Query 005424
Match_columns 697
No_of_seqs 316 out of 1510
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 00:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-171 6E-176 1486.7 46.7 595 85-694 2-620 (783)
2 1kk8_A Myosin heavy chain, str 100.0 5E-168 2E-172 1468.9 49.5 590 91-695 4-622 (837)
3 1w9i_A Myosin II heavy chain; 100.0 2E-167 7E-172 1449.0 46.8 589 88-694 4-611 (770)
4 1w7j_A Myosin VA; motor protei 100.0 3E-164 9E-169 1430.7 46.9 566 118-695 9-593 (795)
5 1g8x_A Myosin II heavy chain f 100.0 7E-164 2E-168 1459.8 45.6 590 87-694 3-611 (1010)
6 2v26_A Myosin VI; calmodulin-b 100.0 6E-162 2E-166 1410.5 45.9 563 121-695 2-617 (784)
7 2ycu_A Non muscle myosin 2C, a 100.0 2E-161 6E-166 1439.5 49.5 569 113-695 4-593 (995)
8 1i84_S Smooth muscle myosin he 100.0 1E-161 5E-166 1468.1 44.9 590 93-695 6-624 (1184)
9 4anj_A Unconventional myosin-V 100.0 4E-161 1E-165 1433.9 44.7 566 118-695 3-621 (1052)
10 2dfs_A Myosin-5A; myosin-V, in 100.0 5E-160 2E-164 1436.3 43.4 566 118-695 9-593 (1080)
11 1lkx_A Myosin IE heavy chain; 100.0 3E-156 1E-160 1347.0 39.7 517 168-695 6-547 (697)
12 1jbk_A CLPB protein; beta barr 95.9 0.0047 1.6E-07 57.1 3.7 33 248-280 37-69 (195)
13 2p65_A Hypothetical protein PF 95.5 0.018 6E-07 53.3 5.9 64 216-280 5-69 (187)
14 4eun_A Thermoresistant glucoki 94.7 0.018 6.2E-07 55.6 3.7 33 246-278 21-53 (200)
15 3uie_A Adenylyl-sulfate kinase 94.5 0.031 1.1E-06 53.9 4.9 30 250-279 21-50 (200)
16 3c8u_A Fructokinase; YP_612366 94.1 0.044 1.5E-06 53.3 5.0 30 251-280 19-48 (208)
17 3bos_A Putative DNA replicatio 94.1 0.053 1.8E-06 52.3 5.5 38 244-281 42-79 (242)
18 1ex7_A Guanylate kinase; subst 94.0 0.027 9.1E-07 55.2 3.1 22 257-278 4-25 (186)
19 1kgd_A CASK, peripheral plasma 93.9 0.026 9.1E-07 53.7 2.9 25 254-278 5-29 (180)
20 3ec2_A DNA replication protein 93.8 0.036 1.2E-06 52.3 3.6 29 252-280 36-64 (180)
21 1zp6_A Hypothetical protein AT 93.7 0.032 1.1E-06 52.7 3.1 29 248-276 3-31 (191)
22 2w58_A DNAI, primosome compone 93.7 0.054 1.8E-06 51.8 4.6 26 255-280 55-80 (202)
23 1lvg_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 54.0 3.0 26 254-279 4-29 (198)
24 1qhx_A CPT, protein (chloramph 93.5 0.036 1.2E-06 51.8 3.0 25 254-278 3-27 (178)
25 2eyu_A Twitching motility prot 93.4 0.063 2.1E-06 54.9 4.9 37 244-281 16-52 (261)
26 3a00_A Guanylate kinase, GMP k 93.4 0.029 1E-06 53.5 2.2 25 255-279 2-26 (186)
27 3tr0_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 52.1 3.1 26 253-278 6-31 (205)
28 1zuh_A Shikimate kinase; alpha 93.1 0.057 1.9E-06 50.2 3.6 26 253-278 6-31 (168)
29 3asz_A Uridine kinase; cytidin 92.8 0.062 2.1E-06 51.8 3.6 27 252-278 4-30 (211)
30 3t61_A Gluconokinase; PSI-biol 92.8 0.059 2E-06 51.7 3.3 24 255-278 19-42 (202)
31 1znw_A Guanylate kinase, GMP k 92.8 0.051 1.8E-06 52.7 2.9 27 252-278 18-44 (207)
32 3vaa_A Shikimate kinase, SK; s 92.8 0.066 2.2E-06 51.6 3.7 26 253-278 24-49 (199)
33 1knq_A Gluconate kinase; ALFA/ 92.7 0.078 2.7E-06 49.5 4.0 26 253-278 7-32 (175)
34 3kb2_A SPBC2 prophage-derived 92.7 0.062 2.1E-06 49.4 3.3 23 256-278 3-25 (173)
35 2chg_A Replication factor C sm 92.7 0.1 3.5E-06 49.1 4.9 36 245-280 29-64 (226)
36 3tau_A Guanylate kinase, GMP k 92.6 0.067 2.3E-06 52.1 3.5 27 252-278 6-32 (208)
37 2j41_A Guanylate kinase; GMP, 92.5 0.051 1.7E-06 51.8 2.5 26 253-278 5-30 (207)
38 1njg_A DNA polymerase III subu 92.5 0.14 4.9E-06 48.5 5.6 30 251-280 42-71 (250)
39 1kht_A Adenylate kinase; phosp 92.5 0.07 2.4E-06 50.0 3.4 26 254-279 3-28 (192)
40 1m7g_A Adenylylsulfate kinase; 92.4 0.11 3.8E-06 50.4 4.9 31 249-279 20-50 (211)
41 2qor_A Guanylate kinase; phosp 92.4 0.054 1.9E-06 52.3 2.5 27 252-278 10-36 (204)
42 2kjq_A DNAA-related protein; s 92.3 0.084 2.9E-06 49.2 3.7 28 253-280 35-62 (149)
43 3iij_A Coilin-interacting nucl 92.2 0.075 2.6E-06 50.0 3.2 26 253-278 10-35 (180)
44 2pez_A Bifunctional 3'-phospho 92.2 0.097 3.3E-06 49.2 4.0 28 253-280 4-31 (179)
45 1s96_A Guanylate kinase, GMP k 92.2 0.067 2.3E-06 53.3 3.0 27 252-278 14-40 (219)
46 1rz3_A Hypothetical protein rb 92.1 0.11 3.7E-06 50.2 4.3 32 252-283 20-51 (201)
47 2bbw_A Adenylate kinase 4, AK4 92.0 0.089 3E-06 52.4 3.7 25 254-278 27-51 (246)
48 2rhm_A Putative kinase; P-loop 92.0 0.094 3.2E-06 49.3 3.7 26 253-278 4-29 (193)
49 1ye8_A Protein THEP1, hypothet 91.9 0.094 3.2E-06 50.4 3.6 23 256-278 2-24 (178)
50 1z6g_A Guanylate kinase; struc 91.9 0.064 2.2E-06 52.9 2.4 27 252-278 21-47 (218)
51 1htw_A HI0065; nucleotide-bind 91.9 0.1 3.5E-06 49.5 3.7 27 252-278 31-57 (158)
52 1np6_A Molybdopterin-guanine d 91.8 0.11 3.7E-06 50.2 3.8 28 255-282 7-34 (174)
53 1odf_A YGR205W, hypothetical 3 91.7 0.18 6E-06 52.5 5.6 30 251-280 28-57 (290)
54 1nks_A Adenylate kinase; therm 91.7 0.088 3E-06 49.2 3.0 25 256-280 3-27 (194)
55 2f1r_A Molybdopterin-guanine d 91.6 0.049 1.7E-06 52.4 1.2 27 255-281 3-29 (171)
56 1p9r_A General secretion pathw 91.6 0.15 5E-06 56.0 5.1 36 243-279 157-192 (418)
57 2bdt_A BH3686; alpha-beta prot 91.6 0.11 3.8E-06 49.2 3.6 23 254-276 2-24 (189)
58 1d2n_A N-ethylmaleimide-sensit 91.5 0.21 7.3E-06 50.2 5.9 28 251-278 61-88 (272)
59 3ney_A 55 kDa erythrocyte memb 91.5 0.11 3.7E-06 51.4 3.5 27 253-279 18-44 (197)
60 1l8q_A Chromosomal replication 91.5 0.15 5E-06 52.7 4.7 45 235-281 18-64 (324)
61 3jvv_A Twitching mobility prot 91.5 0.16 5.4E-06 54.5 5.1 37 244-281 114-150 (356)
62 1kag_A SKI, shikimate kinase I 91.4 0.096 3.3E-06 48.6 2.9 25 254-278 4-28 (173)
63 3e70_C DPA, signal recognition 91.2 0.17 5.7E-06 53.7 4.9 33 251-283 126-158 (328)
64 3trf_A Shikimate kinase, SK; a 91.2 0.13 4.4E-06 48.4 3.6 25 254-278 5-29 (185)
65 3lw7_A Adenylate kinase relate 91.2 0.098 3.3E-06 47.7 2.7 19 256-274 3-21 (179)
66 3aez_A Pantothenate kinase; tr 91.1 0.17 5.8E-06 53.1 4.8 29 251-279 87-115 (312)
67 4gp7_A Metallophosphoesterase; 91.1 0.15 5E-06 48.2 3.9 21 253-273 8-28 (171)
68 3cm0_A Adenylate kinase; ATP-b 91.1 0.15 5.3E-06 47.7 4.1 26 253-278 3-28 (186)
69 1sq5_A Pantothenate kinase; P- 91.1 0.2 6.9E-06 52.0 5.3 28 252-279 78-105 (308)
70 2yvu_A Probable adenylyl-sulfa 91.0 0.19 6.6E-06 47.4 4.7 29 253-281 12-40 (186)
71 1e6c_A Shikimate kinase; phosp 91.0 0.13 4.5E-06 47.5 3.4 23 256-278 4-26 (173)
72 3tqf_A HPR(Ser) kinase; transf 91.0 0.11 3.9E-06 50.8 3.0 24 253-276 15-38 (181)
73 1cke_A CK, MSSA, protein (cyti 91.0 0.13 4.5E-06 49.8 3.6 25 254-278 5-29 (227)
74 2jaq_A Deoxyguanosine kinase; 91.0 0.13 4.4E-06 48.7 3.4 23 256-278 2-24 (205)
75 1fnn_A CDC6P, cell division co 90.9 0.2 7E-06 52.1 5.2 38 243-280 31-70 (389)
76 1xjc_A MOBB protein homolog; s 90.9 0.15 5.2E-06 49.1 3.9 28 255-282 5-32 (169)
77 1iqp_A RFCS; clamp loader, ext 90.9 0.21 7.3E-06 50.6 5.2 35 245-279 37-71 (327)
78 1gvn_B Zeta; postsegregational 90.8 0.13 4.6E-06 53.0 3.6 26 253-278 32-57 (287)
79 2qby_B CDC6 homolog 3, cell di 90.8 0.19 6.5E-06 52.5 4.8 39 243-281 34-72 (384)
80 1ofh_A ATP-dependent HSL prote 90.8 0.19 6.6E-06 50.6 4.8 27 252-278 48-74 (310)
81 2pt5_A Shikimate kinase, SK; a 90.8 0.14 4.8E-06 47.2 3.4 23 256-278 2-24 (168)
82 2z0h_A DTMP kinase, thymidylat 90.8 0.16 5.4E-06 47.9 3.8 25 257-281 3-27 (197)
83 1gtv_A TMK, thymidylate kinase 90.7 0.057 2E-06 51.8 0.7 25 256-280 2-26 (214)
84 2ewv_A Twitching motility prot 90.7 0.15 5.1E-06 54.8 3.9 31 251-281 133-163 (372)
85 3b9q_A Chloroplast SRP recepto 90.6 0.21 7E-06 52.2 4.8 32 252-283 98-129 (302)
86 3n70_A Transport activator; si 90.5 0.11 3.8E-06 47.6 2.4 25 252-276 22-46 (145)
87 2iyv_A Shikimate kinase, SK; t 90.4 0.16 5.3E-06 47.8 3.4 23 256-278 4-26 (184)
88 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.19 6.7E-06 48.1 4.1 31 253-283 22-52 (235)
89 1via_A Shikimate kinase; struc 90.4 0.16 5.4E-06 47.5 3.4 23 256-278 6-28 (175)
90 1ly1_A Polynucleotide kinase; 90.3 0.17 5.9E-06 46.8 3.6 23 254-276 2-24 (181)
91 3cr8_A Sulfate adenylyltranfer 90.2 0.23 7.7E-06 56.4 5.1 29 252-280 367-395 (552)
92 1rj9_A FTSY, signal recognitio 90.1 0.2 6.9E-06 52.4 4.2 30 253-282 101-130 (304)
93 2jeo_A Uridine-cytidine kinase 90.0 0.21 7E-06 49.8 4.0 27 252-278 23-49 (245)
94 1qf9_A UMP/CMP kinase, protein 89.9 0.17 5.8E-06 47.3 3.2 25 254-278 6-30 (194)
95 3lnc_A Guanylate kinase, GMP k 89.9 0.12 3.9E-06 50.9 2.1 26 253-278 26-52 (231)
96 3ake_A Cytidylate kinase; CMP 89.8 0.19 6.3E-06 47.9 3.4 23 256-278 4-26 (208)
97 4a74_A DNA repair and recombin 89.8 0.16 5.5E-06 48.9 3.0 26 253-278 24-49 (231)
98 2qz4_A Paraplegin; AAA+, SPG7, 89.7 0.21 7.3E-06 49.2 3.9 27 252-278 37-63 (262)
99 1lv7_A FTSH; alpha/beta domain 89.7 0.21 7.1E-06 49.7 3.8 26 253-278 44-69 (257)
100 2plr_A DTMP kinase, probable t 89.7 0.19 6.6E-06 47.7 3.4 26 254-279 4-29 (213)
101 2pbr_A DTMP kinase, thymidylat 89.6 0.19 6.6E-06 47.0 3.3 25 256-280 2-26 (195)
102 2ehv_A Hypothetical protein PH 89.6 0.25 8.4E-06 48.3 4.2 27 253-279 29-55 (251)
103 3fb4_A Adenylate kinase; psych 89.6 0.19 6.6E-06 48.4 3.4 22 257-278 3-24 (216)
104 2bwj_A Adenylate kinase 5; pho 89.5 0.18 6.1E-06 47.6 3.0 25 254-278 12-36 (199)
105 1uf9_A TT1252 protein; P-loop, 89.5 0.2 6.9E-06 47.4 3.4 26 252-277 6-31 (203)
106 1zd8_A GTP:AMP phosphotransfer 89.5 0.15 5.1E-06 50.0 2.5 27 252-278 5-31 (227)
107 2v9p_A Replication protein E1; 89.5 0.2 6.7E-06 52.8 3.6 36 243-278 114-150 (305)
108 4e22_A Cytidylate kinase; P-lo 89.5 0.18 6.3E-06 50.7 3.2 27 252-278 25-51 (252)
109 1tev_A UMP-CMP kinase; ploop, 89.4 0.25 8.5E-06 46.2 3.9 25 254-278 3-27 (196)
110 2qt1_A Nicotinamide riboside k 89.4 0.13 4.5E-06 49.5 2.0 25 253-277 20-44 (207)
111 3te6_A Regulatory protein SIR3 89.3 0.22 7.7E-06 52.6 3.9 38 244-281 35-72 (318)
112 2c95_A Adenylate kinase 1; tra 89.3 0.21 7.3E-06 46.9 3.4 25 254-278 9-33 (196)
113 3syl_A Protein CBBX; photosynt 89.2 0.35 1.2E-05 49.1 5.2 31 251-281 64-94 (309)
114 2qby_A CDC6 homolog 1, cell di 89.1 0.13 4.4E-06 53.2 1.9 31 251-281 42-72 (386)
115 2og2_A Putative signal recogni 89.1 0.3 1E-05 52.5 4.8 30 253-282 156-185 (359)
116 2gza_A Type IV secretion syste 89.1 0.093 3.2E-06 56.1 0.7 27 253-279 174-200 (361)
117 3tlx_A Adenylate kinase 2; str 89.1 0.51 1.8E-05 47.1 6.2 27 252-278 27-53 (243)
118 2wwf_A Thymidilate kinase, put 89.0 0.2 6.8E-06 47.9 3.0 27 254-280 10-36 (212)
119 4fcw_A Chaperone protein CLPB; 89.0 0.26 9E-06 50.0 4.0 26 254-279 47-72 (311)
120 1svm_A Large T antigen; AAA+ f 89.0 0.42 1.4E-05 51.7 5.8 44 235-278 149-193 (377)
121 2vli_A Antibiotic resistance p 88.9 0.16 5.4E-06 47.4 2.1 25 254-278 5-29 (183)
122 2cdn_A Adenylate kinase; phosp 88.9 0.26 8.8E-06 47.2 3.7 28 251-278 17-44 (201)
123 1vma_A Cell division protein F 88.9 0.34 1.2E-05 50.8 4.8 46 237-282 79-132 (306)
124 2i3b_A HCR-ntpase, human cance 88.8 0.23 8E-06 48.3 3.3 25 255-279 2-26 (189)
125 3tif_A Uncharacterized ABC tra 88.8 0.2 6.9E-06 50.2 3.0 25 252-276 29-53 (235)
126 2v1u_A Cell division control p 88.8 0.15 5E-06 53.0 2.0 30 251-280 41-70 (387)
127 3dl0_A Adenylate kinase; phosp 88.5 0.2 7E-06 48.3 2.7 22 257-278 3-24 (216)
128 2z4s_A Chromosomal replication 88.4 0.38 1.3E-05 52.7 5.1 41 241-281 116-157 (440)
129 2p5t_B PEZT; postsegregational 88.4 0.18 6E-06 50.7 2.2 27 252-278 30-56 (253)
130 2vp4_A Deoxynucleoside kinase; 88.4 0.15 5.1E-06 50.4 1.7 26 252-277 18-43 (230)
131 1nn5_A Similar to deoxythymidy 88.4 0.27 9.1E-06 47.0 3.4 28 253-280 8-35 (215)
132 1zak_A Adenylate kinase; ATP:A 88.4 0.23 7.9E-06 48.4 3.0 25 255-279 6-30 (222)
133 3a4m_A L-seryl-tRNA(SEC) kinas 88.3 0.3 1E-05 49.3 3.9 29 254-282 4-32 (260)
134 2bjv_A PSP operon transcriptio 88.2 0.31 1E-05 48.7 3.8 27 252-278 27-53 (265)
135 2yhs_A FTSY, cell division pro 88.0 0.37 1.3E-05 54.1 4.7 49 235-283 265-322 (503)
136 1nij_A Hypothetical protein YJ 88.0 0.24 8.1E-06 51.8 3.0 24 254-277 4-27 (318)
137 3nwj_A ATSK2; P loop, shikimat 88.0 0.24 8.1E-06 50.5 2.9 25 254-278 48-72 (250)
138 1sxj_C Activator 1 40 kDa subu 88.0 0.42 1.4E-05 49.8 4.8 35 245-279 37-71 (340)
139 1zu4_A FTSY; GTPase, signal re 87.9 0.42 1.4E-05 50.3 4.8 31 253-283 104-134 (320)
140 1ixz_A ATP-dependent metallopr 87.9 0.25 8.7E-06 49.0 3.0 25 254-278 49-73 (254)
141 3uk6_A RUVB-like 2; hexameric 87.8 0.43 1.5E-05 49.7 4.8 26 254-279 70-95 (368)
142 1y63_A LMAJ004144AAA protein; 87.8 0.31 1.1E-05 46.2 3.4 25 253-277 9-33 (184)
143 1sxj_E Activator 1 40 kDa subu 87.8 0.24 8.3E-06 51.3 2.9 24 256-279 38-61 (354)
144 3b9p_A CG5977-PA, isoform A; A 87.7 0.27 9.1E-06 49.9 3.1 26 253-278 53-78 (297)
145 2v54_A DTMP kinase, thymidylat 87.7 0.21 7.3E-06 47.4 2.2 25 254-278 4-28 (204)
146 1ukz_A Uridylate kinase; trans 87.6 0.32 1.1E-05 46.4 3.4 26 253-278 14-39 (203)
147 2gks_A Bifunctional SAT/APS ki 87.6 0.51 1.7E-05 53.4 5.6 48 233-280 347-398 (546)
148 1jr3_A DNA polymerase III subu 87.6 0.59 2E-05 48.5 5.7 30 251-280 35-64 (373)
149 2chq_A Replication factor C sm 87.5 0.32 1.1E-05 49.1 3.5 34 246-279 30-63 (319)
150 1sxj_D Activator 1 41 kDa subu 87.5 0.37 1.3E-05 49.6 4.1 36 245-280 49-84 (353)
151 3pvs_A Replication-associated 87.5 0.37 1.3E-05 53.1 4.2 36 243-278 39-74 (447)
152 1r6b_X CLPA protein; AAA+, N-t 87.4 0.82 2.8E-05 53.1 7.3 66 214-280 167-233 (758)
153 1a7j_A Phosphoribulokinase; tr 87.4 0.23 7.7E-06 51.5 2.3 26 254-279 5-30 (290)
154 3b85_A Phosphate starvation-in 87.4 0.43 1.5E-05 47.0 4.3 32 243-277 14-45 (208)
155 2ze6_A Isopentenyl transferase 87.3 0.32 1.1E-05 49.0 3.4 23 256-278 3-25 (253)
156 3co5_A Putative two-component 87.2 0.13 4.4E-06 47.1 0.3 24 252-275 25-48 (143)
157 1m8p_A Sulfate adenylyltransfe 87.1 0.41 1.4E-05 54.5 4.4 47 234-280 372-422 (573)
158 2if2_A Dephospho-COA kinase; a 87.0 0.26 8.8E-06 47.1 2.4 21 256-276 3-23 (204)
159 1mv5_A LMRA, multidrug resista 87.0 0.34 1.2E-05 48.7 3.3 27 252-278 26-52 (243)
160 1vht_A Dephospho-COA kinase; s 87.0 0.29 9.9E-06 47.4 2.7 23 254-276 4-26 (218)
161 3h4m_A Proteasome-activating n 86.9 0.32 1.1E-05 48.8 3.1 27 252-278 49-75 (285)
162 2dr3_A UPF0273 protein PH0284; 86.9 0.42 1.4E-05 46.4 3.9 30 253-282 22-51 (247)
163 2cbz_A Multidrug resistance-as 86.9 0.28 9.5E-06 49.2 2.6 26 252-277 29-54 (237)
164 3llm_A ATP-dependent RNA helic 86.8 0.61 2.1E-05 45.9 5.0 36 237-275 62-97 (235)
165 1e4v_A Adenylate kinase; trans 86.8 0.33 1.1E-05 47.1 3.0 23 256-278 2-24 (214)
166 1hqc_A RUVB; extended AAA-ATPa 86.8 0.51 1.8E-05 48.1 4.6 27 252-278 36-62 (324)
167 2ghi_A Transport protein; mult 86.8 0.28 9.6E-06 50.0 2.6 27 252-278 44-70 (260)
168 2ff7_A Alpha-hemolysin translo 86.7 0.27 9.4E-06 49.7 2.5 25 253-277 34-58 (247)
169 1in4_A RUVB, holliday junction 86.7 0.61 2.1E-05 48.7 5.2 27 252-278 49-75 (334)
170 2onk_A Molybdate/tungstate ABC 86.6 0.35 1.2E-05 48.8 3.2 25 252-277 23-47 (240)
171 3pxg_A Negative regulator of g 86.6 0.99 3.4E-05 49.7 7.1 62 217-280 164-227 (468)
172 2d2e_A SUFC protein; ABC-ATPas 86.5 0.33 1.1E-05 49.0 3.0 25 253-277 28-52 (250)
173 2zu0_C Probable ATP-dependent 86.4 0.36 1.2E-05 49.4 3.2 26 252-277 44-69 (267)
174 1jjv_A Dephospho-COA kinase; P 86.4 0.32 1.1E-05 46.6 2.7 21 256-276 4-24 (206)
175 1g8f_A Sulfate adenylyltransfe 86.4 0.32 1.1E-05 54.7 3.0 45 234-280 377-421 (511)
176 1ko7_A HPR kinase/phosphatase; 86.3 0.35 1.2E-05 51.2 3.1 24 254-277 144-167 (314)
177 3cf0_A Transitional endoplasmi 86.2 0.36 1.2E-05 49.7 3.1 27 252-278 47-73 (301)
178 2oap_1 GSPE-2, type II secreti 86.2 0.17 5.7E-06 56.9 0.6 25 254-278 260-284 (511)
179 1iy2_A ATP-dependent metallopr 86.1 0.37 1.3E-05 48.7 3.1 25 254-278 73-97 (278)
180 2xb4_A Adenylate kinase; ATP-b 86.1 0.42 1.4E-05 46.9 3.4 23 256-278 2-24 (223)
181 1sxj_B Activator 1 37 kDa subu 86.1 0.65 2.2E-05 46.9 4.9 35 245-279 33-67 (323)
182 1b0u_A Histidine permease; ABC 86.0 0.37 1.3E-05 49.2 3.0 25 252-276 30-54 (262)
183 1cr0_A DNA primase/helicase; R 86.0 0.48 1.6E-05 48.2 3.9 29 252-280 33-61 (296)
184 4edh_A DTMP kinase, thymidylat 86.0 0.46 1.6E-05 47.1 3.6 28 254-281 6-33 (213)
185 2ixe_A Antigen peptide transpo 86.0 0.33 1.1E-05 49.8 2.6 27 252-278 43-69 (271)
186 2pcj_A ABC transporter, lipopr 86.0 0.32 1.1E-05 48.3 2.5 24 253-276 29-52 (224)
187 3pfi_A Holliday junction ATP-d 86.0 0.57 1.9E-05 48.3 4.4 28 251-278 52-79 (338)
188 4eaq_A DTMP kinase, thymidylat 85.9 0.54 1.8E-05 46.8 4.1 28 253-280 25-52 (229)
189 3r20_A Cytidylate kinase; stru 85.9 0.43 1.5E-05 48.2 3.4 25 254-278 9-33 (233)
190 2cvh_A DNA repair and recombin 85.9 0.4 1.4E-05 45.9 3.0 25 252-276 18-42 (220)
191 1aky_A Adenylate kinase; ATP:A 85.9 0.49 1.7E-05 45.9 3.7 25 254-278 4-28 (220)
192 1knx_A Probable HPR(Ser) kinas 85.7 0.33 1.1E-05 51.4 2.5 24 253-276 146-169 (312)
193 4g1u_C Hemin import ATP-bindin 85.7 0.37 1.3E-05 49.3 2.8 26 253-278 36-61 (266)
194 1w5s_A Origin recognition comp 85.7 0.75 2.6E-05 48.3 5.3 35 246-280 40-78 (412)
195 2olj_A Amino acid ABC transpor 85.6 0.4 1.4E-05 49.1 3.0 26 252-277 48-73 (263)
196 4ag6_A VIRB4 ATPase, type IV s 85.5 0.4 1.4E-05 51.1 3.1 28 253-280 34-61 (392)
197 3tqc_A Pantothenate kinase; bi 85.5 0.61 2.1E-05 49.3 4.5 27 254-280 92-118 (321)
198 3gfo_A Cobalt import ATP-bindi 85.4 0.37 1.3E-05 49.7 2.7 25 253-277 33-57 (275)
199 1g8p_A Magnesium-chelatase 38 85.4 0.39 1.3E-05 49.4 2.9 26 253-278 44-69 (350)
200 1um8_A ATP-dependent CLP prote 85.4 0.5 1.7E-05 49.9 3.8 26 253-278 71-96 (376)
201 1g6h_A High-affinity branched- 85.3 0.39 1.3E-05 48.7 2.8 25 253-277 32-56 (257)
202 2r62_A Cell division protease 85.3 0.27 9.2E-06 49.0 1.5 26 253-278 43-68 (268)
203 2pze_A Cystic fibrosis transme 85.2 0.37 1.3E-05 48.1 2.5 25 253-277 33-57 (229)
204 2yz2_A Putative ABC transporte 85.1 0.42 1.4E-05 48.8 3.0 25 252-276 31-55 (266)
205 3sop_A Neuronal-specific septi 85.0 0.46 1.6E-05 48.7 3.2 25 256-280 4-28 (270)
206 1uj2_A Uridine-cytidine kinase 85.0 0.51 1.7E-05 47.1 3.4 27 253-279 21-47 (252)
207 2pt7_A CAG-ALFA; ATPase, prote 84.8 0.19 6.5E-06 53.1 0.2 27 253-279 170-196 (330)
208 1vpl_A ABC transporter, ATP-bi 84.8 0.45 1.6E-05 48.4 3.0 25 252-276 39-63 (256)
209 2px0_A Flagellar biosynthesis 84.7 0.52 1.8E-05 49.0 3.4 28 253-280 104-131 (296)
210 1n0w_A DNA repair protein RAD5 84.6 0.47 1.6E-05 46.1 2.9 25 253-277 23-47 (243)
211 3hws_A ATP-dependent CLP prote 84.6 0.57 2E-05 49.3 3.8 26 253-278 50-75 (363)
212 4tmk_A Protein (thymidylate ki 84.6 0.56 1.9E-05 46.5 3.5 27 255-281 4-30 (213)
213 1sgw_A Putative ABC transporte 84.5 0.39 1.3E-05 47.7 2.3 25 253-277 34-58 (214)
214 1ji0_A ABC transporter; ATP bi 84.3 0.47 1.6E-05 47.6 2.8 25 253-277 31-55 (240)
215 1ls1_A Signal recognition part 84.3 0.81 2.8E-05 47.4 4.7 31 253-283 97-127 (295)
216 3u61_B DNA polymerase accessor 84.2 0.94 3.2E-05 46.4 5.1 51 224-278 17-72 (324)
217 1ojl_A Transcriptional regulat 84.1 0.47 1.6E-05 49.2 2.8 27 252-278 23-49 (304)
218 3lv8_A DTMP kinase, thymidylat 84.1 0.59 2E-05 47.2 3.4 29 254-282 27-55 (236)
219 3rlf_A Maltose/maltodextrin im 83.8 0.54 1.8E-05 51.0 3.2 27 252-278 27-53 (381)
220 3nh6_A ATP-binding cassette SU 83.8 0.21 7.2E-06 52.5 -0.1 27 252-278 78-104 (306)
221 2ga8_A Hypothetical 39.9 kDa p 83.7 1.2 4.3E-05 47.8 5.9 41 239-279 6-49 (359)
222 1lw7_A Transcriptional regulat 83.7 0.48 1.7E-05 50.2 2.7 26 254-279 170-195 (365)
223 3v9p_A DTMP kinase, thymidylat 83.6 0.56 1.9E-05 47.1 3.0 28 253-280 24-51 (227)
224 2nq2_C Hypothetical ABC transp 83.5 0.52 1.8E-05 47.8 2.8 25 253-277 30-54 (253)
225 2ihy_A ABC transporter, ATP-bi 83.5 0.48 1.6E-05 48.9 2.5 25 253-277 46-70 (279)
226 2hf9_A Probable hydrogenase ni 83.4 1.1 3.8E-05 43.0 5.0 34 246-279 30-63 (226)
227 2qmh_A HPR kinase/phosphorylas 83.4 0.59 2E-05 46.6 3.0 26 253-278 33-58 (205)
228 2qi9_C Vitamin B12 import ATP- 83.4 0.54 1.9E-05 47.7 2.9 25 253-277 25-49 (249)
229 1a5t_A Delta prime, HOLB; zinc 83.4 1.3 4.3E-05 46.3 5.8 31 250-280 20-50 (334)
230 3be4_A Adenylate kinase; malar 83.3 0.6 2.1E-05 45.4 3.0 24 255-278 6-29 (217)
231 3pxi_A Negative regulator of g 83.3 1.6 5.4E-05 50.8 7.1 62 218-280 165-227 (758)
232 2qgz_A Helicase loader, putati 83.3 1.2 4.1E-05 46.3 5.5 26 254-279 152-177 (308)
233 1ak2_A Adenylate kinase isoenz 83.2 0.78 2.7E-05 45.1 3.8 26 253-278 15-40 (233)
234 3kta_A Chromosome segregation 82.9 0.6 2.1E-05 43.6 2.8 24 255-278 27-50 (182)
235 1q3t_A Cytidylate kinase; nucl 82.9 0.8 2.7E-05 45.1 3.8 27 252-278 14-40 (236)
236 1ltq_A Polynucleotide kinase; 82.8 0.73 2.5E-05 46.8 3.6 22 255-276 3-24 (301)
237 2wsm_A Hydrogenase expression/ 82.8 1 3.6E-05 43.1 4.5 28 251-278 27-54 (221)
238 3foz_A TRNA delta(2)-isopenten 82.7 0.7 2.4E-05 48.9 3.5 31 248-278 4-34 (316)
239 3ld9_A DTMP kinase, thymidylat 82.7 1 3.4E-05 45.2 4.4 30 251-280 18-47 (223)
240 2pjz_A Hypothetical protein ST 82.5 0.56 1.9E-05 48.0 2.6 24 254-277 30-53 (263)
241 2h92_A Cytidylate kinase; ross 82.3 0.67 2.3E-05 44.7 2.9 25 254-278 3-27 (219)
242 1sxj_A Activator 1 95 kDa subu 82.3 0.8 2.7E-05 51.0 3.9 26 253-278 76-101 (516)
243 3kl4_A SRP54, signal recogniti 82.1 1.7 5.7E-05 47.9 6.3 31 253-283 96-126 (433)
244 3eie_A Vacuolar protein sortin 82.1 0.83 2.8E-05 47.4 3.7 26 253-278 50-75 (322)
245 3d8b_A Fidgetin-like protein 1 82.1 0.68 2.3E-05 48.9 3.1 27 252-278 115-141 (357)
246 3t15_A Ribulose bisphosphate c 82.1 0.75 2.5E-05 47.3 3.3 27 252-278 34-60 (293)
247 3tui_C Methionine import ATP-b 81.9 0.71 2.4E-05 49.8 3.2 25 252-276 52-76 (366)
248 1nlf_A Regulatory protein REPA 81.8 0.74 2.5E-05 46.6 3.2 27 253-279 29-55 (279)
249 3fvq_A Fe(3+) IONS import ATP- 81.8 0.64 2.2E-05 50.0 2.8 26 253-278 29-54 (359)
250 2bbs_A Cystic fibrosis transme 81.7 0.56 1.9E-05 48.7 2.2 26 252-277 62-87 (290)
251 3m6a_A ATP-dependent protease 81.6 0.92 3.1E-05 51.0 4.1 29 250-278 104-132 (543)
252 2yyz_A Sugar ABC transporter, 81.3 0.75 2.6E-05 49.4 3.1 26 252-277 27-52 (359)
253 2ocp_A DGK, deoxyguanosine kin 81.0 0.76 2.6E-05 45.4 2.8 25 254-278 2-26 (241)
254 2it1_A 362AA long hypothetical 81.0 0.8 2.7E-05 49.2 3.2 26 252-277 27-52 (362)
255 2x8a_A Nuclear valosin-contain 80.8 0.77 2.6E-05 46.9 2.8 24 255-278 45-68 (274)
256 2qm8_A GTPase/ATPase; G protei 80.7 1.4 4.9E-05 46.4 5.0 42 242-283 42-84 (337)
257 2grj_A Dephospho-COA kinase; T 80.6 1.3 4.3E-05 43.1 4.2 28 251-278 9-36 (192)
258 3tmk_A Thymidylate kinase; pho 80.5 0.86 2.9E-05 45.4 3.0 25 254-278 5-29 (216)
259 1v43_A Sugar-binding transport 80.4 0.85 2.9E-05 49.2 3.2 26 252-277 35-60 (372)
260 1z47_A CYSA, putative ABC-tran 80.3 0.82 2.8E-05 49.0 3.0 25 253-277 40-64 (355)
261 2ffh_A Protein (FFH); SRP54, s 80.2 1.3 4.3E-05 48.7 4.5 31 253-283 97-127 (425)
262 3d3q_A TRNA delta(2)-isopenten 80.0 0.82 2.8E-05 48.8 2.8 25 255-279 8-32 (340)
263 1j8m_F SRP54, signal recogniti 79.9 1.4 4.8E-05 45.8 4.5 30 254-283 98-127 (297)
264 1xwi_A SKD1 protein; VPS4B, AA 79.8 0.92 3.1E-05 47.3 3.1 26 253-278 44-69 (322)
265 2xk0_A Polycomb protein PCL; t 79.7 10 0.00034 31.5 8.5 49 117-165 17-65 (69)
266 3sr0_A Adenylate kinase; phosp 79.6 1.1 3.7E-05 44.1 3.4 22 257-278 3-24 (206)
267 1g29_1 MALK, maltose transport 79.6 0.89 3.1E-05 49.0 3.0 25 253-277 28-52 (372)
268 2obl_A ESCN; ATPase, hydrolase 79.5 0.95 3.3E-05 48.2 3.1 37 242-278 59-95 (347)
269 3dm5_A SRP54, signal recogniti 79.4 2 6.8E-05 47.5 5.8 30 253-282 99-128 (443)
270 2yv5_A YJEQ protein; hydrolase 79.3 1.3 4.3E-05 46.0 3.9 30 246-275 157-186 (302)
271 2zts_A Putative uncharacterize 79.2 1.5 5.1E-05 42.5 4.2 27 253-279 29-55 (251)
272 3gd7_A Fusion complex of cysti 79.2 0.87 3E-05 49.4 2.8 27 252-278 45-71 (390)
273 2qp9_X Vacuolar protein sortin 79.1 1 3.4E-05 47.7 3.2 25 254-278 84-108 (355)
274 3d31_A Sulfate/molybdate ABC t 79.1 0.7 2.4E-05 49.4 1.9 26 252-277 24-49 (348)
275 3upu_A ATP-dependent DNA helic 79.0 2 6.9E-05 46.9 5.6 29 255-283 46-74 (459)
276 2qen_A Walker-type ATPase; unk 78.9 1.5 5.3E-05 44.5 4.4 23 255-277 32-54 (350)
277 2f6r_A COA synthase, bifunctio 78.8 1.2 4.1E-05 45.6 3.5 23 254-276 75-97 (281)
278 2dpy_A FLII, flagellum-specifi 78.6 1.1 3.8E-05 49.2 3.4 36 243-278 146-181 (438)
279 2npi_A Protein CLP1; CLP1-PCF1 78.6 0.69 2.4E-05 51.2 1.8 32 252-283 136-167 (460)
280 2equ_A PHD finger protein 20-l 78.5 6.1 0.00021 33.1 7.1 55 113-167 7-62 (74)
281 3zvl_A Bifunctional polynucleo 78.5 0.77 2.6E-05 49.8 2.1 27 252-278 256-282 (416)
282 1vec_A ATP-dependent RNA helic 78.4 3.4 0.00012 39.0 6.4 56 212-273 4-59 (206)
283 3b5x_A Lipid A export ATP-bind 78.2 0.82 2.8E-05 51.7 2.3 28 252-279 367-394 (582)
284 3umf_A Adenylate kinase; rossm 77.9 1.3 4.5E-05 44.1 3.4 27 252-278 27-53 (217)
285 3pey_A ATP-dependent RNA helic 77.9 3.1 0.00011 42.8 6.4 62 210-275 4-65 (395)
286 1x6v_B Bifunctional 3'-phospho 77.8 1.6 5.5E-05 50.3 4.6 28 253-280 51-78 (630)
287 3vfd_A Spastin; ATPase, microt 77.7 1.1 3.9E-05 47.5 3.2 25 253-277 147-171 (389)
288 3ice_A Transcription terminati 77.6 2.1 7E-05 47.0 5.1 47 235-281 155-201 (422)
289 3euj_A Chromosome partition pr 77.3 1.4 4.7E-05 49.3 3.7 28 255-282 30-57 (483)
290 3fdi_A Uncharacterized protein 77.1 1.1 3.7E-05 43.7 2.5 24 255-278 7-30 (201)
291 3exa_A TRNA delta(2)-isopenten 77.0 1 3.4E-05 47.9 2.4 24 255-278 4-27 (322)
292 2f9l_A RAB11B, member RAS onco 76.9 1.3 4.6E-05 41.7 3.0 21 256-276 7-27 (199)
293 1qvr_A CLPB protein; coiled co 76.9 1.7 5.7E-05 51.5 4.5 32 249-280 186-217 (854)
294 1oxx_K GLCV, glucose, ABC tran 76.7 0.72 2.4E-05 49.3 1.2 26 252-277 29-54 (353)
295 1pzn_A RAD51, DNA repair and r 76.6 1.2 4.3E-05 47.1 3.0 34 244-277 119-154 (349)
296 3ch4_B Pmkase, phosphomevalona 76.5 1.4 4.7E-05 43.8 3.0 24 255-278 12-35 (202)
297 1tf7_A KAIC; homohexamer, hexa 76.4 1.1 3.6E-05 50.1 2.5 29 252-280 37-66 (525)
298 3k1j_A LON protease, ATP-depen 76.3 0.86 3E-05 51.8 1.8 25 255-279 61-85 (604)
299 3crm_A TRNA delta(2)-isopenten 76.2 1.2 4.1E-05 47.3 2.7 25 254-278 5-29 (323)
300 2fna_A Conserved hypothetical 76.2 2.2 7.7E-05 43.3 4.7 24 255-278 31-54 (357)
301 3b60_A Lipid A export ATP-bind 76.1 0.77 2.6E-05 52.0 1.3 27 252-278 367-393 (582)
302 3hjn_A DTMP kinase, thymidylat 75.9 1.9 6.3E-05 41.9 3.8 26 257-282 3-28 (197)
303 3eph_A TRNA isopentenyltransfe 75.8 1.3 4.5E-05 48.4 3.0 24 256-279 4-27 (409)
304 1oix_A RAS-related protein RAB 75.7 1.3 4.6E-05 41.7 2.7 21 256-276 31-51 (191)
305 2d9t_A Tudor domain-containing 75.5 16 0.00053 30.6 8.9 58 112-169 6-67 (78)
306 3hu3_A Transitional endoplasmi 75.4 1.4 4.6E-05 49.2 3.0 26 252-277 236-261 (489)
307 4hcz_A PHD finger protein 1; p 75.3 11 0.00038 30.2 7.4 50 116-165 4-55 (58)
308 2yl4_A ATP-binding cassette SU 75.0 1.2 4.2E-05 50.4 2.6 27 252-278 368-394 (595)
309 1yqt_A RNAse L inhibitor; ATP- 75.0 1.4 4.8E-05 49.6 3.1 26 253-278 46-71 (538)
310 3hdt_A Putative kinase; struct 74.7 1.6 5.5E-05 43.5 3.0 25 254-278 14-38 (223)
311 3qf4_B Uncharacterized ABC tra 74.6 1.3 4.4E-05 50.3 2.6 27 252-278 379-405 (598)
312 1e9r_A Conjugal transfer prote 74.6 1.5 5.3E-05 47.1 3.1 30 253-282 52-81 (437)
313 2axn_A 6-phosphofructo-2-kinas 74.4 2 6.9E-05 48.1 4.1 30 252-281 33-62 (520)
314 1z2a_A RAS-related protein RAB 74.4 1.8 6E-05 38.8 3.0 21 255-275 6-26 (168)
315 2b8t_A Thymidine kinase; deoxy 74.3 2.5 8.6E-05 42.3 4.4 28 253-280 11-38 (223)
316 1tue_A Replication protein E1; 73.9 1.6 5.4E-05 43.7 2.8 36 243-278 46-82 (212)
317 1mhn_A SurviVal motor neuron p 73.9 14 0.00048 29.0 7.8 50 117-166 5-58 (59)
318 2xau_A PRE-mRNA-splicing facto 73.7 3.2 0.00011 48.8 5.7 60 210-275 71-130 (773)
319 1bif_A 6-phosphofructo-2-kinas 73.6 2.1 7.3E-05 46.9 4.0 30 252-281 37-66 (469)
320 3ber_A Probable ATP-dependent 73.5 4.3 0.00015 40.3 5.9 36 242-280 71-107 (249)
321 2dyk_A GTP-binding protein; GT 73.4 2 6.8E-05 38.3 3.1 20 256-275 3-22 (161)
322 2c9o_A RUVB-like 1; hexameric 73.4 3.4 0.00012 45.1 5.5 26 254-279 63-88 (456)
323 2xxa_A Signal recognition part 73.1 2.6 8.9E-05 46.2 4.5 30 252-281 98-127 (433)
324 2zej_A Dardarin, leucine-rich 72.5 1.7 5.7E-05 40.5 2.4 20 256-275 4-23 (184)
325 2ce2_X GTPase HRAS; signaling 72.3 1.9 6.4E-05 38.2 2.7 20 256-275 5-24 (166)
326 1u8z_A RAS-related protein RAL 72.1 2.2 7.4E-05 38.0 3.0 21 255-275 5-25 (168)
327 4a82_A Cystic fibrosis transme 72.1 0.7 2.4E-05 52.3 -0.3 27 252-278 365-391 (578)
328 3qf4_A ABC transporter, ATP-bi 72.1 0.8 2.7E-05 52.0 0.1 27 252-278 367-393 (587)
329 3ozx_A RNAse L inhibitor; ATP 71.9 2 6.8E-05 48.4 3.3 27 252-278 23-49 (538)
330 1t6n_A Probable ATP-dependent 71.8 9.2 0.00032 36.4 7.6 60 211-276 14-73 (220)
331 2qag_B Septin-6, protein NEDD5 71.7 2 6.8E-05 47.2 3.2 26 252-277 38-65 (427)
332 1qvr_A CLPB protein; coiled co 71.5 2.4 8.3E-05 50.1 4.0 25 255-279 589-613 (854)
333 2ce7_A Cell division protein F 71.4 2.4 8.2E-05 47.2 3.7 26 253-278 48-73 (476)
334 1u0l_A Probable GTPase ENGC; p 71.2 2.1 7.1E-05 44.2 3.0 25 252-276 167-191 (301)
335 2zan_A Vacuolar protein sortin 71.2 1.9 6.5E-05 47.1 2.8 26 253-278 166-191 (444)
336 1tq4_A IIGP1, interferon-induc 71.2 2.1 7.2E-05 46.8 3.2 24 254-277 69-92 (413)
337 3pxi_A Negative regulator of g 71.1 2.3 7.9E-05 49.4 3.7 24 256-279 523-546 (758)
338 3fht_A ATP-dependent RNA helic 70.9 3.8 0.00013 42.5 5.0 65 210-278 24-89 (412)
339 1ek0_A Protein (GTP-binding pr 70.8 2.4 8.2E-05 37.9 3.0 20 256-275 5-24 (170)
340 3j16_B RLI1P; ribosome recycli 70.8 2 6.9E-05 49.2 3.1 27 252-278 101-127 (608)
341 1kao_A RAP2A; GTP-binding prot 70.7 2.5 8.5E-05 37.5 3.1 21 255-275 4-24 (167)
342 2wji_A Ferrous iron transport 70.7 2.3 7.7E-05 38.9 2.9 21 255-275 4-24 (165)
343 2p67_A LAO/AO transport system 70.7 4.9 0.00017 42.2 5.8 42 242-283 43-85 (341)
344 1ry6_A Internal kinesin; kines 70.5 3.3 0.00011 44.5 4.5 36 236-271 66-102 (360)
345 2wjg_A FEOB, ferrous iron tran 70.4 2.3 7.9E-05 39.2 2.9 21 255-275 8-28 (188)
346 1tf7_A KAIC; homohexamer, hexa 70.4 2.4 8.1E-05 47.2 3.4 28 252-279 279-306 (525)
347 1ypw_A Transitional endoplasmi 70.3 2.3 7.8E-05 50.2 3.4 26 252-277 236-261 (806)
348 2r44_A Uncharacterized protein 70.1 2.6 8.9E-05 43.3 3.5 24 255-278 47-70 (331)
349 2ged_A SR-beta, signal recogni 70.1 2.5 8.6E-05 39.2 3.1 21 255-275 49-69 (193)
350 1z08_A RAS-related protein RAB 70.1 2.6 8.8E-05 37.9 3.1 21 255-275 7-27 (170)
351 3e1s_A Exodeoxyribonuclease V, 70.0 3.7 0.00013 46.5 5.0 30 253-282 203-232 (574)
352 2rcn_A Probable GTPase ENGC; Y 70.0 2.3 7.9E-05 45.6 3.1 25 253-277 214-238 (358)
353 3qii_A PHD finger protein 20; 69.9 13 0.00044 32.1 7.1 45 119-166 28-73 (85)
354 1yrb_A ATP(GTP)binding protein 69.9 3.1 0.00011 40.9 3.9 28 252-279 12-39 (262)
355 1z0j_A RAB-22, RAS-related pro 69.8 2.7 9.1E-05 37.7 3.1 21 255-275 7-27 (170)
356 1pui_A ENGB, probable GTP-bind 69.7 1.5 5.1E-05 41.4 1.4 24 252-275 24-47 (210)
357 1c1y_A RAS-related protein RAP 69.7 2.6 9E-05 37.6 3.0 20 256-275 5-24 (167)
358 1w36_D RECD, exodeoxyribonucle 69.7 3.9 0.00013 46.5 5.1 28 254-281 164-191 (608)
359 2fh5_B SR-beta, signal recogni 69.6 2.7 9.1E-05 39.9 3.2 26 250-275 3-28 (214)
360 2gno_A DNA polymerase III, gam 69.5 4 0.00014 42.5 4.7 34 244-277 8-41 (305)
361 3lda_A DNA repair protein RAD5 69.4 2 6.8E-05 46.7 2.5 32 244-275 166-199 (400)
362 3a8t_A Adenylate isopentenyltr 69.4 1.9 6.6E-05 46.0 2.3 26 252-277 38-63 (339)
363 2qnr_A Septin-2, protein NEDD5 69.3 1.9 6.6E-05 44.6 2.3 25 252-276 16-40 (301)
364 1m2o_B GTP-binding protein SAR 69.3 2.4 8.3E-05 39.8 2.8 32 244-275 13-44 (190)
365 2qag_C Septin-7; cell cycle, c 69.3 2.1 7.1E-05 46.8 2.6 25 252-276 29-53 (418)
366 2fn4_A P23, RAS-related protei 69.2 2.4 8.3E-05 38.4 2.7 23 254-276 9-31 (181)
367 1r6b_X CLPA protein; AAA+, N-t 69.1 3 0.0001 48.4 4.0 24 255-278 489-512 (758)
368 1p5z_B DCK, deoxycytidine kina 69.1 1.1 3.8E-05 44.9 0.4 26 253-278 23-48 (263)
369 2erx_A GTP-binding protein DI- 68.8 2.7 9.3E-05 37.6 2.9 21 255-275 4-24 (172)
370 3p32_A Probable GTPase RV1496/ 68.7 6.2 0.00021 41.5 6.1 44 239-282 63-107 (355)
371 3hr8_A Protein RECA; alpha and 68.6 3.4 0.00012 44.3 4.0 30 253-282 60-89 (356)
372 4hlc_A DTMP kinase, thymidylat 68.6 3 0.0001 40.8 3.4 25 255-279 3-27 (205)
373 1ky3_A GTP-binding protein YPT 68.4 3.7 0.00012 37.2 3.7 23 253-275 7-29 (182)
374 2m0o_A PHD finger protein 1; t 68.3 18 0.00062 30.6 7.4 48 117-164 28-77 (79)
375 2dhr_A FTSH; AAA+ protein, hex 68.3 2.4 8.1E-05 47.5 2.9 24 255-278 65-88 (499)
376 3bh0_A DNAB-like replicative h 68.2 3.4 0.00012 42.9 3.9 27 252-278 66-92 (315)
377 2gf0_A GTP-binding protein DI- 68.0 3.4 0.00012 38.3 3.5 29 248-276 2-30 (199)
378 2a9k_A RAS-related protein RAL 67.8 3 0.0001 37.9 3.0 21 255-275 19-39 (187)
379 2fz4_A DNA repair protein RAD2 67.7 3.1 0.00011 41.2 3.3 34 242-278 99-132 (237)
380 1z0f_A RAB14, member RAS oncog 67.7 3 0.0001 37.6 3.0 21 255-275 16-36 (179)
381 3bk7_A ABC transporter ATP-bin 67.7 2.5 8.4E-05 48.4 2.9 27 252-278 115-141 (607)
382 2zr9_A Protein RECA, recombina 67.4 3.4 0.00012 43.8 3.7 30 253-282 60-89 (349)
383 1q0u_A Bstdead; DEAD protein, 67.4 5.3 0.00018 38.3 4.9 56 212-273 5-60 (219)
384 2gj8_A MNME, tRNA modification 67.4 3 0.0001 38.5 3.0 23 253-275 3-25 (172)
385 1g16_A RAS-related protein SEC 67.4 2.8 9.5E-05 37.6 2.7 20 256-275 5-24 (170)
386 3clv_A RAB5 protein, putative; 67.3 3.1 0.00011 38.1 3.1 22 255-276 8-29 (208)
387 1r2q_A RAS-related protein RAB 67.3 3.2 0.00011 37.1 3.0 21 255-275 7-27 (170)
388 1upt_A ARL1, ADP-ribosylation 67.3 3.2 0.00011 37.3 3.0 21 254-274 7-27 (171)
389 2v3c_C SRP54, signal recogniti 67.1 3 0.0001 45.7 3.4 29 254-282 99-127 (432)
390 2lkc_A Translation initiation 67.1 3.1 0.00011 37.7 2.9 23 253-275 7-29 (178)
391 2nzj_A GTP-binding protein REM 67.0 3.1 0.00011 37.5 2.9 21 255-275 5-25 (175)
392 4dsu_A GTPase KRAS, isoform 2B 67.0 3.2 0.00011 37.9 3.1 20 256-275 6-25 (189)
393 1nrj_B SR-beta, signal recogni 66.9 3.1 0.00011 39.5 3.0 24 253-276 11-34 (218)
394 1r8s_A ADP-ribosylation factor 66.8 3.3 0.00011 37.0 3.0 19 257-275 3-21 (164)
395 3bc1_A RAS-related protein RAB 66.8 3.2 0.00011 37.9 3.0 21 255-275 12-32 (195)
396 1g5v_A SurviVal motor neuron p 66.6 20 0.00068 30.9 7.7 53 117-169 12-68 (88)
397 3con_A GTPase NRAS; structural 66.4 3.3 0.00011 38.3 3.0 21 255-275 22-42 (190)
398 2www_A Methylmalonic aciduria 66.3 6.2 0.00021 41.7 5.5 29 254-282 74-102 (349)
399 3gbj_A KIF13B protein; kinesin 66.3 4.9 0.00017 43.0 4.7 21 251-271 90-110 (354)
400 3eiq_A Eukaryotic initiation f 65.9 8.3 0.00028 40.1 6.4 34 242-278 68-102 (414)
401 1v5w_A DMC1, meiotic recombina 65.9 3.6 0.00012 43.2 3.6 25 252-276 120-144 (343)
402 3kkq_A RAS-related protein M-R 65.9 3.4 0.00012 37.8 3.0 21 255-275 19-39 (183)
403 3pqc_A Probable GTP-binding pr 65.9 2.7 9.1E-05 38.7 2.3 20 256-275 25-44 (195)
404 3ozx_A RNAse L inhibitor; ATP 65.9 2.5 8.7E-05 47.6 2.5 26 253-278 293-318 (538)
405 3thx_A DNA mismatch repair pro 65.8 3.9 0.00013 49.2 4.2 30 253-282 661-692 (934)
406 3b6e_A Interferon-induced heli 65.7 2.9 9.9E-05 39.4 2.5 35 242-279 39-73 (216)
407 3p8d_A Medulloblastoma antigen 65.6 20 0.00069 29.5 7.2 40 127-166 18-58 (67)
408 2g6b_A RAS-related protein RAB 65.6 3.5 0.00012 37.4 3.0 21 255-275 11-31 (180)
409 2efe_B Small GTP-binding prote 65.6 3.6 0.00012 37.4 3.1 22 254-275 12-33 (181)
410 3ihw_A Centg3; RAS, centaurin, 65.6 3.5 0.00012 38.5 3.1 24 252-275 18-41 (184)
411 3lxx_A GTPase IMAP family memb 65.4 3.2 0.00011 40.6 2.9 22 254-275 29-50 (239)
412 2orw_A Thymidine kinase; TMTK, 65.4 4.3 0.00015 38.8 3.7 25 254-278 3-27 (184)
413 2r6a_A DNAB helicase, replicat 65.4 3.9 0.00013 44.6 3.9 28 253-280 202-229 (454)
414 1wms_A RAB-9, RAB9, RAS-relate 65.4 3.2 0.00011 37.6 2.7 21 255-275 8-28 (177)
415 2j37_W Signal recognition part 65.4 7.2 0.00025 43.7 6.0 30 253-282 100-129 (504)
416 2bme_A RAB4A, RAS-related prot 65.1 3.2 0.00011 38.0 2.7 21 255-275 11-31 (186)
417 4etp_A Kinesin-like protein KA 65.1 5.7 0.00019 43.3 5.0 35 236-271 124-158 (403)
418 2bov_A RAla, RAS-related prote 64.9 3.6 0.00012 38.3 3.0 21 255-275 15-35 (206)
419 3dc4_A Kinesin-like protein NO 64.9 4.9 0.00017 42.9 4.3 21 251-271 92-112 (344)
420 1bg2_A Kinesin; motor protein, 64.8 5.2 0.00018 42.3 4.5 21 251-271 75-95 (325)
421 2y8e_A RAB-protein 6, GH09086P 64.6 3.3 0.00011 37.3 2.7 21 255-275 15-35 (179)
422 2gxq_A Heat resistant RNA depe 64.5 4.9 0.00017 37.8 3.9 53 221-278 10-63 (207)
423 3q85_A GTP-binding protein REM 64.4 3.7 0.00012 36.9 2.9 20 256-275 4-23 (169)
424 3ux8_A Excinuclease ABC, A sub 64.3 2 6.9E-05 49.3 1.3 23 253-275 347-369 (670)
425 2zj8_A DNA helicase, putative 64.3 4.6 0.00016 46.5 4.3 62 213-279 3-65 (720)
426 2r2a_A Uncharacterized protein 64.0 3.8 0.00013 40.0 3.1 19 256-274 7-25 (199)
427 1z06_A RAS-related protein RAB 63.9 4 0.00014 37.8 3.1 22 254-275 20-41 (189)
428 1s2m_A Putative ATP-dependent 63.9 10 0.00036 39.3 6.6 59 211-275 21-79 (400)
429 1svi_A GTP-binding protein YSX 63.7 3.1 0.00011 38.5 2.3 22 254-275 23-44 (195)
430 3tkl_A RAS-related protein RAB 63.7 4 0.00014 37.7 3.0 20 256-275 18-37 (196)
431 2oil_A CATX-8, RAS-related pro 63.7 4 0.00014 37.9 3.0 20 256-275 27-46 (193)
432 4a14_A Kinesin, kinesin-like p 63.7 5.6 0.00019 42.3 4.5 35 236-271 66-101 (344)
433 1mh1_A RAC1; GTP-binding, GTPa 63.5 4.1 0.00014 37.1 3.0 21 255-275 6-26 (186)
434 3fmp_B ATP-dependent RNA helic 63.4 6.2 0.00021 42.6 4.9 58 211-272 92-149 (479)
435 3nwn_A Kinesin-like protein KI 63.4 5.1 0.00017 43.0 4.1 21 251-271 102-122 (359)
436 3l0o_A Transcription terminati 63.4 6.9 0.00024 42.9 5.2 58 208-280 144-201 (427)
437 3q72_A GTP-binding protein RAD 63.3 3.3 0.00011 37.1 2.3 19 256-274 4-22 (166)
438 2cxx_A Probable GTP-binding pr 63.2 3.2 0.00011 38.1 2.3 20 256-275 3-22 (190)
439 4a4f_A SurviVal of motor neuro 63.0 34 0.0012 27.3 8.1 50 116-165 9-62 (64)
440 4f4c_A Multidrug resistance pr 63.0 1.7 5.9E-05 54.0 0.5 27 252-278 1103-1129(1321)
441 3bwd_D RAC-like GTP-binding pr 63.0 4.2 0.00014 36.9 3.0 21 255-275 9-29 (182)
442 2a5j_A RAS-related protein RAB 63.0 4.2 0.00014 37.8 3.0 21 255-275 22-42 (191)
443 1vg8_A RAS-related protein RAB 62.9 4.2 0.00014 38.0 3.1 22 254-275 8-29 (207)
444 3tw8_B RAS-related protein RAB 62.8 3.9 0.00013 37.0 2.7 19 256-274 11-29 (181)
445 2wbe_C Bipolar kinesin KRP-130 62.8 6.4 0.00022 42.4 4.8 35 236-271 83-118 (373)
446 2hxs_A RAB-26, RAS-related pro 62.7 4.1 0.00014 36.9 2.9 22 254-275 6-27 (178)
447 3lre_A Kinesin-like protein KI 62.7 5.4 0.00018 42.7 4.2 21 251-271 103-123 (355)
448 2y65_A Kinesin, kinesin heavy 62.6 5.9 0.0002 42.6 4.5 21 251-271 82-102 (365)
449 3of5_A Dethiobiotin synthetase 62.4 5.3 0.00018 39.7 3.8 28 255-282 5-33 (228)
450 2owm_A Nckin3-434, related to 62.4 6.9 0.00023 43.2 5.0 22 250-271 133-154 (443)
451 2xtp_A GTPase IMAP family memb 62.3 3.5 0.00012 40.8 2.5 22 254-275 22-43 (260)
452 1qde_A EIF4A, translation init 62.2 6.9 0.00024 37.4 4.5 34 242-278 42-76 (224)
453 1u94_A RECA protein, recombina 62.1 5.5 0.00019 42.5 4.1 30 253-282 62-91 (356)
454 1x88_A Kinesin-like protein KI 62.0 6.8 0.00023 42.0 4.8 35 236-271 71-106 (359)
455 3fdr_A Tudor and KH domain-con 61.9 18 0.00062 30.8 6.7 54 113-166 25-81 (94)
456 1u0j_A DNA replication protein 61.7 9.1 0.00031 39.4 5.5 38 241-278 89-128 (267)
457 3szr_A Interferon-induced GTP- 61.7 3.3 0.00011 47.2 2.4 22 257-278 48-69 (608)
458 3fe2_A Probable ATP-dependent 61.6 13 0.00045 36.2 6.6 64 210-279 28-92 (242)
459 1goj_A Kinesin, kinesin heavy 61.6 6.1 0.00021 42.3 4.3 36 235-271 62-98 (355)
460 1x3s_A RAS-related protein RAB 61.5 4.6 0.00016 37.1 3.0 21 255-275 16-36 (195)
461 2nr8_A Kinesin-like protein KI 61.4 5.8 0.0002 42.5 4.1 21 251-271 101-121 (358)
462 2va8_A SSO2462, SKI2-type heli 61.4 5.8 0.0002 45.4 4.5 63 213-280 10-73 (715)
463 2zfi_A Kinesin-like protein KI 61.3 6.5 0.00022 42.2 4.5 21 251-271 87-107 (366)
464 2gf9_A RAS-related protein RAB 61.2 4.7 0.00016 37.3 3.0 20 256-275 24-43 (189)
465 1yqt_A RNAse L inhibitor; ATP- 61.2 3.7 0.00012 46.2 2.7 26 253-278 311-336 (538)
466 3end_A Light-independent proto 61.0 6.6 0.00023 39.9 4.4 34 249-282 36-69 (307)
467 3j16_B RLI1P; ribosome recycli 60.9 4.3 0.00015 46.5 3.2 24 255-278 379-402 (608)
468 1m7b_A RND3/RHOE small GTP-bin 60.9 4.2 0.00014 37.5 2.7 21 255-275 8-28 (184)
469 2p5s_A RAS and EF-hand domain 60.8 4.8 0.00016 37.8 3.0 23 253-275 27-49 (199)
470 3cio_A ETK, tyrosine-protein k 60.8 8.2 0.00028 39.8 5.0 44 239-282 82-133 (299)
471 2z43_A DNA repair and recombin 60.7 3.7 0.00013 42.6 2.5 25 253-277 106-130 (324)
472 3bk7_A ABC transporter ATP-bin 60.7 3.7 0.00013 46.9 2.7 26 253-278 381-406 (607)
473 1qhl_A Protein (cell division 60.6 2.2 7.4E-05 42.8 0.6 23 257-279 30-52 (227)
474 1zj6_A ADP-ribosylation factor 60.6 8.8 0.0003 35.4 4.8 25 251-275 13-37 (187)
475 1wb9_A DNA mismatch repair pro 60.3 4.4 0.00015 47.9 3.2 25 252-276 605-629 (800)
476 2i1q_A DNA repair and recombin 60.3 4.4 0.00015 41.8 2.9 33 244-276 86-120 (322)
477 1e69_A Chromosome segregation 60.3 4.1 0.00014 42.3 2.6 19 256-274 26-44 (322)
478 3t0q_A AGR253WP; kinesin, alph 60.1 6.6 0.00023 41.9 4.3 22 250-271 82-103 (349)
479 4f4c_A Multidrug resistance pr 60.1 2.3 7.8E-05 53.0 0.8 28 252-279 442-469 (1321)
480 1zbd_A Rabphilin-3A; G protein 60.0 4.7 0.00016 37.7 2.9 19 256-274 10-28 (203)
481 3qf7_A RAD50; ABC-ATPase, ATPa 60.0 4.2 0.00014 43.3 2.7 20 256-275 25-44 (365)
482 3u06_A Protein claret segregat 60.0 5.9 0.0002 43.3 4.0 21 251-271 136-156 (412)
483 1f6b_A SAR1; gtpases, N-termin 59.7 5.4 0.00018 37.7 3.2 31 244-274 15-45 (198)
484 3bor_A Human initiation factor 59.7 8.3 0.00028 37.6 4.7 27 243-272 59-85 (237)
485 3t1o_A Gliding protein MGLA; G 59.7 5.2 0.00018 36.7 3.0 19 254-272 14-32 (198)
486 3bfv_A CAPA1, CAPB2, membrane 59.7 12 0.0004 38.0 5.9 44 239-282 60-111 (271)
487 3c5c_A RAS-like protein 12; GD 59.7 5.2 0.00018 37.3 3.1 24 252-275 19-42 (187)
488 3t5g_A GTP-binding protein RHE 59.7 4.6 0.00016 36.8 2.7 21 255-275 7-27 (181)
489 1t5c_A CENP-E protein, centrom 59.7 5.6 0.00019 42.5 3.6 21 251-271 75-95 (349)
490 1c9k_A COBU, adenosylcobinamid 59.6 4.3 0.00015 39.4 2.5 19 257-275 2-20 (180)
491 2fg5_A RAB-22B, RAS-related pr 59.4 4.7 0.00016 37.6 2.7 22 254-275 23-44 (192)
492 3nbx_X ATPase RAVA; AAA+ ATPas 59.4 7.2 0.00025 43.6 4.6 33 395-427 209-241 (500)
493 1zd9_A ADP-ribosylation factor 59.3 5.3 0.00018 37.1 3.0 24 252-275 20-43 (188)
494 3g5u_A MCG1178, multidrug resi 59.0 2.4 8.1E-05 52.7 0.7 28 252-279 414-441 (1284)
495 1ksh_A ARF-like protein 2; sma 58.9 5.2 0.00018 36.7 2.9 24 252-275 16-39 (186)
496 2h58_A Kinesin-like protein KI 58.6 6.6 0.00023 41.6 4.0 21 251-271 78-98 (330)
497 2vvg_A Kinesin-2; motor protei 58.6 6.7 0.00023 41.9 4.0 21 251-271 87-107 (350)
498 1ewq_A DNA mismatch repair pro 58.5 4.7 0.00016 47.5 3.0 24 254-277 576-599 (765)
499 1sky_E F1-ATPase, F1-ATP synth 58.4 6.1 0.00021 44.0 3.8 43 238-280 135-177 (473)
500 1fzq_A ADP-ribosylation factor 58.3 4.4 0.00015 37.5 2.3 21 254-274 16-36 (181)
No 1
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.7e-171 Score=1486.69 Aligned_cols=595 Identities=36% Similarity=0.601 Sum_probs=556.8
Q ss_pred CCCCccccCCCCCcccCCccccccccccccccccCcEEEEecCCCCEEEEEEEeeeCCeeEEEcCCCcEEEEecCCcccC
Q 005424 85 GDEDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSA 164 (697)
Q Consensus 85 ~~~~~~~~~~p~~~l~~~~~e~~~~q~~~~~~k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~~~g~~~~v~~~~l~~~ 164 (697)
+|.++....+|+||||+++++++.+|+.||+.++ +|||||++++|++|+|++.++++++|++++|++++|+.++++++
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~ 79 (783)
T 4db1_A 2 GDSEMAVFGAAAPYLRKSEKERLEAQTRPFDLKK--DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQ 79 (783)
T ss_dssp TTGGGGGGGGGGGGTCCCHHHHHHHHHSCCCTTT--EEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEEC
T ss_pred CCcchhhcCchhhHhccCHHHHHHhhccCCcCCC--EEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccC
Confidence 4677888899999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred CCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHH
Q 005424 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (697)
Q Consensus 165 np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~ 242 (697)
||+.++++|||+.|++|||++|||||+.||.+++||||+|++||+||||+++|+|++++++.|+++.+. ||||||||+
T Consensus 80 np~~~~~~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~ 159 (783)
T 4db1_A 80 NPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISD 159 (783)
T ss_dssp CCGGGTTCSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHH
T ss_pred CCCccCCcchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC------------CCchhhhhhhchHHHhhccccccCCC
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG------------SGIEYEILKTNPILEAFGNAKTSRND 310 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~------------~~ie~~Il~snpILEAFGNAKT~rNd 310 (697)
+||++|+++++||||||||||||||||++|+||+|||.++++ +.++++|+++||||||||||||+|||
T Consensus 160 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNd 239 (783)
T 4db1_A 160 NAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRND 239 (783)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCT
T ss_pred HHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCC
Confidence 999999999999999999999999999999999999998753 36899999999999999999999999
Q ss_pred CCCccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCC-CCcccCccccCCCcc
Q 005424 311 NSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCY 389 (697)
Q Consensus 311 NSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L-~~~~~y~yL~qs~~~ 389 (697)
|||||||||+|+|+.+|+|+||+|++|||||||||+|++||||||||||||+|+++++|++|+| .++.+|+||+++ +.
T Consensus 240 NSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g-~~ 318 (783)
T 4db1_A 240 NSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQG-ET 318 (783)
T ss_dssp TEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSS-CC
T ss_pred CCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCC-Cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 579999999997 57
Q ss_pred ccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHh
Q 005424 390 SINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLA 469 (697)
Q Consensus 390 ~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~a 469 (697)
.++++||+++|+.+++||++|||+++|+..||+|||||||||||+|...++++++++.+.+.++.+|+||||++++|.++
T Consensus 319 ~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~a 398 (783)
T 4db1_A 319 TVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKG 398 (783)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHh
Confidence 88999999999999999999999999999999999999999999999887778899999999999999999999999999
Q ss_pred hcceeeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHH
Q 005424 470 LSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFC 549 (697)
Q Consensus 470 Lt~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLc 549 (697)
||+|++++|+|.+++++|++||.++||||||+||+|||+|||++||++|.+. .....+||||||||||+|+.|||||||
T Consensus 399 L~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlC 477 (783)
T 4db1_A 399 LCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLC 477 (783)
T ss_dssp HHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHH
T ss_pred hcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999864 345689999999999999999999999
Q ss_pred HhHhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc
Q 005424 550 INYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH 627 (697)
Q Consensus 550 INyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~ 627 (697)
||||||||||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |+|||+||| +|..|++||.+++.++...|
T Consensus 478 INyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~~ 556 (783)
T 4db1_A 478 INFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDNH 556 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999995 99999999997 899999998 58899999999999986554
Q ss_pred -c-cceeeeccC----CCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccccc
Q 005424 628 -A-FGIFIQADL----TGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVM 694 (697)
Q Consensus 628 -~-fg~~~~~~~----~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 694 (697)
+ ...+..+.. ....|.|+|||+. |.|.|.+||+||+|.|.-+.+ ||..|+++||..+
T Consensus 557 ~~~~~~f~~~~~~k~~~~~~F~I~HyAG~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~l 620 (783)
T 4db1_A 557 LGKSANFQKPRNIKGKPEAHFSLIHYAGI----------VDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTL 620 (783)
T ss_dssp TTTCTTEECCCC----C-CCEEEEETTEE----------EEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHH
T ss_pred cCCCCCccCCCCCCCCCCCCeEEeCcCCc----------eEEeCcChhhhccccccHHHHHHHHHCccHHHHHH
Confidence 2 233333332 3678999999999 999999999999999998888 9999999998765
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=4.5e-168 Score=1468.94 Aligned_cols=590 Identities=37% Similarity=0.629 Sum_probs=548.1
Q ss_pred ccCCCC-CcccCCccccccccccccccccCcEEEEecCCCCEEEEEEEeeeCCeeEEEc-CCCcEEEEecCCcccCCCCc
Q 005424 91 SAASPL-PSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDI 168 (697)
Q Consensus 91 ~~~~p~-~~l~~~~~e~~~~q~~~~~~k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~-~~g~~~~v~~~~l~~~np~~ 168 (697)
...+|+ +|||++++|++++|+.||+.++ +|||||++++|++|+|++.++++++|++ ++|++++|+.+++.++||+.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~ 81 (837)
T 1kk8_A 4 DFSDPDFQYLAVDRKKLMKEQTAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPK 81 (837)
T ss_dssp CCSCGGGTTTCCCSSSSCC--CCCCCTTT--EEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGG
T ss_pred ccccchhhhhhcCHHHHHHhhhcccccCC--EEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchh
Confidence 346788 9999999999999999999987 9999999999999999999999999996 47889999999999999999
Q ss_pred cCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHH
Q 005424 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (697)
Q Consensus 169 ~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~ 246 (697)
++++|||+.|++|||++|||||+.||.+++||||+|++||+||||+++|+|+++++..|+++... ||||||||++||+
T Consensus 82 ~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~ 161 (837)
T 1kk8_A 82 FEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQ 161 (837)
T ss_dssp GTTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred hcchhhhhhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998775 8999999999999
Q ss_pred HHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC-------------CCchhhhhhhchHHHhhccccccCCCCCC
Q 005424 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-------------SGIEYEILKTNPILEAFGNAKTSRNDNSS 313 (697)
Q Consensus 247 ~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~-------------~~ie~~Il~snpILEAFGNAKT~rNdNSS 313 (697)
+|+++++||||||||||||||||++|+||+|||.++++ +.|+++|+++||||||||||||+||||||
T Consensus 162 ~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSS 241 (837)
T 1kk8_A 162 NMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSS 241 (837)
T ss_dssp HHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEE
T ss_pred HHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCC
Confidence 99999999999999999999999999999999999753 35899999999999999999999999999
Q ss_pred ccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCC-CCcccCccccCCCccccC
Q 005424 314 RFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSIN 392 (697)
Q Consensus 314 RFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L-~~~~~y~yL~qs~~~~~~ 392 (697)
||||||+|+|+.+|+|+||+|++|||||||||+|++||||||||||||+|+++++|++|+| .++.+|+||+|+. ..++
T Consensus 242 RFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~ 320 (837)
T 1kk8_A 242 RFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVD 320 (837)
T ss_dssp SSEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBT
T ss_pred CceeEEEEEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 7899999999984 7889
Q ss_pred CcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcc
Q 005424 393 GVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALST 472 (697)
Q Consensus 393 ~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~ 472 (697)
++||+++|+.|++||++|||+++|+.+||+|||||||||||+|...++++++++.+.+.++.+|+||||++++|.++||+
T Consensus 321 ~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~ 400 (837)
T 1kk8_A 321 NIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLK 400 (837)
T ss_dssp TBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHS
T ss_pred CcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999877677889999999999999999999999999999
Q ss_pred eeeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhH
Q 005424 473 RKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINY 552 (697)
Q Consensus 473 r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINy 552 (697)
|++++|+|.+++++|++||.++||||||+||+|||+|||++||++|... .....+||||||||||+|+.||||||||||
T Consensus 401 ~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINy 479 (837)
T 1kk8_A 401 PKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINY 479 (837)
T ss_dssp CEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHH
T ss_pred cEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999843 345689999999999999999999999999
Q ss_pred hhHHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc--c
Q 005424 553 ANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH--A 628 (697)
Q Consensus 553 aNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~--~ 628 (697)
|||||||+||+|+|+.||+||++|||+|++|+|. ||++|||||++ |+|||+||| +|..|++||.+++.++...| +
T Consensus 480 aNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~ 558 (837)
T 1kk8_A 480 TNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGK 558 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999995 99999999998 899999998 58899999999999964322 2
Q ss_pred cceeeeccC------CCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 629 FGIFIQADL------TGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 629 fg~~~~~~~------~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
...+..|.. ....|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+.
T Consensus 559 ~~~f~~p~~~~~k~~~~~~F~I~HyAG~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf 622 (837)
T 1kk8_A 559 NRMFTKPGKPTRPNQGPAHFELHHYAGN----------VPYSITGWLEKNKDPINENVVALLGASKEPLVAELF 622 (837)
T ss_dssp CSSEECCCSCSSTTCCCCSEEEEETTEE----------EEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHT
T ss_pred CcCccCCCccccccccCCceEEeeccCc----------ccccHHHHHHhccccccHHHHHHHHhchHHHHHHHh
Confidence 333334433 3788999999999 999999999999999998888 99999999987654
No 3
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.1e-167 Score=1448.99 Aligned_cols=589 Identities=39% Similarity=0.633 Sum_probs=548.9
Q ss_pred CccccCCCCCcccCCccc-cccccccccccccCcEEEEecC---CCCEEEEEEEeeeCCeeEEEcCCCcEEEEecCCccc
Q 005424 88 DLDSAASPLPSVSASHTD-RRWSDTTSYAGKKKLQSWFQLP---NGNWELGKILSISGTESVISLPEGKVLKVKSENLVS 163 (697)
Q Consensus 88 ~~~~~~~p~~~l~~~~~e-~~~~q~~~~~~k~~~~vWv~~~---~~~~~~~~v~s~~~~~v~v~~~~g~~~~v~~~~l~~ 163 (697)
-+.+..+|++|||+++++ ++.+++.+ .+.+|||+++ +++|++|+|++.++++++|+.++|++++|+.+++.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~ 79 (770)
T 1w9i_A 4 IHDRTSDYHKYLKVKQGDSDLFKLTVS----DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQ 79 (770)
T ss_dssp TTCTTSHHHHHHSCCCCC--------------CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEE
T ss_pred hhhhhcchhhhhhcccchhHHhhhhcc----CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccc
Confidence 456678889999999999 89988766 4559999999 899999999999999999998899999999999999
Q ss_pred CCCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHH
Q 005424 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAIT 241 (697)
Q Consensus 164 ~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA 241 (697)
+||+.++++|||+.|++|||++|||||+.||.+++||||+|++||+||||+++|+|++++++.|+++.+. ||||||||
T Consensus 80 ~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA 159 (770)
T 1w9i_A 80 RNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAIS 159 (770)
T ss_dssp CCCGGGTTCSBGGGCSCCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHH
T ss_pred cCcccccchhhhhhhccCCHHHHHHHHHHHHhcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998775 89999999
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC------CchhhhhhhchHHHhhccccccCCCCCCcc
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRF 315 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~------~ie~~Il~snpILEAFGNAKT~rNdNSSRF 315 (697)
++||++|+++++||||||||||||||||++|+||+|||.+++++ .++++|+++||||||||||||+||||||||
T Consensus 160 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRF 239 (770)
T 1w9i_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRF 239 (770)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESS
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCc
Confidence 99999999999999999999999999999999999999997653 599999999999999999999999999999
Q ss_pred ccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCcc-ccCCCccccCCc
Q 005424 316 GKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKY-LRQSSCYSINGV 394 (697)
Q Consensus 316 GKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~y-L~qs~~~~~~~~ 394 (697)
||||+|+|+.+|+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+| |+++ |..++++
T Consensus 240 GKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g-~~~~~~~ 318 (770)
T 1w9i_A 240 GKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSG-CVDIKGV 318 (770)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSS-CCCCTTC
T ss_pred ceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCC-ccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8876 6889999
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhccee
Q 005424 395 DDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRK 474 (697)
Q Consensus 395 dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~ 474 (697)
||+++|+.+++||++|||+++|+..||+|||||||||||+|. .++++++++.+.+.++.+|+||||++++|.++||+|+
T Consensus 319 dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~ 397 (770)
T 1w9i_A 319 SDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPR 397 (770)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCE
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcE
Confidence 999999999999999999999999999999999999999999 5666788999999999999999999999999999999
Q ss_pred eeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhh
Q 005424 475 MRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYAN 554 (697)
Q Consensus 475 i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaN 554 (697)
+++|+|.+++++|++||.++||||||+||+|||+|||++||++|.... . ..+||||||||||+|+.||||||||||||
T Consensus 398 ~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~-~~~IGvLDI~GFE~F~~NsFEQlCINyaN 475 (770)
T 1w9i_A 398 ILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQER-K-AYFIGVLDIYGFEIFKVNSFEQLCINYTN 475 (770)
T ss_dssp EEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSC-C-SEEEEEEECCCCCCCSSCCHHHHHHHHHH
T ss_pred EEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-CCeeeeccCccccccccCCHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999998643 3 78999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhc-CCcceeeecc-cccccCcchhhhhhhhhhhc--cc
Q 005424 555 ERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-VPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH--AF 629 (697)
Q Consensus 555 EkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~-kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~--~f 629 (697)
|||||+||+|+|+.||+||.+|||+|..|+|. ||++|||||++ +|+|||+||| +|..|++||.+++.++...| +.
T Consensus 476 EkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~ 555 (770)
T 1w9i_A 476 EKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKN 555 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999995 99999999998 4999999998 58899999999999964332 23
Q ss_pred ceeeeccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccccc
Q 005424 630 GIFIQADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVM 694 (697)
Q Consensus 630 g~~~~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 694 (697)
..+..|......|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+
T Consensus 556 ~~f~~p~~~~~~F~I~HyAG~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~L 611 (770)
T 1w9i_A 556 AKYEEPRFSKTEFGVTHYAGQ----------VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKL 611 (770)
T ss_dssp TTEECCSSCSSEEEEEETTEE----------EEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHH
T ss_pred CCccCCCCCCCceEeeccCcc----------ccccccChhhhccCcccHHHHHHHHhchHHHHHHH
Confidence 445556555689999999999 999999999999999998888 9999999998765
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.7e-164 Score=1430.67 Aligned_cols=566 Identities=42% Similarity=0.673 Sum_probs=532.6
Q ss_pred cCcEEEEecCCCCEEEEEEEee---eCCeeEEEcCCCcEEEEecC----Cccc-CCCCccCCcCCcccccCCCchhHHHH
Q 005424 118 KKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKSE----NLVS-ANPDILDGVDDLMQLSYLNEPSVLYN 189 (697)
Q Consensus 118 ~~~~vWv~~~~~~~~~~~v~s~---~~~~v~v~~~~g~~~~v~~~----~l~~-~np~~~~~veDL~~L~~LnE~sVL~n 189 (697)
+|.+|||||++++|++|+|++. .+++++|++++|++++|+.+ ++.+ +||+.++++|||+.|++|||++||||
T Consensus 9 ~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~n 88 (795)
T 1w7j_A 9 KYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHN 88 (795)
T ss_dssp TTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHHH
T ss_pred cCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHHH
Confidence 4569999999999999999973 45679999999999998874 5777 59999999999999999999999999
Q ss_pred HHHHH-hcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCC
Q 005424 190 LHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAG 266 (697)
Q Consensus 190 L~~Ry-~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAG 266 (697)
|+.|| .+++||||+|++||+||||+++|+|++++++.|+++... ||||||||++||++|+++++|||||||||||||
T Consensus 89 L~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAG 168 (795)
T 1w7j_A 89 LKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAG 168 (795)
T ss_dssp HHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSS
T ss_pred HHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCC
Confidence 99999 999999999999999999999999999999999998765 899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCC---CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCce
Q 005424 267 KTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (697)
Q Consensus 267 KTe~tK~il~yLa~~~~~~---~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSR 343 (697)
|||++|++|+|||.++++. .++++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|++|||||||
T Consensus 169 KTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSR 248 (795)
T 1w7j_A 169 KTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGG
T ss_pred cchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccce
Confidence 9999999999999998764 7999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 005424 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (697)
Q Consensus 344 Vv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~i 423 (697)
||+|++||||||||||||+|+++++|++|+|.++.+|+||+|++|..++++||+++|+.|++||++|||+++|+.+||+|
T Consensus 249 Vv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~i 328 (795)
T 1w7j_A 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRI 328 (795)
T ss_dssp GTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEecCCHHHHHHHHHHHHHHHH
Q 005424 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (697)
Q Consensus 424 LAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY 503 (697)
||||||||||+|...++++.....+.+.++.+|+||||++++|.++||+|++++++|.+++++|++||.++||||||+||
T Consensus 329 laaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY 408 (795)
T 1w7j_A 329 LAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIY 408 (795)
T ss_dssp HHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987655333333688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCccccc
Q 005424 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (697)
Q Consensus 504 ~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i 583 (697)
+|||+|||.+||++|.... ....+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||++|||+|+.|
T Consensus 409 ~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i 487 (795)
T 1w7j_A 409 ANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLI 487 (795)
T ss_dssp HHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9999999999999998653 356899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc--ccceeeeccCCCCceEEEeeecccccccchhhh
Q 005424 584 DFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH--AFGIFIQADLTGNFFMFCMVASITTDTKISMNI 660 (697)
Q Consensus 584 ~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~--~fg~~~~~~~~~~~F~i~h~a~~~~~~~~~~~~ 660 (697)
+|.||++|||||++| +|||+||| +|..|++||.+|+.++...| +...+..|......|.|+||||.
T Consensus 488 ~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~---------- 556 (795)
T 1w7j_A 488 DFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADK---------- 556 (795)
T ss_dssp CCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCE----------
T ss_pred CccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceE----------
Confidence 999999999999997 99999998 58899999999999986665 34555666667889999999999
Q ss_pred HHHHHHHHHHhccccceeeee-eccCCC-Cccccccc
Q 005424 661 LSAKVLRFLLFNFRALQIIDI-LMSGSR-SKFVGVML 695 (697)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 695 (697)
|.|.|.+||+||+|.|.-+.+ ||.+|+ ++||..+.
T Consensus 557 V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf 593 (795)
T 1w7j_A 557 VEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELF 593 (795)
T ss_dssp EEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTT
T ss_pred EEEechhHHhhccccccHHHHHHHHhccccHHHHHHh
Confidence 999999999999999998877 999999 99987664
No 5
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=6.5e-164 Score=1459.77 Aligned_cols=590 Identities=39% Similarity=0.615 Sum_probs=559.6
Q ss_pred CCccccCCCCCcccCCccc--cccccccccccccCcEEE---EecCCCCEEEEEEEeeeCCeeEEEcCCCcEEEEecCCc
Q 005424 87 EDLDSAASPLPSVSASHTD--RRWSDTTSYAGKKKLQSW---FQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENL 161 (697)
Q Consensus 87 ~~~~~~~~p~~~l~~~~~e--~~~~q~~~~~~k~~~~vW---v~~~~~~~~~~~v~s~~~~~v~v~~~~g~~~~v~~~~l 161 (697)
+.+.+..+|++|||+++++ ++.+ ||+.++ +|| +||++++|++|+|++.++++++|++++|++++|+.+++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~--~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~ 77 (1010)
T 1g8x_A 3 PIHDRTSDYHKYLKVKQGDSDLFKL---TVSDKR--YIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDA 77 (1010)
T ss_dssp TTSCTTSHHHHHHSCCCCSCCSSSC---CCCCCC--EEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTC
T ss_pred chhhhhcchhhhHhcchhhhhHhhc---chhcCC--ceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhc
Confidence 4566678889999999998 6666 899876 999 99999999999999999999999999999999999999
Q ss_pred ccCCCCccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhH
Q 005424 162 VSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYA 239 (697)
Q Consensus 162 ~~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifa 239 (697)
.++||+.++++|||+.|++|||++||+||+.||.+++||||+|++||+||||+++|+|+++++..|+++... ||||||
T Consensus 78 ~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifa 157 (1010)
T 1g8x_A 78 NQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFA 157 (1010)
T ss_dssp CBCCCGGGTTCSBGGGCSSCCHHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHH
T ss_pred cccCcchhcchhhhhhhhcccHHHHHHHHHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 899999
Q ss_pred HHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCC------CchhhhhhhchHHHhhccccccCCCCCC
Q 005424 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSS 313 (697)
Q Consensus 240 vA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~~------~ie~~Il~snpILEAFGNAKT~rNdNSS 313 (697)
||++||++|+++++||||||||||||||||++|+||+|||.+++++ .++++|+++||||||||||||+||||||
T Consensus 158 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSS 237 (1010)
T 1g8x_A 158 ISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSS 237 (1010)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEE
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCcc
Confidence 9999999999999999999999999999999999999999997643 6899999999999999999999999999
Q ss_pred ccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCC
Q 005424 314 RFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSING 393 (697)
Q Consensus 314 RFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~ 393 (697)
||||||+|+|+.+|+|+||+|.+|||||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++
T Consensus 238 RFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~ 317 (1010)
T 1g8x_A 238 EFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKG 317 (1010)
T ss_dssp CSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBT
T ss_pred ccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcce
Q 005424 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTR 473 (697)
Q Consensus 394 ~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r 473 (697)
+||+++|+.|++||++|||+++|+..||+|||||||||||+|...++ +++++.+.+.++.+|.||||++++|.++||+|
T Consensus 318 ~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~ 396 (1010)
T 1g8x_A 318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEP 396 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSC
T ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999987655 67889999999999999999999999999999
Q ss_pred eeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHh
Q 005424 474 KMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYA 553 (697)
Q Consensus 474 ~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINya 553 (697)
++++|+|.+++++|++||.++||||||+||+|||+|||.+||++|.... ...+||||||||||+|+.|||||||||||
T Consensus 397 ~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~ 474 (1010)
T 1g8x_A 397 RILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYT 474 (1010)
T ss_dssp EEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHH
T ss_pred EEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998643 56899999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhc-CCcceeeecc-cccccCcchhhhhhhhhhhcc--
Q 005424 554 NERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-VPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHA-- 628 (697)
Q Consensus 554 NEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~-kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~-- 628 (697)
||||||+||+|+|+.||+||.+|||+|++|+|. ||++|||||++ +|+|||+||| +|..|++||.+++.++...++
T Consensus 475 NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~ 554 (1010)
T 1g8x_A 475 NEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKK 554 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999995 99999999998 5999999998 588999999999999755443
Q ss_pred cceeeeccCCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCcccccc
Q 005424 629 FGIFIQADLTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVM 694 (697)
Q Consensus 629 fg~~~~~~~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 694 (697)
...+..|....+.|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+
T Consensus 555 ~~~f~~~~~~~~~F~i~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~l 611 (1010)
T 1g8x_A 555 NAKYEEPRFSKTEFGVTHYAGQ----------VMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKL 611 (1010)
T ss_dssp CTTEECCTTCSSEEEEEETTEE----------EEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHH
T ss_pred CCCcccCCCCCCCEEEeeeceE----------EEEeecCccccccccccHHHHHHHHhCcHHHHHHH
Confidence 3445556656679999999999 999999999999999998888 9999999998765
No 6
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=5.7e-162 Score=1410.55 Aligned_cols=563 Identities=36% Similarity=0.580 Sum_probs=514.3
Q ss_pred EEEEecCCCCEEEEEEEeeeCCeeEEEcC--CCcEEEEecCCcccCCCCccCCcCCcccccCCCchhHHHHHHHHHhcCC
Q 005424 121 QSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDM 198 (697)
Q Consensus 121 ~vWv~~~~~~~~~~~v~s~~~~~v~v~~~--~g~~~~v~~~~l~~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~ 198 (697)
+|||||++++|++|+|++..+++++|++. +|++++++.+++.++||+..+++|||+.|++|||++|||||+.||.+++
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 69999999999999999999999999964 6889999999999999999999999999999999999999999999999
Q ss_pred cccccCCeEEEecCCccC-CCCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 199 IYTKAGPVLVAINPFKKV-PLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 199 IYTy~G~iLIaVNPyk~l-piY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
||||+|++||+||||+++ |+|++++++.|+++... ||||||||++||++|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 69999999999998876 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCC-CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcc
Q 005424 276 QYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAY 354 (697)
Q Consensus 276 ~yLa~~~~~~-~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNf 354 (697)
+|||.+++++ .++++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|++|||||||||+|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 9999987654 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCHHHHHhcCCCCcccCccccCCCc--------------------------cccCCcchHHHHHHHHHHHh
Q 005424 355 HIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALD 408 (697)
Q Consensus 355 HIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~--------------------------~~~~~~dD~~~F~~l~~Al~ 408 (697)
|||||||+|+++++|++|+|.++.+|+||+|+.+ ..++++||+++|+.|++||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999853 23567999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCC-CCceee--cChhHHHHHHHhhCCCHHHHHHhhcceeee-----eccc
Q 005424 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGND 480 (697)
Q Consensus 409 ~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~-~~~~~~--~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~-----v~~e 480 (697)
+|||+++|+.+||+|||||||||||+|...++ ++.+++ .+.+.++.||+||||++++|.++||+|++. ++||
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999997432 333444 457899999999999999999999999987 6799
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhh
Q 005424 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (697)
Q Consensus 481 ~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~ 560 (697)
.++++++++||.++||||||+||+|||+|||++||++|... ....+||||||||||+|+.|||||||||||||||||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999753 3468999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccc-eeeeccC-
Q 005424 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFG-IFIQADL- 637 (697)
Q Consensus 561 Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg-~~~~~~~- 637 (697)
||+|+|+.||+||++|||+|++|+|.||++|||||++||+|||+||| +|..|++||..|+.++...|+-+ .+..|..
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999998 68899999999999976555422 1222221
Q ss_pred ---------CCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 638 ---------TGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 638 ---------~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
....|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+.
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~----------V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf 617 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGA----------VCYETTQFVEKNNDALHMSLESLICESRDKFIRELF 617 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEE----------EEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC
T ss_pred cccccccccCCCceEeeecCcc----------EeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHc
Confidence 2468999999999 999999999999999999888 99999999987653
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.6e-161 Score=1439.55 Aligned_cols=569 Identities=37% Similarity=0.583 Sum_probs=536.9
Q ss_pred ccccccCcEEEEecCCCCEEEEEEEeeeCCeeEEEcCC-CcEEEEecCCcccCCCCccCCcCCcccccCCCchhHHHHHH
Q 005424 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (697)
Q Consensus 113 ~~~~k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~~~-g~~~~v~~~~l~~~np~~~~~veDL~~L~~LnE~sVL~nL~ 191 (697)
||+.++ +|||||++++|++|+|++.++++++|++++ |++++|+.+++.++||+.++++|||+.|++|||++|||||+
T Consensus 4 ~~~~~~--~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~ 81 (995)
T 2ycu_A 4 EWTARR--LVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLR 81 (995)
T ss_dssp CCGGGC--EEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHH
T ss_pred cccCCC--eEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHH
Confidence 888877 999999999999999999999999999874 56999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhH
Q 005424 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (697)
Q Consensus 192 ~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe 269 (697)
.||.+++||||+|++||+||||+++|+|+++++..|+++... ||||||||++||++|+++++||||||||||||||||
T Consensus 82 ~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe 161 (995)
T 2ycu_A 82 ERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTE 161 (995)
T ss_dssp HHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHH
T ss_pred HHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 999999999999999999999999999999999999998775 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC----------CCchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeec
Q 005424 270 TAKIAMQYLAALGGG----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (697)
Q Consensus 270 ~tK~il~yLa~~~~~----------~~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLL 339 (697)
++|+||+|||.++++ +.|+++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|.+|||
T Consensus 162 ~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLL 241 (995)
T 2ycu_A 162 NTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241 (995)
T ss_dssp HHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEec
Confidence 999999999999764 3689999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHH
Q 005424 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (697)
Q Consensus 340 EKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~ 419 (697)
||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++++ ..+++ ||+++|+.|++||++|||+++|+..
T Consensus 242 EksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~ 319 (995)
T 2ycu_A 242 EKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIIS 319 (995)
T ss_dssp CGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999986 57888 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEecCCHHHHHHHHHHHH
Q 005424 420 VFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 499 (697)
Q Consensus 420 I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~lt~~qA~~~RDaLA 499 (697)
||+|||||||||||+|...++++++++.+.+.++.+|.||||++++|.++||+|++++|+|.+++++|++||.++|||||
T Consensus 320 i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdala 399 (995)
T 2ycu_A 320 MLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALA 399 (995)
T ss_dssp HHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHH
Confidence 99999999999999999877777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCc
Q 005424 500 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 579 (697)
Q Consensus 500 K~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~ 579 (697)
|+||+|||+|||.+||++|.........+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+
T Consensus 400 k~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~ 479 (995)
T 2ycu_A 400 KATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIP 479 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCC
Confidence 99999999999999999998643325689999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CChHhHHHhhhc--CCcceeeecc-cccccCcchhhhhhhhhhhccc-ceeeeccC--CCCceEEEeeecccc
Q 005424 580 WAKVDF-EDNKDCLNLFEK--VPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAF-GIFIQADL--TGNFFMFCMVASITT 652 (697)
Q Consensus 580 w~~i~f-~DN~~~ldLie~--kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~f-g~~~~~~~--~~~~F~i~h~a~~~~ 652 (697)
|++|+| .||++|||||++ +|+|||+||| +|..|++||.+|+.++...|+- ..+..|.. ....|.|+||||.
T Consensus 480 w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~-- 557 (995)
T 2ycu_A 480 WTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGK-- 557 (995)
T ss_dssp CCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEE--
T ss_pred ccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCC--
Confidence 999999 599999999998 4899999998 6889999999999997665542 33333432 4678999999999
Q ss_pred cccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 653 DTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
|.|.|.+||+||+|.|.-+.+ ||.+|+++||..+.
T Consensus 558 --------V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf 593 (995)
T 2ycu_A 558 --------VDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIW 593 (995)
T ss_dssp --------EEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHT
T ss_pred --------ccccccchhhhccccccHHHHHHHHhCcHHHHHHHh
Confidence 999999999999999998888 99999999987653
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.3e-161 Score=1468.14 Aligned_cols=590 Identities=37% Similarity=0.588 Sum_probs=551.1
Q ss_pred CCCCCcccCCccccccc-cccccccccCcEEEEecCCCCEEEEEEEeeeCCeeEEEc-CCCcEEEEecCCcccCCCCccC
Q 005424 93 ASPLPSVSASHTDRRWS-DTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDILD 170 (697)
Q Consensus 93 ~~p~~~l~~~~~e~~~~-q~~~~~~k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~-~~g~~~~v~~~~l~~~np~~~~ 170 (697)
.+|++||+++++..... ++.||+.++ +|||||++++|++|+|++..|++++|.+ ++|++++|+.+++.++||+.++
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~ 83 (1184)
T 1i84_S 6 SDDEKFLFVDKNFVNNPLAQADWSAKK--LVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFS 83 (1184)
T ss_dssp CTTGGGTSCCCCSCCCHHHHHHTTCTT--EEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGT
T ss_pred cchHHHHhcCHHHHhhhhhcCCcccCC--eEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCcccc
Confidence 46789999998855443 578999876 9999999999999999999999999995 5889999999999999999999
Q ss_pred CcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHH
Q 005424 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (697)
Q Consensus 171 ~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m 248 (697)
+++||+.|++|||++|||||+.||.+++||||+|++||+||||+++|+|+++++..|+++... ||||||||+.||++|
T Consensus 84 ~~~Dl~~l~~l~e~~vl~~L~~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m 163 (1184)
T 1i84_S 84 KVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM 163 (1184)
T ss_dssp TCSBTTSSSCCCTTHHHHHHHHHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHH
T ss_pred ccchhhhhccccHHHHHHHHHHHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 899999999999999
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC-----------------CCchhhhhhhchHHHhhccccccCCCC
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-----------------SGIEYEILKTNPILEAFGNAKTSRNDN 311 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~~-----------------~~ie~~Il~snpILEAFGNAKT~rNdN 311 (697)
+++++||||||||||||||||++|+||+|||+++++ +.|+++|+++||||||||||||+||||
T Consensus 164 ~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~N 243 (1184)
T 1i84_S 164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDN 243 (1184)
T ss_dssp HHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEE
T ss_pred HhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCcc
Confidence 999999999999999999999999999999999764 368999999999999999999999999
Q ss_pred CCccccEEEEEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCcccc
Q 005424 312 SSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSI 391 (697)
Q Consensus 312 SSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~ 391 (697)
||||||||+|+|+.+|+|+||+|.+|||||||||+|++||||||||||||+|+++++|++|+|.++.+|+||+++ |..+
T Consensus 244 SSRfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~-~~~~ 322 (1184)
T 1i84_S 244 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNG-HVPI 322 (1184)
T ss_dssp EECSCEEEEEEECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTS-SCCC
T ss_pred ccccceeEEEEECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCC-CcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 5688
Q ss_pred CCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhc
Q 005424 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALS 471 (697)
Q Consensus 392 ~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt 471 (697)
+++||+++|..|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+|.||||++++|.++||
T Consensus 323 ~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~ 402 (1184)
T 1i84_S 323 PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSIL 402 (1184)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999977667788899999999999999999999999999
Q ss_pred ceeeeeccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHh
Q 005424 472 TRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (697)
Q Consensus 472 ~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcIN 551 (697)
+|++++|+|.+++++|++||.++||||||+||+|||+|||.+||.+|++.......+||||||||||+|+.|||||||||
T Consensus 403 ~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciN 482 (1184)
T 1i84_S 403 TPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCIN 482 (1184)
T ss_dssp SCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHH
T ss_pred CcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864334568999999999999999999999999
Q ss_pred HhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccC-ChHhHHHhhhcC--Ccceeeecc-cccccCcchhhhhhhhhhhc
Q 005424 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKV--PSPLTQLRV-FVLTTKGVLLCYIFYLVVCH 627 (697)
Q Consensus 552 yaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~-DN~~~ldLie~k--p~GIlslL~-~~~~~~~t~~~~~~~~~~~~ 627 (697)
||||+||||||+|+|+.||+||.+|||+|.+|+|. ||++|||||+++ |.|||+||| +|..|++||.+|+.++...|
T Consensus 483 y~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~ 562 (1184)
T 1i84_S 483 YTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999995 999999999983 349999998 68899999999999986666
Q ss_pred cc-ceeeeccC--CCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 628 AF-GIFIQADL--TGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 628 ~f-g~~~~~~~--~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
+- ..+..|.. ....|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+.
T Consensus 563 ~~~~~~~~~~~~~~~~~F~i~Hyag~----------V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf 624 (1184)
T 1i84_S 563 GNHAKFQKSKQLKDKTEFCILHYAGK----------VTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLW 624 (1184)
T ss_dssp SSCTTEEECSSCTTTCEEEEECSSCE----------EEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHH
T ss_pred CCCCCccCCCCCCCCCcEEEECCCce----------EEeccCCchhhccCcccHHHHHHHHhCchHHHHHHh
Confidence 43 33344443 5789999999999 999999999999999998888 99999999987653
No 9
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=3.6e-161 Score=1433.90 Aligned_cols=566 Identities=36% Similarity=0.584 Sum_probs=516.6
Q ss_pred cCcEEEEecCCCCEEEEEEEeeeCCeeEEEcC--CCcEEEEecCCcccCCCCccCCcCCcccccCCCchhHHHHHHHHHh
Q 005424 118 KKLQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYK 195 (697)
Q Consensus 118 ~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~~--~g~~~~v~~~~l~~~np~~~~~veDL~~L~~LnE~sVL~nL~~Ry~ 195 (697)
+|.+|||||++++|++|+|++..+++++|.+. +|++++++.+++.|+||+..+++|||+.|++|||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999998864 5789999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCeEEEecCCccCC-CCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHH
Q 005424 196 QDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (697)
Q Consensus 196 ~~~IYTy~G~iLIaVNPyk~lp-iY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 272 (697)
+++||||+|++|||||||+++| +|++++++.|+++... ||||||||++||++|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999998 9999999999998876 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCC-CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCceeeecCCCC
Q 005424 273 IAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351 (697)
Q Consensus 273 ~il~yLa~~~~~~-~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gE 351 (697)
+||+|||.+++++ .++++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|++|||||||||+|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 9999999987654 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHhcCCCHHHHHhcCCCCcccCccccCC--------------------------CccccCCcchHHHHHHHHH
Q 005424 352 RAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVE 405 (697)
Q Consensus 352 RNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs--------------------------~~~~~~~~dD~~~F~~l~~ 405 (697)
||||||||||+|+++++|++|+|.++++|+||+|+ +|..++++||+++|.+|++
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999986 3567789999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEeCCCC---ceeecChhHHHHHHHhhCCCHHHHHHhhcceeee-----e
Q 005424 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----V 477 (697)
Q Consensus 406 Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~~~~~---~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~-----v 477 (697)
||++|||+++|+.+||+|||||||||||+|.+.++.+ .+...+.+.++.||.||||++++|.++||++.+. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998654332 3455667889999999999999999999998874 6
Q ss_pred ccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHH
Q 005424 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (697)
Q Consensus 478 ~~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkL 557 (697)
++|.++++++++||.++||||||+||++||+|||++||++|... ....+||||||||||+|+.|||||||||||||||
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999864 3468999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccc-eeeec
Q 005424 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFG-IFIQA 635 (697)
Q Consensus 558 Qq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg-~~~~~ 635 (697)
|||||+|+|+.||+||.+|||+|++|+|.||++|||||++||.|||+||| +|..|++||.+++.++...|+-+ .+..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999999999999999999999999999999999998 68899999999999986655432 22222
Q ss_pred c----------CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 636 D----------LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 636 ~----------~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
. .....|+|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||-.|.
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~----------V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf 621 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGA----------VCYETTQFVEKNNDALHMSLESLICESRDKFIRELF 621 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEE----------EEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTT
T ss_pred cccccccccccCCCCCeEEEcCCcc----------EEEecCChhhhccccccHHHHHHHHhCCcHHHHHhh
Confidence 2 13467999999999 999999999999999999888 99999999997764
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=4.7e-160 Score=1436.33 Aligned_cols=566 Identities=42% Similarity=0.672 Sum_probs=528.0
Q ss_pred cCcEEEEecCCCCEEEEEEEee---eCCeeEEEcCCCcEEEEec----CCccc-CCCCccCCcCCcccccCCCchhHHHH
Q 005424 118 KKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVLYN 189 (697)
Q Consensus 118 ~~~~vWv~~~~~~~~~~~v~s~---~~~~v~v~~~~g~~~~v~~----~~l~~-~np~~~~~veDL~~L~~LnE~sVL~n 189 (697)
+|.+|||||++++|++|+|++. .++.++|.+++|++++|+. +++.+ +||+.++++|||+.|++|||++||||
T Consensus 9 ~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~n 88 (1080)
T 2dfs_A 9 KYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLHN 88 (1080)
T ss_dssp TTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHHHH
T ss_pred cCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHHHH
Confidence 4669999999999999999973 3456889999998888876 45777 59999999999999999999999999
Q ss_pred HHHHH-hcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCC
Q 005424 190 LHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAG 266 (697)
Q Consensus 190 L~~Ry-~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAG 266 (697)
|+.|| .+++||||+|++||+||||+++|+|+++++..|+++... ||||||||+.||++|+++++|||||||||||||
T Consensus 89 L~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAG 168 (1080)
T 2dfs_A 89 LKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAG 168 (1080)
T ss_dssp HHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSS
T ss_pred HHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 99999 999999999999999999999999999999999998765 899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCC---CchhhhhhhchHHHhhccccccCCCCCCccccEEEEEecCCCCccceeeeeeeccCce
Q 005424 267 KTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (697)
Q Consensus 267 KTe~tK~il~yLa~~~~~~---~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~L~F~~~G~i~Ga~I~tYLLEKSR 343 (697)
|||++|+||+|||++++++ +++++|+++||||||||||||+||||||||||||+|+|+.+|+|+||+|.+|||||||
T Consensus 169 KTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsR 248 (1080)
T 2dfs_A 169 KTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248 (1080)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGG
T ss_pred ccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCce
Confidence 9999999999999998764 7999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCcchhhHHHhcCCCHHHHHhcCCCCcccCccccCCCccccCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 005424 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (697)
Q Consensus 344 Vv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~~~~~y~yL~qs~~~~~~~~dD~~~F~~l~~Al~~LGfs~ee~~~I~~i 423 (697)
||+|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|..|++||++|||+++|+.+||+|
T Consensus 249 Vv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~i 328 (1080)
T 2dfs_A 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRI 328 (1080)
T ss_dssp GTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeeeEEeCCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceeeeeccceEEecCCHHHHHHHHHHHHHHHH
Q 005424 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (697)
Q Consensus 424 LAAILhLGNi~F~~~~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i~v~~e~i~~~lt~~qA~~~RDaLAK~LY 503 (697)
||||||||||+|...+++......+.+.++.+|.||||++++|.++||+|++.+++|.+++++|++||.++||||||+||
T Consensus 329 laaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY 408 (1080)
T 2dfs_A 329 LAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIY 408 (1080)
T ss_dssp HHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999987655433334788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHhHhhHHHHhhhhhhhhhhhhhhhhhcCCccccc
Q 005424 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (697)
Q Consensus 504 ~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcINyaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i 583 (697)
++||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|
T Consensus 409 ~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i 487 (1080)
T 2dfs_A 409 ANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLI 487 (1080)
T ss_dssp HHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccc
Confidence 9999999999999998653 356899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhc--ccceeeeccCCCCceEEEeeecccccccchhhh
Q 005424 584 DFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCH--AFGIFIQADLTGNFFMFCMVASITTDTKISMNI 660 (697)
Q Consensus 584 ~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~--~fg~~~~~~~~~~~F~i~h~a~~~~~~~~~~~~ 660 (697)
+|.||++|||||++| +|||+||| +|..|+|||.+|+.++...| ....+..|......|.|+||||.
T Consensus 488 ~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~---------- 556 (1080)
T 2dfs_A 488 DFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADK---------- 556 (1080)
T ss_dssp CCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCE----------
T ss_pred cccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceE----------
Confidence 999999999999997 99999998 58899999999999987665 34555666667889999999999
Q ss_pred HHHHHHHHHHhccccceeeee-eccCC-CCccccccc
Q 005424 661 LSAKVLRFLLFNFRALQIIDI-LMSGS-RSKFVGVML 695 (697)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 695 (697)
|.|.|.|||+||+|.|.-+.+ ||.+| +++||..+.
T Consensus 557 V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf 593 (1080)
T 2dfs_A 557 VEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELF 593 (1080)
T ss_dssp EEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSC
T ss_pred EEEehhhHHHhccccccHHHHHHHHcccccHHHHHHh
Confidence 999999999999999998877 99999 999987654
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=3.1e-156 Score=1347.01 Aligned_cols=517 Identities=38% Similarity=0.601 Sum_probs=478.9
Q ss_pred ccCCcCCcccccCCCchhHHHHHHHHHhcCCcccccCCeEEEecCCccCCCCChhHHHhhccCCCC--CCchhHHHHHHH
Q 005424 168 ILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (697)
Q Consensus 168 ~~~~veDL~~L~~LnE~sVL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lpiY~~~~~~~Y~~~~~~--~PHifavA~~Ay 245 (697)
..+++|||+.|++|||++||+||+.||.+++||||+|++||+||||+++|+|+++++..|+++... ||||||||++||
T Consensus 6 ~~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay 85 (697)
T 1lkx_A 6 KAEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAY 85 (697)
T ss_dssp ---CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHH
T ss_pred cccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998775 899999999999
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC-CC----CchhhhhhhchHHHhhccccccCCCCCCccccEEE
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-GS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~-~~----~ie~~Il~snpILEAFGNAKT~rNdNSSRFGKfi~ 320 (697)
++|+++++||||||||||||||||++|+||+|||.+++ ++ .++++|+++||||||||||||+||||||||||||+
T Consensus 86 ~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 165 (697)
T 1lkx_A 86 RSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYME 165 (697)
T ss_dssp HHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEE
T ss_pred HHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEE
Confidence 99999999999999999999999999999999999987 32 68999999999999999999999999999999999
Q ss_pred EEecCCCCccceeeeeeeccCceeeecCCCCCcchhhHHHhcCCCHHHHHhcCCC-CcccCccccCCCccccCCcchHHH
Q 005424 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQ 399 (697)
Q Consensus 321 L~F~~~G~i~Ga~I~tYLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~r~~l~L~-~~~~y~yL~qs~~~~~~~~dD~~~ 399 (697)
|+|+.+|+|+||+|++|||||||||+|++||||||||||||+|+++++|++|+|. ++.+|+||+|++|..++++||+++
T Consensus 166 i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~ 245 (697)
T 1lkx_A 166 MQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245 (697)
T ss_dssp EEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHH
T ss_pred EEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCeeeEEe----CCCCceeecChhHHHHHHHhhCCCHHHHHHhhcceee
Q 005424 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKM 475 (697)
Q Consensus 400 F~~l~~Al~~LGfs~ee~~~I~~iLAAILhLGNi~F~~~----~~~~~~~~~~~e~l~~aA~LLGvd~~~L~~aLt~r~i 475 (697)
|+.|++||++|||+++|+.+||+|||||||||||+|... ++.+.+++.+.+.++.+|+||||++++|.++||+|++
T Consensus 246 f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 325 (697)
T 1lkx_A 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSI 325 (697)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEE
Confidence 999999999999999999999999999999999999872 2235789999999999999999999999999999999
Q ss_pred eec----cceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccceEEeeccCCCccCCCCCHHHHHHh
Q 005424 476 RVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (697)
Q Consensus 476 ~v~----~e~i~~~lt~~qA~~~RDaLAK~LY~rLF~WIV~~IN~~L~~~~~~~~~~IgILDIfGFE~f~~NsFEQLcIN 551 (697)
.++ +|.+++++|++||.++||||||+||+|||+|||.+||++|.... ....+||||||||||+|+.|||||||||
T Consensus 326 ~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcIN 404 (697)
T 1lkx_A 326 STGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNIN 404 (697)
T ss_dssp ---------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHH
T ss_pred eeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHH
Confidence 999 99999999999999999999999999999999999999998643 3468999999999999999999999999
Q ss_pred HhhHHHHhhhhhhhhhhhhhhhhhcCCcccccccCChHhHHHhhhcCCcceeeecc-cccccCcchhhhhhhhhhhcccc
Q 005424 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKVPSPLTQLRV-FVLTTKGVLLCYIFYLVVCHAFG 630 (697)
Q Consensus 552 yaNEkLQq~Fn~~iF~~EqeeY~~EGI~w~~i~f~DN~~~ldLie~kp~GIlslL~-~~~~~~~t~~~~~~~~~~~~~fg 630 (697)
||||||||+||+|+|+.||+||++|||+|++|+|.||++|||||++||+|||+||| +|..|++||..++.++...++-+
T Consensus 405 y~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~ 484 (697)
T 1lkx_A 405 FCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKN 484 (697)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998 58889999999999986554432
Q ss_pred eeee-cc------CCCCceEEEeeecccccccchhhhHHHHHHHHHHhccccceeeee-eccCCCCccccccc
Q 005424 631 IFIQ-AD------LTGNFFMFCMVASITTDTKISMNILSAKVLRFLLFNFRALQIIDI-LMSGSRSKFVGVML 695 (697)
Q Consensus 631 ~~~~-~~------~~~~~F~i~h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 695 (697)
-++. +. .....|.|+||||. |.|.|.+||+||+|.|.-+.+ ||.+|+++||..+.
T Consensus 485 ~~f~~~~~~~~k~~~~~~F~I~HyAG~----------V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf 547 (697)
T 1lkx_A 485 PHLQSYVVSKDRSIGDTCFRLKHYAGD----------VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLF 547 (697)
T ss_dssp TTEECTTTSCCTTSCTTEEEEEETTEE----------EEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHC
T ss_pred CccccCCCCCCCccccCceeeeeeeeE----------EEEccCChhhhhcccccHHHHHHHhccchHHHHHhc
Confidence 2222 21 23689999999999 999999999999999998888 99999999987653
No 12
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.88 E-value=0.0047 Score=57.09 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.5
Q ss_pred HHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 248 m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..+....|+|+|++|+|||..++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344466789999999999999999999887754
No 13
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.47 E-value=0.018 Score=53.27 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCChhHHHhhccCCCCC-CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 216 VPLYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 216 lpiY~~~~~~~Y~~~~~~~-PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+.-|..+..+.|+.....+ ..-=.. -......+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 5 l~~~~~~l~~~~~~~~~~~~~g~~~~-~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 5 LEKYSRDLTALARAGKLDPVIGRDTE-IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTTTEEEHHHHHHTTCSCCCCSCHHH-HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhhcchHH-HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555556666544331 000011 122233334566789999999999999999999887754
No 14
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.70 E-value=0.018 Score=55.60 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|+.....+.|+|.|.||||||+.+|.+...+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345666678899999999999999999997765
No 15
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.52 E-value=0.031 Score=53.94 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=26.8
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....+.|.|.|.||||||+.+|.+...|.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446678999999999999999999999886
No 16
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.11 E-value=0.044 Score=53.28 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.8
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..+.|.|.|.||||||+.++.+...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999998864
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.09 E-value=0.053 Score=52.29 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..+.+......+.++|+|++|+|||+.++.+.+.+...
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34444555578999999999999999999999887653
No 18
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.95 E-value=0.027 Score=55.16 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|||+|.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999887653
No 19
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.92 E-value=0.026 Score=53.66 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=22.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+-|+|+|.||||||+.++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998764
No 20
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.84 E-value=0.036 Score=52.29 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...+.++|.|++|+|||+.++.+...+..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999988763
No 21
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.72 E-value=0.032 Score=52.69 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred HHhcCceeEEEEeCCCCCChhHHHHHHHH
Q 005424 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 248 m~~~~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
|..-...+.|+|.|.||||||+.+|.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45556778999999999999999988754
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.66 E-value=0.054 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+.|+|.|++|+|||+.++.+.+.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999888764
No 23
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.58 E-value=0.033 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.+.|.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998763
No 24
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.51 E-value=0.036 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|-||||||+.++.+.+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999987654
No 25
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.42 E-value=0.063 Score=54.92 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.1
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+++.+. -...+.|+|+|.||||||+..+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 5678899999999999999999999988653
No 26
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.36 E-value=0.029 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.|.|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999987653
No 27
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.13 E-value=0.046 Score=52.15 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.|.|.|.||||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999987754
No 28
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.08 E-value=0.057 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.-|.|+|+|.+|||||+.++.+-+.|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35999999999999999999988766
No 29
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.81 E-value=0.062 Score=51.77 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|.|.|.||||||+.+|.+...+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998865
No 30
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.77 E-value=0.059 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
--|+|+|.+|||||+.++.+.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998776
No 31
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.77 E-value=0.051 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.|.|+||||||+..|.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999998764
No 32
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.76 E-value=0.066 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|.||||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998876
No 33
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.73 E-value=0.078 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|.||||||+.++.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999987654
No 34
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.72 E-value=0.062 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|-||||||+.++.+.+.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987765
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.71 E-value=0.1 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=27.7
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..+.......++|+|++|+|||+.++.+.+.+..
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344444555556999999999999999999887743
No 36
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.56 E-value=0.067 Score=52.09 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....-|+|+|.||||||+.++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999987754
No 37
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.51 E-value=0.051 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|.||||||+.++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999987765
No 38
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.49 E-value=0.14 Score=48.53 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.1
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.+..++|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999887753
No 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.49 E-value=0.07 Score=49.95 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=22.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988764
No 40
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.44 E-value=0.11 Score=50.40 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455678999999999999999999998875
No 41
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.38 E-value=0.054 Score=52.34 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....-|+|+|.||||||+.++.+.+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999987765
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.32 E-value=0.084 Score=49.23 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999988753
No 43
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.22 E-value=0.075 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.|+|+|.||||||+.++.+.+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988776
No 44
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.20 E-value=0.097 Score=49.21 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999888754
No 45
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.20 E-value=0.067 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.++|+|+||||||+..|.++..+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999987754
No 46
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.07 E-value=0.11 Score=50.24 Aligned_cols=32 Identities=31% Similarity=0.185 Sum_probs=27.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
.....|.|+|.||||||+.++.+...|...++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999998865443
No 47
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.03 E-value=0.089 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|.|.+|||||+.+|.+.+.|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999877
No 48
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.01 E-value=0.094 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...-|+|+|-+|||||+.++.+.+.|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988766
No 49
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.93 E-value=0.094 Score=50.42 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.|.|++|||||+..|.+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 50
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.85 E-value=0.064 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..+.++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346789999999999999999998865
No 51
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.85 E-value=0.1 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 667899999999999999999999987
No 52
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.82 E-value=0.11 Score=50.17 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..|+|+|.||||||+.++.+++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 5789999999999999999999987643
No 53
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.72 E-value=0.18 Score=52.46 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+....|.|+|.||||||+.++.+.++|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999988753
No 54
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.67 E-value=0.088 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998863
No 55
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.63 E-value=0.049 Score=52.38 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=24.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578899999999999999999998764
No 56
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.62 E-value=0.15 Score=55.97 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=29.7
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+++.+. ......|+|+|++|||||++.+.++.++.
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3566664 36678999999999999999999998874
No 57
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.56 E-value=0.11 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.+.|+|.|.+|||||+.+|.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 36789999999999999999865
No 58
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.52 E-value=0.21 Score=50.16 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....+++|+|++|+|||..++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5667899999999999999999887763
No 59
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.50 E-value=0.11 Score=51.41 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
....|+|+|.||||||+.++.+++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999988653
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.50 E-value=0.15 Score=52.74 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHHHhcC--ceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 235 PHVYAITDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~--~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.|..+. .+.+.+.... ...+++|+|++|+|||+.++.+.+.+...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454443 3344444443 46799999999999999999999988654
No 61
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.46 E-value=0.16 Score=54.47 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=29.4
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.++.+.. .....|+|+|.+|||||++.+.++.++..-
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3455543 344599999999999999999999998754
No 62
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.36 E-value=0.096 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.||||||+.++.+...|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999998886654
No 63
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.21 E-value=0.17 Score=53.69 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=28.8
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.+.|.|.|+||||||++++.+..++...++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456899999999999999999999999876554
No 64
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.20 E-value=0.13 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998766
No 65
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.19 E-value=0.098 Score=47.70 Aligned_cols=19 Identities=47% Similarity=0.770 Sum_probs=17.8
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-|+|+|-+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.12 E-value=0.17 Score=53.11 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.+.|.|.|.||||||+.+|.|...+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35678999999999999999999988764
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.10 E-value=0.15 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.1
Q ss_pred ceeEEEEeCCCCCChhHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKI 273 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~ 273 (697)
+.+.+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467899999999999999997
No 68
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.08 E-value=0.15 Score=47.72 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+++|-+|||||+.++.+.+.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998766
No 69
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.06 E-value=0.2 Score=52.02 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....|-|+|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5668999999999999999999988774
No 70
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.02 E-value=0.19 Score=47.44 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
....|+|.|.+|||||+.++.+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999988653
No 71
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.01 E-value=0.13 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999987765
No 72
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.98 E-value=0.11 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
....|+|+|+||||||+.+..+++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998887
No 73
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.97 E-value=0.13 Score=49.79 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|.|.|.||||||+.+|.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 74
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.96 E-value=0.13 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|-+|||||+.++.+.++|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998876
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.91 E-value=0.2 Score=52.12 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHHHHhcCcee--EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQ--SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 243 ~Ay~~m~~~~~nQ--sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+........... +++|+|++|+|||+.++.+.+.+..
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3444444456667 9999999999999999999887743
No 76
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.91 E-value=0.15 Score=49.15 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..|.|+|.||||||+.+..++++|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999987543
No 77
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.89 E-value=0.21 Score=50.64 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.8
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.+...+....++|+|++|.|||+.++.+.+.+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34445555555699999999999999999998874
No 78
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.84 E-value=0.13 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|+|.||||||+.++.+.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997754
No 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.82 E-value=0.19 Score=52.46 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=31.6
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+...+...+...+++|+|++|.|||..++.+.+.+...
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 344555566778899999999999999999999887553
No 80
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.81 E-value=0.19 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998776
No 81
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.79 E-value=0.14 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998866
No 82
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.77 E-value=0.16 Score=47.92 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 257 IIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
|+|+|-+|||||+.++.+.++|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999988653
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.74 E-value=0.057 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-|+|.|.||||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998853
No 84
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.67 E-value=0.15 Score=54.80 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.1
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
-...+.|+|+|.||||||++.+.++.++..-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3567899999999999999999999988654
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.57 E-value=0.21 Score=52.25 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
...+.|.|.|++|||||++++.+..++..-++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 35689999999999999999999998875443
No 86
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.47 E-value=0.11 Score=47.55 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
..+..|+|.||+|+|||..++.+-+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999887643
No 87
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.39 E-value=0.16 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998765
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.39 E-value=0.19 Score=48.14 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=26.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.++|.|++|||||+.++.++..++..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999977765443
No 89
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.38 E-value=0.16 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|.|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999997765
No 90
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.31 E-value=0.17 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
+..|+|+|-+|||||+.++.+.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999876
No 91
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.21 E-value=0.23 Score=56.41 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.+.|+|.|.||||||+..|.+...|..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 45789999999999999999999888764
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.07 E-value=0.2 Score=52.43 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+.|.|.|.||||||++++.+..++..-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999887544
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.98 E-value=0.21 Score=49.81 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|-|+|.+|||||+.+|.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988765
No 94
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.89 E-value=0.17 Score=47.25 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 95
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.87 E-value=0.12 Score=50.94 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=16.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH-HHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM-QYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il-~yL 278 (697)
..+.|.|+|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999988 654
No 96
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.75 E-value=0.19 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|.|+|.+|||||+.++.+.+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999987765
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.75 E-value=0.16 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|+||||||+.++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987643
No 98
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.71 E-value=0.21 Score=49.24 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987765
No 99
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.70 E-value=0.21 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+..|+|.|++|+|||+.++.+.+.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999887654
No 100
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.67 E-value=0.19 Score=47.71 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..-|+|.|-+|||||+.++.+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999988763
No 101
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.62 E-value=0.19 Score=47.01 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999888754
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.61 E-value=0.25 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.+.+.|.|++|||||+.++.++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999986544
No 103
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.59 E-value=0.19 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|+|-+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997765
No 104
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.54 E-value=0.18 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|+|+|-+|||||+.++.+.++|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998877
No 105
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.49 E-value=0.2 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+...|.|+|.+|||||+.++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999888664
No 106
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.49 E-value=0.15 Score=49.97 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+..-|+|.|-+|||||+.++.+.+.|
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999998765
No 107
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.49 E-value=0.2 Score=52.76 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.3
Q ss_pred HHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 243 TAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 243 ~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.- -...+++.|.|+||||||+.++.++.++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444433 3677999999999999999999999988
No 108
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.46 E-value=0.18 Score=50.66 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|.|.|.||||||+.+|.+.+.|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999998665
No 109
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.39 E-value=0.25 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.-|+|.|-+|||||+.++.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988765
No 110
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.37 E-value=0.13 Score=49.49 Aligned_cols=25 Identities=36% Similarity=0.250 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+-|.|+|.||||||+.++.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999887654
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.22 Score=52.63 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+.+.....+.+-+|+|+|.+|.|||.+++.+++-|...
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34455667889999999999999999999999998653
No 112
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.30 E-value=0.21 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.+|||||+.++.+.+.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.19 E-value=0.35 Score=49.05 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+....|+|.|++|+|||+.++.+.+.+...
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456689999999999999999999888653
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.12 E-value=0.13 Score=53.24 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=27.2
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.+..++++|+|++|+|||+.++.+.+.+...
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999887653
No 115
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.11 E-value=0.3 Score=52.47 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+.|.|.|.+|||||++++.+..++..-+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 468999999999999999999999887544
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.08 E-value=0.093 Score=56.07 Aligned_cols=27 Identities=37% Similarity=0.651 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.|+|+|+||||||+..+.++.++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999988754
No 117
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.08 E-value=0.51 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...-.|+|+|-+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 455679999999999999999998866
No 118
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.03 E-value=0.2 Score=47.89 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..-|+|+|-+|||||+.++.+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999888754
No 119
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.99 E-value=0.26 Score=49.95 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
...++|.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999988764
No 120
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.99 E-value=0.42 Score=51.65 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 235 PHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 235 PHifavA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
|++......+++.+.. -...+.|+|.|.+|||||+.++.+...+
T Consensus 149 ~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 149 PKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6666666777777753 4567899999999999999999998754
No 121
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.93 E-value=0.16 Score=47.44 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=17.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|-+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999886654
No 122
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.92 E-value=0.26 Score=47.17 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
......|+|+|-+|||||+.++.+.+.|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999998876
No 123
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.85 E-value=0.34 Score=50.83 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHh--------cCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 237 VYAITDTAIREMIR--------DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 237 ifavA~~Ay~~m~~--------~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+..+..+....++. ......|.|.|.+|+|||++++.+..+++..+
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 44444444444442 23467899999999999999999999987644
No 124
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.82 E-value=0.23 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.|.|.|.+|||||+..+.+...+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4688999999999999999999887
No 125
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.81 E-value=0.2 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3568899999999999999888754
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.77 E-value=0.15 Score=52.97 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.8
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.....+++|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 466789999999999999999999998854
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.47 E-value=0.2 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|+|-+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987754
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.44 E-value=0.38 Score=52.67 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCc-eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 241 TDTAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 241 A~~Ay~~m~~~~~-nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
|..+...+..... ..+++|.|++|+|||+.++.+.+++...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3344445554433 7899999999999999999999988654
No 129
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.44 E-value=0.18 Score=50.70 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|+++|.+|||||+.++.+.+.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999887654
No 130
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.44 E-value=0.15 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+...|.|.|.+|||||+.+|.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999988877554
No 131
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.40 E-value=0.27 Score=47.00 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..-|+|+|-+|||||+.++.+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988754
No 132
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.39 E-value=0.23 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.-|+|.|-+|||||+.++.+.+.|-
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988773
No 133
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.34 E-value=0.3 Score=49.30 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..-|+|+|-+|||||+.++.+.++|...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999886543
No 134
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.21 E-value=0.31 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+..|+|.||+|+|||+.++.+.+++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 345789999999999999988886643
No 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.04 E-value=0.37 Score=54.10 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=37.6
Q ss_pred CchhHHHHHHHHHHHhc---------CceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 235 PHVYAITDTAIREMIRD---------EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~---------~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++..-++
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35666666666666642 35689999999999999999999998875443
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.02 E-value=0.24 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
=+.++|+|.||||||+..++++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357899999999999999988765
No 137
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.02 E-value=0.24 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.|+|.|.||||||+.++.+.+.|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998765
No 138
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.96 E-value=0.42 Score=49.80 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=27.1
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.....++-..++++|++|+|||+.++.+.+.+.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34444455433499999999999999999999875
No 139
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.88 E-value=0.42 Score=50.32 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.|.|.|.+|+|||+++..+..+++..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987544
No 140
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.87 E-value=0.25 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999999887754
No 141
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.80 E-value=0.43 Score=49.66 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.++|+|++|.|||..++.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37999999999999999999988874
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.79 E-value=0.31 Score=46.24 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
....|+|+|-+|||||+.++.+-+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988776
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.79 E-value=0.24 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
.++|+|++|+|||+.++.+.+.|.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 399999999999999999988653
No 144
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.73 E-value=0.27 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+|+|.|++|+|||..++.+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887654
No 145
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.67 E-value=0.21 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|+|+|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887765
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.64 E-value=0.32 Score=46.42 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..-|+|+|-+|||||+.++.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999988764
No 147
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.63 E-value=0.51 Score=53.39 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCchhH---HHHHHHHHHH-hcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 233 ESPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 233 ~~PHifa---vA~~Ay~~m~-~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+||-|. |+......+. +.+....|+++|-+|||||+.++.+.+.|..
T Consensus 347 ~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 347 KLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3677776 6544333331 2344578999999999999999999887754
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.60 E-value=0.59 Score=48.46 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.6
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+....++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999999887753
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.52 E-value=0.32 Score=49.13 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=26.6
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.+...+....++++|++|+|||+.++.+.+.+.
T Consensus 30 ~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 30 KGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 3334445545699999999999999999998874
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.51 E-value=0.37 Score=49.62 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.4
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
....+..+....++|+|++|+|||+.++.+.+.+..
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444443344999999999999999999998753
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.50 E-value=0.37 Score=53.10 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=29.5
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.++....-.++||.|++|+|||+.++.+.+.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 345566666666899999999999999999998775
No 152
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.42 E-value=0.82 Score=53.08 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=42.5
Q ss_pred ccCCCCChhHHHhhccCCCCCCch-hHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 214 KKVPLYGNYYIEAYKSKSIESPHV-YAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 214 k~lpiY~~~~~~~Y~~~~~~~PHi-favA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.-|+.+..+.|+.....+ -| -.-.-.....++..+....++|.|++|+|||..++.+.+.+..
T Consensus 167 ~~l~~~~~~l~~~~~~~~~d~-~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 167 ERLENFTTNLNQLARVGGIDP-LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp --CCSSSCBHHHHHHTTCSCC-CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhHhHHHHHhcCCCCC-ccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345567777777777655432 11 0001112333445567789999999999999999999988754
No 153
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.36 E-value=0.23 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.--|.|+|-||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999887664
No 154
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.36 E-value=0.43 Score=47.05 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=26.0
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.++.++ ...+.+.|.|+||||||+..|.+...
T Consensus 14 ~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355555 35678999999999999999999876
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.35 E-value=0.32 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999987765
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.15 E-value=0.13 Score=47.14 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
..+..|+|.||+|+|||..++.+-
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999998876653
No 157
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.09 E-value=0.41 Score=54.51 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.0
Q ss_pred CCchhH---HHHHHHHHHH-hcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 234 SPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 234 ~PHifa---vA~~Ay~~m~-~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+||-|. |+......+. ..+....|+|+|-||||||+.++.+-+.|..
T Consensus 372 ~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 372 IPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 555554 5543332231 3445678999999999999999999888764
No 158
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.04 E-value=0.26 Score=47.10 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~ 276 (697)
.|.|+|.+|||||+.+|.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999998877
No 159
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.97 E-value=0.34 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999886544
No 160
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.96 E-value=0.29 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
+-.|.|+|.+|||||+.++.+-+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999888755
No 161
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.91 E-value=0.32 Score=48.84 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|+|.|++|+|||..++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999998886653
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.90 E-value=0.42 Score=46.43 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+.++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999988877776544
No 163
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.88 E-value=0.28 Score=49.25 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999988554
No 164
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.78 E-value=0.61 Score=45.94 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 237 ifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
++.+-+.+...+.. ++.++++|++|||||+....++
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 45555666666544 4789999999999998776554
No 165
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.78 E-value=0.33 Score=47.05 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
.|+|+|-+|||||+.++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.77 E-value=0.51 Score=48.10 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+..++|+|++|+|||..++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998765
No 167
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.76 E-value=0.28 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+...+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456899999999999999999886543
No 168
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.71 E-value=0.27 Score=49.67 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999988554
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.66 E-value=0.61 Score=48.74 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....++|.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 170
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.63 E-value=0.35 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.. +.+.|.|+||||||+..|.+...
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78899999999999999987654
No 171
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.62 E-value=0.99 Score=49.68 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred CCCChhHHHhhccCCCCCCch--hHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 217 PLYGNYYIEAYKSKSIESPHV--YAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 217 piY~~~~~~~Y~~~~~~~PHi--favA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.-|+.+..+.|+.....| -| =..-.. ...++..+....++|.|++|.|||..++.+.+.+..
T Consensus 164 ~~~~~~l~~~~r~~~ld~-iiGr~~~i~~-l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDP-VIGRSKEIQR-VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HSSCCBHHHHTTSSCSCC-CCCCHHHHHH-HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCC-ccCcHHHHHH-HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 346666667776554432 11 011112 223344466678999999999999999999988754
No 172
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.50 E-value=0.33 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999988654
No 173
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.45 E-value=0.36 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988654
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.41 E-value=0.32 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~ 276 (697)
.|.|+|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988865
No 175
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.36 E-value=0.32 Score=54.68 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 234 ~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.|+|..+..++|... .+....|+++|-||||||+.++.+-+-|..
T Consensus 377 rpeV~~vLr~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 367777777766332 233478999999999999999999998875
No 176
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.27 E-value=0.35 Score=51.15 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.|+|+|+||+|||+.+..+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 589999999999999999888774
No 177
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.20 E-value=0.36 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+..|+|.|++|+|||..++.+.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 178
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.18 E-value=0.17 Score=56.89 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.0
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.|+|+|++|||||++.+.++.++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999988765
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.14 E-value=0.37 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999887754
No 180
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.12 E-value=0.42 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yL 278 (697)
-|+|.|-+|||||+.++.+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.06 E-value=0.65 Score=46.90 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=26.7
Q ss_pred HHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 245 y~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.+...+....++|+|++|.|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 33444444433499999999999999999998874
No 182
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.05 E-value=0.37 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999888754
No 183
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.01 E-value=0.48 Score=48.24 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...+.++|.|++|||||+.++.+...++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999887764
No 184
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.00 E-value=0.46 Score=47.06 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
..-|+|.|-+|||||+.++.+.++|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998653
No 185
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.99 E-value=0.33 Score=49.84 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999886543
No 186
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.96 E-value=0.32 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
..+.+.|.|+||||||+..|.+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457889999999999999887743
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.96 E-value=0.57 Score=48.34 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.1
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
......|+|+|++|+|||..++.+.+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999886553
No 188
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.93 E-value=0.54 Score=46.79 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998854
No 189
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.93 E-value=0.43 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+-.|.|.|.||||||+.++.+.+.|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.86 E-value=0.4 Score=45.86 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.++|.|++|||||+.++.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988866
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.85 E-value=0.49 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|+|.|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998876
No 192
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.73 E-value=0.33 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
....|+|+|+||+|||+.+..+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999977665
No 193
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.69 E-value=0.37 Score=49.35 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=21.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|+||||||+..|.+...+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46788999999999999998886543
No 194
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.68 E-value=0.75 Score=48.27 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.4
Q ss_pred HHHHhc--CceeEEEE--eCCCCCChhHHHHHHHHHHHH
Q 005424 246 REMIRD--EVNQSIII--SGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 246 ~~m~~~--~~nQsIii--SGESGAGKTe~tK~il~yLa~ 280 (697)
+..... ...+.++| +|++|.|||+.++.+.+.+..
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 444444 56789999 999999999999999887754
No 195
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.60 E-value=0.4 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.+.+.|.|+||||||+..|.+...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 35688999999999999999887543
No 196
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.50 E-value=0.4 Score=51.12 Aligned_cols=28 Identities=32% Similarity=0.311 Sum_probs=24.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+..++|.|.||||||+.+|.++..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999877654
No 197
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.47 E-value=0.61 Score=49.30 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.-.|-|+|.||||||+.++.+...+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 347899999999999999999887753
No 198
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.44 E-value=0.37 Score=49.69 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
+.+.+.|.|+||||||+..|.+...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4678899999999999999888553
No 199
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.43 E-value=0.39 Score=49.45 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|++|+|||..++.+.+.+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 45569999999999999999887754
No 200
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.37 E-value=0.5 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+|++.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887755
No 201
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.33 E-value=0.39 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999887543
No 202
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.26 E-value=0.27 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+..|+|.|++|+|||..++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999987765
No 203
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.25 E-value=0.37 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999988654
No 204
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.13 E-value=0.42 Score=48.75 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=21.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3567899999999999999888754
No 205
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.00 E-value=0.46 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
.+.|.|+||||||+..+.+...+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999876643
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.95 E-value=0.51 Score=47.12 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
....|.|+|-+|||||+.++.+-+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999998877553
No 207
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.83 E-value=0.19 Score=53.09 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.++|+|+||||||+..+.++.++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999988764
No 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.83 E-value=0.45 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.|.|+||||||+..|.+..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999888744
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.65 E-value=0.52 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.|++.|.+|+|||++++.+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999998875
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.63 E-value=0.47 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.++|.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999887653
No 211
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.62 E-value=0.57 Score=49.27 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+..|++.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999987765
No 212
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.57 E-value=0.56 Score=46.50 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.-|+|.|-+|||||+.++.+.++|...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 469999999999999999999998653
No 213
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.52 E-value=0.39 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4577889999999999998887543
No 214
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.33 E-value=0.47 Score=47.63 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999998887543
No 215
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.29 E-value=0.81 Score=47.41 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.|.+.|.+|+|||++++.+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999886544
No 216
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.23 E-value=0.94 Score=46.43 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=34.1
Q ss_pred HHhhccCCCC----CCchhHHHHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 224 ~~~Y~~~~~~----~PHifavA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.++|+-+... ..|+. ...+.+.. .+.+..+++.|++|.|||+.++.+.+.+
T Consensus 17 ~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5667655443 23332 33334443 4456788999999999999999997765
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.11 E-value=0.47 Score=49.22 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+..|+|.||+|+|||..++.+-+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 457889999999999999998887653
No 218
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.07 E-value=0.59 Score=47.21 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..-|+|.|-+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999987543
No 219
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.80 E-value=0.54 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 346788999999999999998886543
No 220
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.75 E-value=0.21 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++.++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 457899999999999999999987754
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.72 E-value=1.2 Score=47.84 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH---hcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 239 AITDTAIREMI---RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 239 avA~~Ay~~m~---~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+++.+...+. ..++-.+|+|.|.+|||||+.++.+.+.|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35666666553 344456799999999999999998877554
No 222
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.71 E-value=0.48 Score=50.16 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=23.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.+.|.|+||||||+.+|.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999988753
No 223
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.61 E-value=0.56 Score=47.08 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=21.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..-|+|.|-+|||||+.++.+.++|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567999999999999999999999865
No 224
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.55 E-value=0.52 Score=47.81 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999998887543
No 225
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.47 E-value=0.48 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999998887543
No 226
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.44 E-value=1.1 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.+...+..--|+|.|.+|+|||+.+..++..+.
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444455667899999999999999988887653
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.43 E-value=0.59 Score=46.63 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|+|.||+|||+.+..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999988876653
No 228
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=83.39 E-value=0.54 Score=47.66 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.+...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999998887543
No 229
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.37 E-value=1.3 Score=46.30 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.8
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+-..+++++|+.|.|||+.++.+.+.|..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3455789999999999999999999998854
No 230
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.30 E-value=0.6 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|+|.|-+|||||+.++.+-+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998877
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.27 E-value=1.6 Score=50.81 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCChhHHHhhccCCCCC-CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 218 LYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 218 iY~~~~~~~Y~~~~~~~-PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-|+.+..+.|+.....+ ..-=..-+. ...++..+..-.+|+.|++|.|||..++.+.+.+..
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~-l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQR-VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHH-HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHH-HHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 46666666666544432 000011112 223334456667999999999999999999988754
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.26 E-value=1.2 Score=46.33 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.++|.|++|+|||..++.+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999887
No 233
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.16 E-value=0.78 Score=45.10 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|-+|||||+.++.+-+.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998876
No 234
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.92 E-value=0.6 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 377999999999999887765433
No 235
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.87 E-value=0.8 Score=45.13 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.....|.|+|.+|||||+.++.+.+.|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999887754
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.83 E-value=0.73 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~ 276 (697)
..|+|+|-+|||||+.++.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998876
No 237
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.77 E-value=1 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....--|+|.|.+|+|||+.+..++..+
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3345689999999999999999888775
No 238
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.73 E-value=0.7 Score=48.95 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 248 m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
|.....+.-|+|+|.||||||+.++.+.+.+
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 4444556789999999999999998887654
No 239
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.71 E-value=1 Score=45.21 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.9
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999999865
No 240
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=82.54 E-value=0.56 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.+.|.|+||||||+..|.+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678899999999999999988553
No 241
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.30 E-value=0.67 Score=44.67 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..|.|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999887654
No 242
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.29 E-value=0.8 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+++|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998876
No 243
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.14 E-value=1.7 Score=47.92 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
....|+++|.+|+|||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999987543
No 244
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.12 E-value=0.83 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|+|.|++|.|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999887764
No 245
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.08 E-value=0.68 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+....|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999886643
No 246
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.07 E-value=0.75 Score=47.30 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.+-.|++.|++|.|||..++.+.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999998877
No 247
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.91 E-value=0.71 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.+.+.+-|.|+||||||+..|.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3467889999999999999888754
No 248
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.85 E-value=0.74 Score=46.56 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.++|.|++|||||+.++.++..++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 468899999999999999999987554
No 249
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.78 E-value=0.64 Score=50.00 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45788999999999999988886543
No 250
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=81.67 E-value=0.56 Score=48.71 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34678999999999999999988654
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.64 E-value=0.92 Score=51.04 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=25.1
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.......+++.|++|+|||+.+|.+...+
T Consensus 104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 104 KSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 33457799999999999999999998877
No 252
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=81.33 E-value=0.75 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 34678899999999999998888654
No 253
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.98 E-value=0.76 Score=45.35 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|+|.|-.|||||+.++.+.++|
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998876
No 254
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=80.96 E-value=0.8 Score=49.20 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34678899999999999998888654
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.77 E-value=0.77 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|++.|++|+|||+.+|.+...+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999999999887653
No 256
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.71 E-value=1.4 Score=46.42 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHHH-hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 242 DTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 242 ~~Ay~~m~-~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.+.+. .-+....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 34555443 3467789999999999999999999998865443
No 257
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.56 E-value=1.3 Score=43.13 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.2
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+...--|.|+|-+|||||+.++.+-+.+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445678999999999999999988764
No 258
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.47 E-value=0.86 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.7
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..-|++.|-+|||||+.++.+.++|
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998876
No 259
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=80.43 E-value=0.85 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34678899999999999998887554
No 260
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=80.28 E-value=0.82 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.|.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999999887544
No 261
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.17 E-value=1.3 Score=48.74 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+.|.+.|.+|+|||+++..+..+++..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999999986543
No 262
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.04 E-value=0.82 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
--|+|+|.||||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887663
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.91 E-value=1.4 Score=45.79 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=26.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999986543
No 264
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.79 E-value=0.92 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....|++.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999988765
No 265
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=79.71 E-value=10 Score=31.47 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=43.0
Q ss_pred ccCcEEEEecCCCCEEEEEEEeeeCCeeEEEcCCCcEEEEecCCcccCC
Q 005424 117 KKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSAN 165 (697)
Q Consensus 117 k~~~~vWv~~~~~~~~~~~v~s~~~~~v~v~~~~g~~~~v~~~~l~~~n 165 (697)
+.|..|.+...+|.|-+|+|+....++..|+.+|..+..+..+++..+.
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 3566999999999999999999889999999999999999888877653
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=79.57 E-value=1.1 Score=44.14 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|+|.|..||||++-++.+.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998876
No 267
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=79.56 E-value=0.89 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4578899999999999998887554
No 268
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.46 E-value=0.95 Score=48.18 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|...++.=.+.|.+.|.|.+|||||+..+.|+..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577777666788999999999999999999998874
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=79.44 E-value=2 Score=47.48 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.+..|+++|.+|+|||+++..+..+|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 468899999999999999999999998644
No 270
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=79.28 E-value=1.3 Score=46.02 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 246 REMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 246 ~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
..+...-..+.+.+.|+||||||+..+.++
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 444445567899999999999999999987
No 271
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.22 E-value=1.5 Score=42.52 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+.++|.|++|+|||..+..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877665433
No 272
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=79.22 E-value=0.87 Score=49.43 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.|...+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 346889999999999999999887654
No 273
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.15 E-value=1 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|.|++|+|||..++.+.+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999999999988765
No 274
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.06 E-value=0.7 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 34578899999999999998887543
No 275
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=79.00 E-value=2 Score=46.88 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
+.++|.|..|+|||+.++.++++|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999987654
No 276
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.91 E-value=1.5 Score=44.48 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~y 277 (697)
+.++|+|+.|.|||+.++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999999988765
No 277
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=78.79 E-value=1.2 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.--|.|+|-+|||||+.++.+-+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 278
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=78.62 E-value=1.1 Score=49.19 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.|...++.=.+.|.+.|.|.||||||+..+.|..++
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 577778666789999999999999999999998875
No 279
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.56 E-value=0.69 Score=51.19 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
...+.+.|.|.||||||+.+|.+..++...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 46788999999999999999999998765443
No 280
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.52 E-value=6.1 Score=33.10 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=43.1
Q ss_pred ccccccCcEEEEecCCCCEEEEEEEeeeC-CeeEEEcCCCcEEEEecCCcccCCCC
Q 005424 113 SYAGKKKLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANPD 167 (697)
Q Consensus 113 ~~~~k~~~~vWv~~~~~~~~~~~v~s~~~-~~v~v~~~~g~~~~v~~~~l~~~np~ 167 (697)
++..+.|..|--.-.++.|-+|+|.++.+ +.++|...|+...+|+..++.++.+.
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 34455566676666688999999999976 77889988888888998888887654
No 281
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=78.49 E-value=0.77 Score=49.81 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
....-|+|+|-||||||+.++.+.+.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999886643
No 282
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.40 E-value=3.4 Score=38.95 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHH
Q 005424 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (697)
Q Consensus 212 Pyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 273 (697)
.|..+++ ++...+.........|.-| =..|+..+... +.+++.+++|+|||.+.-.
T Consensus 4 ~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 4 EFEDYCL-KRELLMGIFEMGWEKPSPI--QEESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SGGGSCC-CHHHHHHHHTTTCCSCCHH--HHHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 3555554 4555555554444334433 34566666543 5699999999999977543
No 283
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=78.23 E-value=0.82 Score=51.73 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=24.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.+.|.|+||||||+..|.++..+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999999987653
No 284
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=77.95 E-value=1.3 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
++.--|+|.|..||||++-++.+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578899999999999999998876
No 285
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=77.89 E-value=3.1 Score=42.82 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=39.9
Q ss_pred ecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 210 VNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
.++|..+++ ++...+.........|..+ =..|+..++.. .++.+++.+++|+|||...-..+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~--Q~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKI--QERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 367777775 4555555544444444444 34666666554 44789999999999998765443
No 286
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=77.82 E-value=1.6 Score=50.30 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+...|+|+|-||||||+.++.+-+.|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999854
No 287
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=77.75 E-value=1.1 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+|+|.|++|.|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999888554
No 288
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=77.60 E-value=2.1 Score=47.01 Aligned_cols=47 Identities=19% Similarity=0.013 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 235 PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
|....+.-+|...+..-.+-|.+.|.|.||+|||+.++.+.++++.-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778888999999988999999999999999999999999988753
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=77.26 E-value=1.4 Score=49.27 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
+.+.|.|+||||||+..+.+...+..-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 7899999999999999999988765433
No 290
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=77.13 E-value=1.1 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987765
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.02 E-value=1 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
--|+|+|.||||||+.++.+.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468999999999999998887654
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=76.86 E-value=1.3 Score=41.73 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~ 276 (697)
.|+|.|.+|||||+..+.++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999998777653
No 293
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.85 E-value=1.7 Score=51.48 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+..+....+++.|++|+|||..++.+.+.+..
T Consensus 186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34566678999999999999999999998865
No 294
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=76.69 E-value=0.72 Score=49.33 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=21.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34578899999999999998887554
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.59 E-value=1.2 Score=47.11 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=25.8
Q ss_pred HHHHHHhc--CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 244 Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
....++.. ...+.+.|.|++|||||+.+++++..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445433 35789999999999999999988654
No 296
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=76.47 E-value=1.4 Score=43.81 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
--|+|+|.+||||++.++.+.+.+
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 368999999999999999998855
No 297
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.44 E-value=1.1 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=23.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH-HHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il-~yLa~ 280 (697)
.+.+.+.|.|+||||||+.++.++ .-+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999963 44433
No 298
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.25 E-value=0.86 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+.++|.|++|+|||+.++.+.+.+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999988663
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.23 E-value=1.2 Score=47.25 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...|+|+|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999887754
No 300
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=76.17 E-value=2.2 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.++|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999888765
No 301
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.05 E-value=0.77 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456899999999999999999987654
No 302
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=75.95 E-value=1.9 Score=41.94 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 257 IIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
|+|-|--|||||+-++.+.++|...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999987643
No 303
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.82 E-value=1.3 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
-|+|+|.||||||+.++.+.+.+-
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 589999999999999999988764
No 304
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=75.73 E-value=1.3 Score=41.69 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEEeCCCCCChhHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~ 276 (697)
.|+|.|.+|||||+..+.+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999998877643
No 305
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=75.50 E-value=16 Score=30.61 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=44.4
Q ss_pred cccccccCcEEEEecC-CCCEEEEEEEeeeC--CeeEEE-cCCCcEEEEecCCcccCCCCcc
Q 005424 112 TSYAGKKKLQSWFQLP-NGNWELGKILSISG--TESVIS-LPEGKVLKVKSENLVSANPDIL 169 (697)
Q Consensus 112 ~~~~~k~~~~vWv~~~-~~~~~~~~v~s~~~--~~v~v~-~~~g~~~~v~~~~l~~~np~~~ 169 (697)
.++..+.|..|-.+-. ++.|-.|+|.+..+ +.+.|. ++.|..-+|+.++|.+..+..+
T Consensus 6 ~~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 6 SGKVWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAW 67 (78)
T ss_dssp CCCCCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCC
T ss_pred CccCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHh
Confidence 3455566777777764 78899999999865 667777 4679999999999988876544
No 306
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.42 E-value=1.4 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+..|+|.|++|+|||..++.+-+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 55778999999999999999888554
No 307
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=75.27 E-value=11 Score=30.20 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=42.3
Q ss_pred cccCcEEEEecCCCCEEEEEEEeeeC--CeeEEEcCCCcEEEEecCCcccCC
Q 005424 116 GKKKLQSWFQLPNGNWELGKILSISG--TESVISLPEGKVLKVKSENLVSAN 165 (697)
Q Consensus 116 ~k~~~~vWv~~~~~~~~~~~v~s~~~--~~v~v~~~~g~~~~v~~~~l~~~n 165 (697)
.++|..|.+...++.|-+|+|++++. +...|+.+|+....+.-.++++..
T Consensus 4 f~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 4 LWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred cccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 35677899999999999999999754 478999999999999888887654
No 308
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=75.04 E-value=1.2 Score=50.43 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999999886643
No 309
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.01 E-value=1.4 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999987654
No 310
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=74.66 E-value=1.6 Score=43.54 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+-.|.|+|++|||||+.++.+-+.|
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999987766
No 311
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.57 E-value=1.3 Score=50.33 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 457899999999999999999887654
No 312
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.57 E-value=1.5 Score=47.11 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.++.++|.|.+|||||+..+.++..+...+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g 81 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG 81 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478899999999999999988887765533
No 313
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=74.43 E-value=2 Score=48.11 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.....|++.|-+|||||+.++.+.++|-..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345689999999999999999999998654
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=74.43 E-value=1.8 Score=38.79 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.8
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||+..+.++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999877665
No 315
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=74.29 E-value=2.5 Score=42.27 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+-++++|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4578999999999999988777655543
No 316
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.88 E-value=1.6 Score=43.75 Aligned_cols=36 Identities=11% Similarity=0.392 Sum_probs=27.5
Q ss_pred HHHHHHHhcC-ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 243 TAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 243 ~Ay~~m~~~~-~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+.+.+.+.- +.-+|+|.|..|+|||..+..+++++
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555542 23479999999999999999998886
No 317
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=73.86 E-value=14 Score=29.04 Aligned_cols=50 Identities=18% Similarity=0.011 Sum_probs=38.2
Q ss_pred ccCcEEEEec-CCCCEEEEEEEeeeC--CeeEEEc-CCCcEEEEecCCcccCCC
Q 005424 117 KKKLQSWFQL-PNGNWELGKILSISG--TESVISL-PEGKVLKVKSENLVSANP 166 (697)
Q Consensus 117 k~~~~vWv~~-~~~~~~~~~v~s~~~--~~v~v~~-~~g~~~~v~~~~l~~~np 166 (697)
+.|..|-.+- .++.|-.|+|.+..+ +.++|.. +.|..-+|+.++|.+..|
T Consensus 5 ~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 3455666664 478899999999874 7788875 569998999998888754
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.74 E-value=3.2 Score=48.78 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=34.4
Q ss_pred ecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 210 VNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+|||..+++ ++...+........|-.+. ..+....+. .++.++|.|++|||||+....++
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~~lP~~~q---~~~i~~~l~--~~~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRRELPVHAQ---RDEFLKLYQ--NNQIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHTTSGGGGG---HHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCccccCC-CHHHHHHHHHhhcCChHHH---HHHHHHHHh--CCCeEEEECCCCCCHHHHHHHHH
Confidence 577777764 4444444333332232222 233333333 25789999999999999655553
No 319
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=73.64 E-value=2.1 Score=46.93 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=25.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
.....|++.|-+|||||+.++.+.++|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345789999999999999999999988643
No 320
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.52 E-value=4.3 Score=40.27 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHHH-HHHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i-l~yLa~ 280 (697)
..|+..+... +.+++.+++|+|||.+.-.. ++.+..
T Consensus 71 ~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 71 IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 3455555543 56999999999999885443 444443
No 321
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.39 E-value=2 Score=38.26 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|++.|.+|+|||...+.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998877665
No 322
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.36 E-value=3.4 Score=45.06 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..+|++.|++|+|||..++.+-+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36899999999999999999988863
No 323
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.06 E-value=2.6 Score=46.22 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.8
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+....|+++|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999876
No 324
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=72.46 E-value=1.7 Score=40.54 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.2
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|+|.|.+|+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999877664
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=72.34 E-value=1.9 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999866654
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.14 E-value=2.2 Score=37.98 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+....++
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998866654
No 327
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.14 E-value=0.7 Score=52.28 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456899999999999999988776543
No 328
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=72.09 E-value=0.8 Score=51.98 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.++.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887654
No 329
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=71.90 E-value=2 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
++.+.+-|.|++|||||+..|.+...+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 457889999999999999999987654
No 330
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.84 E-value=9.2 Score=36.44 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=36.5
Q ss_pred cCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHH
Q 005424 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 211 NPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
+.|+.+++ ++...+.........|..|. ..|+..+... ..+++.+++|+|||.+.-..+-
T Consensus 14 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLL-KPELLRAIVDCGFEHPSEVQ--HECIPQAILG---MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCC-CHHHHHHHHHTTCCCCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCCchhhhhhHHHH
Confidence 45776665 45555554444443454443 3555555543 3499999999999987655443
No 331
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=71.74 E-value=2 Score=47.24 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceeE--EEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQS--IIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQs--IiiSGESGAGKTe~tK~il~y 277 (697)
+.... |.|.|+||||||+..+.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44566 899999999999999888653
No 332
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.47 E-value=2.4 Score=50.11 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=23.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+++|.|++|+|||+.++.+-+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999988774
No 333
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=71.35 E-value=2.4 Score=47.16 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+..|+|.|++|+|||..+|.+...+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999987754
No 334
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=71.21 E-value=2.1 Score=44.23 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.+.+.|+||||||+..+.+..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 3467899999999999998887753
No 335
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.17 E-value=1.9 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.6
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+|+|.|++|+|||..++.+.+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887764
No 336
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=71.16 E-value=2.1 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
...|.|.|+||||||+..+.++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 347889999999999999888654
No 337
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.08 E-value=2.3 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il~yLa 279 (697)
++++.|++|.|||+.++.+-+.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999988773
No 338
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.94 E-value=3.8 Score=42.54 Aligned_cols=65 Identities=18% Similarity=0.361 Sum_probs=36.5
Q ss_pred ecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHH-HHHHH
Q 005424 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (697)
Q Consensus 210 VNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-il~yL 278 (697)
+.+|..+++ ++...+.........|..+ =..|+..+... .++.+++.+++|+|||...-. +++.+
T Consensus 24 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 24 VKSFEELRL-KPQLLQGVYAMGFNRPSKI--QENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp SSCTGGGTC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCCHhhCCC-CHHHHHHHHHcCCCCCCHH--HHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 344555443 3333433333333334433 23456555543 467899999999999988633 34443
No 339
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.83 E-value=2.4 Score=37.86 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.9
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|++.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999998876654
No 340
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=70.82 E-value=2 Score=49.19 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.3
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..+.+.|.|+||||||+..|.+.-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999887654
No 341
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=70.73 E-value=2.5 Score=37.55 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998865554
No 342
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=70.68 E-value=2.3 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.7
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
-.|++.|.+|+|||+..+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999877764
No 343
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.67 E-value=4.9 Score=42.18 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHH-hcCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 005424 242 DTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (697)
Q Consensus 242 ~~Ay~~m~-~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~~ 283 (697)
..+...+. ...+...|.|+|..|||||+.++.+...+...++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 33444432 3456789999999999999999999988876543
No 344
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=70.52 E-value=3.3 Score=44.45 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=26.7
Q ss_pred chhH-HHHHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 236 HVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 236 Hifa-vA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
.||. ++.......+..+.|-+|+-.|.+|||||.++
T Consensus 66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 4554 23444455566688999999999999999885
No 345
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=70.40 E-value=2.3 Score=39.17 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.0
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
--|++.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999877764
No 346
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.37 E-value=2.4 Score=47.25 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.....++|.|++|||||+.++.++..++
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999877654
No 347
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.28 E-value=2.3 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.....|+|.|+||+|||+.++.+...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999988664
No 348
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.14 E-value=2.6 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+++.|++|+|||..++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 589999999999999999886654
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=70.10 E-value=2.5 Score=39.16 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.7
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+....++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 379999999999998876654
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=70.07 E-value=2.6 Score=37.86 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+..+.++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468999999999998876554
No 351
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=70.02 E-value=3.7 Score=46.52 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=26.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.++.++|+|..|+|||++.+.++..+...+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 357899999999999999999999988754
No 352
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=70.00 E-value=2.3 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.|.|.||||||+..+.++..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 5679999999999999998888643
No 353
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=69.92 E-value=13 Score=32.09 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.6
Q ss_pred CcEEEEecCCCCEEEEEEEeeeC-CeeEEEcCCCcEEEEecCCcccCCC
Q 005424 119 KLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (697)
Q Consensus 119 ~~~vWv~~~~~~~~~~~v~s~~~-~~v~v~~~~g~~~~v~~~~l~~~np 166 (697)
++..| .++.|-+|+|.++.+ +..+|...||.+.+++..++.|+..
T Consensus 28 VlArW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 28 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEEEe---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 33456 688899999999976 6788998899999999999987654
No 354
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=69.92 E-value=3.1 Score=40.88 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.+.-.++++|-.|+|||+.+..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4457788999999999999999999987
No 355
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=69.77 E-value=2.7 Score=37.66 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||...+.++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999998876653
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=69.72 E-value=1.5 Score=41.44 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
.....|+|.|.+|||||+..+.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 445789999999999998876653
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=69.67 E-value=2.6 Score=37.56 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|++.|.+|+|||+..+.++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998866654
No 358
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=69.65 E-value=3.9 Score=46.54 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHc
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~ 281 (697)
+..++|+|..|+|||++.+.++..|..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999865
No 359
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=69.60 E-value=2.7 Score=39.87 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.9
Q ss_pred hcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+..+.=.|++.|.+|+|||.....++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 33445679999999999998876654
No 360
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=69.50 E-value=4 Score=42.47 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.+.+.++..++|++|+.|.|||+.++.+.+-
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3455556566789999999999999999998774
No 361
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=69.44 E-value=2 Score=46.70 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHhc--CceeEEEEeCCCCCChhHHHHHHH
Q 005424 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 244 Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~il 275 (697)
.+..++.. ...+.++|.|+||+|||+.++.++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 34445433 256889999999999999988664
No 362
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.41 E-value=1.9 Score=45.99 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.4
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
++..-|+|+|.+|||||+.++.+.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999998887653
No 363
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=69.35 E-value=1.9 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.0
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.-+=.|+|.|+||||||+..+.+..
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999988754
No 364
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=69.35 E-value=2.4 Score=39.77 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=18.0
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+.+.+....+.=-|++.|.+|+|||...+.+.
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHh
Confidence 33333233334479999999999999877654
No 365
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.28 E-value=2.1 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.2
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.-+=.|.|.|+||||||+..+.++.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhC
Confidence 3455679999999999998887754
No 366
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=69.19 E-value=2.4 Score=38.36 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~ 276 (697)
.=.|++.|.+|+|||+..+.++.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999998766543
No 367
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.13 E-value=3 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
-++++.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 589999999999999999887765
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.12 E-value=1.1 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..-|+|.|-.|||||+.++.+.++|
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999998887665
No 369
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=68.76 E-value=2.7 Score=37.58 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
-.|++.|.+|+|||.....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998776654
No 370
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=68.74 E-value=6.2 Score=41.53 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHh-cCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 239 AITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 239 avA~~Ay~~m~~-~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
..+......+.. .+..-.|+|+|..|+|||+.+..+..+++..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 345454555532 34567899999999999999999998887543
No 371
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=68.61 E-value=3.4 Score=44.26 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....++|.|++|+|||+.+..++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999988776543
No 372
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=68.61 E-value=3 Score=40.78 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yLa 279 (697)
.-|+|-|--|||||+.++.+.++|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3588999999999999999999884
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=68.40 E-value=3.7 Score=37.19 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=18.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
..=.|++.|.+|+|||.....++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999876654
No 374
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=68.35 E-value=18 Score=30.58 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred ccCcEEEEecCCCCEEEEEEEeee--CCeeEEEcCCCcEEEEecCCcccC
Q 005424 117 KKKLQSWFQLPNGNWELGKILSIS--GTESVISLPEGKVLKVKSENLVSA 164 (697)
Q Consensus 117 k~~~~vWv~~~~~~~~~~~v~s~~--~~~v~v~~~~g~~~~v~~~~l~~~ 164 (697)
.+|.-|.+...+|.|-+|+|++++ ++...|+.+|+....+.-.+++++
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
Confidence 356689999999999999999875 677899999999999988877653
No 375
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.29 E-value=2.4 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|+|.|++|+|||..+|.+...+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999887654
No 376
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.18 E-value=3.4 Score=42.88 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.++|.|.+|+|||..+..+....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999887776554
No 377
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=67.96 E-value=3.4 Score=38.30 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHhcCceeEEEEeCCCCCChhHHHHHHHH
Q 005424 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 248 m~~~~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
|-.....-.|++.|.+|+|||+....++.
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 33344556799999999999998766543
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=67.75 E-value=3 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||.....++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999866654
No 379
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.73 E-value=3.1 Score=41.25 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..|+..+...+ .+++.|+.|+|||..+..++..+
T Consensus 99 ~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 99 EKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 34555555442 38999999999999987776654
No 380
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=67.72 E-value=3 Score=37.62 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.7
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+..+.++
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876654
No 381
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=67.67 E-value=2.5 Score=48.43 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=22.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 346789999999999999999886544
No 382
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.41 E-value=3.4 Score=43.84 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....++|.|++|+|||+.+.+++..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 457899999999999999999987766543
No 383
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=67.40 E-value=5.3 Score=38.27 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=33.9
Q ss_pred CCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHH
Q 005424 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (697)
Q Consensus 212 Pyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 273 (697)
.|..+++ ++...+..+......|.-+ =..|+..+... +.+++.+++|+|||.+.-.
T Consensus 5 ~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 5 QFTRFPF-QPFIIEAIKTLRFYKPTEI--QERIIPGALRG---ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CGGGSCC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHHT---CCEEEECCSSHHHHHHHHH
T ss_pred CHhhCCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEECCCCChHHHHHHH
Confidence 4555553 4555555554444344433 34555555543 5689999999999987443
No 384
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=67.40 E-value=3 Score=38.55 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=18.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
....|+|.|.+|+|||+..+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999998776664
No 385
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=67.37 E-value=2.8 Score=37.55 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.9
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|++.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999998876654
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=67.32 E-value=3.1 Score=38.13 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~ 276 (697)
=-|++.|.+|+|||.....++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999998776654
No 387
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=67.29 E-value=3.2 Score=37.06 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998876654
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=67.26 E-value=3.2 Score=37.30 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=17.4
Q ss_pred eeEEEEeCCCCCChhHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~i 274 (697)
.=.|++.|.+|+|||.....+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 346999999999999886665
No 389
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.11 E-value=3 Score=45.69 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
...|+|.|.+|+|||+++..+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999998654
No 390
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=67.07 E-value=3.1 Score=37.74 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.5
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
+.--|++.|.+|+|||.....++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34569999999999998876653
No 391
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=67.00 E-value=3.1 Score=37.53 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 358999999999998776553
No 392
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=66.99 E-value=3.2 Score=37.90 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=17.1
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|++.|.+|+|||+....++
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998876664
No 393
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.88 E-value=3.1 Score=39.52 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
..-.|++.|.+|+|||.....+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999988776643
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=66.82 E-value=3.3 Score=37.01 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.6
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAM 275 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il 275 (697)
|++.|.+|+|||.....++
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999877664
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=66.77 E-value=3.2 Score=37.92 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|+|.|.+|+|||.....++
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999998766554
No 396
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=66.63 E-value=20 Score=30.93 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=38.9
Q ss_pred ccCcEEEEec-CCCCEEEEEEEeeeC--CeeEEEc-CCCcEEEEecCCcccCCCCcc
Q 005424 117 KKKLQSWFQL-PNGNWELGKILSISG--TESVISL-PEGKVLKVKSENLVSANPDIL 169 (697)
Q Consensus 117 k~~~~vWv~~-~~~~~~~~~v~s~~~--~~v~v~~-~~g~~~~v~~~~l~~~np~~~ 169 (697)
+.|..|-..- .++.|-.|+|.++.+ +.++|.. +.|..-+|+.++|.|..+...
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~ 68 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVA 68 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC----
T ss_pred CCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChhhc
Confidence 4455666665 488899999999875 7787775 579998999999998766543
No 397
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=66.37 E-value=3.3 Score=38.25 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.9
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999877664
No 398
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=66.34 E-value=6.2 Score=41.66 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.2
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 57899999999999999999998876543
No 399
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.28 E-value=4.9 Score=43.00 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.6
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCceEE
Confidence 688999999999999999885
No 400
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.94 E-value=8.3 Score=40.06 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHH-HHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-il~yL 278 (697)
..|+..+... +.+++.+++|+|||...-. +++.+
T Consensus 68 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 68 QRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp HHHHHHHHTT---CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred HHHhHHHhCC---CCEEEECCCCCcccHHHHHHHHHHH
Confidence 3555555543 3499999999999988433 34443
No 401
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.94 E-value=3.6 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=20.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.++|.|++|+|||..+..+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999998877654
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=65.93 E-value=3.4 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=17.6
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998876655
No 403
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=65.91 E-value=2.7 Score=38.70 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.9
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|++.|.+|+|||+....++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998876653
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=65.90 E-value=2.5 Score=47.59 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=21.9
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|+||||||+..|.+...+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999998886543
No 405
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=65.76 E-value=3.9 Score=49.20 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCChhHHHHHH--HHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIA--MQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~i--l~yLa~~~ 282 (697)
..+.++|+|.+|||||+..|.+ +.+++..|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999988 55555544
No 406
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=65.67 E-value=2.9 Score=39.42 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
..|+..++. ++.+++.+++|+|||..+-.++..+.
T Consensus 39 ~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 39 MEVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp HHHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355555554 35699999999999999887776554
No 407
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=65.64 E-value=20 Score=29.52 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=33.9
Q ss_pred CCCCEEEEEEEeeeC-CeeEEEcCCCcEEEEecCCcccCCC
Q 005424 127 PNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (697)
Q Consensus 127 ~~~~~~~~~v~s~~~-~~v~v~~~~g~~~~v~~~~l~~~np 166 (697)
.++.|-+|+|.++.+ +..+|...+|.+.+|+..++.++..
T Consensus 18 ~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 18 SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 788899999999976 5788888889999999999887654
No 408
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=65.62 E-value=3.5 Score=37.41 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||.....++
T Consensus 11 ~~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999998766653
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=65.58 E-value=3.6 Score=37.42 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=.|++.|.+|+|||.....++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468999999999998866654
No 410
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=65.56 E-value=3.5 Score=38.53 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
.+.=-|+|.|.+|+|||.....++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999998876554
No 411
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=65.42 E-value=3.2 Score=40.56 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=-|+|.|.+|+|||+..+.++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 4469999999999999877765
No 412
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=65.42 E-value=4.3 Score=38.82 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=19.3
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.+-++++|..|+|||+.+..++.-+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999985554433
No 413
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=65.42 E-value=3.9 Score=44.59 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
..+.|+|.|.+|+|||+.+..+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999988877653
No 414
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=65.39 E-value=3.2 Score=37.56 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||.....++
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998876654
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.39 E-value=7.2 Score=43.68 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.3
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....|+|.|..|+|||+++..+..+|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999998654
No 416
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=65.10 E-value=3.2 Score=38.01 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||...+.++
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998876653
No 417
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.09 E-value=5.7 Score=43.26 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 236 HifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
.||.-........+ ++.|-||+-.|.+|||||.++
T Consensus 124 ~Vf~~v~~lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 124 DVFKEVGQLVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 35543333333333 788999999999999999997
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=64.89 E-value=3.6 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|+|.|.+|+|||+....++
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999866654
No 419
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=64.87 E-value=4.9 Score=42.89 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 578999999999999999986
No 420
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.83 E-value=5.2 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEEECCCCCCCceEe
Confidence 678999999999999999885
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=64.64 E-value=3.3 Score=37.34 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876554
No 422
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=64.54 E-value=4.9 Score=37.80 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=30.5
Q ss_pred hhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHH-HHHHHHH
Q 005424 221 NYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYL 278 (697)
Q Consensus 221 ~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t-K~il~yL 278 (697)
+...+..+......|.-| =..|+..+... +.+++.+++|+|||.+. ..+++.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~--Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 10 PEILEALHGRGLTTPTPI--QAAALPLALEG---KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp HHHHHHHHHTTCCSCCHH--HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCHH--HHHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 444444444333334333 34555555543 45999999999999874 3344444
No 423
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=64.40 E-value=3.7 Score=36.89 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|++.|.+|+|||.....++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998876653
No 424
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=64.31 E-value=2 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.2
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 56888999999999999998765
No 425
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.27 E-value=4.6 Score=46.45 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=38.5
Q ss_pred CccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHH-HHHHHHHH
Q 005424 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLA 279 (697)
Q Consensus 213 yk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t-K~il~yLa 279 (697)
|..+++ .+...+.++.... .+.+.+=..|+.....+ ++.++++|++|||||... -.+++.+.
T Consensus 3 f~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~ 65 (720)
T 2zj8_A 3 VDELRV-DERIKSTLKERGI--ESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRIL 65 (720)
T ss_dssp GGGCCS-CHHHHHHHHHTTC--CBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred HhhcCC-CHHHHHHHHHCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHH
Confidence 344442 4555555555333 34455555666653333 688999999999999988 44555655
No 426
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.97 E-value=3.8 Score=40.04 Aligned_cols=19 Identities=32% Similarity=0.435 Sum_probs=15.6
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-++|+|..|||||..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4689999999999986443
No 427
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=63.92 E-value=4 Score=37.83 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=18.1
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=.|++.|.+|+|||.....++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998766654
No 428
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=63.86 E-value=10 Score=39.25 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=35.2
Q ss_pred cCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHH
Q 005424 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 211 NPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+.|..+++ ++...+.........|..|. ..|+..+... +.+++.+++|+|||...-..+
T Consensus 21 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 21 NTFEDFYL-KRELLMGIFEAGFEKPSPIQ--EEAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred CChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 45666665 34444444433333344443 3555556543 449999999999998765443
No 429
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=63.74 E-value=3.1 Score=38.53 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.-.|++.|.+|+|||+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3569999999999999877765
No 430
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=63.73 E-value=4 Score=37.72 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.1
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|+|.|.+|+|||.....++
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999998876654
No 431
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=63.71 E-value=4 Score=37.87 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|+|.|.+|+|||.....++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 58999999999998766554
No 432
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=63.69 E-value=5.6 Score=42.32 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=24.8
Q ss_pred chhHH-HHHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 236 Hifav-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
.||.- +.......+ ++.|-||+-.|.+|||||.++
T Consensus 66 ~vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 66 AVYQACVQPLLEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTHHHHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhcCeeEEEecccCCCceEee
Confidence 45543 233333333 678999999999999999985
No 433
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=63.46 E-value=4.1 Score=37.10 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=17.1
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998876543
No 434
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=63.41 E-value=6.2 Score=42.61 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=33.6
Q ss_pred cCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHH
Q 005424 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (697)
Q Consensus 211 NPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 272 (697)
.+|..+++ ++...+.........| +.+=..|+..++.. .++.+|+.|++|||||...-
T Consensus 92 ~~f~~~~l-~~~l~~~l~~~g~~~p--~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 92 KSFEELRL-KPQLLQGVYAMGFNRP--SKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCSGGGTC-CHHHHHHHHHTTCCSC--CHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHH
T ss_pred CCHHHcCC-CHHHHHHHHHcCCCCC--CHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHH
Confidence 34444443 3333333333333223 33345566666553 46899999999999998843
No 435
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=63.41 E-value=5.1 Score=43.02 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=19.3
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCEEEEEeCCCCCCccEEe
Confidence 678999999999999999885
No 436
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=63.36 E-value=6.9 Score=42.94 Aligned_cols=58 Identities=19% Similarity=0.053 Sum_probs=45.7
Q ss_pred EEecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 208 VAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 208 IaVNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
-.+||...+++- .-...+.-+|...|.--.+-|-++|-|.+|+|||+.++.|.+..+.
T Consensus 144 ~Pi~P~~R~~le---------------~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 144 TPDYPRERFILE---------------TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEECCCSBCCCC---------------CSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCchhhcccc---------------ccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 456888777541 0134567788888888888999999999999999999999888764
No 437
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=63.26 E-value=3.3 Score=37.08 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.9
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-|++.|.+|+|||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3899999999999876654
No 438
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=63.23 E-value=3.2 Score=38.05 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
.|++.|.+|+|||.....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38899999999998876654
No 439
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=63.00 E-value=34 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=37.9
Q ss_pred cccCcEEEEec-CCCCEEEEEEEeeeC--CeeEEEc-CCCcEEEEecCCcccCC
Q 005424 116 GKKKLQSWFQL-PNGNWELGKILSISG--TESVISL-PEGKVLKVKSENLVSAN 165 (697)
Q Consensus 116 ~k~~~~vWv~~-~~~~~~~~~v~s~~~--~~v~v~~-~~g~~~~v~~~~l~~~n 165 (697)
.+.|..|-..- .++.|-.|+|.++.+ +.+.|.. +.|+.-+|+.++|.+.+
T Consensus 9 ~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 9 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE 62 (64)
T ss_dssp CCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCS
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCC
Confidence 34566777775 588899999999875 6777775 57888888888877643
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=62.98 E-value=1.7 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.5
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
+..|.|-|.|+||||||+..+.+++++
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 346889999999999999999998765
No 441
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=62.98 E-value=4.2 Score=36.95 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 458999999999998876554
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=62.96 E-value=4.2 Score=37.82 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=17.4
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|+|.|.+|+|||.....++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 368999999999999876654
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=62.91 E-value=4.2 Score=37.98 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=-|+|.|.+|+|||.....++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468999999999998766654
No 444
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=62.79 E-value=3.9 Score=36.99 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.3
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-|++.|.+|+|||.....+
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999876655
No 445
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=62.78 E-value=6.4 Score=42.40 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=24.9
Q ss_pred chhHH-HHHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 236 Hifav-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
.||.- +.......+ ++.|-||+-.|.+|||||.++
T Consensus 83 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 45643 333333333 578999999999999999874
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=62.72 E-value=4.1 Score=36.86 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=.|++.|.+|+|||.....+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3468999999999998776654
No 447
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.66 E-value=5.4 Score=42.69 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 678999999999999999885
No 448
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.65 E-value=5.9 Score=42.58 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.4
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEeecCCCCCCceEE
Confidence 678999999999999999885
No 449
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=62.39 E-value=5.3 Score=39.70 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.1
Q ss_pred eEEEEeCC-CCCChhHHHHHHHHHHHHcC
Q 005424 255 QSIIISGE-SGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 255 QsIiiSGE-SGAGKTe~tK~il~yLa~~~ 282 (697)
++|+|+|- ||+|||..+-.+++.|...|
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 68999887 89999999999999998765
No 450
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=62.36 E-value=6.9 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred hcCceeEEEEeCCCCCChhHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~t 271 (697)
-++.|-||+-.|.+|||||.++
T Consensus 133 l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hcCCceEEEEeCCCCCCCCEEe
Confidence 3688999999999999999886
No 451
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=62.33 E-value=3.5 Score=40.78 Aligned_cols=22 Identities=27% Similarity=0.589 Sum_probs=18.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=.|+|.|.+|||||+.+..++
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999877765
No 452
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=62.16 E-value=6.9 Score=37.36 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCceeEEEEeCCCCCChhHH-HHHHHHHH
Q 005424 242 DTAIREMIRDEVNQSIIISGESGAGKTET-AKIAMQYL 278 (697)
Q Consensus 242 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~-tK~il~yL 278 (697)
..|+..+... +.+++.+++|+|||.+ .-.+++.+
T Consensus 42 ~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 42 QRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3455555543 4599999999999988 34444544
No 453
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.05 E-value=5.5 Score=42.45 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.4
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
....|+|.|++|+|||+.+.+++..++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g 91 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 91 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 457899999999999999999988776543
No 454
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=62.01 E-value=6.8 Score=41.99 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=24.5
Q ss_pred chhHHH-HHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 236 HVYAIT-DTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 236 HifavA-~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
.||.-. .......+ ++.|-||+-.|.+|||||.++
T Consensus 71 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 71 DVYRSVVCPILDEVI-MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhHHHHh-CCCceEEEEeCCCCCCCceEE
Confidence 455432 23333333 578999999999999999875
No 455
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=61.88 E-value=18 Score=30.76 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=41.4
Q ss_pred ccccccCcEEEEec-CCCCEEEEEEEeeeC-CeeEEE-cCCCcEEEEecCCcccCCC
Q 005424 113 SYAGKKKLQSWFQL-PNGNWELGKILSISG-TESVIS-LPEGKVLKVKSENLVSANP 166 (697)
Q Consensus 113 ~~~~k~~~~vWv~~-~~~~~~~~~v~s~~~-~~v~v~-~~~g~~~~v~~~~l~~~np 166 (697)
++..+.|..|=+.. .++.|..|+|.+..+ +.+.|. ++.|...+|+.+++.+..+
T Consensus 25 ~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 25 DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence 45566777777764 578899999999865 467766 5789999999988887654
No 456
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=61.71 E-value=9.1 Score=39.44 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcC--ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 241 TDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 241 A~~Ay~~m~~~~--~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
.-.+....+..+ +.-+|++.|..|+|||..++.+++++
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334455555543 24589999999999999999887753
No 457
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=61.66 E-value=3.3 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yL 278 (697)
|.|.|+||||||+..+.+...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999999887653
No 458
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.61 E-value=13 Score=36.16 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=38.1
Q ss_pred ecCCccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHH-HHHHHH
Q 005424 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (697)
Q Consensus 210 VNPyk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-il~yLa 279 (697)
+..|..+++ ++...+.........|. .+=..|+..+... +.+++.+.+|+|||.+.-. +++++.
T Consensus 28 ~~~f~~~~l-~~~l~~~l~~~g~~~~~--~~Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 28 VLNFYEANF-PANVMDVIARQNFTEPT--AIQAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CSSTTTTTC-CHHHHHHHHTTTCCSCC--HHHHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCHhhcCC-CHHHHHHHHHCCCCCCC--HHHHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 344555443 45555555544443343 3344566666543 4699999999999998544 345554
No 459
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.55 E-value=6.1 Score=42.30 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=25.5
Q ss_pred CchhH-HHHHHHHHHHhcCceeEEEEeCCCCCChhHHH
Q 005424 235 PHVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 235 PHifa-vA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 271 (697)
-.||. ++.......+ ++.|-||+-.|.+|||||.++
T Consensus 62 ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCcceEEEECCCCCCcceEe
Confidence 34565 2333333333 678999999999999999875
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=61.55 E-value=4.6 Score=37.15 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=17.3
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=.|++.|.+|+|||.....++
T Consensus 16 ~~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998766553
No 461
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.38 E-value=5.8 Score=42.55 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCceEEEEECCCCCCCceEe
Confidence 688999999999999999885
No 462
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=61.36 E-value=5.8 Score=45.44 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=38.8
Q ss_pred CccCCCCChhHHHhhccCCCCCCchhHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHH-HHHHHHH
Q 005424 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (697)
Q Consensus 213 yk~lpiY~~~~~~~Y~~~~~~~PHifavA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-il~yLa~ 280 (697)
|..+++ .+...+.++.... .+.+.+=..|+..+.. .++.+|++|++|||||...-. +++.+..
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~--~~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLL--EGNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTT--TTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhc--CCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 444442 4555555554332 3445555566665333 368899999999999999844 4555543
No 463
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=61.28 E-value=6.5 Score=42.25 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.3
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred cCCeeEEEEeCCCCCCCceEe
Confidence 678999999999999999875
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=61.24 E-value=4.7 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-|+|.|.+|+|||.....++
T Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999876653
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=61.23 E-value=3.7 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|.+|||||+..|.+...+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999886543
No 466
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=61.01 E-value=6.6 Score=39.91 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=27.3
Q ss_pred HhcCceeEEEEeCCCCCChhHHHHHHHHHHHHcC
Q 005424 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 249 ~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~~~ 282 (697)
...+..+.|.|+|-.|.|||+.+-.+-.+|+..+
T Consensus 36 ~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G 69 (307)
T 3end_A 36 DKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG 69 (307)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred cccCCceEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence 3455678999999999999999999999999764
No 467
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=60.94 E-value=4.3 Score=46.49 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il~yL 278 (697)
+.+.|.|+||||||+..|.+...+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 568999999999999988886543
No 468
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=60.89 E-value=4.2 Score=37.55 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||...+.++
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 458999999999998877654
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=60.82 E-value=4.8 Score=37.76 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=18.1
Q ss_pred ceeEEEEeCCCCCChhHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il 275 (697)
..=-|+|.|.+|+|||.....++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 34579999999999998776654
No 470
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=60.77 E-value=8.2 Score=39.76 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHh-------cCceeEEEEeCC-CCCChhHHHHHHHHHHHHcC
Q 005424 239 AITDTAIREMIR-------DEVNQSIIISGE-SGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 239 avA~~Ay~~m~~-------~~~nQsIiiSGE-SGAGKTe~tK~il~yLa~~~ 282 (697)
..+.+||+.+.. .+..+.|.|+|. .|.|||+.+-.+-..|+..+
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G 133 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD 133 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCC
Confidence 455677777742 355688888775 69999999999999998754
No 471
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=60.74 E-value=3.7 Score=42.63 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~y 277 (697)
..+.++|.|++|+|||..+..+...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4578999999999999998877543
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=60.71 E-value=3.7 Score=46.92 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.0
Q ss_pred ceeEEEEeCCCCCChhHHHHHHHHHH
Q 005424 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (697)
Q Consensus 253 ~nQsIiiSGESGAGKTe~tK~il~yL 278 (697)
..+.+.|.|++|||||+..|.+...+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999886543
No 473
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=60.64 E-value=2.2 Score=42.79 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il~yLa 279 (697)
+.|.|+||||||+..+.|.-.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 35889999999999998876554
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=60.55 E-value=8.8 Score=35.35 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.5
Q ss_pred cCceeEEEEeCCCCCChhHHHHHHH
Q 005424 251 DEVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~tK~il 275 (697)
.++.=.|++.|.+|+|||.....++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh
Confidence 4556789999999999998876654
No 475
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=60.35 E-value=4.4 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
...+.++|+|++|||||+..|.+.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3568999999999999999999865
No 476
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.29 E-value=4.4 Score=41.76 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHhc--CceeEEEEeCCCCCChhHHHHHHHH
Q 005424 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQ 276 (697)
Q Consensus 244 Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~il~ 276 (697)
....++.. ...+.++|.|++|+|||..+..+..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444432 3467899999999999998877654
No 477
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=60.26 E-value=4.1 Score=42.27 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.8
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-.+|.|++|||||...+.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHH
Confidence 6789999999999987774
No 478
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=60.10 E-value=6.6 Score=41.89 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.2
Q ss_pred hcCceeEEEEeCCCCCChhHHH
Q 005424 250 RDEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 250 ~~~~nQsIiiSGESGAGKTe~t 271 (697)
-++.|-||+-.|.+|||||.++
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEe
Confidence 3688999999999999999997
No 479
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.09 E-value=2.3 Score=52.97 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=24.7
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.+.|.|+||||||+..+.+++++-
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3568999999999999999999998764
No 480
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=60.01 E-value=4.7 Score=37.67 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.2
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIA 274 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~i 274 (697)
-|+|.|.+|+|||.....+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999876654
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=59.99 E-value=4.2 Score=43.26 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.3
Q ss_pred EEEEeCCCCCChhHHHHHHH
Q 005424 256 SIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 256 sIiiSGESGAGKTe~tK~il 275 (697)
-.+|+|++|||||+....|.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999998875543
No 482
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.99 E-value=5.9 Score=43.28 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.6
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCeeEe
Confidence 688999999999999999986
No 483
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=59.74 E-value=5.4 Score=37.68 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHhcCceeEEEEeCCCCCChhHHHHHH
Q 005424 244 AIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 244 Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i 274 (697)
+++.+....+.=-|++.|.+|+|||...+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHH
Confidence 3444433334446999999999999987765
No 484
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.72 E-value=8.3 Score=37.59 Aligned_cols=27 Identities=37% Similarity=0.472 Sum_probs=19.6
Q ss_pred HHHHHHHhcCceeEEEEeCCCCCChhHHHH
Q 005424 243 TAIREMIRDEVNQSIIISGESGAGKTETAK 272 (697)
Q Consensus 243 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 272 (697)
.|+..++.. +.+++.+++|+|||.+.-
T Consensus 59 ~ai~~i~~~---~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 59 RAIIPCIKG---YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp HHHHHHHTT---CCEEECCCSSHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCCcHHHHHH
Confidence 455555543 459999999999998743
No 485
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=59.72 E-value=5.2 Score=36.70 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=16.0
Q ss_pred eeEEEEeCCCCCChhHHHH
Q 005424 254 NQSIIISGESGAGKTETAK 272 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK 272 (697)
.=-|++.|.+|+|||...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 3468999999999998854
No 486
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=59.70 E-value=12 Score=38.05 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHh-------cCceeEEEEeC-CCCCChhHHHHHHHHHHHHcC
Q 005424 239 AITDTAIREMIR-------DEVNQSIIISG-ESGAGKTETAKIAMQYLAALG 282 (697)
Q Consensus 239 avA~~Ay~~m~~-------~~~nQsIiiSG-ESGAGKTe~tK~il~yLa~~~ 282 (697)
+.+.+||+.+.. .+..+.|.|+| ..|.|||+.+-.+-..|+..+
T Consensus 60 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G 111 (271)
T 3bfv_A 60 SPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAG 111 (271)
T ss_dssp SHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCC
Confidence 455677777653 34567888875 579999999999999998754
No 487
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=59.68 E-value=5.2 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
...=-|++.|.+|+|||.....++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 344579999999999999866554
No 488
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=59.67 E-value=4.6 Score=36.83 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCChhHHHHHHH
Q 005424 255 QSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 255 QsIiiSGESGAGKTe~tK~il 275 (697)
=-|++.|.+|+|||.....++
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 468999999999998866654
No 489
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=59.65 E-value=5.6 Score=42.51 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 678999999999999999886
No 490
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=59.63 E-value=4.3 Score=39.40 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.5
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 005424 257 IIISGESGAGKTETAKIAM 275 (697)
Q Consensus 257 IiiSGESGAGKTe~tK~il 275 (697)
|+|+|-+|||||+-+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999877653
No 491
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=59.42 E-value=4.7 Score=37.59 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=17.8
Q ss_pred eeEEEEeCCCCCChhHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il 275 (697)
.=-|+|.|.+|+|||.....++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3468999999999998766654
No 492
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=59.42 E-value=7.2 Score=43.57 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005424 395 DDAEQFRIVVEALDIVHVSKEDQESVFAMLAAV 427 (697)
Q Consensus 395 dD~~~F~~l~~Al~~LGfs~ee~~~I~~iLAAI 427 (697)
-+.+++...++....+.++++-...|.++..+.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~l 241 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQL 241 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHh
Confidence 356778888888888888887777776666443
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=59.29 E-value=5.3 Score=37.10 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.1
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
++.=-|+|.|.+|+|||.....++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 344579999999999998876654
No 494
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=59.05 E-value=2.4 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=24.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il~yLa 279 (697)
+..+.+-|.|+||||||+..|.++.++.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999987664
No 495
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=58.91 E-value=5.2 Score=36.72 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=18.6
Q ss_pred CceeEEEEeCCCCCChhHHHHHHH
Q 005424 252 EVNQSIIISGESGAGKTETAKIAM 275 (697)
Q Consensus 252 ~~nQsIiiSGESGAGKTe~tK~il 275 (697)
+..=.|++.|.+|+|||.....++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 445679999999999998766553
No 496
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=58.62 E-value=6.6 Score=41.56 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=19.5
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 688999999999999999885
No 497
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=58.56 E-value=6.7 Score=41.94 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.4
Q ss_pred cCceeEEEEeCCCCCChhHHH
Q 005424 251 DEVNQSIIISGESGAGKTETA 271 (697)
Q Consensus 251 ~~~nQsIiiSGESGAGKTe~t 271 (697)
++.|-||+-.|.+|||||.++
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 678999999999999999885
No 498
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=58.46 E-value=4.7 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIAMQY 277 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~il~y 277 (697)
.+.++|+|.+|||||+..|.+.-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 688999999999999999998653
No 499
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=58.37 E-value=6.1 Score=43.99 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhcCceeEEEEeCCCCCChhHHHHHHHHHHHH
Q 005424 238 YAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (697)
Q Consensus 238 favA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~il~yLa~ 280 (697)
+.+.-++...|..-.+.|.++|.|.||+|||+.++.++...+.
T Consensus 135 l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 135 LETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp ECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 3444457777777778999999999999999999999887664
No 500
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=58.31 E-value=4.4 Score=37.54 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.4
Q ss_pred eeEEEEeCCCCCChhHHHHHH
Q 005424 254 NQSIIISGESGAGKTETAKIA 274 (697)
Q Consensus 254 nQsIiiSGESGAGKTe~tK~i 274 (697)
.=-|++.|.+|+|||...+.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346999999999999886655
Done!