Query 005426
Match_columns 697
No_of_seqs 316 out of 2680
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 23:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302 T-type voltage-gated C 100.0 2E-70 4.4E-75 587.7 37.0 533 28-652 1110-1694(1956)
2 KOG2301 Voltage-gated Ca2+ cha 100.0 5.1E-71 1.1E-75 652.5 30.4 525 25-651 824-1409(1592)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 4.4E-62 9.5E-67 576.7 33.2 557 21-653 55-672 (1592)
4 KOG2302 T-type voltage-gated C 100.0 2.1E-62 4.6E-67 526.2 19.5 606 29-657 608-1403(1956)
5 KOG3713 Voltage-gated K+ chann 100.0 4.4E-38 9.6E-43 326.6 12.7 253 25-291 168-446 (477)
6 KOG1545 Voltage-gated shaker-l 100.0 8.5E-33 1.8E-37 272.1 -0.2 248 24-281 166-452 (507)
7 KOG4390 Voltage-gated A-type K 99.9 2.8E-29 6.1E-34 249.1 -4.6 241 29-282 165-416 (632)
8 KOG3713 Voltage-gated K+ chann 99.9 1.4E-24 3E-29 226.2 17.4 248 384-656 172-444 (477)
9 PF00520 Ion_trans: Ion transp 99.9 6.1E-22 1.3E-26 194.4 12.6 182 90-271 2-200 (200)
10 PF00520 Ion_trans: Ion transp 99.9 7.1E-22 1.5E-26 193.9 12.8 198 433-638 1-200 (200)
11 PLN03223 Polycystin cation cha 99.8 2E-18 4.4E-23 196.0 24.9 191 89-282 1177-1429(1634)
12 PLN03223 Polycystin cation cha 99.8 1E-18 2.2E-23 198.5 21.6 199 431-649 1178-1429(1634)
13 KOG1545 Voltage-gated shaker-l 99.8 5.2E-20 1.1E-24 182.2 8.2 249 383-656 170-460 (507)
14 KOG4390 Voltage-gated A-type K 99.6 2.7E-17 5.9E-22 164.2 -5.3 237 384-652 165-419 (632)
15 KOG3599 Ca2+-modulated nonsele 99.5 2E-13 4.3E-18 155.9 18.2 198 432-652 469-689 (798)
16 PF08016 PKD_channel: Polycyst 99.5 2.6E-13 5.7E-18 149.1 16.8 178 93-277 219-424 (425)
17 PF08016 PKD_channel: Polycyst 99.5 4.5E-13 9.8E-18 147.2 18.2 188 432-644 214-424 (425)
18 KOG3599 Ca2+-modulated nonsele 99.5 2.3E-12 4.9E-17 147.4 19.7 187 91-284 472-688 (798)
19 KOG1419 Voltage-gated K+ chann 99.3 5.9E-13 1.3E-17 139.8 4.6 189 86-280 126-327 (654)
20 TIGR00870 trp transient-recept 99.2 4.8E-10 1E-14 132.5 19.2 220 431-654 391-627 (743)
21 KOG1419 Voltage-gated K+ chann 99.1 6.5E-10 1.4E-14 117.2 11.6 235 384-646 75-326 (654)
22 TIGR00870 trp transient-recept 99.0 5.4E-09 1.2E-13 123.6 17.9 192 92-285 396-625 (743)
23 KOG3609 Receptor-activated Ca2 98.8 1.1E-06 2.4E-11 98.4 24.4 219 432-654 387-623 (822)
24 PLN03192 Voltage-dependent pot 98.5 2.9E-06 6.2E-11 101.3 17.9 178 88-274 95-302 (823)
25 KOG3609 Receptor-activated Ca2 98.2 1.3E-05 2.9E-10 89.9 13.5 193 90-283 386-619 (822)
26 PLN03192 Voltage-dependent pot 98.2 6.4E-05 1.4E-09 89.9 19.3 222 398-644 63-305 (823)
27 KOG0510 Ankyrin repeat protein 97.7 0.00029 6.2E-09 78.8 12.6 166 111-283 588-765 (929)
28 KOG0510 Ankyrin repeat protein 97.4 0.002 4.4E-08 72.3 14.2 180 444-649 578-764 (929)
29 KOG3733 Mucolipidin and relate 97.4 0.00097 2.1E-08 69.1 9.7 132 502-653 384-518 (566)
30 KOG3614 Ca2+/Mg2+-permeable ca 97.3 0.023 5E-07 67.5 21.8 180 98-281 835-1048(1381)
31 KOG3614 Ca2+/Mg2+-permeable ca 97.3 0.011 2.5E-07 70.0 18.3 242 385-653 779-1053(1381)
32 KOG0498 K+-channel ERG and rel 97.2 0.0055 1.2E-07 70.1 14.4 178 88-279 120-347 (727)
33 PRK10537 voltage-gated potassi 97.1 0.0046 1E-07 66.8 12.7 88 147-243 106-193 (393)
34 KOG3676 Ca2+-permeable cation 97.0 0.038 8.3E-07 62.6 18.7 118 528-654 539-659 (782)
35 KOG0498 K+-channel ERG and rel 96.9 0.025 5.3E-07 64.9 16.3 236 399-647 80-352 (727)
36 KOG1420 Ca2+-activated K+ chan 96.9 0.00047 1E-08 73.7 2.2 137 88-238 165-309 (1103)
37 KOG3533 Inositol 1,4,5-trispho 96.7 0.017 3.7E-07 67.5 12.6 50 158-207 2397-2446(2706)
38 KOG3533 Inositol 1,4,5-trispho 96.7 0.13 2.8E-06 60.7 19.1 146 509-654 2399-2581(2706)
39 KOG3676 Ca2+-permeable cation 96.2 0.26 5.7E-06 56.1 17.9 99 180-282 540-654 (782)
40 KOG3733 Mucolipidin and relate 95.9 0.068 1.5E-06 55.9 10.8 116 158-280 389-512 (566)
41 PF07885 Ion_trans_2: Ion chan 95.8 0.045 9.7E-07 44.7 7.4 76 191-276 3-78 (79)
42 KOG3684 Ca2+-activated K+ chan 94.3 0.35 7.6E-06 51.6 10.6 102 170-278 242-343 (489)
43 PF13499 EF-hand_7: EF-hand do 93.2 0.091 2E-06 41.0 3.2 64 294-358 2-65 (66)
44 cd00213 S-100 S-100: S-100 dom 92.8 0.89 1.9E-05 37.8 8.9 73 290-362 6-80 (88)
45 KOG1420 Ca2+-activated K+ chan 92.0 0.093 2E-06 56.8 2.3 45 431-475 164-209 (1103)
46 KOG4404 Tandem pore domain K+ 91.0 1.7 3.6E-05 44.6 9.8 78 181-263 155-236 (350)
47 PRK10537 voltage-gated potassi 91.0 4.7 0.0001 43.7 14.2 101 498-628 108-208 (393)
48 cd05022 S-100A13 S-100A13: S-1 90.6 1.2 2.6E-05 37.2 7.2 66 292-362 8-76 (89)
49 smart00027 EH Eps15 homology d 89.9 2.5 5.4E-05 35.8 8.8 68 291-365 9-76 (96)
50 cd05026 S-100Z S-100Z: S-100Z 89.8 2.5 5.4E-05 35.6 8.7 70 293-362 11-82 (93)
51 cd05031 S-100A10_like S-100A10 88.8 2.5 5.3E-05 35.7 8.0 73 292-364 8-82 (94)
52 cd05027 S-100B S-100B: S-100B 88.7 2.3 5E-05 35.4 7.6 69 293-362 9-80 (88)
53 cd05025 S-100A1 S-100A1: S-100 87.4 4.2 9.1E-05 34.1 8.5 69 292-361 9-80 (92)
54 COG5126 FRQ1 Ca2+-binding prot 87.4 1.6 3.6E-05 40.6 6.4 64 291-359 91-154 (160)
55 KOG0501 K+-channel KCNQ [Inorg 86.2 11 0.00024 41.7 12.5 42 89-131 253-308 (971)
56 cd00052 EH Eps15 homology doma 86.1 3.8 8.1E-05 31.6 7.1 62 295-363 2-63 (67)
57 KOG0500 Cyclic nucleotide-gate 85.9 10 0.00022 41.3 12.0 110 81-205 27-149 (536)
58 KOG0044 Ca2+ sensor (EF-Hand s 85.8 1.6 3.4E-05 42.1 5.6 67 294-360 102-174 (193)
59 cd05023 S-100A11 S-100A11: S-1 85.1 6.3 0.00014 32.9 8.2 70 293-362 10-81 (89)
60 PF01007 IRK: Inward rectifier 84.7 6.6 0.00014 41.6 10.1 63 213-278 80-142 (336)
61 cd00252 SPARC_EC SPARC_EC; ext 82.2 7.3 0.00016 34.3 7.8 62 289-359 45-106 (116)
62 KOG2243 Ca2+ release channel ( 81.7 2 4.3E-05 51.1 5.0 138 505-654 4792-4934(5019)
63 KOG0501 K+-channel KCNQ [Inorg 80.9 22 0.00048 39.5 12.2 74 397-472 218-305 (971)
64 cd00051 EFh EF-hand, calcium b 79.9 6.6 0.00014 28.9 6.2 60 294-358 2-61 (63)
65 KOG0028 Ca2+-binding protein ( 79.7 11 0.00024 34.8 8.1 64 291-359 105-168 (172)
66 KOG0027 Calmodulin and related 78.3 9.2 0.0002 35.4 7.7 67 291-362 7-73 (151)
67 COG5126 FRQ1 Ca2+-binding prot 78.2 11 0.00024 35.1 7.9 66 292-363 20-85 (160)
68 KOG0500 Cyclic nucleotide-gate 77.5 89 0.0019 34.4 15.3 45 426-470 26-83 (536)
69 KOG0027 Calmodulin and related 77.2 9.1 0.0002 35.4 7.3 63 291-358 84-146 (151)
70 cd05030 calgranulins Calgranul 76.1 20 0.00043 29.7 8.3 58 305-362 23-80 (88)
71 PF14788 EF-hand_10: EF hand; 75.8 6.9 0.00015 28.7 4.6 46 312-362 5-50 (51)
72 PTZ00183 centrin; Provisional 75.4 11 0.00025 34.5 7.5 63 292-359 90-152 (158)
73 cd05024 S-100A10 S-100A10: A s 75.1 14 0.00031 30.9 7.0 54 307-361 22-76 (91)
74 KOG2243 Ca2+ release channel ( 72.8 5.6 0.00012 47.7 5.3 125 159-283 4795-4930(5019)
75 PTZ00184 calmodulin; Provision 70.4 16 0.00034 33.1 7.1 60 294-358 86-145 (149)
76 KOG0034 Ca2+/calmodulin-depend 70.4 9.5 0.0002 36.7 5.6 68 292-359 104-173 (187)
77 PTZ00184 calmodulin; Provision 68.3 25 0.00053 31.8 7.9 64 292-360 11-74 (149)
78 PTZ00183 centrin; Provisional 67.9 26 0.00057 32.1 8.2 64 292-360 17-80 (158)
79 cd05029 S-100A6 S-100A6: S-100 65.9 53 0.0012 27.2 8.6 66 294-361 12-79 (88)
80 PF00036 EF-hand_1: EF hand; 65.8 8.1 0.00018 24.7 2.8 27 294-320 2-28 (29)
81 KOG0499 Cyclic nucleotide-gate 65.3 1.5E+02 0.0032 33.6 13.7 169 88-276 264-456 (815)
82 PF00036 EF-hand_1: EF hand; 65.1 5.6 0.00012 25.4 2.0 26 335-360 2-27 (29)
83 PF13833 EF-hand_8: EF-hand do 63.9 14 0.00031 27.1 4.4 50 306-359 2-51 (54)
84 TIGR01404 FlhB_rel_III type II 63.8 50 0.0011 35.2 10.0 21 674-694 235-255 (342)
85 PRK12721 secretion system appa 59.8 63 0.0014 34.5 9.9 20 674-693 236-255 (349)
86 PRK06298 type III secretion sy 57.1 74 0.0016 34.0 9.9 20 674-693 237-256 (356)
87 PF06512 Na_trans_assoc: Sodiu 56.7 2.5 5.5E-05 42.6 -1.1 25 383-407 215-239 (239)
88 KOG0499 Cyclic nucleotide-gate 56.2 1.9E+02 0.004 32.8 12.6 45 428-472 260-318 (815)
89 PRK08156 type III secretion sy 54.1 1.4E+02 0.0031 31.9 11.4 20 674-693 231-250 (361)
90 PF13405 EF-hand_6: EF-hand do 52.2 18 0.0004 23.1 2.9 26 294-319 2-27 (31)
91 PF13202 EF-hand_5: EF hand; P 49.9 18 0.0004 22.1 2.4 23 294-316 1-23 (25)
92 PRK12309 transaldolase/EF-hand 48.7 1E+02 0.0022 33.5 9.4 53 291-361 333-385 (391)
93 KOG3827 Inward rectifier K+ ch 47.5 67 0.0015 34.1 7.4 61 212-275 107-167 (400)
94 PRK13109 flhB flagellar biosyn 47.3 1.3E+02 0.0027 32.3 9.8 20 674-693 245-264 (358)
95 KOG0036 Predicted mitochondria 46.6 82 0.0018 33.9 7.9 68 288-359 10-77 (463)
96 KOG0031 Myosin regulatory ligh 46.4 1.5E+02 0.0032 27.4 8.5 68 292-359 32-127 (171)
97 PRK05702 flhB flagellar biosyn 44.7 1.1E+02 0.0023 32.9 8.7 20 674-693 243-262 (359)
98 KOG0036 Predicted mitochondria 44.5 89 0.0019 33.6 7.8 64 290-358 80-143 (463)
99 COG1377 FlhB Flagellar biosynt 44.2 1.8E+02 0.0038 31.1 10.0 20 674-693 243-262 (363)
100 TIGR00328 flhB flagellar biosy 44.0 1.6E+02 0.0034 31.5 9.9 20 674-693 236-255 (347)
101 PF15086 UPF0542: Uncharacteri 43.3 1.7E+02 0.0036 23.3 7.7 20 233-252 6-25 (74)
102 KOG1418 Tandem pore domain K+ 42.2 50 0.0011 35.9 6.2 41 214-258 112-152 (433)
103 PRK12468 flhB flagellar biosyn 41.5 1.9E+02 0.0042 31.3 10.1 20 674-693 243-262 (386)
104 PRK12772 bifunctional flagella 40.2 1.8E+02 0.0039 33.7 10.3 24 257-280 218-241 (609)
105 PLN02964 phosphatidylserine de 39.7 95 0.0021 36.0 7.8 63 294-361 181-243 (644)
106 PRK09108 type III secretion sy 39.7 2.1E+02 0.0045 30.6 10.0 20 674-693 238-257 (353)
107 PRK12773 flhB flagellar biosyn 38.3 2.3E+02 0.005 32.4 10.2 7 113-119 68-74 (646)
108 KOG3684 Ca2+-activated K+ chan 38.1 3.7E+02 0.008 29.5 11.2 52 581-639 286-337 (489)
109 KOG0377 Protein serine/threoni 37.5 2.4E+02 0.0051 30.7 9.6 70 291-361 546-615 (631)
110 KOG0041 Predicted Ca2+-binding 36.9 1.3E+02 0.0029 28.9 7.0 60 294-358 101-160 (244)
111 PF10591 SPARC_Ca_bdg: Secrete 36.0 47 0.001 29.1 3.7 60 290-356 52-111 (113)
112 PF11241 DUF3043: Protein of u 35.2 3.9E+02 0.0084 25.3 9.7 16 383-398 60-75 (170)
113 KOG0046 Ca2+-binding actin-bun 35.2 1.2E+02 0.0026 33.7 7.2 68 290-360 17-84 (627)
114 PF10669 Phage_Gp23: Protein g 33.2 1.1E+02 0.0024 25.5 5.1 30 615-644 14-43 (121)
115 PF12763 EF-hand_4: Cytoskelet 32.5 1.7E+02 0.0036 25.2 6.5 61 291-359 9-69 (104)
116 TIGR01710 typeII_sec_gspG gene 31.5 3.7E+02 0.008 24.1 9.0 45 260-304 11-55 (134)
117 PF13608 Potyvirid-P3: Protein 30.5 4.4E+02 0.0096 29.2 11.0 67 254-321 245-317 (445)
118 KOG0031 Myosin regulatory ligh 30.2 2E+02 0.0044 26.6 6.7 62 292-358 101-162 (171)
119 KOG0377 Protein serine/threoni 30.2 3.2E+02 0.0069 29.7 9.1 77 290-366 462-580 (631)
120 PF07885 Ion_trans_2: Ion chan 28.5 3E+02 0.0065 21.8 7.6 57 580-643 22-78 (79)
121 COG5249 RER1 Golgi protein inv 27.2 80 0.0017 28.5 3.6 24 628-651 66-89 (180)
122 KOG3193 K+ channel subunit [In 25.8 20 0.00042 39.3 -0.5 50 217-278 217-266 (1087)
123 PF04791 LMBR1: LMBR1-like mem 25.5 5.4E+02 0.012 28.5 11.0 22 255-276 173-194 (471)
124 KOG1688 Golgi proteins involve 24.9 73 0.0016 29.8 3.0 18 625-643 70-87 (188)
125 KOG0028 Ca2+-binding protein ( 24.8 2.7E+02 0.0058 26.0 6.6 64 290-358 31-94 (172)
126 PF10669 Phage_Gp23: Protein g 23.9 4.4E+02 0.0094 22.1 8.3 27 251-277 17-43 (121)
127 PF01007 IRK: Inward rectifier 22.0 2.8E+02 0.0061 29.5 7.2 65 578-647 80-144 (336)
128 COG1422 Predicted membrane pro 21.1 3.5E+02 0.0077 26.2 6.9 23 615-638 42-64 (201)
129 KOG4404 Tandem pore domain K+ 20.6 5.6E+02 0.012 26.9 8.6 29 529-557 154-182 (350)
No 1
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-70 Score=587.74 Aligned_cols=533 Identities=21% Similarity=0.302 Sum_probs=436.8
Q ss_pred CcccccchhhhhcCChhhhhhhhhcccccccccCCCCCccCCC---ccccccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 005426 28 TALFRRRTDAITRGSPYQKAAALVDLKPLWCAKTGVGTYSCYD---REYYYLGQLPYLTGWESLVYEGITLVILIIHTFF 104 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~e~~~~~~F~~E~~l 104 (697)
-+++|.-|+.+..+.-|...+.++|+...... . ...+..+ .|+++ ++. -+++|+++|++|+.+
T Consensus 1110 Q~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVti--a-lerp~i~~~s~EriF------ltl-----snyIFtaIfV~Em~l 1175 (1956)
T KOG2302|consen 1110 QNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTI--A-LERPAIVEGSTERIF------LTL-----SNYIFTAIFVVEMTL 1175 (1956)
T ss_pred ccHHHHHHHHHHHHhhhhheehhhhhhhhHHH--H-hcccccccCcceEEE------EEe-----cchHHHHHHHHHHHH
Confidence 35688899999999999999988887332222 1 1222222 22222 221 259999999999999
Q ss_pred hHhhhch----hhhhhccccchhhhHHHHHHHHHHHHHhhcCC--ccCccchheeechhhhhHhhhccHHHHHHHHHHHH
Q 005426 105 PITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSP--IAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAG 178 (697)
Q Consensus 105 k~~~~g~----~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~--~~~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~ 178 (697)
|+++.|+ .+|+++.||.+|++++.++++|+++.....+. ....++++|.+|.+||+|.+++.++++.++.||.+
T Consensus 1176 KVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~s 1255 (1956)
T KOG2302|consen 1176 KVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLIS 1255 (1956)
T ss_pred HHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHh
Confidence 9999886 69999999999999999999999987643111 12357788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------------------ccccccccHHHHHHHHHHHHcCCC
Q 005426 179 MLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-------------------------QGNMVFTSFGTTLYQMFVLFTTSN 233 (697)
Q Consensus 179 s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~-------------------------~~~~~F~~~~~s~~~lf~~~t~~~ 233 (697)
|++++++++++++.++++|+++|+++|.|+- ...+||||.++|++++|++.|.+|
T Consensus 1256 SLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDg 1335 (1956)
T KOG2302|consen 1256 SLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDG 1335 (1956)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998531 124689999999999999999999
Q ss_pred ChhhhH-----------HhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005426 234 NPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLID 302 (697)
Q Consensus 234 w~dv~~-----------~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~~~~~~~~~~l~~~~~~l~ 302 (697)
|.++|+ |+..+++|..+|||+|.+|.+|+++|+|++++++||.+.++++++++.++++++.-
T Consensus 1336 Wv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrL------- 1408 (1956)
T KOG2302|consen 1336 WVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRL------- 1408 (1956)
T ss_pred hhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 999984 78899999999999999999999999999999999999988877665444332111
Q ss_pred ccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHhhhcccCCccccccCCccc
Q 005426 303 NYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIY 382 (697)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (697)
+.+.+.+ -..++.|-+.+
T Consensus 1409 ----------------rrlekkr----------------------------------------R~Aq~kpyyse------ 1426 (1956)
T KOG2302|consen 1409 ----------------RRLEKKR----------------------------------------RAAQRKPYYSE------ 1426 (1956)
T ss_pred ----------------HHHHHHH----------------------------------------HhccCCccccc------
Confidence 1110000 00001111111
Q ss_pred CcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcc
Q 005426 383 HSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDG 462 (697)
Q Consensus 383 ~~~~r~~~~~lv~~~~f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a~g~~~y~~~~ 462 (697)
-+..|+.++....+.+.+.++.+++.+|++++..|++ .++....+.+.+.++.|+.+|+.|.++|.+++|.++||++.
T Consensus 1427 yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdr 1504 (1956)
T KOG2302|consen 1427 YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDR 1504 (1956)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhh
Confidence 1467899999999999999999999999999999987 45566788999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005426 463 QNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCV 542 (697)
Q Consensus 463 wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~ 542 (697)
||.+|+.|++.|+.+..+.-+.. +.....|++++|++|++|+.|++|+++...++|.++.|+++++|.+.++.+++.++
T Consensus 1505 wnqldlaivlls~mgitleeie~-naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmll 1583 (1956)
T KOG2302|consen 1505 WNQLDLAIVLLSVMGITLEEIEI-NAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLL 1583 (1956)
T ss_pred hhhhhHHHHHHHHhcccHhheee-cccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999887754322 12344578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhhC-------Ccee
Q 005426 543 QCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-------TAWT 615 (697)
Q Consensus 543 ~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~-------~~~~ 615 (697)
+||||.+|+++||... |+.+.++.+... +..|.||+.|++|||+++|+|||+.+|.|....|. ...+
T Consensus 1584 ffiyaalgvelfg~le--c~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~s 1657 (1956)
T KOG2302|consen 1584 FFIYAALGVELFGKLE--CNEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVS 1657 (1956)
T ss_pred HHHHHHHHHHHhcccc--cCCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhcc
Confidence 9999999999999874 554444444433 46999999999999999999999999999876653 3568
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005426 616 LAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 652 (697)
Q Consensus 616 ~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~ 652 (697)
++||++|++...|+++|+++|+++....+..++.++.
T Consensus 1658 p~yfvsfvltaqfvlvnvvvavlmkhleesnkea~ed 1694 (1956)
T KOG2302|consen 1658 PLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQED 1694 (1956)
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhhhh
Confidence 9999999999999999999999998887665444433
No 2
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-71 Score=652.47 Aligned_cols=525 Identities=23% Similarity=0.382 Sum_probs=441.9
Q ss_pred CCCCcccccchhhhhcCChhhhhhhhhcccccccccCCCCCccCCCccccccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 005426 25 RGPTALFRRRTDAITRGSPYQKAAALVDLKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFF 104 (697)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~F~~E~~l 104 (697)
..+++ +|+.|..++++.||..++..+++.+..|+.+ +........ ....++. ..|++|+.+|++|+++
T Consensus 824 ~~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~--ed~~~~~~~----~~~~~L~-----y~D~~Ft~iFt~Em~l 891 (1592)
T KOG2301|consen 824 KSWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAF--EDVRGENRP----TINGILE-----YADYIFTYIFTFEMLL 891 (1592)
T ss_pred ccccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccc--cCcchhhch----hhhhHHH-----HHHHHHHHHHHHHHHH
Confidence 33455 9999999999999999999999988888866 322211111 1234443 4599999999999999
Q ss_pred hHhhhchhhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHH
Q 005426 105 PITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYL 184 (697)
Q Consensus 105 k~~~~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~ 184 (697)
|++++|...|++|.||++|+++++.++++++.... .....+.+|.+|+|||||.++.++++|.++.++..++|.++
T Consensus 892 K~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~ 967 (1592)
T KOG2301|consen 892 KWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIF 967 (1592)
T ss_pred HHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 99999998899999999999999999999987643 23467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-----------------------------------ccccccccHHHHHHHHHHHH
Q 005426 185 NVLALGLLFLLFSSWLAYVIFEDTV-----------------------------------QGNMVFTSFGTTLYQMFVLF 229 (697)
Q Consensus 185 ~v~~l~~~~~~ifai~g~~lF~~~~-----------------------------------~~~~~F~~~~~s~~~lf~~~ 229 (697)
++++++++++++||++|+++|+|+- +.+.||||+++|++++|++.
T Consensus 968 nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~nfDnv~~a~laLf~v~ 1047 (1592)
T KOG2301|consen 968 NVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFNFDNVGNAMLALFQVA 1047 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999630 23567999999999999999
Q ss_pred cCCCChhhhHH-----------hhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 230 TTSNNPDVWIP-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAF 298 (697)
Q Consensus 230 t~~~w~dv~~~-----------~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~~~~~~~~~~l~~~~ 298 (697)
|.+||+|+|+. .+..+.+.++||++|++++.|+.+|+|+|+|++||+++.+++...
T Consensus 1048 tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~------------- 1114 (1592)
T KOG2301|consen 1048 TFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGT------------- 1114 (1592)
T ss_pred hcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhh-------------
Confidence 99999999864 445667889999999999999999999999999999888775542
Q ss_pred HhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHhhhcccCCccccccC
Q 005426 299 NLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENL 378 (697)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 378 (697)
..+.++. +.....++... ++.+++.|++
T Consensus 1115 ---------~~~~eq~-~~~~~~~~l~s--------------------------------------k~~~r~ipr~---- 1142 (1592)
T KOG2301|consen 1115 ---------FMTEEQK-KRLNAAKKLGS--------------------------------------KPPQRPIPRP---- 1142 (1592)
T ss_pred ---------hhhHHHH-HHHHHHHHhcC--------------------------------------CCCCCCCCCC----
Confidence 0111110 00000100000 1111122221
Q ss_pred CcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 005426 379 PSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENY 458 (697)
Q Consensus 379 ~~~~~~~~r~~~~~lv~~~~f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a~g~~~y 458 (697)
.++.|.+++.++.++.|++.++.++++|.+.++++++ .++......+..++.+|+.+|++|+++|++|.|++.|
T Consensus 1143 ----~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~~y 1216 (1592)
T KOG2301|consen 1143 ----RNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFIVLFTIECILKVIALRFRGY 1216 (1592)
T ss_pred ----cchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 2567899999999999999999999999999999987 4555667789999999999999999999999999999
Q ss_pred hhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 005426 459 WRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGT 538 (697)
Q Consensus 459 ~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l 538 (697)
|+++||+||+++++.|+++.+++...+. +..++...++.|++|+.|++|+++..+++|.|+.|++.|+|++.+++++
T Consensus 1217 f~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lL 1293 (1592)
T KOG2301|consen 1217 FTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILL 1293 (1592)
T ss_pred ccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999988766543 2234566899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHh----------
Q 005426 539 IFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE---------- 608 (697)
Q Consensus 539 ~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~---------- 608 (697)
+++++++||++|||+||....+ ++++ +.||.|+++|++.||+++|+|||+++|++++.
T Consensus 1294 l~ll~fiYAi~Gmq~Fg~Vkl~--------~i~~----~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~ 1361 (1592)
T KOG2301|consen 1294 LFLLFFIYAIIGMQLFGYVKLG--------GIND----HNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDG 1361 (1592)
T ss_pred HHHHHHHHHHHHHHHhhheecc--------ccCC----CcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999999998765 2222 47999999999999999999999999999875
Q ss_pred ----hhC-CceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005426 609 ----LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 651 (697)
Q Consensus 609 ----~~~-~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~ 651 (697)
.|| .+++++||++|++++.++++|||||||+|||+..+++.++
T Consensus 1362 ~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1362 NNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred CcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 366 5789999999999999999999999999999999887774
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-62 Score=576.75 Aligned_cols=557 Identities=20% Similarity=0.299 Sum_probs=437.4
Q ss_pred CccCCCCCcccccchhhhhcCChhhhhhhhhcccccccccCCCCCccCCCccccccCCCCCcchhhHHHHHHHHHHHHHH
Q 005426 21 NRRRRGPTALFRRRTDAITRGSPYQKAAALVDLKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILII 100 (697)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~F~~ 100 (697)
.....++.+..|+-+..+.++|+|+..+...+++.+.+... . .+ .+.+. ..|+.++++|++
T Consensus 55 ~l~~~s~~n~~R~~~i~i~~~~~f~~~i~~ti~~ncv~~~~--~-----~~-------~~~~~-----~~e~~f~~i~~~ 115 (1592)
T KOG2301|consen 55 ALLSLSPFNPIRSSAIKILVHPWFSLFILATIIANCVVMAM--T-----PL-------NYWIL-----AAEYTFLGIFTF 115 (1592)
T ss_pred hhhhcCcccchhhheeeeeccccHHHHHHHHHHHHeeeecc--C-----CC-------Ccchh-----hcceehhhHHHH
Confidence 34467788999999999999999999999888855544433 1 01 12222 249999999999
Q ss_pred HHHHhHhhhch----hhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhccHHHHHHHHHH
Q 005426 101 HTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVL 176 (697)
Q Consensus 101 E~~lk~~~~g~----~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l 176 (697)
|.++|+++.|. ..|+||+||++|+++++..+++.++.. ..++.+|.+|++|++|++...|+++..+.++
T Consensus 116 E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~-------~~~~~lR~frvlr~lk~vs~~~~lk~~~~~i 188 (1592)
T KOG2301|consen 116 ESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHL-------YNIRALRTFRVLRALKLVSGIPGLKTRVGAL 188 (1592)
T ss_pred HHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhccc-------cchhhhccccccchhhhccCCCChHHHHHHH
Confidence 99999999987 489999999999999999988776542 2488999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------------------------------------
Q 005426 177 AGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT------------------------------------------------ 208 (697)
Q Consensus 177 ~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~------------------------------------------------ 208 (697)
.++..++..+.++.++.+.+||++|.++|.|.
T Consensus 189 i~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~C~~~~~~p 268 (1592)
T KOG2301|consen 189 IKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGNNYVCMQLGANP 268 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCCccchhhcCCCC
Confidence 99999999999999999999999999999641
Q ss_pred cccccccccHHHHHHHHHHHHcCCCChhhhHHhhh-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 209 VQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYK-ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 287 (697)
Q Consensus 209 ~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~-~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~~~~ 287 (697)
+.+.++|||++.|++++|+++|.|||+|++++... .+.|.++||+.++++|+|+++|+++||+..+|++++++..++.+
T Consensus 269 ~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~~~~~~ 348 (1592)
T KOG2301|consen 269 NGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAFEEEWQ 348 (1592)
T ss_pred CCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 12456799999999999999999999999998874 34799999999999999999999999999999999887666655
Q ss_pred HHHHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHhhhc
Q 005426 288 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 367 (697)
Q Consensus 288 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~~ 367 (697)
.++.+..++ +++..+++.+...+.......+. .++......+...+... ..++..+.+
T Consensus 349 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~-------- 406 (1592)
T KOG2301|consen 349 FKEPRFQEA----FEELLEKYEDGIFLAEADGSVES---GPKSKLFSVDSLEDVNS-------RVELLSAVS-------- 406 (1592)
T ss_pred hhchHHHHH----HHHHHHHHHHHHHHHHHhhhhcc---ccchhhhhhhhhhhhhh-------hhhhhhhhc--------
Confidence 444433222 12222222222221111111100 01100000000000000 000000000
Q ss_pred ccCCccccccC--------CcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 005426 368 KEDVPSCFENL--------PSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFG 439 (697)
Q Consensus 368 ~~~~~~~~~~~--------~~~~~~~~r~~~~~lv~~~~f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~ 439 (697)
..+++++.+. .+..+.++++.|+.++.++.+.+++.+++++|++.++.+++ .+++..+..+.+.+.+|+
T Consensus 407 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~--~~~~~~~~~l~~~~~vF~ 483 (1592)
T KOG2301|consen 407 -YKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHY--EMTKARNYLLYLGNVVFT 483 (1592)
T ss_pred -ccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEe--CCcHHHHHHHHHHHHHHH
Confidence 1222222222 22345678999999999999999999999999999999987 344555778899999999
Q ss_pred HHHHHHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005426 440 WIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYR 519 (697)
Q Consensus 440 ~iF~~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~ 519 (697)
++|+.|+.+|+++.|++.||++.||+||.++++.+++... ..++..+++||.+|++|++|+.+.++.++
T Consensus 484 ~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~-----------~~~~~g~svLr~frllRIfkl~k~wp~l~ 552 (1592)
T KOG2301|consen 484 GLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL-----------LKNVYGLSVLRSFRLLRIFKLIKSWPTLN 552 (1592)
T ss_pred HHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc-----------ccchHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999998875444332 12344588999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCH
Q 005426 520 GFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNW 599 (697)
Q Consensus 520 ~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W 599 (697)
.++..+..+..++++++++++++.++||++|||+||+....| .+. ..||++|++|++++|| .|+|+|
T Consensus 553 ~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~-----------~~~~~~fp~sfl~vFq-lt~e~W 619 (1592)
T KOG2301|consen 553 DLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI-----------HWHFTDFPHSFLSVFQ-ITCEEW 619 (1592)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC-----------ccchhhCHHHHHHHHH-HcCCch
Confidence 999999999999999999999999999999999999998764 211 1599999999999999 889999
Q ss_pred HHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005426 600 QVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 653 (697)
Q Consensus 600 ~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~ 653 (697)
+++|++++..+|..+..+||+.+++++++++||+|+|++++||.... ..+.++
T Consensus 620 ~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e-l~~~e~ 672 (1592)
T KOG2301|consen 620 TDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE-LKKPEQ 672 (1592)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh-cCChhh
Confidence 99999999999889999999999999999999999999999999876 444333
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-62 Score=526.16 Aligned_cols=606 Identities=19% Similarity=0.271 Sum_probs=442.5
Q ss_pred cccccchhhhhcCChhhhhhhhhcccccccccCCCCCccCCCccccccCCCCCcchhhHHHHHHHHHHHHHHHHHHhHhh
Q 005426 29 ALFRRRTDAITRGSPYQKAAALVDLKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITY 108 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~F~~E~~lk~~~ 108 (697)
...+.+.+.++++.+|++.+.+-|++.....+. + ....+++.. ..+ -+-+.+++.-|..|+.+|..+
T Consensus 608 r~~~~klr~ivdskyf~rgimmailvntlsmgi--e--yheqpeelt----nal-----ei~n~vftsmfalEm~lkla~ 674 (1956)
T KOG2302|consen 608 RETRAKLRGIVDSKYFNRGIMMAILVNTLSMGI--E--YHEQPEELT----NAL-----EIDNNVFTSMFALEMDLKLAA 674 (1956)
T ss_pred HHHHHHHHhhhhhhhcccchhhHHHhhhhhhcc--c--cccChHHHh----hHH-----HhhhhhhHHHHHHHHHHhhhh
Confidence 445668889999999999999998866544422 2 222333321 112 234779999999999999999
Q ss_pred hchhhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHH
Q 005426 109 EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLA 188 (697)
Q Consensus 109 ~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~ 188 (697)
+|+-+|.++|.|++|-++++++.-+++ +.....+.++|.+|.+|+++|+|..|.+|+-...+.+......-...
T Consensus 675 ~g~f~y~rnPynifdgiiv~is~wEiV------gqq~GglsvlrtFrllrvlkLvrf~palqrqlvvl~ktmdnvAtfct 748 (1956)
T KOG2302|consen 675 RGFFRYHRNPYNIFDGIIVAISHWEIV------GQQDGGLSVLRTFRLLRVLKLVRFSPALQRQLVVLMKTMDNVATFCT 748 (1956)
T ss_pred ccchhccCCCcccCCCeEEEEEeeEee------cccCCCcCCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhhhh
Confidence 999999999999999999888876653 23345788999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHhhcc----------ccccccccccHHHHHHHHHHHHcCCCChhhhHHhh-hcCcchhHHHHHHHH
Q 005426 189 LGLLFLLFSSWLAYVIFED----------TVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAY-KASRWYCLFFVLYVL 257 (697)
Q Consensus 189 l~~~~~~ifai~g~~lF~~----------~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~-~~~~~~~i~fi~~~~ 257 (697)
++.+++++||++||.+||. +.++..|||++.++..|+|++.|.++|+.+.+.-+ ..+.|+++||+..+-
T Consensus 749 llmLfififsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLyngmastSswa~lyfvAlmt 828 (1956)
T KOG2302|consen 749 LLMLFIFIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAPLYFVALMT 828 (1956)
T ss_pred HHHHHHHHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhhcCccccCCcchhHHHHhhh
Confidence 9999999999999999984 23566889999999999999999999999988766 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccccC---------------------------
Q 005426 258 IGVYFVTNLILAVVYDSFKSQLAKQVSEM---DRMRRRTLGKAFNLIDNYNVG--------------------------- 307 (697)
Q Consensus 258 i~~~~~lnl~iavi~~~f~~~~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~--------------------------- 307 (697)
.|+|++.||.+|+++++|+.......... +.+......+.|..+++..++
T Consensus 829 fGnYvlfnllvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~~t~~~H~~~r~sl~~hl~~ 908 (1956)
T KOG2302|consen 829 FGNYVLFNLLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHHHTPNGHLRSRLSLGHHLAH 908 (1956)
T ss_pred ccceeeeccchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCccccCCCCCcccccCCCCcccc
Confidence 99999999999999999985322111000 000000000001000000000
Q ss_pred --------------------------------ccCHHH-------------------H----HHHHHHhhhcC-------
Q 005426 308 --------------------------------FLNKEQ-------------------C----IKLFEELNKYR------- 325 (697)
Q Consensus 308 --------------------------------~~~~~~-------------------~----~~~~~~l~~~~------- 325 (697)
+..-++ | ...-+.+|...
T Consensus 909 ~~aasP~~~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsRrss~~qslkh~~~~ge~~S 988 (1956)
T KOG2302|consen 909 QHAASPHPGETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSRRSSWNQSLKHQDPSGEYES 988 (1956)
T ss_pred ccCCCCCCCCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhcccchhhhcccCCCcchhhh
Confidence 000000 0 00000000000
Q ss_pred -----------------------CCCCCCh------------------------H------HH-----HHHHhhhcccCC
Q 005426 326 -----------------------TLPNISR------------------------E------EF-----ELIFDELDDTHD 347 (697)
Q Consensus 326 -----------------------~~~~~~~------------------------~------~~-----~~~~~~~~~~~~ 347 (697)
+.|+... . .. +......++..+
T Consensus 989 lLsgeygq~ts~~~~~~~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~rdcngrv~s~~k~v~t~~~s~r~d 1068 (1956)
T KOG2302|consen 989 LLSGEYGQSTSQLSAPHGSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHRDCNGRVTSMSKDVFTQDISTRHD 1068 (1956)
T ss_pred hhccccccccccccCCCCCccCCCCCccccccccccccccCCCcccccccCCCccccccCCccchhhhhhhccCCCCccc
Confidence 0000000 0 00 000000000011
Q ss_pred CCCChhh-hHHHHHHHHhhhcccCCcccc------ccCCcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhccc
Q 005426 348 FKINLDE-FADLCNAIALRFQKEDVPSCF------ENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTL 420 (697)
Q Consensus 348 ~~~~~~e-f~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~lv~~~~f~~~i~~~i~ln~v~l~~~~~~ 420 (697)
+....+| -.+.|....+...+ ..|.|+ ..+.-..++++|..|++++.|+.|+.+++++|++|++++++|++.
T Consensus 1069 ~d~~~eEg~~~k~~r~r~~i~~-~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~ 1147 (1956)
T KOG2302|consen 1069 EDEGKEEGQFQKCKRVRKQITR-YKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPA 1147 (1956)
T ss_pred cccchhcchhHHHHhhhhhhcc-cCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccc
Confidence 1111111 12223333332222 222222 111112357899999999999999999999999999999999974
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhH
Q 005426 421 DIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF----ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEW 496 (697)
Q Consensus 421 ~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a~g~----~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~ 496 (697)
....+.....+..-+++|+.+|++|+.+|++|.|+ .+|+++.||.+|++++.+++++.++......+ ..-..+
T Consensus 1148 i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g---~kILgV 1224 (1956)
T KOG2302|consen 1148 IVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGG---AKILGV 1224 (1956)
T ss_pred cccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh---HHHHHH
Confidence 33332222233445699999999999999999985 69999999999999999999998887655433 234568
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-----CCccc
Q 005426 497 IRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLE-----ETDLA 571 (697)
Q Consensus 497 l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~-----~~~~~ 571 (697)
+|+||++|.+|++|.+.+.++++.++.|+..|++++.+++++++.++++|+++|+|+|+|+++.|...+. .+++.
T Consensus 1225 lrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~ 1304 (1956)
T KOG2302|consen 1225 LRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCM 1304 (1956)
T ss_pred HHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhc
Confidence 8999999999999999999999999999999999999999999999999999999999999999954332 34555
Q ss_pred ccccc----ccCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhh---------CCceeeeehhhHHHHHHHHHHHHHHHHH
Q 005426 572 DDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT---------GTAWTLAYFVSFYLITVLLLLNLVIAFV 638 (697)
Q Consensus 572 ~~~~~----~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~---------~~~~~~~yFv~~~~~~~~i~lnlfiavi 638 (697)
.+.|. .+||+|.++|+++||.+.|.|||..||||..|.. +++|..+||++|+++..++++|||++++
T Consensus 1305 aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvv 1384 (1956)
T KOG2302|consen 1305 AAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVV 1384 (1956)
T ss_pred ccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 4899999999999999999999999999977654 3789999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 005426 639 LEAFFAEMELESSEKCEEE 657 (697)
Q Consensus 639 i~~F~~~~~~~~~~~~~~~ 657 (697)
+|||-+..+.+++++....
T Consensus 1385 venfhKcrqhqe~EeArRr 1403 (1956)
T KOG2302|consen 1385 VENFHKCRQHQEAEEARRR 1403 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998887777665433
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-38 Score=326.58 Aligned_cols=253 Identities=16% Similarity=0.144 Sum_probs=211.9
Q ss_pred CCCCcccccchhhhhcCChhhhhhhhhcc---------cccccccCCCCCccCCCcccc----------ccCCCCCcchh
Q 005426 25 RGPTALFRRRTDAITRGSPYQKAAALVDL---------KPLWCAKTGVGTYSCYDREYY----------YLGQLPYLTGW 85 (697)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~ 85 (697)
.++.+++|+|+|+++|+|+++.+++++.+ +..+|+++ .|....+.... .....|.+
T Consensus 168 ~~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T--~pe~q~~~~~~~~~~~~~~~~~~~~~p~l--- 242 (477)
T KOG3713|consen 168 GGRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGT--LPEFQVPDKQGEGLLVNVEKIESEPHPIL--- 242 (477)
T ss_pred CCChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcC--CHhhhchhhccccccccccccCCCCCCch---
Confidence 56667799999999999999999998877 77889987 55554443332 22344555
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhchh-hhhhccccchhhhHHHHHHHHHHHHHhhc------CCccCccchheeechhh
Q 005426 86 ESLVYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIR 158 (697)
Q Consensus 86 ~~~~~e~~~~~~F~~E~~lk~~~~g~~-~y~~~~~n~~D~~~v~~~~i~~~~~~~~~------~~~~~~~~~lr~~R~lR 158 (697)
..+|.+|++||++|+++|++..+.| +|+|++.|++|+++++++|+++.+..... ...+..++++|++|++|
T Consensus 243 --~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~R 320 (477)
T KOG3713|consen 243 --TYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILR 320 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHH
Confidence 5679999999999999999999986 89999999999999999999998875431 22235688999999999
Q ss_pred hhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhhh
Q 005426 159 VVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVW 238 (697)
Q Consensus 159 ~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~ 238 (697)
++||.||+.|||.+..|+++|.++++.+++++.+.+.+|| ++.+|.++.++.++|.|||.++||..++|||+||||+
T Consensus 321 I~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFS--tlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm- 397 (477)
T KOG3713|consen 321 IFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFS--TLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDM- 397 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCCCCCCccccchhheeeEEEeeecccCc-
Confidence 9999999999999999999999999999999999999999 7777888888888899999999999999999999998
Q ss_pred HHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 239 IPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRR 291 (697)
Q Consensus 239 ~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~~~~~~~~ 291 (697)
+|....++..+.-.+ +++.++++|||++|++||.+.+.+++++++.+++
T Consensus 398 ~P~T~~Gklvas~ci----l~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~ 446 (477)
T KOG3713|consen 398 VPVTVLGKLVASLCI----LCGVLVLALPITIIVNNFSMYYSELKAREKAPKR 446 (477)
T ss_pred cccccchHHHHHHHH----HHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhh
Confidence 777766666554433 3444489999999999999999888777655444
No 6
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.5e-33 Score=272.08 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=199.9
Q ss_pred CCCCCcccccchhhhhcCChhhhhhhhhcc---------cccccccCCCCCccCCCcccc------------ccCCCCCc
Q 005426 24 RRGPTALFRRRTDAITRGSPYQKAAALVDL---------KPLWCAKTGVGTYSCYDREYY------------YLGQLPYL 82 (697)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l 82 (697)
..-|++.++|.+|-++|-|-++..+..+.+ +..+|+++ .|....+.+-. .....+-+
T Consensus 166 ~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClET--lPefrderd~~~~~~~~~~~~~~n~~~~~~~ 243 (507)
T KOG1545|consen 166 RPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLET--LPEFRDERDLTGHFPAGTGGGVMNPTSGPEL 243 (507)
T ss_pred ccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHh--CchhhhhccccccccccCCCcccCCCCCccc
Confidence 455778999999999999999887766555 77889987 56554442110 00001110
Q ss_pred -------chhhHHHHHHHHHHHHHHHHHHhHhhhchh-hhhhccccchhhhHHHHHHHHHHHHHhhcCCcc---------
Q 005426 83 -------TGWESLVYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA--------- 145 (697)
Q Consensus 83 -------~~~~~~~~e~~~~~~F~~E~~lk~~~~g~~-~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~--------- 145 (697)
-+.-.+++|..|++||++|+++|.++++.| .||||.+|++|+++++++++++.........++
T Consensus 244 ~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSl 323 (507)
T KOG1545|consen 244 LDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSL 323 (507)
T ss_pred ccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhH
Confidence 111137899999999999999999999997 799999999999999999999988766432221
Q ss_pred CccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHH
Q 005426 146 FNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQM 225 (697)
Q Consensus 146 ~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~l 225 (697)
..++++|+.|++|++||.||+++|+.+.+|++.|+++++.+++++++.+++|| ...+|++.+++..+|.|||.||||+
T Consensus 324 AILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs--SavYFAEade~~S~F~SIPdaFWwa 401 (507)
T KOG1545|consen 324 AILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS--SAVYFAEADEPESHFSSIPDAFWWA 401 (507)
T ss_pred HHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ceeeeeecCCCccCCCcCcccceEE
Confidence 12668888999999999999999999999999999999999999999999999 7888999889999999999999999
Q ss_pred HHHHcCCCChhhhHHhhhcCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 226 FVLFTTSNNPDVWIPAYKASRWYC-LFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 281 (697)
Q Consensus 226 f~~~t~~~w~dv~~~~~~~~~~~~-i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~ 281 (697)
.++|||+||+|+ .|...+++... ++-| .+.+.++|++.||++||...+.+
T Consensus 402 vVTMTTVGYGDm-~P~TvgGKIVGslCAi-----aGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 402 VVTMTTVGYGDM-VPVTVGGKIVGSLCAI-----AGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred EEEEEeeccccc-eecccCceehhhHHhh-----hhheEecccccEEEecccceeec
Confidence 999999999997 77777776654 4333 34447999999999999876654
No 7
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.8e-29 Score=249.12 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=193.8
Q ss_pred cccccchhhhhcCChhhhhhhhhcc-------cccccccCCCCCccCCCccc---cccCCCCCcchhhHHHHHHHHHHHH
Q 005426 29 ALFRRRTDAITRGSPYQKAAALVDL-------KPLWCAKTGVGTYSCYDREY---YYLGQLPYLTGWESLVYEGITLVIL 98 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~e~~~~~~F 98 (697)
-.+|+++|+.+|+|+.+.++.++.. ++++|..- ++-||+.... ....+-.|-.. .+++|..|+++|
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvV--ETiPCg~~~~~~~e~pCGEry~~a--FFclDTACVmIF 240 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVV--ETIPCGGSPGRSKELPCGERYPVA--FFCLDTACVMIF 240 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhcee--eecccCCCCCCceeccccccccee--eEEecceeEEEe
Confidence 5789999999999999998887765 45555533 6666664332 12222233322 267899999999
Q ss_pred HHHHHHhHhhhchh-hhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhccHHHHHHHHHHH
Q 005426 99 IIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLA 177 (697)
Q Consensus 99 ~~E~~lk~~~~g~~-~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~ 177 (697)
+.|+++|+++.+.+ +|.|+.+.++|+++++++++.+++.... ...+.+-.+|++|++|++|..||+.|||.+..+|+
T Consensus 241 T~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T KOG4390|consen 241 TGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T ss_pred eHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeecccccccchhhhhHH
Confidence 99999999998886 8999999999999999999988875421 22235668999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHH
Q 005426 178 GMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVL 257 (697)
Q Consensus 178 ~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~ 257 (697)
.+..+++.+++-+.+.+++|| .+.+++++....++|+|||.|||...++|||-||+|+......++....++-
T Consensus 319 SCASELGFLlFSLtMAIIIFA--TvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCS----- 391 (632)
T KOG4390|consen 319 SCASELGFLLFSLTMAIIIFA--TVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICS----- 391 (632)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhc-----
Confidence 999999999999999999999 7777888777789999999999999999999999998555555554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 258 IGVYFVTNLILAVVYDSFKSQLAKQ 282 (697)
Q Consensus 258 i~~~~~lnl~iavi~~~f~~~~~~~ 282 (697)
+.+.+++.|++.||++||++.+.+.
T Consensus 392 LSGVLVIALPVPvIVSNFSRIYHQN 416 (632)
T KOG4390|consen 392 LSGVLVIALPVPVIVSNFSRIYHQN 416 (632)
T ss_pred ccceEEEeccccEEEechhHHHhhh
Confidence 4444578999999999999876543
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=226.23 Aligned_cols=248 Identities=17% Similarity=0.228 Sum_probs=199.3
Q ss_pred cHHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccch----------------hHHHHHHHHHHHHH
Q 005426 384 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESS----------------LQSVWQEVEFVFGW 440 (697)
Q Consensus 384 ~~~r~~~~~lv~~~~-------f~~~i~~~i~ln~v~l~~~~~~~~~~~~----------------~~~~l~~ie~~f~~ 440 (697)
.++|+++|.+++.|+ |..+..++++++++.+|+.|.++.+... .++.+.++|++|++
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 457999999999875 7888889999999999999876544322 23468999999999
Q ss_pred HHHHHHHHHHH-hhcchhhhhccccchhHHHHHHHHHHhhHhccCCCCcc-ccchhhHHHHHHHHHHHHHHHHHHHHHhH
Q 005426 441 IYVLEMALKIY-SYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT-FLSNGEWIRYLLLARMLRLIRLLMHVQQY 518 (697)
Q Consensus 441 iF~~E~ilki~-a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~-~~~~~~~l~~lr~lR~lR~lrl~~~~~~l 518 (697)
+|++|+++|+. +....+|++++.|++|++.++.-++...+......+.. .-..+.++|++|++|++|++||.||+.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999 45567999999999999999998888877655432222 22334689999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcC
Q 005426 519 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 598 (697)
Q Consensus 519 ~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~ 598 (697)
|.+..|+.+|.+.+.-++ +|-++|+.+|+...|+.+...++ .+|.|+|.|+|+....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLl--------lfL~~GI~iFStlvY~~Ek~~~~----------~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLL--------LFLAVGIVIFSTLVYFAEKDEPD----------TKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcCCC----------CCCccccchhheeeEEEeeec
Confidence 999999999999974433 44456777777776664433222 479999999999888888777
Q ss_pred HHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005426 599 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE 656 (697)
Q Consensus 599 W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~~~~ 656 (697)
++|+ .+.++.+-...+-.++++++++.|+|.+|++||++.|.+.++.+...
T Consensus 394 YGDm-------~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 394 YGDM-------VPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred ccCc-------cccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 6654 45577788888899999999999999999999999999888776543
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=6.1e-22 Score=194.38 Aligned_cols=182 Identities=21% Similarity=0.338 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhch--hhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhccH
Q 005426 90 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 167 (697)
Q Consensus 90 ~e~~~~~~F~~E~~lk~~~~g~--~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~~ 167 (697)
+|.+|.++|++|+++|+++.|. ++|++++||++|+++++++.++.+.............+..|++|.+|++|+.+..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 6999999999999999999998 79999999999999999987766654321000012467889999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------ccccccccHHHHHHHHHHHHcCCC
Q 005426 168 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------QGNMVFTSFGTTLYQMFVLFTTSN 233 (697)
Q Consensus 168 ~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~--------------~~~~~F~~~~~s~~~lf~~~t~~~ 233 (697)
.++....++.++.+.+..++++++++++.||++|+.+|++.. .+..+|++++.|++++++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999753 234679999999999999999999
Q ss_pred ChhhhHHhh-hcCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 005426 234 NPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVV 271 (697)
Q Consensus 234 w~dv~~~~~-~~~~~~~i~fi~~~~i~~~~~lnl~iavi 271 (697)
|+|++++.+ ..+....+|+++++++++++++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999987765 55666788899999999999999999986
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=7.1e-22 Score=193.90 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--hhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHH
Q 005426 433 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 510 (697)
Q Consensus 433 ~ie~~f~~iF~~E~ilki~a~g~--~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lr 510 (697)
++|.++..+|++|.++|+.+.|+ ++|++++||++|+++++...+........... ....++.++++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 47899999999999999999998 89999999999999888765544433221110 012468899999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHH
Q 005426 511 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 590 (697)
Q Consensus 511 l~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tl 590 (697)
+++..+.++.+..++.++.+.+..++++++++++.||++|+++|++....+++... +...+..+..+|++++.|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTW--DSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------S--S----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheeccccccccccccc--cccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999876543211 1111222357999999999999
Q ss_pred HHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHH
Q 005426 591 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 638 (697)
Q Consensus 591 f~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavi 638 (697)
++++|++||++++++.+ ..++.++.+|+++++++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998866 444578899999999999999999999986
No 11
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.81 E-value=2e-18 Score=196.05 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=147.1
Q ss_pred HHHHHHHHH---HHHHHHHhHhhhc-----hhhhhhccccchhhhHHHHHHHHHHHHHhh-------------------c
Q 005426 89 VYEGITLVI---LIIHTFFPITYEG-----SPIFWKSTYTRLKVLCLLILVADFLVYGLY-------------------L 141 (697)
Q Consensus 89 ~~e~~~~~~---F~~E~~lk~~~~g-----~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~-------------------~ 141 (697)
++|.+++++ ++++-+.++.-.+ .++||+++|||+|++++++++..+++.... .
T Consensus 1177 acEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~l 1256 (1634)
T PLN03223 1177 AMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNL 1256 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhh
Confidence 456655444 4555555555433 368999999999999999998887763210 0
Q ss_pred C----------Ccc-----Cc-----------------cchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHH
Q 005426 142 S----------PIA-----FN-----------------FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLAL 189 (697)
Q Consensus 142 ~----------~~~-----~~-----------------~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l 189 (697)
. ++. .. ..++-+++++|++|+++.+|.++.+..+|.+++++++..+++
T Consensus 1257 s~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~II 1336 (1634)
T PLN03223 1257 SASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVI 1336 (1634)
T ss_pred hhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 00 011235778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCCh--hhhHHh-hhcCcchhHHHHHHHHHHHHHHHHH
Q 005426 190 GLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNP--DVWIPA-YKASRWYCLFFVLYVLIGVYFVTNL 266 (697)
Q Consensus 190 ~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~--dv~~~~-~~~~~~~~i~fi~~~~i~~~~~lnl 266 (697)
++++++.||++|+.+||... ..|+|++.|+.|+|.+++++.+. +.+.+. .....++++||++|++++.|+++||
T Consensus 1337 F~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNM 1413 (1634)
T PLN03223 1337 FGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNF 1413 (1634)
T ss_pred HHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 58999999999999999975431 112222 2345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005426 267 ILAVVYDSFKSQLAKQ 282 (697)
Q Consensus 267 ~iavi~~~f~~~~~~~ 282 (697)
|+|||.++|++.+++.
T Consensus 1414 FIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1414 LLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999886653
No 12
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.81 E-value=1e-18 Score=198.46 Aligned_cols=199 Identities=19% Similarity=0.219 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----chhhhhccccchhHHHHHHHHHHhhHhccC---------------------
Q 005426 431 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 484 (697)
Q Consensus 431 l~~ie~~f~~iF~~E~ilki~a~g-----~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~--------------------- 484 (697)
++++-.+|.++|+.+.+.++...+ +.+||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 345555667777888888887543 469999999999999988877665442100
Q ss_pred ----------CCCc----cccch-------h----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 005426 485 ----------PNGQ----TFLSN-------G----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 539 (697)
Q Consensus 485 ----------~~~~----~~~~~-------~----~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~ 539 (697)
+... ..+.+ . .+..++-+++++|++|+++.+++++.+..++..++|.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 0 022345668889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHhh--hCCceeee
Q 005426 540 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL--TGTAWTLA 617 (697)
Q Consensus 540 ~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~--~~~~~~~~ 617 (697)
+++++.||.+|..+||... .+|.|+..|+.|||++++|+.+ ..+.+.... ....++++
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhhcccchHHHH
Confidence 9999999999999999863 3899999999999999998644 333333222 23467999
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005426 618 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 649 (697)
Q Consensus 618 yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~ 649 (697)
||++|+++..++++|||+|||.+.|.+..+..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999886553
No 13
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=5.2e-20 Score=182.19 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=191.1
Q ss_pred CcHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc------------------------------
Q 005426 383 HSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES------------------------------ 425 (697)
Q Consensus 383 ~~~~r~~~~~lv~~~-------~f~~~i~~~i~ln~v~l~~~~~~~~~~~------------------------------ 425 (697)
.+.+++.+|-+.+-| ....+..++|+++++..|+||.+...+.
T Consensus 170 ~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 249 (507)
T KOG1545|consen 170 RNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDT 249 (507)
T ss_pred cchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccccc
Confidence 577889999998754 3556778889999999999986432111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhhhccccchhHHHHHHHHHHhhHhccCCCCc----cccchhhHHHHH
Q 005426 426 SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQ----TFLSNGEWIRYL 500 (697)
Q Consensus 426 ~~~~~l~~ie~~f~~iF~~E~ilki~a~g~-~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~----~~~~~~~~l~~l 500 (697)
.....+-++|..|.++|++|.++|.++..- ..|++|..|++|++.++..++.+........+. .......++|++
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRVi 329 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVI 329 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHH
Confidence 011236789999999999999999998754 468999999999999988887766554432211 111234589999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCc
Q 005426 501 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 580 (697)
Q Consensus 501 r~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF 580 (697)
|+.|++|++|+.||.++++.+.+|+..|++.+.-+ ..|-.+|+-||+...|..+.+.++ .+|
T Consensus 330 RLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL--------IFFlfIgviLFsSavYFAEade~~----------S~F 391 (507)
T KOG1545|consen 330 RLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL--------IFFLFIGVILFSSAVYFAEADEPE----------SHF 391 (507)
T ss_pred HHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhceeeeeecCCCc----------cCC
Confidence 99999999999999999999999999999986322 233447999999998876543332 599
Q ss_pred CChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005426 581 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEE 656 (697)
Q Consensus 581 ~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~~~~ 656 (697)
.+++.|+|+....+|+-|++|+ ++.+.+.-...+.+.+.+.+.+.|++.+|+.||+..|.++.+.+++.
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm-------~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee~~ 460 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDM-------VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQA 460 (507)
T ss_pred CcCcccceEEEEEEEeeccccc-------eecccCceehhhHHhhhhheEecccccEEEecccceeeccccchhhh
Confidence 9999999998888888877655 33344566677888889999999999999999999888776655443
No 14
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.7e-17 Score=164.23 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=179.8
Q ss_pred cHHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccch----------hHHHHHHHHHHHHHHHHHHH
Q 005426 384 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESS----------LQSVWQEVEFVFGWIYVLEM 446 (697)
Q Consensus 384 ~~~r~~~~~lv~~~~-------f~~~i~~~i~ln~v~l~~~~~~~~~~~~----------~~~~l~~ie~~f~~iF~~E~ 446 (697)
..+|++.|+-.++|. |.++.-+.|.++++.-.+|+.+-...+. +...+-.+|..|+.+|+.|+
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 357899999999874 7888888899999888888754322111 12345567899999999999
Q ss_pred HHHHHhh-cchhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005426 447 ALKIYSY-GFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 525 (697)
Q Consensus 447 ilki~a~-g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl 525 (697)
++|+++. ...+|.++.+.++|.+.++..++++++.-....+.. .-.||++|++|++|..|+.+++|.+..|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGa-------FVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGA-------FVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccce-------eEEEEeeeeeeeeeecccccccchhhhhH
Confidence 9999954 445889999999999999888888766433222111 22478999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHH
Q 005426 526 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 605 (697)
Q Consensus 526 ~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~ 605 (697)
..+...+.-+++-+.+.+.|||.+...-=+|. + ..+|.+++.|+|-....+|.-|++|+.
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~--------~----------at~FTsIPaaFWYTIVTmTTLGYGDMV-- 377 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGS--------S----------ATKFTSIPAAFWYTIVTMTTLGYGDMV-- 377 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc--------c----------ccccccCcHhHhhheeeeeeccccccc--
Confidence 99999887766666666677776532211111 1 259999999999777777777766554
Q ss_pred HHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005426 606 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 652 (697)
Q Consensus 606 ~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~ 652 (697)
.++.++-.|.+.+-+++.+++.|++.+|+.||+..|.++...
T Consensus 378 -----p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRA 419 (632)
T KOG4390|consen 378 -----PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419 (632)
T ss_pred -----hHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhh
Confidence 446667778888888999999999999999999998876543
No 15
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=2e-13 Score=155.92 Aligned_cols=198 Identities=17% Similarity=0.305 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHhccC-------------CCCccccch-----
Q 005426 432 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSN----- 493 (697)
Q Consensus 432 ~~ie~~f~~iF~~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~-------------~~~~~~~~~----- 493 (697)
..+-+++.+.|+++.+.+|.-++.++|++++||++|+.++.++++..++.... .+...+.+-
T Consensus 469 ~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~ 548 (798)
T KOG3599|consen 469 EVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQ 548 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 45566778889999999999888789999999999999999888765553221 111111110
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC
Q 005426 494 -----GEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEET 568 (697)
Q Consensus 494 -----~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~ 568 (697)
....-++-++-.+|++|+++.++.++.+..|+.+++++++.+.+.++++++.||.+|..+||...
T Consensus 549 ~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---------- 618 (798)
T KOG3599|consen 549 WNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----------
Confidence 01233456677889999999999999999999999999999999999999999999999999875
Q ss_pred ccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005426 569 DLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 648 (697)
Q Consensus 569 ~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~ 648 (697)
.||.|+.+|+.|++..+-|+ +-.......+...+.+||.++++++.++++|||+|+|.+.|.+.+..
T Consensus 619 ---------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~ 685 (798)
T KOG3599|consen 619 ---------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKAD 685 (798)
T ss_pred ---------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 48999999999999998872 21122233444668999999999999999999999999999998777
Q ss_pred hhhh
Q 005426 649 ESSE 652 (697)
Q Consensus 649 ~~~~ 652 (697)
.+++
T Consensus 686 ~~~~ 689 (798)
T KOG3599|consen 686 LAKE 689 (798)
T ss_pred Hhhc
Confidence 6663
No 16
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.51 E-value=2.6e-13 Score=149.07 Aligned_cols=178 Identities=20% Similarity=0.345 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhHhhhchhhhhhccccchhhhHHHHHHHHHHHHHhhc------------CCcc-Cc------------
Q 005426 93 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------------SPIA-FN------------ 147 (697)
Q Consensus 93 ~~~~~F~~E~~lk~~~~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~------------~~~~-~~------------ 147 (697)
+++++|+..-+.|+...| ++|++++||++|++++++++..+++..... ++.. ..
T Consensus 219 ~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~ 297 (425)
T PF08016_consen 219 LFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYR 297 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHH
Confidence 445556666777777777 789999999999999999887666543110 0000 00
Q ss_pred --cchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHH
Q 005426 148 --FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQM 225 (697)
Q Consensus 148 --~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~l 225 (697)
...+-++-.+|.+|+++.+|.++.+.+++.++.+++...+++++++++.||.+|+.+||+.. .+|.|++.|+.++
T Consensus 298 ~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~---~~f~s~~~s~~tl 374 (425)
T PF08016_consen 298 YLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS---EDFSSFSSSLVTL 374 (425)
T ss_pred HHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccCCHHHHHHHH
Confidence 11122355678899999999999999999999999999999999999999999999999743 5799999999999
Q ss_pred HHHHcCCCChhhhHHhh-hcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 226 FVLFTTSNNPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 277 (697)
Q Consensus 226 f~~~t~~~w~dv~~~~~-~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~ 277 (697)
+.++.++. |. .... .....+.+|+++|+++..++++|+++|++.++|++
T Consensus 375 ~~~l~g~~--~~-~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 375 FRMLLGDF--DY-DELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHhcCCC--ch-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99887532 22 1222 34456689999999999999999999999999975
No 17
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.50 E-value=4.5e-13 Score=147.24 Aligned_cols=188 Identities=19% Similarity=0.345 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHhccC------------CCCccccch------
Q 005426 432 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSN------ 493 (697)
Q Consensus 432 ~~ie~~f~~iF~~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~------------~~~~~~~~~------ 493 (697)
+.+-.++.++|+...+.|+...| ++|+++.||.+|++++++++...++.... .....+.+-
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 34455677788899999999889 69999999999999988777654432110 111111110
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCc
Q 005426 494 ----GEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 569 (697)
Q Consensus 494 ----~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~ 569 (697)
.....++-++-.+|++|+++..+.+..+..++.++.+.++.++++++++++.||..|..+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 01233455567789999999999999999999999999999999999999999999999999763
Q ss_pred cccccccccCcCChhhhHHHHHHHhhhc-CHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 570 LADDDYLLFNFNDYPNGMVTLFNLLVMG-NWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 644 (697)
Q Consensus 570 ~~~~~~~~~nF~~~~~s~~tlf~i~t~~-~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~ 644 (697)
.+|+|+..|+.++++++.++ ++.++ ...+...+++||++|+++..++++|+++|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~-----~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDEL-----YQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999999886 22222 2334467899999999999999999999999999975
No 18
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.46 E-value=2.3e-12 Score=147.35 Aligned_cols=187 Identities=14% Similarity=0.194 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhHhhhchhhhhhccccchhhhHHHHHHHHHHHHHhhcC-------------Ccc-Cc---------
Q 005426 91 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-------------PIA-FN--------- 147 (697)
Q Consensus 91 e~~~~~~F~~E~~lk~~~~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~-------------~~~-~~--------- 147 (697)
=+++..+|+++-..++.-.+.++|++++||++|++++.++++.+++.....+ +.. ..
T Consensus 472 f~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~ 551 (798)
T KOG3599|consen 472 FLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNI 551 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHH
Confidence 3445556777777887766777899999999999999999988777543210 000 00
Q ss_pred -cc----hheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHH
Q 005426 148 -FL----PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTL 222 (697)
Q Consensus 148 -~~----~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~ 222 (697)
.+ .+-++-.+|.+|+++.++.++.+.+||.++.++++.+++.++++++.||.+|+.+||... .+|.|+.+|+
T Consensus 552 ~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---~~f~~f~~s~ 628 (798)
T KOG3599|consen 552 AARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---SDFRTFVASI 628 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CChHHHHHHH
Confidence 00 122355678899999999999999999999999999999999999999999999999854 5799999999
Q ss_pred HHHHHHHcCCCChhhhHHh-hhcC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 223 YQMFVLFTTSNNPDVWIPA-YKAS-RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 284 (697)
Q Consensus 223 ~~lf~~~t~~~w~dv~~~~-~~~~-~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~ 284 (697)
.|++-.+-+ |.-+.. ...+ ....+||.++++++.++++|||+|+|.+.|.+.++...+
T Consensus 629 ~t~~~~~~G----~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 629 VTLLRYILG----DFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHHHHhc----cCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 999998875 442222 3344 456789999999999999999999999999987766544
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.9e-13 Score=139.75 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhc----------hhhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeec
Q 005426 86 ESLVYEGITLVILIIHTFFPITYEG----------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAP 155 (697)
Q Consensus 86 ~~~~~e~~~~~~F~~E~~lk~~~~g----------~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R 155 (697)
..+++|.+.+++|.+|+++|+++.| .-+|.++|..++|+++++.+++-++.........+..++.+|++.
T Consensus 126 ~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQ 205 (654)
T KOG1419|consen 126 ILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQ 205 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHH
Confidence 3478999999999999999999753 236889999999999888875533322110011122355566666
Q ss_pred hhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--ccccccccccHHHHHHHHHHHHcCC
Q 005426 156 YIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE-D--TVQGNMVFTSFGTTLYQMFVLFTTS 232 (697)
Q Consensus 156 ~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~-~--~~~~~~~F~~~~~s~~~lf~~~t~~ 232 (697)
+||.+|+=|.-..-+.+...+..--.++.-..-+- ++.++||..-+++=. + ..+.+..|+++..|+||-.+++||.
T Consensus 206 ILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIG-FL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTI 284 (654)
T KOG1419|consen 206 ILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIG-FLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTI 284 (654)
T ss_pred HHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEee
Confidence 66666665554444555555554455554433333 333444422332222 1 1234567999999999999999999
Q ss_pred CChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 233 NNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 280 (697)
Q Consensus 233 ~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~ 280 (697)
||+|..+....+...++ +|-.+.+ -+..|+.|++-+.|.--.+
T Consensus 285 GYGDk~P~TWlGr~laa-~fsligi----SFFALPAGILGSGfALKVQ 327 (654)
T KOG1419|consen 285 GYGDKTPQTWLGRLLAA-CFSLIGI----SFFALPAGILGSGFALKVQ 327 (654)
T ss_pred ccCCcCcccchhHHHHH-HHHHHHH----HHHhcccccccchhhhhhH
Confidence 99999444444444444 3332222 2678999999999974333
No 20
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.19 E-value=4.8e-10 Score=132.47 Aligned_cols=220 Identities=12% Similarity=0.023 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHh---cc--CC------CCcccc----chhh
Q 005426 431 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETIT---LA--SP------NGQTFL----SNGE 495 (697)
Q Consensus 431 l~~ie~~f~~iF~~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~---~~--~~------~~~~~~----~~~~ 495 (697)
.+.+...+...+..+....++..|...|+++.||.+|++.....+...+.. .. .. ...... ....
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 344445556667788888888888889999999999995543322221111 00 00 000000 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-CCCccccc
Q 005426 496 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKL-EETDLADD 573 (697)
Q Consensus 496 ~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~-~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~-~~~~~~~~ 573 (697)
.+-+..++..+|++.+++.++.+.-+..++.+.+. .++.++++++++++-||+...++|+.......... +.+. ...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 549 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSC 549 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccc
Confidence 34455667777777777777777778889999998 99999999999999999999999976432110000 0000 001
Q ss_pred cccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005426 574 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 653 (697)
Q Consensus 574 ~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~ 653 (697)
......|+++..++.++|..+-|++-. . +........++.++|++|.++.+++++||+||++-+.|++..+..+.+.
T Consensus 550 ~~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~w 626 (743)
T TIGR00870 550 EKQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEW 626 (743)
T ss_pred ccccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 112368999999999999888776322 1 1111112367899999999999999999999999999999877765554
Q ss_pred h
Q 005426 654 C 654 (697)
Q Consensus 654 ~ 654 (697)
.
T Consensus 627 k 627 (743)
T TIGR00870 627 K 627 (743)
T ss_pred H
Confidence 4
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.5e-10 Score=117.21 Aligned_cols=235 Identities=15% Similarity=0.247 Sum_probs=159.7
Q ss_pred cHHHHHHHhccccch------HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 005426 384 SPFSEKLKAFIRSTK------FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF-- 455 (697)
Q Consensus 384 ~~~r~~~~~lv~~~~------f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a~g~-- 455 (697)
++.+.++|++.+.|. |..+++++++.+.++-++.+..+ ........+.++|++.+++|.+|+++|+++.|.
T Consensus 75 Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e-~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~ 153 (654)
T KOG1419|consen 75 RRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEE-YEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCC 153 (654)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456788999998873 55566666666666666555422 122345678899999999999999999998753
Q ss_pred --------hhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005426 456 --------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLT 527 (697)
Q Consensus 456 --------~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~ 527 (697)
-+|.+.+..++|++++++++..+.+ .+.+..+ ....+|-+|.+.++|++|+=|.-...+.|...+..
T Consensus 154 rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~a 228 (654)
T KOG1419|consen 154 RYRGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYA 228 (654)
T ss_pred ccccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCcccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhh
Confidence 3677889999999988877543322 2233222 23457888888888888888877777777777766
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHH-HHHHhhhcCHHHHHHHH
Q 005426 528 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVT-LFNLLVMGNWQVWMQSY 606 (697)
Q Consensus 528 s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~t-lf~i~t~~~W~~im~~~ 606 (697)
--..++....+-|+. .||+..-+++=.-... +.+- ...|.++..|+|+ +..++|.. |
T Consensus 229 H~~ELiTt~YIGFL~-LIfsSflVYLaEKd~~-------~e~~------n~~F~TyADALWWG~ITltTIG--------Y 286 (654)
T KOG1419|consen 229 HSKELITTWYIGFLV-LIFSSFLVYLAEKDAQ-------GEGT------NDEFPTYADALWWGVITLTTIG--------Y 286 (654)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHhhcccc-------cccc------cccchhHHHHHHhhheeEEeec--------c
Confidence 666665555444333 3455444443322211 1111 2489999999976 55555554 6
Q ss_pred HhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 607 KELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 646 (697)
Q Consensus 607 ~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~ 646 (697)
.|.++.+|-.-+..++.-+.++-+..++.|++-..|.-.-
T Consensus 287 GDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV 326 (654)
T KOG1419|consen 287 GDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV 326 (654)
T ss_pred CCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 6777778877777777777788888999999999998543
No 22
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.03 E-value=5.4e-09 Score=123.56 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHhHhhhchhhhhhccccchhhhHHHHHHHHHHHHHhhc---C--------------Cc---cCccchh
Q 005426 92 GITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---S--------------PI---AFNFLPL 151 (697)
Q Consensus 92 ~~~~~~F~~E~~lk~~~~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~---~--------------~~---~~~~~~l 151 (697)
.+.+..+.++-...++..|...|+++.||++|++.+..++..++...... . +. ...+...
T Consensus 396 ~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ 475 (743)
T TIGR00870 396 VTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFA 475 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Confidence 34444566666666677777889999999999976666555443322100 0 00 0011223
Q ss_pred eeechhhhhHhhhccHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhccccc----------------cccc
Q 005426 152 RIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTVQ----------------GNMV 214 (697)
Q Consensus 152 r~~R~lR~lrl~~~~~~lr~l~~~l~~s~~-~l~~v~~l~~~~~~ifai~g~~lF~~~~~----------------~~~~ 214 (697)
-++..+|++.+.+.++.+--+..++.+.+. .+...+++++++++-||+...++|+...+ ....
T Consensus 476 ~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (743)
T TIGR00870 476 LVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNA 555 (743)
T ss_pred HHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccc
Confidence 345667777777777877778888888989 99999999999999999999999863211 1256
Q ss_pred cccHHHHHHHHHHHHcCCCChhhhHHh-hhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 215 FTSFGTTLYQMFVLFTTSNNPDVWIPA-YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSE 285 (697)
Q Consensus 215 F~~~~~s~~~lf~~~t~~~w~dv~~~~-~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~~~ 285 (697)
|.++..++.++|..+-+. +|...+. .....++.++|++|+++..++++||+||++.++|++..+++..+
T Consensus 556 f~~~~~s~~~lf~~~~G~--~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~ 625 (743)
T TIGR00870 556 YSTLFETSQELFWAIIGL--GDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEE 625 (743)
T ss_pred ccCHHHHHHHHHHHHcCC--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 999999999999887654 3331111 12345677899999999999999999999999999877665443
No 23
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-06 Score=98.39 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHhcc---C-CC---------Cc----cccchh
Q 005426 432 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA---S-PN---------GQ----TFLSNG 494 (697)
Q Consensus 432 ~~ie~~f~~iF~~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~---~-~~---------~~----~~~~~~ 494 (697)
+.+=+..+.-++.|-+-.++..|+..|+++.||++|+..+.+.+...++... . .. .+ +..-.-
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 3333344555788889999999999999999999999877665544433211 0 00 00 000011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccc
Q 005426 495 EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDD 574 (697)
Q Consensus 495 ~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~ 574 (697)
...-+.-++-.+|++-++..++.+.-+..++.+.+..+..+++++.++++.|++=-.|++......-..+.++.....
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~-- 544 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKT-- 544 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccc--
Confidence 133455566667777777777888888888999999999999999999999998666777665432111111111111
Q ss_pred ccccCcCChhhhHHHHHHHhh-hcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005426 575 YLLFNFNDYPNGMVTLFNLLV-MGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 653 (697)
Q Consensus 575 ~~~~nF~~~~~s~~tlf~i~t-~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~ 653 (697)
...|.|+..+.-+||=-.. ..+=..++..+...-...++.+.|.+|.++..++++||.||.+.+.|++..+....+.
T Consensus 545 --~~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEW 622 (822)
T KOG3609|consen 545 --TDSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEW 622 (822)
T ss_pred --ccccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHH
Confidence 1278999999888763332 1110011111111111356789999999999999999999999999999877777666
Q ss_pred h
Q 005426 654 C 654 (697)
Q Consensus 654 ~ 654 (697)
+
T Consensus 623 K 623 (822)
T KOG3609|consen 623 K 623 (822)
T ss_pred H
Confidence 5
No 24
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.49 E-value=2.9e-06 Score=101.31 Aligned_cols=178 Identities=12% Similarity=0.176 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh-----------c----hhhhhhccccchhhhHHHHHHHHHHHHHhhcC-CccCccchh
Q 005426 88 LVYEGITLVILIIHTFFPITYE-----------G----SPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-PIAFNFLPL 151 (697)
Q Consensus 88 ~~~e~~~~~~F~~E~~lk~~~~-----------g----~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~-~~~~~~~~l 151 (697)
.++|.++-++|.+++++++... . .++|++ .|-++|++.++|..+-. ...... .....+..+
T Consensus 95 ~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~i~--~~~~~~~~~~~~~~~l 171 (823)
T PLN03192 95 EIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPFQALA--YLITGTVKLNLSYSLL 171 (823)
T ss_pred eeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHHHH--HHhcCCccchHHHHHH
Confidence 3569999999999999997532 1 146775 48899999999874321 111100 000112233
Q ss_pred eeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccc-------ccc------cc
Q 005426 152 RIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGN-------MVF------TS 217 (697)
Q Consensus 152 r~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~-~~~~~-------~~F------~~ 217 (697)
|++|++|+.|+.+.+..+......-. ..-.+..++++++++.-.+|.+.+.+-.. +.++. .+| ..
T Consensus 172 ~llrl~Rl~ri~~~~~~le~~~~~~~-~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~ 250 (823)
T PLN03192 172 GLLRFWRLRRVKQLFTRLEKDIRFSY-FWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIR 250 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHH
Confidence 33444443333333333322211100 01122233333333333344322222111 11111 112 22
Q ss_pred HHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 218 FGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDS 274 (697)
Q Consensus 218 ~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~ 274 (697)
...|++|.++++||.||+|+ .|......+..+ .++++ +..+....+|.+.+-
T Consensus 251 Yi~slYwai~TmtTVGYGDi-~p~t~~E~i~~i---~~ml~-g~~~~a~~ig~i~~l 302 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDL-HAVNTIEMIFII---FYMLF-NLGLTAYLIGNMTNL 302 (823)
T ss_pred HHHHHHHHHHHHhhccCCCc-CCCccchHHHHH---HHHHH-HHHHHHHHHHHHHHH
Confidence 44599999999999999998 454444443333 33332 223344444444443
No 25
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-05 Score=89.88 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=119.7
Q ss_pred HHHHHHHHH---HHHHHHhHhhhchhhhhhccccchhhhHHHHHHHHHHHHHhhc---CCcc------------------
Q 005426 90 YEGITLVIL---IIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA------------------ 145 (697)
Q Consensus 90 ~e~~~~~~F---~~E~~lk~~~~g~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~---~~~~------------------ 145 (697)
+|.....|. +.|=+-.++..|.+.|+++.||++|++.+.+++..+++...-. ....
T Consensus 386 vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~ 465 (822)
T KOG3609|consen 386 LEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA 465 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence 577776664 3444455666788999999999999999999888877643210 0000
Q ss_pred -CccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-Hhhc---c----c-----ccc
Q 005426 146 -FNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAY-VIFE---D----T-----VQG 211 (697)
Q Consensus 146 -~~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~-~lF~---~----~-----~~~ 211 (697)
..+.+--++-.+|++-+...++.+--+--++-+.+..+...++++.++++-|++ |+ +++. + + ++.
T Consensus 466 E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~i-Gl~qLy~yy~~~~~~~~~~~~~~~ 544 (822)
T KOG3609|consen 466 EGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSI-GLNQLYDYYLNRKTMKIDQDYTKT 544 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-ccchHhhhhcchhhcccccccccc
Confidence 001122345556666666666655555556667778888888877777777774 44 3332 1 1 111
Q ss_pred ccccccHHHHHHHHHHHHc-CCCChhhhHH--hhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 212 NMVFTSFGTTLYQMFVLFT-TSNNPDVWIP--AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 283 (697)
Q Consensus 212 ~~~F~~~~~s~~~lf~~~t-~~~w~dv~~~--~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~ 283 (697)
...|.++..|+.++|=... +.+=.++..+ -.-...+..+-|.+|.++...+++||.+|.+.++||+...++.
T Consensus 545 ~~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~AD 619 (822)
T KOG3609|consen 545 TDSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDAD 619 (822)
T ss_pred ccccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcch
Confidence 1259999888776665442 1221111100 0112234456678888888888999999999999998776543
No 26
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.18 E-value=6.4e-05 Score=89.91 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hh-----c---------chhhhhcc
Q 005426 398 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIY-SY-----G---------FENYWRDG 462 (697)
Q Consensus 398 ~f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~-a~-----g---------~~~y~~~~ 462 (697)
+|+.++.++++.+++...++.... +......+..++.++.++|.+|++++.. ++ | .++|++.
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~--~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~- 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFL--NASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST- 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHee--CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-
Confidence 577888888888888777665432 1122234677899999999999999986 32 1 2578754
Q ss_pred ccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005426 463 QNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCV 542 (697)
Q Consensus 463 wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~ 542 (697)
|.++|++.++...+-.. +. ..... ....+++++++|++|+.|+.+.+..+..-...- ...-.+..++++++++
T Consensus 140 ~f~~Dlis~lP~~~i~~--~~-~~~~~---~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~-~~~~~~~kli~~~l~~ 212 (823)
T PLN03192 140 WFLMDVASTIPFQALAY--LI-TGTVK---LNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFS-YFWIRCARLLSVTLFL 212 (823)
T ss_pred hHHHHHHHHhHHHHHHH--Hh-cCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 77999886654321111 11 11111 111234445555555555544444443322111 1111233344444344
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCC------hhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceee
Q 005426 543 QCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND------YPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTL 616 (697)
Q Consensus 543 ~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~------~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~ 616 (697)
...+|++...+ +...+.. +.+-... . ..||.+ ...|++..+..+|+-|++++. +....-
T Consensus 213 ~H~~aC~~y~i-~~~~~~~----~~~Wi~~-~--~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~-------p~t~~E 277 (823)
T PLN03192 213 VHCAGCLYYLI-ADRYPHQ----GKTWIGA-V--IPNFRETSLWIRYISAIYWSITTMTTVGYGDLH-------AVNTIE 277 (823)
T ss_pred HHHHHHHHHHH-HhhcCCC----CCchHHH-h--hhccccCcHHHHHHHHHHHHHHHHhhccCCCcC-------CCccch
Confidence 44445444333 2211110 0110000 0 012322 445787777777777766652 222334
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 617 AYFVSFYLITVLLLLNLVIAFVLEAFFA 644 (697)
Q Consensus 617 ~yFv~~~~~~~~i~lnlfiavii~~F~~ 644 (697)
..|.+++++.+..+....+|.+.+-..+
T Consensus 278 ~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 278 MIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666667766654443
No 27
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.73 E-value=0.00029 Score=78.81 Aligned_cols=166 Identities=11% Similarity=0.189 Sum_probs=120.3
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCc----cchh-eeechhhhhHhhhccHHHHHHHHHHHHhHHHHHH
Q 005426 111 SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN----FLPL-RIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLN 185 (697)
Q Consensus 111 ~~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~----~~~l-r~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~ 185 (697)
.++||.+.-||+|.++...+++...-... ..... +.++ -.+-..+.+-+++.+|..-..+..+....+.++.
T Consensus 588 k~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk 664 (929)
T KOG0510|consen 588 KRHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLK 664 (929)
T ss_pred HHHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHH
Confidence 36899999999999888777663221110 00000 1111 2244567888888888887777777778888889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCC-h-hhhHHhh-----hcCcchhHHHHHHHHH
Q 005426 186 VLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNN-P-DVWIPAY-----KASRWYCLFFVLYVLI 258 (697)
Q Consensus 186 v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w-~-dv~~~~~-----~~~~~~~i~fi~~~~i 258 (697)
.+.++.++++.|++--+.+|+... .|.|++-|....|++|-+|.- + +...+.+ .+...+.+-|++|+++
T Consensus 665 ~f~vfs~lliaF~lsFYVll~~~~----eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~If 740 (929)
T KOG0510|consen 665 SFMVFSILLIAFGLSFYVLLNKSS----EFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIF 740 (929)
T ss_pred HHHHHHHHHHHhhhhheeeecCCC----CcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHH
Confidence 999999999999988888888744 399999999999999987643 2 2222222 3344556779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 259 GVYFVTNLILAVVYDSFKSQLAKQV 283 (697)
Q Consensus 259 ~~~~~lnl~iavi~~~f~~~~~~~~ 283 (697)
+..+++||.+|.-++.-+...+++.
T Consensus 741 mtIvLMNLLiGLAV~DIq~vqk~A~ 765 (929)
T KOG0510|consen 741 MTIVLMNLLIGLAVGDIQGVQKHAE 765 (929)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999998877665543
No 28
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.45 E-value=0.002 Score=72.28 Aligned_cols=180 Identities=13% Similarity=0.191 Sum_probs=118.3
Q ss_pred HHHHHHHHhhcchhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005426 444 LEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE--WIRYLLLARMLRLIRLLMHVQQYRGF 521 (697)
Q Consensus 444 ~E~ilki~a~g~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~--~l~~lr~lR~lR~lrl~~~~~~l~~l 521 (697)
+-.++.++.. +++|+.+.-|++|+++...+++... +.......+.+ .--+.-.+-+.+++-+++.++.+...
T Consensus 578 ~~E~iQifqq-k~~Y~~~i~Nimew~iyts~li~v~-----~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIf 651 (929)
T KOG0510|consen 578 LRECIQIFQQ-KRHYFMDIENIMEWFIYTSALITVY-----PLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIF 651 (929)
T ss_pred HHHHHHHHHH-HHHHHhhhHHHHHHHHHhhhhheee-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccee
Confidence 3333444433 3699999999999998776654322 11110111222 12233446778888888888887777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcC-HH
Q 005426 522 VATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN-WQ 600 (697)
Q Consensus 522 ~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~-W~ 600 (697)
+..+.....+++..+.+..+++..|++--.-+|+-. ..|.|.+.|.+..|..+.||. ..
T Consensus 652 vvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft 711 (929)
T KOG0510|consen 652 VVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFT 711 (929)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccc
Confidence 777777777777777777677777776555555543 369999999999999998883 22
Q ss_pred HHHHHHH-hhh---CCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005426 601 VWMQSYK-ELT---GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 649 (697)
Q Consensus 601 ~im~~~~-~~~---~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~ 649 (697)
..++.-. +.. ....+.+-|++|.++..++++||.+|+-++--+...+..
T Consensus 712 ~~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 712 KVMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred cccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 2222211 111 124578889999999999999999999887766554433
No 29
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00097 Score=69.10 Aligned_cols=132 Identities=18% Similarity=0.279 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcC
Q 005426 502 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 581 (697)
Q Consensus 502 ~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~ 581 (697)
++-++-++|-+..++....++-|+..++|+++.+.....+++.=|...|.-+.|-. +..|.
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPY-------------------HdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPY-------------------HDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecch-------------------HHhhh
Confidence 45556667777888899999999999999999988777666655555554444432 45788
Q ss_pred ChhhhHHHHHHHhhhcCHHHHHHHHHhhhCC-c--eeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005426 582 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-A--WTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 653 (697)
Q Consensus 582 ~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~-~--~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~ 653 (697)
|...---+||.+.-||+-....-. +..-++ . ++.+|..+|+-+-.+++|+||||+|.|+|.....-.++..
T Consensus 445 sLntvsECLFSLINGDDMFaTFA~-mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~qq~Gf 518 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATFAT-MQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQQDGF 518 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhCCC
Confidence 887777789998888865544321 212111 1 2789999999999999999999999999998766555444
No 30
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.023 Score=67.55 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=99.4
Q ss_pred HHHHHHHhHhhhch-------hhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheee----chhhhhHhhhcc
Q 005426 98 LIIHTFFPITYEGS-------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA----PYIRVVFFILNI 166 (697)
Q Consensus 98 F~~E~~lk~~~~g~-------~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~----R~lR~lrl~~~~ 166 (697)
+++|-+=+++.... +-||.+.||+.|.++++.+++....-.... .....-|++-++ =.+|++-.+..+
T Consensus 835 l~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f~V~ 913 (1381)
T KOG3614|consen 835 LFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYFTVS 913 (1381)
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhheeec
Confidence 45666655543321 469999999999999999888776532210 111122222221 123555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccccccccccccHHHHHHHHHHHHcCCCChhhhH------
Q 005426 167 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVI-FEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI------ 239 (697)
Q Consensus 167 ~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~l-F~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~------ 239 (697)
+.+---+-.+.+.++.++.+++++++.++-|++--=.+ +.+......-|.++. +.-+-++-++-+.+-+.
T Consensus 914 ~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~---y~PYlmifGeV~a~eID~~~~e~ 990 (1381)
T KOG3614|consen 914 KQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIF---YWPYLMLFGEVPADEIDTCTCEK 990 (1381)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH---HHHHHHHhccccHhhhhhhcccc
Confidence 65555555666777888887777777777776432222 222111111233332 22222222333311110
Q ss_pred ---------------Hhhh-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 240 ---------------PAYK-ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 281 (697)
Q Consensus 240 ---------------~~~~-~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~ 281 (697)
|.-. ++....+--++|+++.+.+++||.+|+....|.+..++
T Consensus 991 ~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 991 SFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred cccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 12223445678999999999999999999999876544
No 31
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.28 E-value=0.011 Score=70.00 Aligned_cols=242 Identities=18% Similarity=0.231 Sum_probs=130.2
Q ss_pred HHHHHHHhccccch---HHHHHHHH--HHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 005426 385 PFSEKLKAFIRSTK---FGYMISII--LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYG----- 454 (697)
Q Consensus 385 ~~r~~~~~lv~~~~---f~~~i~~~--i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a~g----- 454 (697)
+..++.+.+...|. +-+++..+ +++-+-.+.++..+ .+ ..++++=++.+.-+++|.+=+++...
T Consensus 779 ~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~--~P----s~~Ew~~~~~iftl~~E~vRq~~~se~~~l~ 852 (1381)
T KOG3614|consen 779 GKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQP--SP----SMWEWILFAWIFTLFLEEVRQIFISESGLLP 852 (1381)
T ss_pred hHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCC--CC----CccchhHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 35666777878774 22333222 22222233333321 11 23333333444556788887777432
Q ss_pred --chhhhhccccchhHHHHHHHHHHhhHhccCCCCccccchhhHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005426 455 --FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYL-LLARMLRLIRLLMHVQQYRGFVATFLTLIPS 531 (697)
Q Consensus 455 --~~~y~~~~wn~~D~~ivi~s~i~~~~~~~~~~~~~~~~~~~~l~~l-r~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~ 531 (697)
.+-||.+.||..|.+.+..-+++..+......... .+.++-.+ -++=.+|++-.+...+.+.--+..+.+.++.
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~---~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~d 929 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIY---SGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKD 929 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcccee---cceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHH
Confidence 25699999999999999888888776655422211 12221111 2233345555555556655555566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHHh---
Q 005426 532 LMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKE--- 608 (697)
Q Consensus 532 l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~--- 608 (697)
++.+++++.+.++.|++.--.+- +..++. .+.=|++ .++.=+-.+-|+-..+-++.+.+
T Consensus 930 mf~flfllaV~LlsfGVarQaIl----~P~e~~-----------~w~l~R~---i~y~PYlmifGeV~a~eID~~~~e~~ 991 (1381)
T KOG3614|consen 930 MFFFLFLLAVVLLSFGVARQAIL----RPDEPR-----------HWWLFRN---IFYWPYLMLFGEVPADEIDTCTCEKS 991 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhc----CCCCCc-----------hHHHHHH---HHHHHHHHHhccccHhhhhhhccccc
Confidence 77777777777777765421111 110000 0011211 11221222224433333333321
Q ss_pred ---------------hh--CCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005426 609 ---------------LT--GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 653 (697)
Q Consensus 609 ---------------~~--~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~ 653 (697)
.| |++..++..+.|.++.+++++||.||+.-..|.+..+...+..
T Consensus 992 ~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iW 1053 (1381)
T KOG3614|consen 992 FCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIW 1053 (1381)
T ss_pred ccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11 2344677888999999999999999999888888766555444
No 32
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.0055 Score=70.10 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh------------ch---hhhhhccccchhhhHHHHHHHHHHHHHhhc------CCccC
Q 005426 88 LVYEGITLVILIIHTFFPITYE------------GS---PIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAF 146 (697)
Q Consensus 88 ~~~e~~~~~~F~~E~~lk~~~~------------g~---~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~------~~~~~ 146 (697)
.+++.+.=++|++.++++.... +. ++|++ .|=++|+++++|. +.++..... .....
T Consensus 120 ~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~ 196 (727)
T KOG0498|consen 120 TVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTI 196 (727)
T ss_pred eeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHH
Confidence 4679999999999999986521 11 47999 9999999999884 333221110 00001
Q ss_pred ccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc--ccc---------
Q 005426 147 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE----DT--VQG--------- 211 (697)
Q Consensus 147 ~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~----~~--~~~--------- 211 (697)
....+-+.|++|+.|+++.+..+....+....+.-.- .+.+++++++.--+.|-..|- .+ +..
T Consensus 197 l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~--~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~ 274 (727)
T KOG0498|consen 197 LVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG--AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLG 274 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccc
Confidence 1223444555555555554455544444433222111 223333333333333333331 00 110
Q ss_pred ----ccc----ccc------HHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 212 ----NMV----FTS------FGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 277 (697)
Q Consensus 212 ----~~~----F~~------~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~ 277 (697)
..+ |.. +..|+||-++.+|+.|++++ ...+..=.+|.|+++++|. +.-|.++-|.+.
T Consensus 275 ~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~----~s~~~~E~iFsi~~mi~Gl-----lL~A~lIGNmt~ 345 (727)
T KOG0498|consen 275 RLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV----HANNMGEKIFSIFIMLFGL-----LLFAYLIGNMTA 345 (727)
T ss_pred cccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc----CCCCcHHHHHHHHHHHHhH-----HHHHHHHhhHHH
Confidence 112 443 34589999999999999998 3333333455555555542 334555556655
Q ss_pred HH
Q 005426 278 QL 279 (697)
Q Consensus 278 ~~ 279 (697)
.-
T Consensus 346 ~i 347 (727)
T KOG0498|consen 346 LL 347 (727)
T ss_pred hH
Confidence 43
No 33
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.14 E-value=0.0046 Score=66.77 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=59.3
Q ss_pred ccchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHH
Q 005426 147 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 226 (697)
Q Consensus 147 ~~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf 226 (697)
....++.+-++++..++.+.+.......++. ..+.++.+..+++|+++|..++++..+ ..+.++.+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~--~~~~s~~dA~y~sv 177 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFS--PPIESLSTAFYFSI 177 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccC--cCCCCHHHHHHhhh
Confidence 3445666666777777766655544322211 234445556677888889888876332 35789999999999
Q ss_pred HHHcCCCChhhhHHhhh
Q 005426 227 VLFTTSNNPDVWIPAYK 243 (697)
Q Consensus 227 ~~~t~~~w~dv~~~~~~ 243 (697)
+++||.||+|+ .|...
T Consensus 178 vt~tTvGyGdi-~p~t~ 193 (393)
T PRK10537 178 VTMSTVGYGDI-VPVSE 193 (393)
T ss_pred eeeecccCCCC-CCCCH
Confidence 99999999998 44433
No 34
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.038 Score=62.60 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=81.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChhhhHHHHHHHhhhcCHHHHHHHHH
Q 005426 528 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 607 (697)
Q Consensus 528 s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tlf~i~t~~~W~~im~~~~ 607 (697)
.+..++.++++..++++=||..-..+|.+-.....+..+. ...+.-....++++.+++++|+.+.+. .++.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~------~dl~ 609 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGM------GDLE 609 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhh------hhhh
Confidence 3577888888888888889988888888765442221111 011111234566899999999988653 2222
Q ss_pred hhhCC---ceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005426 608 ELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 654 (697)
Q Consensus 608 ~~~~~---~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~~ 654 (697)
..... ....+-|++|.++..++++||+||.+-|+|.+..++.+.+..
T Consensus 610 ~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk 659 (782)
T KOG3676|consen 610 ACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWK 659 (782)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Confidence 22222 336788999999999999999999999999998777655443
No 35
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.91 E-value=0.025 Score=64.92 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHH-hh----------cc----h
Q 005426 399 FGYMISIILIVNLVAVIVETTLDIQES-------SLQSVWQEVEFVFGWIYVLEMALKIY-SY----------GF----E 456 (697)
Q Consensus 399 f~~~i~~~i~ln~v~l~~~~~~~~~~~-------~~~~~l~~ie~~f~~iF~~E~ilki~-a~----------g~----~ 456 (697)
+++++.++.+.+.++--++-+....+. .....+.+++.+.-++|+++++++.. ++ .+ .
T Consensus 80 W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~ 159 (727)
T KOG0498|consen 80 WNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAK 159 (727)
T ss_pred HHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHH
Confidence 566666665555554433322111111 13356778888999999999999987 32 11 5
Q ss_pred hhhhccccchhHHHHHHHHHHhhHhccC-CCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH-H
Q 005426 457 NYWRDGQNRFDFLVTWVIVIGETITLAS-PNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLM-P 534 (697)
Q Consensus 457 ~y~~~~wn~~D~~ivi~s~i~~~~~~~~-~~~~~~~~~~~~l~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~-~ 534 (697)
+|++ .|-++|++.++. ++.++.... .+............++...|+.|+.|+++.++++..-......+.-.-. .
T Consensus 160 rYl~-twFiiDlis~lP--~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ 236 (727)
T KOG0498|consen 160 RYLK-TWFLIDLISTLP--FDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAAL 236 (727)
T ss_pred HHHh-hhHHHHHHHhcC--hhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 8888 899999987763 122211111 0000000112356778888888888888888887776655554433221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc-cCCCCCCCCcccc----ccccc--cCcCChhhhH------HHHHHHhhhcCHHH
Q 005426 535 YLGTIFCVQCIYCSLGVQIFGGIVN-AGNAKLEETDLAD----DDYLL--FNFNDYPNGM------VTLFNLLVMGNWQV 601 (697)
Q Consensus 535 ~~~l~~~~~~ifAi~G~~lF~~~~~-~~~~~~~~~~~~~----~~~~~--~nF~~~~~s~------~tlf~i~t~~~W~~ 601 (697)
.+++.++.....|.+ .++-+.... .|... . +..+. ..++. ++|..+..+. +.-++-+|.-|
T Consensus 237 ll~~~~l~sH~~gc~-wYlia~~~~~~~~~~-~-tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG--- 310 (727)
T KOG0498|consen 237 LLSVYLLASHWAGCI-WYLIAIERPASCPRK-A-TWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVG--- 310 (727)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhcccccCccc-c-ccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhcc---
Confidence 111111111122211 222222222 12221 0 11110 01111 2255554443 22122222221
Q ss_pred HHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005426 602 WMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 647 (697)
Q Consensus 602 im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~ 647 (697)
+.+.+++..+=..|.+++++.+.++..++||-+-.--+..+.
T Consensus 311 ----~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 311 ----YGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred ----CCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 334455566777888888888888888888865433333333
No 36
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.89 E-value=0.00047 Score=73.67 Aligned_cols=137 Identities=11% Similarity=0.166 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhchh-hhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchheeechhhhhHhhhcc
Q 005426 88 LVYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 166 (697)
Q Consensus 88 ~~~e~~~~~~F~~E~~lk~~~~g~~-~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~~R~lR~lrl~~~~ 166 (697)
.-+|..|.++|.+-+.+|.++..-| -||-....++|++.+=++++.+-+. +..--+|.||.+|+.+.
T Consensus 165 qqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~-----------r~wlglrflralrlmtv- 232 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN-----------RSWLGLRFLRALRLMTV- 232 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec-----------cchHHHHHHHHHHhccH-
Confidence 3468889999999999999987665 4677888999999888877643221 11112444555555533
Q ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH-HhhccccccccccccH-----HHHHHHHHHHHcCCCChhhh
Q 005426 167 RQLRDTLFVLAGML-GTYLNVLALGLLFLLFSSWLAY-VIFEDTVQGNMVFTSF-----GTTLYQMFVLFTTSNNPDVW 238 (697)
Q Consensus 167 ~~lr~l~~~l~~s~-~~l~~v~~l~~~~~~ifai~g~-~lF~~~~~~~~~F~~~-----~~s~~~lf~~~t~~~w~dv~ 238 (697)
|.+-..+..++.|- -.+..+.-++.-.++.-| |. .+..+..++..+|.|- ..+.+-+.++|+|+||+|++
T Consensus 233 pdilqylnilktsssirl~qlvsifisvwltaa--g~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvy 309 (1103)
T KOG1420|consen 233 PDILQYLNILKTSSSIRLVQLVSIFISVWLTAA--GFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVY 309 (1103)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHhhc--ceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecccccee
Confidence 33333334443321 123333333322333333 22 2222322334456543 34555678899999999993
No 37
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.69 E-value=0.017 Score=67.48 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=43.2
Q ss_pred hhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005426 158 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED 207 (697)
Q Consensus 158 R~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~ 207 (697)
-.+-++-+-..|..++++..+--+.+....++-++++|+||++|+.+|.+
T Consensus 2397 LLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkd 2446 (2706)
T KOG3533|consen 2397 LLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKD 2446 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556666678899999999999999999999999999999999999973
No 38
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.66 E-value=0.13 Score=60.70 Aligned_cols=146 Identities=12% Similarity=0.148 Sum_probs=80.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CCC------------------C
Q 005426 509 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NAK------------------L 565 (697)
Q Consensus 509 lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~-----~~~------------------~ 565 (697)
+-++.+=..+..++.++-+--+++..-.++-+++.|.|+++|...|++.++-. |.. .
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc 2478 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETC 2478 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccC
Confidence 33333444566666666666667777777778889999999999999976321 000 0
Q ss_pred CCCcc---ccccccc-cCcCChhhhHHHHHHHhh---------hcCHHHHHHHHHhhhC-CceeeeehhhHHHHHHHHHH
Q 005426 566 EETDL---ADDDYLL-FNFNDYPNGMVTLFNLLV---------MGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLLL 631 (697)
Q Consensus 566 ~~~~~---~~~~~~~-~nF~~~~~s~~tlf~i~t---------~~~W~~im~~~~~~~~-~~~~~~yFv~~~~~~~~i~l 631 (697)
++.++ .+.+-+. ..=+.--.|.=||+.|.. |+|-++++..-...-+ -.+-.+|=..|+++..+|++
T Consensus 2479 ~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVL 2558 (2706)
T KOG3533|consen 2479 PSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVL 2558 (2706)
T ss_pred CCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000000 011122233333333332 3344444421000000 02345677888889999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Q 005426 632 NLVIAFVLEAFFAEMELESSEKC 654 (697)
Q Consensus 632 nlfiavii~~F~~~~~~~~~~~~ 654 (697)
||.-|+|+|.|.+...+..++++
T Consensus 2559 NLIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2559 NLIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHHhhhhhHHHHHhhhhHHHH
Confidence 99999999999987665554443
No 39
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.17 E-value=0.26 Score=56.12 Aligned_cols=99 Identities=21% Similarity=0.388 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------ccccccHHHHHHHHHHHHcCCCChhhhHHhhhcC-
Q 005426 180 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-------------NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS- 245 (697)
Q Consensus 180 ~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~-------------~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~- 245 (697)
+..+...+++.+++++-||..-+.+|.+...+ ....++++.+++++|...- |.+|. +...+.
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~fti--g~~dl--~~~~~~~ 615 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTI--GMGDL--EACENTD 615 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhh--hhhhh--hhccccc
Confidence 67888999999999999999899999864322 1235667888888888744 55553 333333
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 246 --RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 282 (697)
Q Consensus 246 --~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~ 282 (697)
...-+-|++|+++...+++|++||...++|.+..+++
T Consensus 616 ~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 616 YPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 3345669999999999999999999999999876654
No 40
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.068 Score=55.91 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=75.9
Q ss_pred hhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhh
Q 005426 158 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDV 237 (697)
Q Consensus 158 R~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv 237 (697)
-++|-+..+..-.+++-|+.+++|.++..+.-..++.+-|..-|....|. -...|.|+...--.+|.+.- +|-
T Consensus 389 GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP---YHdKFrsLntvsECLFSLIN----GDD 461 (566)
T KOG3733|consen 389 GVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP---YHDKFRSLNTVSECLFSLIN----GDD 461 (566)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc---hHHhhhhHHHHHHHHHHhhC----chh
Confidence 44455555678889999999999987775444333333333223333332 23458888888888888876 455
Q ss_pred hHHhh----hcCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 238 WIPAY----KASRWYC----LFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 280 (697)
Q Consensus 238 ~~~~~----~~~~~~~----i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~ 280 (697)
|-.+. ..+.+.| +|.-+|+-+--|++++||+|+|.++|...++
T Consensus 462 MFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 462 MFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 54332 2333443 5666777777788999999999999986554
No 41
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=95.76 E-value=0.045 Score=44.70 Aligned_cols=76 Identities=28% Similarity=0.346 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 005426 191 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 270 (697)
Q Consensus 191 ~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iav 270 (697)
+++++.+|.+.+.+ ++ + ..-.++.+|++..+.++||.|++|+ .|.... .-++. +...+.+..++.+.++.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi-~p~t~~---gr~~~-~~~~~~G~~~~~~~~~~ 72 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDI-VPQTPA---GRIFT-IIYMLIGIFLFALFLSV 72 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSS-STSSHH---HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCc-cCCccc---hHHHH-HHHHHHHHHHHHHHHHH
Confidence 34445555444444 22 2 3357889999999999999999999 443332 23333 33333344566777777
Q ss_pred HHHHHH
Q 005426 271 VYDSFK 276 (697)
Q Consensus 271 i~~~f~ 276 (697)
+.+-+.
T Consensus 73 ~~~~l~ 78 (79)
T PF07885_consen 73 LASVLT 78 (79)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
No 42
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.35 Score=51.56 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchh
Q 005426 170 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYC 249 (697)
Q Consensus 170 r~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ 249 (697)
|-+++++...-|.. -++.+.+.++++-|++-.+--......+ .=.|+.+|+|..-+++-+.||||+ +|-...+...+
T Consensus 242 rFV~Kt~M~~~Pg~-vL~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDi-VP~TycGr~v~ 318 (489)
T KOG3684|consen 242 RFVLKTLMTICPGT-VLLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDI-VPNTYCGRGVA 318 (489)
T ss_pred hhhHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCcc-cCCccccchHH
Confidence 34445555444432 2334444555555555444333222111 345788999999999999999999 66666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 250 LFFVLYVLIGVYFVTNLILAVVYDSFKSQ 278 (697)
Q Consensus 250 i~fi~~~~i~~~~~lnl~iavi~~~f~~~ 278 (697)
+...+... ..-++.+|||-.+....
T Consensus 319 l~tGivGa----~~sallvAvisRKLeLt 343 (489)
T KOG3684|consen 319 LLTGIVGA----GCSSLLVAVIARKLELT 343 (489)
T ss_pred HHhhhhhh----hHHHHHHHHHHHHHHHH
Confidence 54333332 36789999998877643
No 43
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.20 E-value=0.091 Score=41.03 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=49.0
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
++++|+.++.+++|.++.++..+....+..... +.......+.++...|.++++.++.+||.+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 578899999999999999998887776643222 2223345566688999999999999998754
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=92.77 E-value=0.89 Score=37.78 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhc--cccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 290 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 290 ~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
+.+.+.++|+.++. +++|.++.++....++...........+..+...+....+.++++.++.++|..+....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34457889999999 79999999988777654211111133467788899999999999999999998876554
No 45
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.00 E-value=0.093 Score=56.76 Aligned_cols=45 Identities=11% Similarity=0.276 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch-hhhhccccchhHHHHHHHH
Q 005426 431 WQEVEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWVIV 475 (697)
Q Consensus 431 l~~ie~~f~~iF~~E~ilki~a~g~~-~y~~~~wn~~D~~ivi~s~ 475 (697)
-..++..|.++|.+-+.+|.+|..-+ =|+-....++|++.+-.++
T Consensus 164 tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsf 209 (1103)
T KOG1420|consen 164 TQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSF 209 (1103)
T ss_pred HHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchh
Confidence 35688899999999999999976532 2445556667776554443
No 46
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=91.00 E-value=1.7 Score=44.55 Aligned_cols=78 Identities=18% Similarity=0.332 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHcCCCChhhhH----HhhhcCcchhHHHHHHH
Q 005426 181 GTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI----PAYKASRWYCLFFVLYV 256 (697)
Q Consensus 181 ~~l~~v~~l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~----~~~~~~~~~~i~fi~~~ 256 (697)
+..-+++++++..-.+-...|...|..- |+..+|| |++-.|+++||-|++|... .++...+.+..+-++|+
T Consensus 155 ~S~~~l~~i~~~~~~~~i~~gaa~fs~~-E~Wsyfd----s~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI 229 (350)
T KOG4404|consen 155 VSVYNLVLILFTACILLICCGAAMFSSV-EGWSYFD----SYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI 229 (350)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHhhcc-cCcchhh----hhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence 3444544444433333333377777753 4555565 6778899999999999842 33445555555555666
Q ss_pred HHHHHHH
Q 005426 257 LIGVYFV 263 (697)
Q Consensus 257 ~i~~~~~ 263 (697)
++|.-++
T Consensus 230 L~Gl~vi 236 (350)
T KOG4404|consen 230 LLGLCVI 236 (350)
T ss_pred HHHHHHH
Confidence 6554433
No 47
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.96 E-value=4.7 Score=43.75 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccc
Q 005426 498 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 577 (697)
Q Consensus 498 ~~lr~lR~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~ 577 (697)
+.++++-++++..+++..+.+.....+... + +.++.+.....|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----l--~~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAGT----L--FAVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 456667777777777777766665322221 1 1222234455788888887765321
Q ss_pred cCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHH
Q 005426 578 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVL 628 (697)
Q Consensus 578 ~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~ 628 (697)
..+.++..|++..+..+|+-|++++. ..+..+.++-++++++|..
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~------p~t~~grl~~i~~ii~Gi~ 208 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIV------PVSESARLFTISVIILGIT 208 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCC------CCCHHHHHHHHHHHHHHHH
Confidence 14668889998777777777766652 1123344555555544433
No 48
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=90.62 E-value=1.2 Score=37.25 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhc-cccCccCHHHHHHHHHH-hhhcCCCCCCCh-HHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 292 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 292 ~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
..+.++|+..+. +++|+++.++.+..+.. +. ..++. .+.+.+...+|.++++.++.+||..+...+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356788999999 99999999998887765 42 12445 788999999999999999999997765443
No 49
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.93 E-value=2.5 Score=35.80 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHhh
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALR 365 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~ 365 (697)
...+.++|+.++.+++|.++.++....++.. ..+..+...++...+.++++.++.+||..+...+...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 3467889999999999999999877766542 2456778889999999999999999998887665443
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.82 E-value=2.5 Score=35.64 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHhhh-ccccC-ccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 293 TLGKAFNLID-NYNVG-FLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 293 ~l~~~~~~l~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
.+.++|+..+ .+++| .++.++..+.+..........+.+..+.+.+..++|.++++.++.+||..+...+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3567788888 56887 4999998777755321111123366788999999999999999999998876544
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.83 E-value=2.5 Score=35.67 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhc-cc-cCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHh
Q 005426 292 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 364 (697)
Q Consensus 292 ~~l~~~~~~l~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~ 364 (697)
..+.++|+..+. ++ +|.++.++....++..-...-..+.+..+.+.+..+.+.++++.++.+||..+......
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 447788999987 76 69999999887766421110012345678888999999999999999999887665443
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=88.71 E-value=2.3 Score=35.43 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=52.3
Q ss_pred HHHHHHHhhh-ccccC-ccCHHHHHHHHHH-hhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 293 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 293 ~l~~~~~~l~-~~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
.+.++|+..+ ++++| .++.++...+++. +... .....+..+.+.+..+.|.+++++++.+||..+...+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~-lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHF-LEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHH-hcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678899997 68999 5999998887765 1111 1233466778999999999999999999998775443
No 53
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=87.45 E-value=4.2 Score=34.06 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHHHHhhh-ccccCc-cCHHHHHHHHHH-hhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 292 RTLGKAFNLID-NYNVGF-LNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 292 ~~l~~~~~~l~-~~~~~~-~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
..+.++|+..+ .+++|+ ++.++....++. +..... ...+..+.+.++...|.++++.++.+||..+...
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 34788999997 899995 999998887764 422111 1346678889999999999999999999776543
No 54
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=87.43 E-value=1.6 Score=40.56 Aligned_cols=64 Identities=28% Similarity=0.471 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
++.+++||+..+.+++|+++..+.......+ -.+.+.++.+.+..+.+.+++|.++.++|.+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 4568899999999999999999877766654 356788999999999999999999999997654
No 55
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=86.18 E-value=11 Score=41.67 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhh--ch------------hhhhhccccchhhhHHHHHH
Q 005426 89 VYEGITLVILIIHTFFPITYE--GS------------PIFWKSTYTRLKVLCLLILV 131 (697)
Q Consensus 89 ~~e~~~~~~F~~E~~lk~~~~--g~------------~~y~~~~~n~~D~~~v~~~~ 131 (697)
++|.+.=++|.+++++.+... |+ ..|+| .|-++|++..+++=
T Consensus 253 vvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlK-sWFvIDLLSCLPYD 308 (971)
T KOG0501|consen 253 VVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLK-SWFVIDLLSCLPYD 308 (971)
T ss_pred EecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHH-HHHHHHHHhcccHH
Confidence 457788888999999886531 21 24665 48889988887763
No 56
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.14 E-value=3.8 Score=31.57 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=48.7
Q ss_pred HHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHH
Q 005426 295 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 363 (697)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~ 363 (697)
+++|+.++.+++|.++.++....+..+. .+..+...++...+.++++.++.+||......+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 3578888999999999998776665431 2567788889999999999999999987765543
No 57
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.92 E-value=10 Score=41.28 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=67.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhHhh----hch---------hhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCc
Q 005426 81 YLTGWESLVYEGITLVILIIHTFFPITY----EGS---------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN 147 (697)
Q Consensus 81 ~l~~~~~~~~e~~~~~~F~~E~~lk~~~----~g~---------~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~ 147 (697)
|+..| ..+++++=.+|++.++++..- .|. ++|+.+.--.+|++.++|. |++... . ..
T Consensus 27 y~~~w--l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~----~--~~ 96 (536)
T KOG0500|consen 27 YLENW--LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFK----D--GS 96 (536)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhc----C--Cc
Confidence 44444 788999999999999988642 232 5788888888998888884 333221 1 13
Q ss_pred cchheeechhhhhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005426 148 FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF 205 (697)
Q Consensus 148 ~~~lr~~R~lR~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF 205 (697)
....|+.|.+|+.|+...+..... ....|.+..+..+...++++|-+=|=.+|
T Consensus 97 ~~~~r~nRllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf 149 (536)
T KOG0500|consen 97 ASLERLNRLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYF 149 (536)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334456666666666654432221 22456666666666666666655554444
No 58
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=85.83 E-value=1.6 Score=42.11 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCC------CCCChHHHHHHHhhhcccCCCCCChhhhHHHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL------PNISREEFELIFDELDDTHDFKINLDEFADLCN 360 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~ 360 (697)
+..+|++.+.+++|+++++++.+..+.+.+.... +....+..+.++..+|.++|+.++.+||.+-+.
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4577999999999999999998887765443332 333556778999999999999999999987764
No 59
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=85.07 E-value=6.3 Score=32.90 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=48.7
Q ss_pred HHHHHHHh-hhccccC-ccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 293 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 293 ~l~~~~~~-l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
.+..+|+. .+.++++ .++.++...++...-......+....+.+.+..+.|.++++.++.+||..+...+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677777 5565655 8999988777665321111123356778889999999999999999998765443
No 60
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=84.71 E-value=6.6 Score=41.59 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=43.4
Q ss_pred cccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 213 MVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 278 (697)
Q Consensus 213 ~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~ 278 (697)
.+.+++..+|+--.+++||.|||.. + ....-..+.+.+..-.+.+.++..+.+|+++..|++-
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-~--~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-Y--PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-E--B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ecccchhhheeEEEEEEEEeccCCc-c--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4578999999999999999999984 1 1223334555566677777888889999998877653
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=82.23 E-value=7.3 Score=34.33 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 289 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 289 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
..+..+..+|..++.+++|.++.++...+. + .........++...|.++++.++.+||....
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445678899999999999999999865442 1 1124556778899999999999999997765
No 62
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=81.70 E-value=2 Score=51.13 Aligned_cols=138 Identities=15% Similarity=0.270 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccccccccccCcCChh
Q 005426 505 MLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYP 584 (697)
Q Consensus 505 ~lR~lrl~~~~~~l~~l~~tl~~s~~~l~~~~~l~~~~~~ifAi~G~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~ 584 (697)
...++-+.--++.+|.++.++.+--+.+.-...++..+.|.|.+++..+|..-.+..++.+.+.. .=|+..
T Consensus 4792 aahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdm---------kcddml 4862 (5019)
T KOG2243|consen 4792 AAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDM---------KCDDML 4862 (5019)
T ss_pred HHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCc---------cchhhH
Confidence 34455555566777777766665555554455666788899999999999865544332222111 112222
Q ss_pred hhHHHHHHHhh----hcCHHHHHHH-HHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005426 585 NGMVTLFNLLV----MGNWQVWMQS-YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 654 (697)
Q Consensus 585 ~s~~tlf~i~t----~~~W~~im~~-~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~~~~~~~~ 654 (697)
... +|.+-. +.|-++=..+ +.|.. ..+-.+|=+.|.++...|++.+.-|.|+|+|.+..+++++-.+
T Consensus 4863 tcy--lfhmyvgvragggigdeiedpagd~y-eiyriifditffffvivillaiiqgliidafgelrdqqeqvke 4934 (5019)
T KOG2243|consen 4863 TCY--LFHMYVGVRAGGGIGDEIEDPAGDEY-EIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKE 4934 (5019)
T ss_pred HHH--hhheeeeeecCCcccccccCCCCCcc-eeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHHh
Confidence 211 222221 2222221111 11111 2456788899999999999999999999999987766555443
No 63
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=80.88 E-value=22 Score=39.46 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hcc------------hhhhhcc
Q 005426 397 TKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYS--YGF------------ENYWRDG 462 (697)
Q Consensus 397 ~~f~~~i~~~i~ln~v~l~~~~~~~~~~~~~~~~l~~ie~~f~~iF~~E~ilki~a--~g~------------~~y~~~~ 462 (697)
..++|.++++.+-..+.+-..-.. .........|..+|.+.-.||.+++++.... -|+ ..|+++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNvaF-Knk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs- 295 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVAF-KNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS- 295 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeeee-cccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-
Confidence 346777766655444433222111 0111123356667788888999999998763 132 367664
Q ss_pred ccchhHHHHH
Q 005426 463 QNRFDFLVTW 472 (697)
Q Consensus 463 wn~~D~~ivi 472 (697)
|-++|++-.+
T Consensus 296 WFvIDLLSCL 305 (971)
T KOG0501|consen 296 WFVIDLLSCL 305 (971)
T ss_pred HHHHHHHhcc
Confidence 7788877544
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=79.95 E-value=6.6 Score=28.90 Aligned_cols=60 Identities=30% Similarity=0.497 Sum_probs=46.2
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
+.++|+..+.+.+|.++.++.....+.+. +..+......++...+.++++.++.++|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 35667888888999999998777766553 4456777788888888888899998887643
No 65
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=79.71 E-value=11 Score=34.77 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
...+.+||++.+.+.+|.++.........++ .+.+++.+...+.++-+..+++.++.+||..+.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3457889999999999999999887777777 478899999999999999999999999997653
No 66
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=78.33 E-value=9.2 Score=35.36 Aligned_cols=67 Identities=28% Similarity=0.394 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
...++++|+..+.+++|.++.++....++.+.. ..+..+...+.++.+.++++.++.+||..+....
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-----~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-----NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 345788999999999999999998888877743 3567888999999999999999999998886543
No 67
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=78.19 E-value=11 Score=35.10 Aligned_cols=66 Identities=24% Similarity=0.433 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 363 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~ 363 (697)
+.+.+||+.++++++|.+++++..+.++.+.. ..++.+...++++.+. +++.++.++|...+....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-----~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGF-----NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-----CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 45789999999999999999998888776643 3356778888888888 888999999988876543
No 68
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.50 E-value=89 Score=34.38 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh----hcc---------hhhhhccccchhHHH
Q 005426 426 SLQSVWQEVEFVFGWIYVLEMALKIYS----YGF---------ENYWRDGQNRFDFLV 470 (697)
Q Consensus 426 ~~~~~l~~ie~~f~~iF~~E~ilki~a----~g~---------~~y~~~~wn~~D~~i 470 (697)
.+-..|-.+|+.+=.+|+++++++... .|. +.|+.+.--.+|.+.
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~ 83 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLS 83 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhh
Confidence 345678889999999999999998762 232 456555555555553
No 69
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=77.22 E-value=9.1 Score=35.39 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
.+.+.+||+..+.+++|+++.++..+.+..+. .+.+..+...+..+.+.++++.++.++|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~ 146 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKM 146 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHH
Confidence 45688999999999999999999877777663 3455888888999999999999988877654
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=76.13 E-value=20 Score=29.74 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=41.3
Q ss_pred ccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 305 NVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
.++.++.++...++.............+.+.+.++...|.++++.++.+||..+...+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4678888888777753211111122347888999999999999999999998776544
No 71
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=75.84 E-value=6.9 Score=28.74 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHHH
Q 005426 312 EQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 362 (697)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 362 (697)
++..++++.++ .++++.....+|.+.|+++++.++.+||.+.++.+
T Consensus 5 ~Evk~lLk~~N-----I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 5 KEVKKLLKMMN-----IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34444555553 45677778889999999999999999998887653
No 72
>PTZ00183 centrin; Provisional
Probab=75.37 E-value=11 Score=34.53 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
..+..+|+.++.+++|.++.++........ .+.++..+...++...+.++++.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999999998876666544 245788888999999999999999999987664
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=75.13 E-value=14 Score=30.89 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=36.4
Q ss_pred CccCHHHHHHHHH-HhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 307 GFLNKEQCIKLFE-ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 307 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
+.+++.+..++++ ++...-. ........+.++..+|.++|+.++..||..+.-.
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3566666655553 2322222 2335667788999999999999999999877543
No 74
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=72.78 E-value=5.6 Score=47.69 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=72.1
Q ss_pred hhHhhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cccccccccccHHHHHH-HHHHHHc
Q 005426 159 VVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE-------DTVQGNMVFTSFGTTLY-QMFVLFT 230 (697)
Q Consensus 159 ~lrl~~~~~~lr~l~~~l~~s~~~l~~v~~l~~~~~~ifai~g~~lF~-------~~~~~~~~F~~~~~s~~-~lf~~~t 230 (697)
.+-+...++.+|.++.+....-+.+....-++.+++++|.+++..+|+ +.++++..-|++....+ -+++-.-
T Consensus 4795 lldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvr 4874 (5019)
T KOG2243|consen 4795 LLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVR 4874 (5019)
T ss_pred HHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeee
Confidence 344444556666666665555555666667888999999999999997 22344555666555422 2222111
Q ss_pred -CCCChhhh-HHhhhcCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 231 -TSNNPDVW-IPAYKASR-WYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 283 (697)
Q Consensus 231 -~~~w~dv~-~~~~~~~~-~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~~~~~~ 283 (697)
+-|-+|-. .|+-.... +-.+|=|.|.++.-.+++.+.-|.|++.|-+.+.+++
T Consensus 4875 agggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqe 4930 (5019)
T KOG2243|consen 4875 AGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQE 4930 (5019)
T ss_pred cCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHH
Confidence 12233332 23332222 2233434444444455889999999999988765543
No 75
>PTZ00184 calmodulin; Provisional
Probab=70.44 E-value=16 Score=33.08 Aligned_cols=60 Identities=25% Similarity=0.437 Sum_probs=48.9
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
+..+|+..+.+++|.+++++..+..... .+..+..+...++...+.++++.++.+||...
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 4677888999999999999877766554 24567788888999999999999999998655
No 76
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=70.43 E-value=9.5 Score=36.71 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCC--CCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL--PNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
.+++=||+..+.+++|.+++++.....+.+-..... ......-.+..+.+-|.+++|+|+.+||.+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 457788999999999999999987777666432221 11122233566777889999999999987664
No 77
>PTZ00184 calmodulin; Provisional
Probab=68.28 E-value=25 Score=31.76 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 360 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~ 360 (697)
+.+.+.|+.++.+++|.++.++.......+. ......+...++...+.++++.++.++|.....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4567888999999999999999877665543 123456778888889999999999999876643
No 78
>PTZ00183 centrin; Provisional
Probab=67.89 E-value=26 Score=32.06 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 360 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~ 360 (697)
+.+.++|..++.+++|.++.++....++.+. ..........++...+.++++.++.+||.....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4578889999999999999999877766552 123456788888899999999999999977643
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=65.88 E-value=53 Score=27.24 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=47.0
Q ss_pred HHHHHHhhhc-cc-cCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 294 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 294 l~~~~~~l~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
+...|++.+. ++ +|+++.++..+.+.... ....+.+.++.+.++...|.++++.++.+||..+...
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~--~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKEL--TIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 3445555554 44 78999998777664311 1124467889999999999999999999999766543
No 80
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=65.81 E-value=8.1 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.6
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEE 320 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~ 320 (697)
++++|+..+.+++|.++.++....++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567899999999999999997766554
No 81
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.30 E-value=1.5e+02 Score=33.55 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHH-----hHhhhch---------hhhhhccccchhhhHHHHHHHHHHHHHhhcCCccCccchhee
Q 005426 88 LVYEGITLVILIIHTFF-----PITYEGS---------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 153 (697)
Q Consensus 88 ~~~e~~~~~~F~~E~~l-----k~~~~g~---------~~y~~~~~n~~D~~~v~~~~i~~~~~~~~~~~~~~~~~~lr~ 153 (697)
++.|++|=+++++.+++ +...-|. +.|.++.---+|++.+++.= ++.... +...++|+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPld--llY~~~------G~~p~wR~ 335 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLD--LLYLFF------GFNPMWRA 335 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHH--HHHHHh------ccchhhhh
Confidence 67899999999999883 2222232 57999988899999888843 222211 12223444
Q ss_pred echhhhhHhhhccHHHHHHHH--HHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhccccccccccccHHHHHH-----
Q 005426 154 APYIRVVFFILNIRQLRDTLF--VLAGMLGTYLNVLA---LGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLY----- 223 (697)
Q Consensus 154 ~R~lR~lrl~~~~~~lr~l~~--~l~~s~~~l~~v~~---l~~~~~~ifai~g~~lF~~~~~~~~~F~~~~~s~~----- 223 (697)
=|+|+.--+.-.+..|-.++. -+.+.++.++.++. +-.++.|-+| .++-+|. .+.-||.-+++..
T Consensus 336 ~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~S--ayqglG~---~rWVydg~Gn~YiRCyyf 410 (815)
T KOG0499|consen 336 NRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWAS--AYQGLGT---TRWVYDGEGNEYIRCYYF 410 (815)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHH--hhccccc---ceeEEcCCCCceeeehhh
Confidence 444444333333444444442 12333444444433 4445555555 7776764 2344665555432
Q ss_pred HHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 224 QMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 276 (697)
Q Consensus 224 ~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~ 276 (697)
++=...|.-|-|+- ....=+-|...-.+++.|+.++.+|-+=|--.
T Consensus 411 a~kt~~tiG~~P~P-------~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 411 AVKTLITIGGLPEP-------QTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred HHHHHHHhcCCCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333333333432 01111223334445556666777776655443
No 82
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=65.06 E-value=5.6 Score=25.44 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.8
Q ss_pred HHHHHhhhcccCCCCCChhhhHHHHH
Q 005426 335 FELIFDELDDTHDFKINLDEFADLCN 360 (697)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~ef~~~~~ 360 (697)
.+.++...|++++|.++.+||.+...
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45678899999999999999987653
No 83
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=63.94 E-value=14 Score=27.07 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=36.9
Q ss_pred cCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 306 VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
+|.++.++....+..+. .+..+..+.+.++...|.+++|.++.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~g----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTT----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 46667776655553331 122788889999999999999999999997653
No 84
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=63.76 E-value=50 Score=35.17 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=10.9
Q ss_pred chhchHHHHHHHHhhcccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQKS 694 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~ 694 (697)
++.|....+.+..+-.+++++
T Consensus 235 r~R~~~re~~~~~m~~~V~~A 255 (342)
T TIGR01404 235 KRRELHQEILSEQLKSDVKRS 255 (342)
T ss_pred HHHHHHHHHHHhhhhccCCCC
Confidence 444555555555555555543
No 85
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=59.82 E-value=63 Score=34.49 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=9.9
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|....+.+..+-.++++
T Consensus 236 rrR~~~re~~~~~m~~~V~~ 255 (349)
T PRK12721 236 KRRELQSEIQSGSLANNVKK 255 (349)
T ss_pred HHHHHHHHHHHhhhhccCCC
Confidence 34444455555544445554
No 86
>PRK06298 type III secretion system protein; Validated
Probab=57.08 E-value=74 Score=34.04 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=11.0
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
+|.|....+.++.+..++++
T Consensus 237 rrR~~~re~~~~~m~~~V~~ 256 (356)
T PRK06298 237 RRRQIAQEIAYEDTSSQVKH 256 (356)
T ss_pred HHHHHHHHHHHhHHhhcCCC
Confidence 45555555656555555554
No 87
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=56.71 E-value=2.5 Score=42.55 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.8
Q ss_pred CcHHHHHHHhccccchHHHHHHHHH
Q 005426 383 HSPFSEKLKAFIRSTKFGYMISIIL 407 (697)
Q Consensus 383 ~~~~r~~~~~lv~~~~f~~~i~~~i 407 (697)
+..+|+.|+++|+|+||+.+|+++|
T Consensus 215 W~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 215 WWNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHHhhheeeecccchhheeeeeC
Confidence 3568999999999999999998764
No 88
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.17 E-value=1.9e+02 Score=32.77 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----h-c---------chhhhhccccchhHHHHH
Q 005426 428 QSVWQEVEFVFGWIYVLEMALKIYS----Y-G---------FENYWRDGQNRFDFLVTW 472 (697)
Q Consensus 428 ~~~l~~ie~~f~~iF~~E~ilki~a----~-g---------~~~y~~~~wn~~D~~ivi 472 (697)
-..|-++|++|-++|++++++=--- . | .+.|.++.--.+|++.++
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiL 318 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSIL 318 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhh
Confidence 3568889999999999998852111 1 1 157888877778887554
No 89
>PRK08156 type III secretion system protein SpaS; Validated
Probab=54.13 E-value=1.4e+02 Score=31.94 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=9.5
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|....+.++.+-.++++
T Consensus 231 r~R~~~re~a~~rm~~~Vp~ 250 (361)
T PRK08156 231 KRREAHQEILSEQVKSDIRN 250 (361)
T ss_pred HHHHHHHHHHHhHHhccCCC
Confidence 34444444545455444544
No 90
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=52.24 E-value=18 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=21.3
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFE 319 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (697)
++++|+..+.+++|.++.++....++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57889999999999999999776655
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=49.86 E-value=18 Score=22.09 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.1
Q ss_pred HHHHHHhhhccccCccCHHHHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIK 316 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~ 316 (697)
++++|+.++.+++|.++.++..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 45678999999999999988654
No 92
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=48.69 E-value=1e+02 Score=33.51 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
+..+..+|+..|.+++|.++.++... .+.++...|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45677889999999999999987521 356788999999999999999887643
No 93
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=47.47 E-value=67 Score=34.13 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=39.2
Q ss_pred ccccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 212 NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSF 275 (697)
Q Consensus 212 ~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f 275 (697)
-.+-+++..||+--+.+-||-|||-- ++.-... .+++.+++-.+.+.++=.+.+|+++...
T Consensus 107 V~nV~sf~sAFLFSiETQtTIGYG~R-~vTeeCP--~aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 107 VMNVHSFTSAFLFSIETQTTIGYGFR-YVTEECP--EAIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred eeeccchhhhheeeeeeeeeeecccc-ccCccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999875 3333322 3455555555555555555555555443
No 94
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=47.34 E-value=1.3e+02 Score=32.32 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=10.1
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|....+.++.+..++++
T Consensus 245 r~Rq~~re~~~~~m~~~V~~ 264 (358)
T PRK13109 245 RLRSLAQDRARNRMLANVPR 264 (358)
T ss_pred HHHHHHHHHHHhhHhhcCCC
Confidence 44444555555555555544
No 95
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=46.63 E-value=82 Score=33.85 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 288 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 288 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
++|+...+.-|+.+|.+++|.++-.+..+.+..++. |+-..+-...++...|.++++..+.+||....
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~----~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDH----PKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCC----CCCchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 344455667788889999999988887666555532 23334445555666666666666666654443
No 96
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=46.39 E-value=1.5e+02 Score=27.45 Aligned_cols=68 Identities=29% Similarity=0.417 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCC------------CC----------------CCChHHHHHHHhhhc
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT------------LP----------------NISREEFELIFDELD 343 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------------~~----------------~~~~~~~~~~~~~~~ 343 (697)
+++.+||..++.+.+|.++++.....+..+.+..+ .| .-+++..-..+...|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 45778999999999999999987777666654321 00 002223344455566
Q ss_pred ccCCCCCChhhhHHHH
Q 005426 344 DTHDFKINLDEFADLC 359 (697)
Q Consensus 344 ~~~~~~~~~~ef~~~~ 359 (697)
++++|.++.+.+.++.
T Consensus 112 ~~~~G~I~~d~lre~L 127 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELL 127 (171)
T ss_pred ccCCCccCHHHHHHHH
Confidence 6777777777666554
No 97
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=44.74 E-value=1.1e+02 Score=32.93 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=9.5
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
+|.|....+.++.+..++++
T Consensus 243 rrR~~~re~a~~~m~~~V~~ 262 (359)
T PRK05702 243 RIRQLQREMARRRMMAAVPK 262 (359)
T ss_pred HHHHHHHHHHHhHHhhcCCC
Confidence 34444444544444455544
No 98
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=44.51 E-value=89 Score=33.59 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 290 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 290 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
++..+.+-|+.+|.+.+|.++.++.....+.+ ..++++++...+++..|++++..++.+|+.+-
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~ 143 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDH 143 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHHHHhh
Confidence 34456777889999999999988765555554 24578888999999999999999998887543
No 99
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.20 E-value=1.8e+02 Score=31.11 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=10.6
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|.....++..+..++++
T Consensus 243 r~Rq~~re~a~~rm~~~Vp~ 262 (363)
T COG1377 243 RIRQMQREIARRRMMSDVPK 262 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 44455555555555555554
No 100
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=43.99 E-value=1.6e+02 Score=31.46 Aligned_cols=20 Identities=15% Similarity=0.028 Sum_probs=10.2
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|....+.++.+..++++
T Consensus 236 rrR~~~re~a~~~m~~~V~~ 255 (347)
T TIGR00328 236 RIRQMQREAARRRMMQEVPK 255 (347)
T ss_pred HHHHHHHHHHHhhHhhcCCC
Confidence 44444555555555555544
No 101
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=43.31 E-value=1.7e+02 Score=23.26 Aligned_cols=20 Identities=5% Similarity=-0.149 Sum_probs=9.1
Q ss_pred CChhhhHHhhhcCcchhHHH
Q 005426 233 NNPDVWIPAYKASRWYCLFF 252 (697)
Q Consensus 233 ~w~dv~~~~~~~~~~~~i~f 252 (697)
+|-+.+..-....|+..++.
T Consensus 6 ~w~~~~v~~vAkdP~~Fl~~ 25 (74)
T PF15086_consen 6 AWASYIVEWVAKDPYEFLTT 25 (74)
T ss_pred HHHHHHHHHHHcChHHHHHH
Confidence 45554433334555544443
No 102
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=42.18 E-value=50 Score=35.88 Aligned_cols=41 Identities=32% Similarity=0.464 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHH
Q 005426 214 VFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLI 258 (697)
Q Consensus 214 ~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i 258 (697)
.--+++.|++-.+.+.||-|||++ .|....++ +|.++|.++
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i-~P~T~~Gr---~~~i~Yali 152 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNI-APRTDAGR---LFTILYALV 152 (433)
T ss_pred cceecchhHhhhhheeeeccCCcc-cCCcCcch---hHHHHHHHH
Confidence 345899999999999999999999 55444443 444444444
No 103
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.50 E-value=1.9e+02 Score=31.31 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=10.6
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
++.|....+.+..+-.++++
T Consensus 243 r~Rq~~re~a~~~m~~~V~~ 262 (386)
T PRK12468 243 RIRQQQRAMARRRMMVDVPK 262 (386)
T ss_pred HHHHHHHHHHHhhHhhcCCC
Confidence 44455555555555555554
No 104
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=40.17 E-value=1.8e+02 Score=33.69 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 257 LIGVYFVTNLILAVVYDSFKSQLA 280 (697)
Q Consensus 257 ~i~~~~~lnl~iavi~~~f~~~~~ 280 (697)
++.+++++-+.++.+.+.+.+..+
T Consensus 218 i~~gl~~l~l~lp~l~~~~~~~~~ 241 (609)
T PRK12772 218 ILVGLTAFVIALPLFLKVISSAFS 241 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655443
No 105
>PLN02964 phosphatidylserine decarboxylase
Probab=39.72 E-value=95 Score=35.97 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=50.9
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
+++.++..+.+++|.++.++....+..+. ...+.++...++...|.++++.++.+|+.++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 56677888999999999999887776553 2346778899999999999999999999877543
No 106
>PRK09108 type III secretion system protein HrcU; Validated
Probab=39.67 E-value=2.1e+02 Score=30.63 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=9.4
Q ss_pred chhchHHHHHHHHhhccccc
Q 005426 674 TRSQKVDVLLHHMLSAELQK 693 (697)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~ 693 (697)
+|.|....+.++.+-.++++
T Consensus 238 rrRq~~re~a~~~m~~~V~~ 257 (353)
T PRK09108 238 ERKRLARELAFAPPRQRVAR 257 (353)
T ss_pred HHHHHHHHHHHhHHhccCCC
Confidence 34444445544444444544
No 107
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=38.28 E-value=2.3e+02 Score=32.44 Aligned_cols=7 Identities=71% Similarity=1.640 Sum_probs=3.7
Q ss_pred hhhhccc
Q 005426 113 IFWKSTY 119 (697)
Q Consensus 113 ~y~~~~~ 119 (697)
-||++.+
T Consensus 68 ~~~~~~~ 74 (646)
T PRK12773 68 IFWKQYY 74 (646)
T ss_pred eeHHHHH
Confidence 4555554
No 108
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=38.07 E-value=3.7e+02 Score=29.54 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=35.8
Q ss_pred CChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHH
Q 005426 581 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVL 639 (697)
Q Consensus 581 ~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii 639 (697)
.|+.+|++..-....+.|++|+ .++++++-......-+.+-..-.+.+|+|-
T Consensus 286 ~~~~nsmWli~iTFlsiGYGDi-------VP~TycGr~v~l~tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 286 INYLNSMWLIAITFLSIGYGDI-------VPNTYCGRGVALLTGIVGAGCSSLLVAVIA 337 (489)
T ss_pred HHHHhhHHHHHHHHhhcccCcc-------cCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence 3577888876666666666655 344666666666666667778899999974
No 109
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=37.46 E-value=2.4e+02 Score=30.70 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 361 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~ 361 (697)
+..|+..|+.++.+..|.++.++.....+-+..+. ....++.++..+-..+|-++||.++..||.+-...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 56678889999999999999888655444333322 34567888888888999999999999999776543
No 110
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=36.90 E-value=1.3e+02 Score=28.94 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=43.2
Q ss_pred HHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 294 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 294 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
....|++.|++.+|+++-.+.+.+++.+.. |+. ---...+..+.|.+.+++++..||.=+
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga----pQT-HL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGA----PQT-HLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCC----chh-hHHHHHHHHHhhcccccchhHHHHHHH
Confidence 467789999999999999987777776632 221 112345566788888999998887543
No 111
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=36.00 E-value=47 Score=29.09 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhH
Q 005426 290 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 356 (697)
Q Consensus 290 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~ 356 (697)
.+..+.-.|.+||...++.+++.+...+...+ ...+.-....++.-|.++++.|+..|+.
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-------~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-------MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-------STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-------hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 35667777899999999998887743322211 2233445667778888888888887764
No 112
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=35.24 E-value=3.9e+02 Score=25.28 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=13.0
Q ss_pred CcHHHHHHHhccccch
Q 005426 383 HSPFSEKLKAFIRSTK 398 (697)
Q Consensus 383 ~~~~r~~~~~lv~~~~ 398 (697)
..|.|+.+..+|.+.+
T Consensus 60 rGP~Rr~vRD~VDsR~ 75 (170)
T PF11241_consen 60 RGPVRRYVRDYVDSRR 75 (170)
T ss_pred ccchhhhhhhhhhccc
Confidence 3677899999998876
No 113
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=35.16 E-value=1.2e+02 Score=33.65 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHHH
Q 005426 290 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 360 (697)
Q Consensus 290 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~ 360 (697)
+.+.+..+|..++ ++.|+++..+....+.+.+... .....++.+.+..+.+.+.+++++.++|..++-
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4456778888888 8999999998777777665332 345567777788888888999999999987643
No 114
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=33.24 E-value=1.1e+02 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=21.1
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 615 TLAYFVSFYLITVLLLLNLVIAFVLEAFFA 644 (697)
Q Consensus 615 ~~~yFv~~~~~~~~i~lnlfiavii~~F~~ 644 (697)
+..-|.++.++..|+++=+..+-|.+.=..
T Consensus 14 ~K~~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 14 TKIMFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 445566777777887887778888776544
No 115
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=32.54 E-value=1.7e+02 Score=25.22 Aligned_cols=61 Identities=21% Similarity=0.390 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHHH
Q 005426 291 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 359 (697)
Q Consensus 291 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~ 359 (697)
+..-.+.|+.+++ ++|.++-++....+.. -++.......+++-.|.+++|.++.+||.-..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-------S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK-------SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH-------TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-------cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 3345566777775 5788998887665542 24667888999999999999999999996543
No 116
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=31.54 E-value=3.7e+02 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005426 260 VYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNY 304 (697)
Q Consensus 260 ~~~~lnl~iavi~~~f~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 304 (697)
.+.++.++.++++-.+.....+.+.+..+..-+.++.+.+....+
T Consensus 11 vlaIigil~~i~~p~~~~~~~~a~~~~~~~~l~~i~~al~~y~~d 55 (134)
T TIGR01710 11 VLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNALDMYRLD 55 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777766555544444444444555555444433
No 117
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=30.49 E-value=4.4e+02 Score=29.20 Aligned_cols=67 Identities=13% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCHHHHHHHHHHh
Q 005426 254 LYVLIGVYFVTNLILAVVYDSFK------SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEEL 321 (697)
Q Consensus 254 ~~~~i~~~~~lnl~iavi~~~f~------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l 321 (697)
++-++...++++++++++..--. +.+.+....+.+++.+.+.+.+ .+....++..+.++..+..++.
T Consensus 245 i~~~invl~v~slLl~i~~~~~~ii~~~r~~K~~~~~~~~~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~ 317 (445)
T PF13608_consen 245 IFKFINVLLVISLLLQIANTIRNIINEHRQLKRRAAEEKEEKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEV 317 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhc
Confidence 45556666677777777654332 2333333333334445555555 5566666677777766655533
No 118
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=30.22 E-value=2e+02 Score=26.62 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 292 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 292 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
..+..||+..++++.|.+.++...+++..+ ..+.+.++.+.++...-.+..+.++..+|..+
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 456789999999999999999877766554 34677888888888777777777777666544
No 119
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=30.19 E-value=3.2e+02 Score=29.74 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCC-----CC-----------------------------------
Q 005426 290 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL-----PN----------------------------------- 329 (697)
Q Consensus 290 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~----------------------------------- 329 (697)
++..|+++|+..+.++.|.++-.+|.+-++.+....-. |+
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 45678899999999999998888775544443322100 00
Q ss_pred --CChHHHHHHHhhhcccCCCCCChhhhHHHHHHHHhhh
Q 005426 330 --ISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 366 (697)
Q Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~ 366 (697)
..+.....+|..+|+++.|.++.+||.+.++.+....
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 0112334567778888888899999988877655443
No 120
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=28.54 E-value=3e+02 Score=21.82 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=34.1
Q ss_pred cCChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 005426 580 FNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 643 (697)
Q Consensus 580 F~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~ 643 (697)
-.++.+|++-.+...|+-|++|+. ..+.++.+ +..+..+.+..++.++++.+.+-+.
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~------p~t~~gr~-~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIV------PQTPAGRI-FTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSS------TSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCcc------CCccchHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788888777777777766653 11233334 4455556666688888888776554
No 121
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=27.23 E-value=80 Score=28.48 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 005426 628 LLLLNLVIAFVLEAFFAEMELESS 651 (697)
Q Consensus 628 ~i~lnlfiavii~~F~~~~~~~~~ 651 (697)
+.++|.|+|.+.-.|....++.++
T Consensus 66 iyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 66 IYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHhCCCCcccHhhhcc
Confidence 448999999999888877554443
No 122
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=25.82 E-value=20 Score=39.33 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHcCCCChhhhHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 217 SFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 278 (697)
Q Consensus 217 ~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~i~fi~~~~i~~~~~lnl~iavi~~~f~~~ 278 (697)
|+..|++.+.++++|+||+|. +|.+-.+ .+|.++ ++-+.++++-..|.+.
T Consensus 217 ~lf~s~y~v~vtfstvgygd~-~pd~w~s---ql~~vi--------~icval~~ip~q~~~l 266 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDW-YPDYWAS---QLCVVI--------LICVALGLIPKQLDEL 266 (1087)
T ss_pred eeeeeEEEEEEEEeecccccc-ccccchh---hHHHHH--------HHHHHHhccHHHHHHH
Confidence 344566667788899999997 4443222 233222 3445556666666554
No 123
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=25.52 E-value=5.4e+02 Score=28.55 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005426 255 YVLIGVYFVTNLILAVVYDSFK 276 (697)
Q Consensus 255 ~~~i~~~~~lnl~iavi~~~f~ 276 (697)
+++.+++-+..+|...+-+.-.
T Consensus 173 ~i~~~g~Glv~iP~~l~~~~~~ 194 (471)
T PF04791_consen 173 FIILLGYGLVAIPRDLWRSSNS 194 (471)
T ss_pred HHHHHhccHHHHHHHHHHhccc
Confidence 4445666688899888876554
No 124
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.94 E-value=73 Score=29.78 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005426 625 ITVLLLLNLVIAFVLEAFF 643 (697)
Q Consensus 625 ~~~~i~lnlfiavii~~F~ 643 (697)
+|.+ .||+++|.+--.+.
T Consensus 70 LgIY-lLNlfiaFLtPk~D 87 (188)
T KOG1688|consen 70 LGIY-LLNLFIAFLTPKVD 87 (188)
T ss_pred HHHH-HHHHHHHHhCCCCC
Confidence 4444 89999999876643
No 125
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=24.81 E-value=2.7e+02 Score=26.02 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhccccCccCHHHHHHHHHHhhhcCCCCCCChHHHHHHHhhhcccCCCCCChhhhHHH
Q 005426 290 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 358 (697)
Q Consensus 290 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~~~ 358 (697)
.++.+..+|...+.++.++++-++..-.++.+. -...+.+...+..+.++++.+.++.++|...
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~ 94 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRV 94 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHH
Confidence 346678889999999999999887544444432 2335667777888889999999998888765
No 126
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=23.88 E-value=4.4e+02 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.466 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005426 251 FFVLYVLIGVYFVTNLILAVVYDSFKS 277 (697)
Q Consensus 251 ~fi~~~~i~~~~~lnl~iavi~~~f~~ 277 (697)
.|..+..+..|+++=+..+-|.+.-..
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344555555566666666666655443
No 127
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=21.97 E-value=2.8e+02 Score=29.47 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=40.7
Q ss_pred cCcCChhhhHHHHHHHhhhcCHHHHHHHHHhhhCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005426 578 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 647 (697)
Q Consensus 578 ~nF~~~~~s~~tlf~i~t~~~W~~im~~~~~~~~~~~~~~yFv~~~~~~~~i~lnlfiavii~~F~~~~~ 647 (697)
.+.++|..|++--.+..|+=|++.. ...+.-....+.+++=.+.+.++..+.+|++.-.|++-..
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ecccchhhheeEEEEEEEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4778999999888888877665542 0111122344555666777777888888888888886543
No 128
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=3.5e+02 Score=26.18 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=10.9
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHH
Q 005426 615 TLAYFVSFYLITVLLLLNLVIAFV 638 (697)
Q Consensus 615 ~~~yFv~~~~~~~~i~lnlfiavi 638 (697)
+...+..-+++.+. +..+++.++
T Consensus 42 ~~~~p~lvilV~av-i~gl~~~i~ 64 (201)
T COG1422 42 SPLPPHLVILVAAV-ITGLYITIL 64 (201)
T ss_pred cccccHHHHHHHHH-HHHHHHHHH
Confidence 33455544444444 445555543
No 129
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=20.55 E-value=5.6e+02 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005426 529 IPSLMPYLGTIFCVQCIYCSLGVQIFGGI 557 (697)
Q Consensus 529 ~~~l~~~~~l~~~~~~ifAi~G~~lF~~~ 557 (697)
-++.-+++++.+....+-...|-.+|+..
T Consensus 154 ~~S~~~l~~i~~~~~~~~i~~gaa~fs~~ 182 (350)
T KOG4404|consen 154 DVSVYNLVLILFTACILLICCGAAMFSSV 182 (350)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 34555555555555544555566667654
Done!