36 E-value=0.71 Score=46.73 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 239 avA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+|.......| ...+...|-++|-||||||+.+..+-+-|-..|
T Consensus 9 ~v~~~~r~~~-~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREAL-KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHH-hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 4444443333 345578999999999999999999988887765
No 120
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=88.34 E-value=0.2 Score=60.36 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=35.2
Q ss_pred cCCCCCCCCCcccc-----CCCCCcccCCccccccccccccccccCc
Q 005424 79 EDRPSVGDEDLDSA-----ASPLPSVSASHTDRRWSDTTSYAGKKKL 120 (697)
Q Consensus 79 ~~~~~~~~~~~~~~-----~~p~~~l~~~~~e~~~~q~~~~~~k~~~ 120 (697)
+-.||++|+||+++ |||||.|++| ..|+|..+.||.+|+
T Consensus 223 dG~PPl~DmHPmraLF~IpRNPPPkLkrp---~kWs~~FndFIs~cL 266 (953)
T KOG0587|consen 223 EGAPPLCDMHPMRALFLIPRNPPPKLKRP---KKWSKKFNDFISTCL 266 (953)
T ss_pred CCCCCccCcchhhhhccCCCCCCccccch---hhHHHHHHHHHHHHH
Confidence 44599999999998 9999999997 779999999999865
No 121
>PHA00729 NTP-binding motif containing protein
Probab=88.19 E-value=0.79 Score=47.80 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 241 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
|...-+.+. ...-..|+|+|.+|+|||+.++.+.+.+.
T Consensus 5 ~k~~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344334443 33447899999999999999999988764
No 122
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=88.18 E-value=0.41 Score=47.90 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...|+|+|+||+||||++-.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 123
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.15 E-value=0.38 Score=48.74 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999998888654
No 124
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.13 E-value=0.4 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|++.|++|.|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999888877
No 125
>PRK04040 adenylate kinase; Provisional
Probab=88.08 E-value=0.46 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.-|+|+|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999988873
No 126
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=88.01 E-value=0.44 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988653
No 127
>PRK13764 ATPase; Provisional
Probab=88.00 E-value=0.54 Score=55.49 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...|+|+|.+|||||+.++.+++++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 128
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=87.93 E-value=0.42 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..|.+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999888754
No 129
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.89 E-value=0.28 Score=56.32 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.|.+.|.|+||||||+..|.++.++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999988653
No 130
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=87.87 E-value=0.41 Score=48.06 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.++..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999888654
No 131
>PRK06893 DNA replication initiation factor; Validated
Probab=87.85 E-value=0.94 Score=46.67 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+|.. .+..+.+.+ ....+.++++.|.||+|||..+..+.+.++..+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3443 333333333 345667899999999999999999988876543
No 132
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=87.79 E-value=0.44 Score=48.42 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999988765
No 133
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.77 E-value=0.36 Score=44.71 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|++|||||+..+.+...+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999988775443
No 134
>PRK08727 hypothetical protein; Validated
Probab=87.76 E-value=0.91 Score=46.95 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....+.|+|+|.||+|||..+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 44567899999999999999999888776543
No 135
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.74 E-value=0.52 Score=54.26 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=26.1
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.++.+... ..--|+|+|++|||||++.+.+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34445433 234689999999999999998888764
No 136
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.69 E-value=0.45 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 137
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=87.69 E-value=0.43 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 138
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.66 E-value=0.45 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|.|.+|||||+.++.+.+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998866
No 139
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=87.62 E-value=0.67 Score=39.14 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|+++|..|+|||+.+..+.+.|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 68899999999999999999998743
No 140
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=87.52 E-value=0.47 Score=47.56 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999988886543
No 141
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.46 E-value=0.39 Score=51.14 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
++..++-+-||||+|||+..|.+++-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45678889999999999999999986654333
No 142
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=87.45 E-value=0.5 Score=44.78 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+....|+++|+=|||||+-+|-+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999998877
No 143
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=87.43 E-value=0.46 Score=47.88 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999999999988886543
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=0.64 Score=50.95 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHHHhc------CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRD------EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~------~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-|++.-|..|..--..+ .-|--|++.|..|.|||..||.+-|.|+-
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 45666666554322211 24678999999999999999999999853
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=87.33 E-value=0.45 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.|.|+||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999987654
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.32 E-value=0.47 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999998888654
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.30 E-value=0.67 Score=49.41 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred HHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 245 IREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 245 y~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.... .+-+..++++|++|+|||+.++.+.+.+
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 333333 3346777889999999999999998765
No 148
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=87.27 E-value=0.48 Score=47.26 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999998888653
No 149
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.20 E-value=0.46 Score=47.08 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=27.0
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....+.....++|+|.|..|+|||..++.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3444555668999999999999999999998877
No 150
>PRK14531 adenylate kinase; Provisional
Probab=87.17 E-value=0.57 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
|-|+|.|-+|||||+.++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998775
No 151
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=87.10 E-value=0.49 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999987654
No 152
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.08 E-value=0.49 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988886544
No 153
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=87.06 E-value=0.41 Score=55.64 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.|.+.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999988764
No 154
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.04 E-value=0.59 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999887754
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.01 E-value=0.5 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 156
>PRK00698 tmk thymidylate kinase; Validated
Probab=87.00 E-value=0.74 Score=45.54 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+-.|+|.|-+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988543
No 157
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.97 E-value=1.3 Score=44.18 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=42.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCCCCCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceee
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~~~~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I 334 (697)
-.|.|||..|+|||+.++.+...|...+- +-|-|+.-.....|+-.|-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~------------------------------kvgGf~t~EVR~gGkR~GF~I 55 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY------------------------------KVGGFITPEVREGGKRIGFKI 55 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc------------------------------eeeeEEeeeeecCCeEeeeEE
Confidence 46999999999999999999998875431 345577667777888888888
Q ss_pred eeee
Q 005424 335 QTFL 338 (697)
Q Consensus 335 ~tYL 338 (697)
.+..
T Consensus 56 vdl~ 59 (179)
T COG1618 56 VDLA 59 (179)
T ss_pred EEcc
Confidence 7653
No 158
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=86.96 E-value=0.65 Score=45.29 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|.|.|.+|||||+.+..+++.|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999987643
No 159
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.93 E-value=0.53 Score=46.24 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886543
No 160
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.92 E-value=0.43 Score=50.81 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=24.5
Q ss_pred eEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhh
Q 005424 528 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (697)
Q Consensus 528 ~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~ 563 (697)
-|.|+| +=|+-+..+=+.++.|=|||-...||-.
T Consensus 205 ri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 205 RIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred eEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 466666 3355556666889999999988888754
No 161
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=86.91 E-value=0.5 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...|+|+|.+|||||+..+.+++++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 468999999999999999999987653
No 162
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.85 E-value=0.75 Score=51.60 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+... ....+.+...+...+++|+|++|.|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 454433 3556777777778899999999999999999987754
No 163
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=86.82 E-value=0.53 Score=46.47 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
.-|||+|.||+|||+.++.+++-+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999988754
No 164
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=86.81 E-value=0.54 Score=47.41 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998877543
No 165
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=86.72 E-value=0.55 Score=50.70 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
-+-|+|+|+||+||||++--+++-=
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhc
Confidence 4679999999999999987777643
No 166
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=86.71 E-value=0.87 Score=53.02 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.5
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....+|.|+|+||+|+|||..++.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456689999999999999999999987653
No 167
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=86.71 E-value=0.52 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.|+++|.+|||||+.++.+.+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 3679999999999999999987765
No 168
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=86.64 E-value=0.51 Score=51.45 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 456899999999999999999987754
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.60 E-value=0.66 Score=48.60 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....+++.|++|+|||+.++.+-+.|...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999886543
No 170
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.58 E-value=0.69 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+...|+|.|.+|+|||+++..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998753
No 171
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=86.52 E-value=0.51 Score=47.46 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999998887543
No 172
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.50 E-value=0.42 Score=51.60 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|+|.+|||||+..+.++.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34799999999999999999988775
No 173
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.49 E-value=0.85 Score=52.67 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=38.5
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..+|+-+... .+|+-..-.+|+ ..++-+|++|++|..|.|||++++.+-+.|-+.
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3456554433 466654433332 245668999999999999999999999887654
No 174
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=86.40 E-value=0.58 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998888653
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.39 E-value=0.9 Score=44.90 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.9
Q ss_pred HHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 246 REMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 246 ~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+++.. .+-++++|+.|+.|.|||+.++.+.+.+..
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34443 456799999999999999999999988865
No 176
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=86.38 E-value=0.49 Score=51.62 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.||||||||+..|.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 457899999999999999999987654
No 177
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=86.37 E-value=0.7 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4569999999999999999888855
No 178
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.33 E-value=0.73 Score=51.45 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 239 avA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++.++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 466778888887788999999999999999999999887754
No 179
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=86.30 E-value=0.74 Score=44.82 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|+|.|-.|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999864
No 180
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=86.29 E-value=0.84 Score=44.88 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+.|.|+|.||||||+.++.+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999887643
No 181
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=86.26 E-value=0.54 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999987654
No 182
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.26 E-value=0.61 Score=47.01 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.. +.+.|.|++|||||+..|.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999988886543
No 183
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.21 E-value=0.6 Score=47.27 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..|.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988854
No 184
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=86.21 E-value=1 Score=44.38 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..-.|+++|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999988753
No 185
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=86.16 E-value=0.58 Score=47.94 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887654
No 186
>PRK03839 putative kinase; Provisional
Probab=86.16 E-value=0.64 Score=45.56 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 187
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.16 E-value=1.5 Score=46.80 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHh---------cCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 237 VYAITDTAIREMIR---------DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 237 ifavA~~Ay~~m~~---------~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+..+..++++.++. .++.+.|++.|.+|+|||+++..+..+++..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45555555555432 23468999999999999999999988887543
No 188
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=86.16 E-value=0.6 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888854
No 189
>PRK14528 adenylate kinase; Provisional
Probab=86.14 E-value=0.69 Score=46.14 Aligned_cols=24 Identities=46% Similarity=0.632 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997765
No 190
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.13 E-value=0.59 Score=47.79 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999998886544
No 191
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=86.13 E-value=0.6 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998888643
No 192
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.11 E-value=1.2 Score=45.68 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCc--eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 241 TDTAIREMIRDEV--NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 241 A~~Ay~~m~~~~~--nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
|-.|-+.+..... -+.++|.|++|+|||...+.+..++...
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444455554432 3579999999999999988888777654
No 193
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.08 E-value=0.62 Score=46.74 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888653
No 194
>PLN03025 replication factor C subunit; Provisional
Probab=86.04 E-value=1.1 Score=48.36 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.6
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.+...+.-.+++++|.+|+|||+.++.+.+.+.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666667899999999999999999988874
No 195
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=85.98 E-value=0.58 Score=47.75 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999998888643
No 196
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.90 E-value=0.98 Score=52.38 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=37.6
Q ss_pred HhhccCCCC----CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 225 EAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 225 ~~Y~~~~~~----~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
++|+-+... .+|+...-.+| +..++-.|++|++|+.|.|||++++.+.+.|-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 445544332 35655433332 3345668999999999999999999999988653
No 197
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=85.89 E-value=0.63 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998888654
No 198
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.88 E-value=0.65 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999988877654
No 199
>PRK08116 hypothetical protein; Validated
Probab=85.84 E-value=1.4 Score=46.84 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 235 PHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+.++.|..--...... ..+..+++.|.+|+|||..+..+.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34555665544443322 345679999999999999999999998764
No 200
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=85.83 E-value=0.63 Score=47.83 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887543
No 201
>PRK08356 hypothetical protein; Provisional
Probab=85.81 E-value=0.56 Score=46.88 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
--|+|+|.+|||||+.++.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998884
No 202
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.81 E-value=0.89 Score=49.58 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+..+.|.+.|.+|+|||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999987644
No 203
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.80 E-value=0.89 Score=52.34 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=37.3
Q ss_pred HhhccCCCC----CCchhHHHHHHHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 225 EAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 225 ~~Y~~~~~~----~PHifavA~~Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++|+-+... ..|+.+. .+.+... +-.+++|++|+.|.|||+.++.+.+.|-+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 556544433 4676653 4444444 44788999999999999999999998865
No 204
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.75 E-value=0.94 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
..+|+|++|||||+..-.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998865543
No 205
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=85.74 E-value=0.79 Score=47.82 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 240 ITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 240 vA~~Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+.+++|..|... ..+.+-.+.|++|+||||++|.+-+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 467888877543 56788999999999999999988776553
No 206
>PRK15453 phosphoribulokinase; Provisional
Probab=85.74 E-value=0.73 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.=-|.|+|-||||||+.++.+.+-|.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999988866543
No 207
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=85.73 E-value=0.63 Score=46.59 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998888543
No 208
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=85.73 E-value=0.64 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+..+.+.|.|+||||||+..+.++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 567899999999999999974443
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=85.72 E-value=0.65 Score=46.74 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
++.+.+.|.|++|||||+..+.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 210
>PRK10908 cell division protein FtsE; Provisional
Probab=85.71 E-value=0.65 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998887643
No 211
>PRK06761 hypothetical protein; Provisional
Probab=85.70 E-value=0.59 Score=50.26 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.-|+|+|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998864
No 212
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.70 E-value=0.66 Score=46.30 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa 279 (697)
|.|||.+|||||+-++.+-++|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 78999999999999999988875
No 213
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.69 E-value=0.88 Score=53.76 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.1
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..+-.|++|++|.+|.|||++++.+.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45568999999999999999999999988653
No 214
>PF13479 AAA_24: AAA domain
Probab=85.69 E-value=0.55 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~i 274 (697)
+++..|+|.|+||+|||+.++.+
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC
Confidence 35789999999999999876554
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=85.68 E-value=1.5 Score=48.29 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=26.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+++..|+++|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999999999999999887643
No 216
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=85.68 E-value=0.61 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCChhHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~i 274 (697)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 217
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=85.66 E-value=0.63 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998888654
No 218
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=85.60 E-value=0.68 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999865
No 219
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=85.58 E-value=0.68 Score=46.49 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887543
No 220
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=85.58 E-value=0.68 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998887654
No 221
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.56 E-value=0.91 Score=42.25 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=23.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|+++|.+|+|||..+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 222
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=85.55 E-value=0.65 Score=47.92 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999988876443
No 223
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=85.51 E-value=0.66 Score=47.54 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887654
No 224
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=85.49 E-value=0.62 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++|.|.||||||...+.++.-|+.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHH
Confidence 6999999999999999999888876
No 225
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=85.45 E-value=0.62 Score=50.73 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+-|.||||||||+..|.++..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999998755
No 226
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=85.42 E-value=0.49 Score=54.94 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=26.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+.+.+=|-||||||||+++..+|.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 346788899999999999999999998754
No 227
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=85.40 E-value=0.69 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888643
No 228
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=85.37 E-value=0.78 Score=49.04 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|++.|++|+|||+.++.+.+++...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 599999999999999999999988755
No 229
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=85.33 E-value=1.1 Score=46.40 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...+++|+|++|+|||..+.+++..-+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~ 47 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ 47 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999988766554443
No 230
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=85.31 E-value=0.69 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.+...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888643
No 231
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=85.30 E-value=0.68 Score=47.14 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999886544
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.29 E-value=0.72 Score=45.10 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999988877543
No 233
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=85.29 E-value=0.7 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888543
No 234
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=85.16 E-value=0.7 Score=50.30 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.-.|+|+|+||+||||++--+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 378899999999999999888775
No 235
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.15 E-value=0.69 Score=48.75 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..+.=|.||||+|||+.++.++-+..-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 46788999999999999999999876554
No 236
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.13 E-value=1.1 Score=51.43 Aligned_cols=52 Identities=27% Similarity=0.521 Sum_probs=36.2
Q ss_pred HhhccCCCC----CCchhHHHHHHHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 225 EAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 225 ~~Y~~~~~~----~PHifavA~~Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++||-+... .+|+ ....+.+... +-.+++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455544432 4676 3344555544 44578999999999999999999887653
No 237
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=85.10 E-value=0.67 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+---+.++|.||||||+..|.|+.-
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3455789999999999999998653
No 238
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=85.10 E-value=1.2 Score=46.12 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....++|.|++|+|||+.+.+++.-++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4569999999999999997665554544
No 239
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=85.06 E-value=1.4 Score=44.40 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=31.4
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+|++.++. ..++.++|.|..|+|||+..+.+.+.+...+
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 45556654 4578899999999999999999999888743
No 240
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=85.05 E-value=0.69 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999999988754
No 241
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=85.03 E-value=0.7 Score=47.25 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.+|||||+..|.+...+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988886543
No 242
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=85.02 E-value=0.73 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988886543
No 243
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.02 E-value=1.3 Score=48.90 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 241 TDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 241 A~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|...+..+.+ .+-+++++|+|+.|.|||+.++.+.++|.+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3445555544 455899999999999999999999998866
No 244
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=84.98 E-value=0.77 Score=46.73 Aligned_cols=27 Identities=33% Similarity=0.387 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467999999999999999999887654
No 245
>PRK13695 putative NTPase; Provisional
Probab=84.95 E-value=0.82 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|+|+|++|+|||+..+.+.+.+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999887754
No 246
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=84.79 E-value=0.75 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999998888653
No 247
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.77 E-value=1.1 Score=45.92 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....++|+|++|+|||..+.+++.-.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5788999999999999999888655444
No 248
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.76 E-value=0.73 Score=48.47 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998886543
No 249
>PRK04328 hypothetical protein; Provisional
Probab=84.76 E-value=1.1 Score=46.83 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...+++|+|++|+|||..+.+++..-+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998877655433
No 250
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.73 E-value=0.78 Score=45.67 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|++|||||+..+.+..-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999998888653
No 251
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.72 E-value=0.75 Score=47.49 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999998888654
No 252
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=84.72 E-value=0.87 Score=44.09 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.|+|+|-+|||||+.++.+-+.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998776
No 253
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.71 E-value=0.77 Score=46.11 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998888654
No 254
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=84.70 E-value=0.63 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.|.|.|+||||||+..|.++..+.
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5689999999999999999999987664
No 255
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=84.65 E-value=0.75 Score=48.05 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999887543
No 256
>PRK13768 GTPase; Provisional
Probab=84.63 E-value=0.94 Score=47.56 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|+|+|.+|+|||+.++.+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998654
No 257
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=84.62 E-value=0.99 Score=54.64 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|-.++|.|.||||||..++.++..+...+
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~~g 458 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLSRG 458 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 456899999999999999999987666544
No 258
>PRK02496 adk adenylate kinase; Provisional
Probab=84.61 E-value=0.84 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|.+|||||+.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998765
No 259
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.58 E-value=0.87 Score=46.28 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++..++|+|++|+|||..+.+++..-+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~ 45 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK 45 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh
Confidence 5789999999999999988776644433
No 260
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=84.52 E-value=0.74 Score=45.64 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=29.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH-HHcCCCCCchhhhhhhc-----hHHHhhc
Q 005424 257 IIISGESGAGKTETAKIAMQYL-AALGGGSGIEYEILKTN-----PILEAFG 302 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL-a~~~~~~~ie~~Il~sn-----pILEAFG 302 (697)
|.|+|-.|||||+.++.+-+.. ..+=....+..++++.+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999988776543 11111224445555533 2677888
No 261
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=84.48 E-value=0.56 Score=47.48 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=27.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCCCCchhhhhhhc-h----HHHhhcc
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTN-P----ILEAFGN 303 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~~~~~ie~~Il~sn-p----ILEAFGN 303 (697)
|.|+|-+|||||+.++++-++=+..=....+..++++-+ + |.+.||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~ 53 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGP 53 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhCh
Confidence 689999999999998866543000001124555555533 3 5556665
No 262
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.47 E-value=1.2 Score=52.09 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=37.7
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++|+-.... .+|+...-.+++ ...+-.+++|++|+.|.|||+.++.+.++|-+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i---~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHAL---ETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556554432 467665433332 23356788999999999999999999998865
No 263
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.46 E-value=0.79 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 264
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.46 E-value=0.81 Score=45.88 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788999999999999988886543
No 265
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=84.40 E-value=1 Score=42.88 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=23.0
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+.+....+.-.|+|.|.+|+|||+..+.+.
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 444445556779999999999999877664
No 266
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=84.40 E-value=0.78 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.495 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998888653
No 267
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=84.37 E-value=0.78 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|+|.|||||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998887753
No 268
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.35 E-value=0.79 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|-|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999887655
No 269
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=84.34 E-value=0.79 Score=47.17 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..+.+..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999998854
No 270
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.31 E-value=0.83 Score=45.66 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.+.+.|.|+||||||+..+.+...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999999887653
No 271
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.30 E-value=0.75 Score=48.88 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.++..+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999887644
No 272
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.26 E-value=0.82 Score=48.14 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999988765
No 273
>PF13173 AAA_14: AAA domain
Probab=84.26 E-value=0.98 Score=41.99 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.++|.|..|+|||+.++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998775
No 274
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=84.23 E-value=0.56 Score=56.43 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..|.|-|.|+||||||+.+|.+...+.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4588999999999999999999887644
No 275
>PRK04195 replication factor C large subunit; Provisional
Probab=84.23 E-value=1.1 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+....++|+|++|.|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999999999999998876
No 276
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=84.21 E-value=0.7 Score=53.58 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=25.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.+.|.|.|+||||||+..|.++..+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5789999999999999999999988654
No 277
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=84.19 E-value=1.3 Score=52.60 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.5
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
........+++++|.||+|+|||+.++.+.+....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999887644
No 278
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.15 E-value=1.3 Score=46.54 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
|++=.+-+++.+.+. .++.|++.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 444445555555544 3578999999999999999988653
No 279
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.14 E-value=1.3 Score=46.91 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.++++|++|.|||..++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999887655
No 280
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.11 E-value=0.83 Score=47.20 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|++|||||+..|.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 457889999999999999999887643
No 281
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.10 E-value=0.83 Score=47.88 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999988764
No 282
>PRK05973 replicative DNA helicase; Provisional
Probab=84.08 E-value=1.2 Score=46.77 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
...+.++|.|++|+|||..+-.++...+.-+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999999988887776543
No 283
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=84.07 E-value=2 Score=42.19 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45678899999999999999999998863
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=84.06 E-value=1.1 Score=44.61 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...+.+++.|.+|.|||..+..+.+.++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 35689999999999999999999888876
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.05 E-value=1 Score=45.69 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=24.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
++.|++.|.+|+|||+++-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999998888877754
No 286
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=84.02 E-value=1.3 Score=44.39 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.+.|+|++|+|||..+.++....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999998777655544
No 287
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=84.02 E-value=0.84 Score=47.65 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|++|||||+..|.+...+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999886543
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.01 E-value=0.87 Score=44.65 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.+|||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999988886543
No 289
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=83.97 E-value=0.82 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999988877654
No 290
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=83.95 E-value=1.4 Score=44.86 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....++|.|++|+|||..+..++...+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~ 46 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR 46 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5789999999999999999887665544
No 291
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=83.95 E-value=0.87 Score=45.53 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.+...+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999988886543
No 292
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=83.92 E-value=0.61 Score=54.41 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.|.|.|+||||||+..|.++..+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999999987664
No 293
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=83.90 E-value=0.87 Score=46.73 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999887654
No 294
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=83.87 E-value=0.88 Score=46.41 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.+|||||+..+.++..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999998887653
No 295
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=83.85 E-value=0.99 Score=45.28 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=22.2
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
....+..|++.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999999888877553
No 296
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=83.85 E-value=0.85 Score=46.63 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998888653
No 297
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.85 E-value=1.5 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+|++.|++|+|||+.++.+-+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999987654
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.84 E-value=0.62 Score=52.41 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
--.+-+-||||||||.++..+|+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4567889999999999999999998763
No 299
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=83.84 E-value=0.59 Score=54.43 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999999999886
No 300
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=83.82 E-value=0.85 Score=45.99 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999886543
No 301
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.82 E-value=0.88 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888763
No 302
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=83.82 E-value=1.3 Score=48.03 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.+-.|+|+|-||+|||+.++.+.++|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 303
>PRK10646 ADP-binding protein; Provisional
Probab=83.81 E-value=1.9 Score=42.51 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.-.|++.|+-|||||+-+|-+++.|
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998877
No 304
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=83.78 E-value=0.85 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887654
No 305
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.77 E-value=1.2 Score=51.60 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 234 ~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..|+...-.++. ...+-.+++|++|++|+|||+.++.+.+.|-+.
T Consensus 19 q~~v~~~L~~~i---~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAAL---RQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 356544433332 234567889999999999999999999988653
No 306
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.74 E-value=1.4 Score=44.54 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHhc--CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 245 IREMIRD--EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 245 y~~m~~~--~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
...|+.. .....++|+|++|+|||..+.+++..++..
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3344443 246779999999999999999888776543
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=83.72 E-value=0.93 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.+.+.|.|.||||||+..+.+...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999988887654
No 308
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.70 E-value=0.89 Score=46.18 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|.+.|.|++|||||+..|.+...+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999988886543
No 309
>PRK14530 adenylate kinase; Provisional
Probab=83.70 E-value=0.94 Score=45.93 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|-+|||||+.++.+.+.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999998776
No 310
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=83.69 E-value=0.91 Score=45.79 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999998888654
No 311
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=83.69 E-value=0.9 Score=44.81 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888875543
No 312
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=83.66 E-value=0.91 Score=46.94 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..+.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999886543
No 313
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=83.66 E-value=0.65 Score=54.21 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=24.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..|.|.|.|+||||||+..|.++..+.
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4679999999999999999999988654
No 314
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.62 E-value=0.51 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=20.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
..+..|+|+||.|+||+..++.+-+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5678899999999999988776544
No 315
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.59 E-value=1.9 Score=46.03 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
|-+=.+.....-.++-. .++.+++.|++|+|||...+..++
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhc
Confidence 33334444444444444 378999999999999998877654
No 316
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.55 E-value=0.9 Score=46.99 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999988876543
No 317
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=83.55 E-value=0.89 Score=46.50 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988887554
No 318
>PRK10436 hypothetical protein; Provisional
Probab=83.54 E-value=0.86 Score=52.26 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=26.8
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++.+.. +..=-|||+|..|||||++...+++++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3444442 23457999999999999999988888743
No 319
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=83.52 E-value=0.88 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.|..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999887754
No 320
>PRK13947 shikimate kinase; Provisional
Probab=83.48 E-value=1.1 Score=43.33 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987655
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=83.47 E-value=1.1 Score=47.74 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 239 avA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..++.....+++.+.-++++|.|.+|||||+..+.+...+.
T Consensus 96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34666666677666668999999999999999998877654
No 322
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.46 E-value=0.91 Score=47.66 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.|...
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888654
No 323
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=83.45 E-value=1.2 Score=43.97 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..-|+|.|-.|||||+.++.+-+.|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999888764
No 324
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.43 E-value=0.95 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999998764
No 325
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=83.39 E-value=0.93 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+..-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999998887543
No 326
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.39 E-value=1.4 Score=51.27 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=36.6
Q ss_pred HhhccCCCC----CCchhHHHHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 225 EAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 225 ~~Y~~~~~~----~PHifavA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++|+-+... .+|+-.. ..++.. .+-.+++|++|+.|.|||+.++.+.+.|-+
T Consensus 8 ~k~rP~~f~divGq~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544322 4666543 333333 456788999999999999999999998854
No 327
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=83.37 E-value=0.92 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887543
No 328
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=83.37 E-value=0.94 Score=46.70 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999988886543
No 329
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.36 E-value=0.92 Score=46.76 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888653
No 330
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=83.35 E-value=1 Score=44.96 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887653
No 331
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=83.33 E-value=0.91 Score=47.82 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.|...+
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999998765
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.32 E-value=0.72 Score=51.95 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
-+..|++=|-||||||||+....+++-+..-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 3678999999999999999999998876543
No 333
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.30 E-value=1.2 Score=39.48 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.++|.|+.|+|||..+...+..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 47899999999999999998888765
No 334
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=83.30 E-value=0.95 Score=46.54 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988886543
No 335
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=83.26 E-value=0.92 Score=47.32 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.+...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999887543
No 336
>PRK00023 cmk cytidylate kinase; Provisional
Probab=83.25 E-value=1 Score=46.56 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+-.|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988773
No 337
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=83.24 E-value=0.96 Score=45.84 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.++..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 338
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.22 E-value=0.94 Score=46.93 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999886543
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.19 E-value=0.93 Score=45.27 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....+.|.|+||||||+..|.+...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999887654
No 340
>PRK09087 hypothetical protein; Validated
Probab=83.14 E-value=1.6 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.+..++|.|+||+|||+.++.+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999988885543
No 341
>PRK06620 hypothetical protein; Validated
Probab=83.13 E-value=1.7 Score=44.56 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCChhHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~i 274 (697)
.+++|.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888754
No 342
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.12 E-value=0.98 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999888754
No 343
>PLN02318 phosphoribulokinase/uridine kinase
Probab=83.12 E-value=1.5 Score=51.89 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHHHhcC-ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~-~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
-|=|-++-+|-+-+..+. ..--|-|.|.||||||+.++.|...+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 355667777766665533 33577789999999999999999876
No 344
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=83.07 E-value=1 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|++|||||+..+.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887653
No 345
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=83.06 E-value=1.8 Score=42.08 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
++.--..++..|-...+.-.|+|.|.+|||||+..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHh
Confidence 333334566666556667779999999999999977653
No 346
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.05 E-value=1.5 Score=51.52 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=33.4
Q ss_pred CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 234 ~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..|+-..-.+++ ...+..+++|++|++|.|||+.++.+.++|-+.
T Consensus 21 q~~~~~~L~~~i---~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAI---AEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 466554333333 234567999999999999999999999998653
No 347
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.00 E-value=1 Score=49.01 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=48.0
Q ss_pred hcCCcccccCCeEEEecCCccCCCCChhHHHhhccCC-----CCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhH
Q 005424 195 KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS-----IESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (697)
Q Consensus 195 ~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~-----~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe 269 (697)
+-|.-|+..|.-=+-||-|+...-|+-- .+.--.+- .+-|-|+ +. +....+=-|+++|..|||||+
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~~a~v-lR~Ip~~i~~~e~LglP~i~-------~~-~~~~~~GLILVTGpTGSGKST 140 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGGYALV-LRLIPSKIPTLEELGLPPIV-------RE-LAESPRGLILVTGPTGSGKST 140 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCCcEEE-EeccCccCCCHHHcCCCHHH-------HH-HHhCCCceEEEeCCCCCcHHH
Confidence 3466788888888888888765322110 00000000 0124433 22 224556789999999999999
Q ss_pred HHHHHHHHHHH
Q 005424 270 TAKIAMQYLAA 280 (697)
Q Consensus 270 ~tK~il~yLa~ 280 (697)
+.-.++.|+-.
T Consensus 141 TlAamId~iN~ 151 (353)
T COG2805 141 TLAAMIDYINK 151 (353)
T ss_pred HHHHHHHHHhc
Confidence 99999999865
No 348
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.97 E-value=1.3 Score=46.53 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
....++|+|++|+|||..+-+++...+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 56889999999999999888776665543
No 349
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.93 E-value=0.99 Score=45.37 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.+...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467899999999999999988876544
No 350
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=82.91 E-value=2.4 Score=46.70 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=27.9
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+..-.|-|+|.+|||||+.+..++.+|...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5678899999999999999999999998754
No 351
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=82.90 E-value=1 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 352
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.86 E-value=0.99 Score=46.66 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999888854
No 353
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=82.84 E-value=0.74 Score=54.98 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..|.|.|.|+||||||+..|.++..+.
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999988654
No 354
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=82.84 E-value=1 Score=44.98 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988887654
No 355
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=82.80 E-value=1.1 Score=48.77 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...++|+|+||+||||++-.+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 588999999999999998888775
No 356
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.77 E-value=1.1 Score=43.87 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456889999999999999988887643
No 357
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.76 E-value=0.95 Score=45.73 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.--.|.|+|.||+|||+..|.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 356899999999999998887744
No 358
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=82.74 E-value=1 Score=46.52 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35788999999999999999988653
No 359
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=82.71 E-value=1 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998877543
No 360
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=82.69 E-value=1 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886543
No 361
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.64 E-value=1 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..+.+...+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888876543
No 362
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=82.63 E-value=2.4 Score=50.19 Aligned_cols=112 Identities=30% Similarity=0.422 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC--Cc---h-hhhhh---hchHHHhhcc----
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GI---E-YEILK---TNPILEAFGN---- 303 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~--~i---e-~~Il~---snpILEAFGN---- 303 (697)
||+..++-.+.+ ..||-+||-||+|||||+ .|=|||+..|-.. .| + .||.+ |.-+=|..|+
T Consensus 52 I~~~r~~il~~v---e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 52 IYKYRDQILYAV---EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHH---HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 455444433333 568999999999999997 5789998865322 11 1 12222 4455666665
Q ss_pred --ccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCceeeecCC-CCCcchh
Q 005424 304 --AKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAE-GERAYHI 356 (697)
Q Consensus 304 --AKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~-gERNfHI 356 (697)
.-|+|=++++ ++=.+|-|=++|-+--=.+.+=+|+|--|+--.+ .||+-|-
T Consensus 126 ~VGY~IRFed~t--s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~T 179 (674)
T KOG0922|consen 126 EVGYTIRFEDST--SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHT 179 (674)
T ss_pred eeeeEEEecccC--CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHH
Confidence 2233322222 2245566656666555555555688877776654 6899885
No 363
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.61 E-value=1.1 Score=45.34 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.+|||||+..+.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999988886543
No 364
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.58 E-value=1 Score=45.53 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888653
No 365
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.58 E-value=1.1 Score=43.66 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.||||||+..+.+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999888654
No 366
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.57 E-value=1.1 Score=43.72 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988877554
No 367
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.57 E-value=1.3 Score=52.52 Aligned_cols=120 Identities=27% Similarity=0.363 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC----Cc-h-hhhh---hhchHHHhhcccccc
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GI-E-YEIL---KTNPILEAFGNAKTS 307 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~----~i-e-~~Il---~snpILEAFGNAKT~ 307 (697)
||++-+.- |.--++||.|||.||.|||||+- +-|||..-|-+. +. + .++. -|..+-|-.|----.
T Consensus 357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 56655543 22347899999999999999974 678887755321 11 1 1111 122333333211100
Q ss_pred CCCCCCcc----ccEEEEEecCCCCccceeeeeeeccCceeeecCC-CCCcc--hhhHHHhc
Q 005424 308 RNDNSSRF----GKLIEIHFSETGKISGANIQTFLLEKSRVVQCAE-GERAY--HIFYQLCV 362 (697)
Q Consensus 308 rNdNSSRF----GKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~-gERNf--HIFYqLla 362 (697)
.=--|=|| +.-..|.|=.+|-+---.+..-+|+|-+|+--.+ .||+- .|..-|+.
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk 492 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLK 492 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHH
Confidence 01112333 2335566667787777777778899988876544 57754 45555554
No 368
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.56 E-value=1.9 Score=48.23 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=30.9
Q ss_pred HHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 244 AIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 244 Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++++++. +-++++|++|+.|.|||+.++.+-++|-+
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45666655 56789999999999999999999988865
No 369
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.56 E-value=0.73 Score=48.46 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=26.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+..+.+.|.|+||||||+..|.++..+..-+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~ 54 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNL 54 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 5688999999999999999999988765433
No 370
>PLN02796 D-glycerate 3-kinase
Probab=82.52 E-value=1 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
-|-|+|.||||||+.++.+...|.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 478899999999999998887764
No 371
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=82.48 E-value=1.6 Score=48.28 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.6
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+..-..|+|+|++|+|||+.++.+.+++-..
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3445789999999999999999999998753
No 372
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=82.48 E-value=1.1 Score=46.74 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..+.+...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886543
No 373
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.46 E-value=1.1 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999998887653
No 374
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=82.44 E-value=1 Score=46.07 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.+...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999887654
No 375
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=82.36 E-value=1.3 Score=44.97 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..|.|+|..|||||+..+.+++.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 35889999999999999999987653
No 376
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=82.36 E-value=1.1 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..+.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999888865
No 377
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.30 E-value=1.8 Score=46.87 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.-+....+-+...+|+++|-+|||||+..+.+.+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334444433333444678899999999999999999987655
No 378
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=82.23 E-value=1 Score=46.77 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888654
No 379
>PRK06526 transposase; Provisional
Probab=82.21 E-value=1.3 Score=46.83 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+.+++.|.+|+|||..+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988777543
No 380
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=82.18 E-value=1.1 Score=45.92 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888886543
No 381
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=82.15 E-value=1.1 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.+...
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998888654
No 382
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.11 E-value=1.1 Score=47.76 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.|.|+||||||+..|.+...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999886543
No 383
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.10 E-value=1.2 Score=46.48 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..+.|...+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999887654
No 384
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=82.10 E-value=1.1 Score=48.05 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.++..+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999999999886544
No 385
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.09 E-value=1 Score=47.28 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999998877543
No 386
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.07 E-value=1.1 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999988754
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=82.07 E-value=1 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
..++|+|++|+|||+..|.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 788999999999999999984
No 388
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.02 E-value=1 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.=-|+|+|..|||||++...+++++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 34688999999999999998888873
No 389
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=82.01 E-value=1.2 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|.|-+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887754
No 390
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=82.00 E-value=1.2 Score=52.37 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
|-|.++=.++|.. +.++.-.|+|+|-||||||+.++.+.+.|..
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5555555555533 2345568999999999999999999887754
No 391
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=81.96 E-value=1.2 Score=44.76 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|++|||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887543
No 392
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=81.95 E-value=0.78 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++.++
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567999999999999999999997654
No 393
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=81.95 E-value=1 Score=52.35 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++-.++=|.||||||||+.+|.++..+--
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567788999999999999999887644
No 394
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.94 E-value=1.2 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..+.+..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999998777743
No 395
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=81.93 E-value=1.1 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999998888654
No 396
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=81.92 E-value=1.1 Score=45.57 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|++|||||+..|.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999887543
No 397
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=81.92 E-value=1.1 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.|...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998887643
No 398
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.90 E-value=1.1 Score=46.90 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 357899999999999999998885543
No 399
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=81.88 E-value=1.3 Score=53.29 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
.+-.++|.|.||||||+.++.++..+...++
T Consensus 433 ~~~n~~I~G~tGsGKS~~~~~l~~~~~~~~~ 463 (785)
T TIGR00929 433 VLGHTLIFGPTGSGKTTLLNFLLAQMQKYGG 463 (785)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhccCC
Confidence 3788999999999999999999877665543
No 400
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=81.88 E-value=1.3 Score=45.65 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|.|.|.||||||+.+|.+.+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997755
No 401
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=81.87 E-value=1.2 Score=46.68 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998886543
No 402
>PRK06921 hypothetical protein; Provisional
Probab=81.87 E-value=2.4 Score=45.07 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....+++.|++|+|||..+..|.+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4689999999999999999888877654
No 403
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.87 E-value=1.5 Score=47.81 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 240 vA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
-.+.||-.+... ...+|+|+|+.|||||+..+.++.++-
T Consensus 130 ~~~~ayL~~~ie-~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 130 PEQAAYLWLAIE-ARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHHHHHHH-cCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 345566444333 358999999999999999999988763
No 404
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=81.85 E-value=1.1 Score=46.49 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.||||||+..|.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 356889999999999999999887643
No 405
>PLN02348 phosphoribulokinase
Probab=81.85 E-value=1.9 Score=48.52 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
++.--|-|+|-||||||+.++.|.+.|.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444566899999999999999988774
No 406
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=81.78 E-value=1.2 Score=44.65 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999887654
No 407
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=81.77 E-value=1.1 Score=47.06 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|+||||||+..|.+...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45788999999999999999888654
No 408
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=81.75 E-value=3.2 Score=51.14 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=28.5
Q ss_pred HHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 244 AIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 244 Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+++..+. ...+++++|+|..|.|||.+++.+++-|...
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3344444 3445667899999999999999999988653
No 409
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=81.74 E-value=1 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~i 274 (697)
+.-.+.|.|+||||||+....+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457889999999999875544
No 410
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.70 E-value=1.2 Score=46.50 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999998888653
No 411
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=81.69 E-value=1.1 Score=47.06 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 412
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=81.63 E-value=1.1 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.+|||||+..+.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888654
No 413
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.62 E-value=1.7 Score=51.61 Aligned_cols=53 Identities=26% Similarity=0.444 Sum_probs=38.4
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHHhc-CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~~~-~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++|+-+... .+|+-.+ ++++... +-.+++|++|+.|.|||+.++.+.+.|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4556655433 5777433 4444444 44899999999999999999999998865
No 414
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.62 E-value=1.8 Score=50.45 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCc-eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 242 DTAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 242 ~~Ay~~m~~~~~-nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....+.+..... .+-+|++|.+|+|||++.|.+.+-|
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 345555554443 5667789999999999999988776
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=81.60 E-value=0.8 Score=48.30 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
|...|..-.+.|-++|.|++|+|||+.++.+.+.+.
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 334455557889999999999999999888877553
No 416
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.53 E-value=1.2 Score=45.96 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999988886543
No 417
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=81.52 E-value=1.2 Score=45.67 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998888653
No 418
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=81.51 E-value=1.1 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.7
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~y 277 (697)
++++|.+|||||+..+.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999987764
No 419
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.49 E-value=1.2 Score=47.09 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998888654
No 420
>PRK09099 type III secretion system ATPase; Provisional
Probab=81.44 E-value=4.3 Score=46.45 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+...++.-.+.|.+.|.|.||+|||+..+.+...
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44555655678999999999999999998777553
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=81.41 E-value=1.2 Score=42.48 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999998887543
No 422
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.41 E-value=1.2 Score=45.98 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.|...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999999988754
No 423
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=81.39 E-value=1.2 Score=46.45 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.|...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999998888654
No 424
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=81.38 E-value=0.92 Score=52.70 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..+.+-|.|+||||||+..+.+++|+-.
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45788889999999999999999999754
No 425
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=81.34 E-value=1.2 Score=47.70 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999887644
No 426
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.33 E-value=1.2 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+..-
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999998888653
No 427
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.30 E-value=1.2 Score=46.84 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.+...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999998888654
No 428
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.21 E-value=1.3 Score=45.93 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999999886643
No 429
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=81.20 E-value=2.8 Score=47.93 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHH
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
++...-.|...+..-.+.|.+.|.|.||+|||+..+.+++
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 3344445556666667889999999999999999877764
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=81.19 E-value=1.8 Score=42.77 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
..+|.|..|+|||.+...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999999998888888
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=81.16 E-value=1.4 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
-|+|.|-+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999877653
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=81.14 E-value=2.1 Score=43.53 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....++|.|++|+|||..+..++...+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g 44 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNG 44 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999998887766544433
No 433
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=81.08 E-value=1.3 Score=46.56 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..+.|...+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357889999999999999999987644
No 434
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=81.01 E-value=2.2 Score=54.39 Aligned_cols=99 Identities=27% Similarity=0.314 Sum_probs=50.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC--Cc---hhhhhh----hchHHHhhc----cc---cccCCCCCCcc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GI---EYEILK----TNPILEAFG----NA---KTSRNDNSSRF 315 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~--~i---e~~Il~----snpILEAFG----NA---KT~rNdNSSRF 315 (697)
..+|.+||+||+|||||+ .|=+++...+.+. .| +-+-+. |.-|-+.+| .. ++..++..
T Consensus 87 ~~~~VviI~GeTGSGKTT---qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~--- 160 (1294)
T PRK11131 87 RDHQVVIVAGETGSGKTT---QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQV--- 160 (1294)
T ss_pred HhCCeEEEECCCCCCHHH---HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCcccc---
Confidence 357999999999999999 3555665544221 11 111111 222333333 21 11112211
Q ss_pred ccEEEEEecCCCCccceeeeeeeccCceeeecCC-CCCcchh
Q 005424 316 GKLIEIHFSETGKISGANIQTFLLEKSRVVQCAE-GERAYHI 356 (697)
Q Consensus 316 GKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~-gERNfHI 356 (697)
++-.+|.|.+.|.+.--....-+|.+-+++--.+ .||..++
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~ 202 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI 202 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCcccccccc
Confidence 2334566767776543222233466655555554 5688774
No 435
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=80.99 E-value=1.2 Score=48.94 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|...
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887643
No 436
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.99 E-value=1.2 Score=46.32 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.+|||||+..|.+...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999987654
No 437
>PRK13946 shikimate kinase; Provisional
Probab=80.98 E-value=1.3 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999987766
No 438
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=80.98 E-value=1.1 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=24.8
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
-...+.|.++|.|.+|||||+..+.+|+.+-..
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~i~~ll~~~~~~ 42 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQAIRHLLDQIRAR 42 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred ccchhhCcEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345678999999999999999888888766443
No 439
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=80.96 E-value=1.3 Score=46.45 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999999988754
No 440
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.94 E-value=1.2 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998887653
No 441
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.94 E-value=1.3 Score=46.91 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+.-.
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35788999999999999998888653
No 442
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=80.93 E-value=1.5 Score=46.84 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.|.|+|.||||||+.+..++..|...|
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999998765
No 443
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=80.89 E-value=1.3 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..+.+...
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887543
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=80.88 E-value=1.6 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.7
Q ss_pred CceeEEEEeCCCCCChhHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAK 272 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK 272 (697)
.+.+.|.|+|+||||||+..+
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 578999999999999999988
No 445
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=80.85 E-value=0.84 Score=54.32 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..|.+.|.|+||||||+..|.++..+.-
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35689999999999999999999887643
No 446
>PRK07429 phosphoribulokinase; Provisional
Probab=80.85 E-value=1.3 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.--|-|+|.||||||+.++.+.+.|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34467789999999999999887665
No 447
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.73 E-value=2.1 Score=45.07 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=26.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.+.++++|.+|+|||..+..+.++|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 448
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.72 E-value=2.1 Score=49.72 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=39.0
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHH-hcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~-~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.++|+-+... .+|+-. +.+++. ..+-++++|++|..|.|||+.++.+.+.|-+
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4566655433 466654 444444 4567899999999999999999999998865
No 449
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.72 E-value=1.2 Score=44.63 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~y 277 (697)
.+.|.|+||||||+..|.+...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7889999999999998888653
No 450
>PRK01184 hypothetical protein; Provisional
Probab=80.71 E-value=1.3 Score=43.51 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=15.8
Q ss_pred EEEEeCCCCCChhHHHHH
Q 005424 256 SIIISGESGAGKTETAKI 273 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~ 273 (697)
-|+++|.+|||||+.++.
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998873
No 451
>PRK13949 shikimate kinase; Provisional
Probab=80.71 E-value=1.4 Score=43.34 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|.|..|||||+.+|.+-+.|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999887765
No 452
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=80.71 E-value=1.3 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|.|-+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987654
No 453
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.71 E-value=1.3 Score=45.04 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999988875543
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.68 E-value=1.3 Score=50.93 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 241 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....++++... ..=-||++|..|||||++...+++++-.
T Consensus 246 ~~~~~~~~~~~-p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 246 QLARLLRLLNR-PQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHHHHHhC-CCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 33455555533 2345678999999999999999998865
No 455
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=80.65 E-value=1.3 Score=46.35 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998887653
No 456
>PRK14532 adenylate kinase; Provisional
Probab=80.59 E-value=1.4 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|++.|-+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997654
No 457
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=80.55 E-value=1.2 Score=46.17 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.+...
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999998887543
No 458
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=80.52 E-value=1.5 Score=39.21 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.0
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAM 275 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il 275 (697)
|+|.|.+|+|||...+.++
T Consensus 2 I~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 8999999999998765554
No 459
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.51 E-value=2.8 Score=45.27 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.2
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+-.+++|++|++|.|||+.++.+.+.|..
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455789999999999999999999988754
No 460
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.47 E-value=1.3 Score=48.14 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999887654
No 461
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=80.46 E-value=0.94 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..|.|.|.|+||||||+..|.++..+.
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999987653
No 462
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=80.41 E-value=1 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~ 276 (697)
.|.|+|.+|||||+.++++..
T Consensus 3 ~igitG~igsGKst~~~~l~~ 23 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988875
No 463
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=80.39 E-value=1.3 Score=46.39 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|++|||||+..|.+...+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357889999999999999888876543
No 464
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.38 E-value=1.4 Score=45.46 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..|.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999998888654
No 465
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.38 E-value=1.4 Score=44.99 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|.+|||||+..|.+...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356899999999999999998886544
No 466
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=80.37 E-value=1.3 Score=46.87 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887643
No 467
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=80.37 E-value=1.3 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
+..+.+.|.|+||||||+..+.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4578899999999999999988754
No 468
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=80.34 E-value=1.3 Score=48.84 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998888654
No 469
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.31 E-value=1.3 Score=50.92 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGG 284 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~ 284 (697)
..|.|-+-|+|||||++.++.+++|+-.-+|+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 45999999999999999999999999776654
No 470
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=80.24 E-value=1.3 Score=45.56 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+..+.+.|.|++|||||+..+.+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45788999999999999988877543
No 471
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.21 E-value=2.5 Score=46.33 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=32.1
Q ss_pred HHHHHHH--hcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 243 TAIREMI--RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 243 ~Ay~~m~--~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+|+.+. ..+-++++|++|.+|.|||+.++.+-+.|-+-
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4555555 45788999999999999999999999988653
No 472
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=80.12 E-value=1.3 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..+.+.-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999998887743
No 473
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=80.10 E-value=1.4 Score=45.08 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=20.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
+..+.+.|.|++|||||+..|.+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3578899999999999998777643
No 474
>PRK05642 DNA replication initiation factor; Validated
Probab=80.08 E-value=3.3 Score=42.87 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-.++|.|++|+|||..++.+..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999998888777654
No 475
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=80.07 E-value=1.3 Score=40.94 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.5
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAM 275 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il 275 (697)
|++.|.+|||||..++.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999998887
No 476
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=80.04 E-value=2.1 Score=51.72 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.0
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+...+.-.+++|.|++|.|||+.++.+-+.+
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 566777777778899999999999999999998765
No 477
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=80.04 E-value=2.7 Score=45.52 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.-|..+..+.-..|-|+|.+|||||+..+.+++.|..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456667788899999999999999999999998754
No 478
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.02 E-value=1.5 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..+.+..
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999888764
No 479
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.97 E-value=2 Score=41.57 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|.++|.+|+|||+.++.+..++...+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 78899999999999999998886654
No 480
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=79.97 E-value=1.5 Score=45.29 Aligned_cols=43 Identities=35% Similarity=0.573 Sum_probs=33.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcCCCCCchhhhhhhchHHHhh
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAF 301 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~~ie~~Il~snpILEAF 301 (697)
+=.|+|.|.=|+|||+.++.+-+.|-+ .+..++..-||+|+-|
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~-----~~~~E~vednp~L~~F 46 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF-----KVFYELVEDNPFLDLF 46 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC-----ceeeecccCChHHHHH
Confidence 457999999999999999999888742 3334555667888766
No 481
>PRK05439 pantothenate kinase; Provisional
Probab=79.88 E-value=2.8 Score=45.74 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=24.9
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..--|.|+|-+|||||+.++.+...|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355677889999999999999988876654
No 482
>PRK09183 transposase/IS protein; Provisional
Probab=79.84 E-value=1.8 Score=45.74 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.++|.|++|+|||..+..+...++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999988655443
No 483
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=79.80 E-value=3 Score=46.57 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..++|+|.+|+|||..++.+.+.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 478999999999999999999988764
No 484
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.76 E-value=1.4 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.+|||||+..|.+...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999888553
No 485
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=79.76 E-value=1.2 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..|.+.|.|+||||||+..|.++..+.
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4679999999999999999999988753
No 486
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=79.72 E-value=1.9 Score=41.86 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.-.+|+|++|+|||+....|.-.|
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999996664433
No 487
>PRK00625 shikimate kinase; Provisional
Probab=79.65 E-value=1.7 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|++.|-.|||||+.+|.+-+.|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999997765
No 488
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=79.64 E-value=1.5 Score=45.66 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|++|||||+..|.|..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999888754
No 489
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.62 E-value=1.5 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.+|||||+..|.+..-
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999888653
No 490
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=79.61 E-value=2.4 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+|++.|++|+|||+.+|.+-+.+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 689999999999999999887654
No 491
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=79.56 E-value=1.5 Score=45.52 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|++|||||+..+.+...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998888653
No 492
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=79.55 E-value=2.1 Score=43.70 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=24.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
...+.++|+|.+|+|||..+..++..++.-
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356899999999999999998887766653
No 493
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=79.53 E-value=3.2 Score=40.57 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.1
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.++-+|++|+.|.+|.||++.++.+.+.+..-.
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 456799999999999999999999998876543
No 494
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.48 E-value=2.3 Score=47.32 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=33.1
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
++...++...+-.|+|.|.+|.|||.++|.+++-+-..+.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3666666666667999999999999999999999887643
No 495
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.44 E-value=1.5 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..+.+..
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999998877744
No 496
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=79.42 E-value=1.6 Score=47.31 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 3457899999999999999998877663
No 497
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=79.39 E-value=1.6 Score=46.91 Aligned_cols=29 Identities=34% Similarity=0.383 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
++.+.+.+.|++|||||+..|.++..+..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34678899999999999999999776543
No 498
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=79.37 E-value=1.1 Score=53.61 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.|.|.|+||||||+..|.++..+.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999987653
No 499
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.36 E-value=1.6 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|.+|||||+..+.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999888754
No 500
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.34 E-value=1.5 Score=46.62 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|++|||||+..+.+...+
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999988886543
Done!