Query 005428
Match_columns 697
No_of_seqs 176 out of 1009
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 23:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 4.7E-93 1E-97 842.3 59.7 554 124-696 27-632 (900)
2 KOG1041 Translation initiation 100.0 8.9E-78 1.9E-82 706.0 51.6 539 127-686 42-589 (876)
3 KOG1042 Germ-line stem cell di 100.0 1.9E-74 4.2E-79 618.6 42.5 498 135-696 87-609 (845)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 5.1E-33 1.1E-37 310.9 21.5 219 465-696 3-232 (448)
5 cd04657 Piwi_ago-like Piwi_ago 100.0 2.5E-31 5.5E-36 294.7 16.3 189 496-696 1-202 (426)
6 cd02826 Piwi-like Piwi-like: P 99.9 6.2E-26 1.4E-30 249.4 16.3 164 508-696 1-175 (393)
7 PF02170 PAZ: PAZ domain; Int 99.9 7.5E-24 1.6E-28 198.5 10.9 133 338-475 1-135 (135)
8 cd02846 PAZ_argonaute_like PAZ 99.9 7.3E-21 1.6E-25 173.0 13.7 114 337-451 1-114 (114)
9 cd02825 PAZ PAZ domain, named 99.8 1.3E-20 2.8E-25 171.3 12.1 111 337-450 1-114 (115)
10 cd02845 PAZ_piwi_like PAZ doma 99.8 1.2E-18 2.6E-23 158.1 9.9 104 338-450 2-113 (117)
11 PF08699 DUF1785: Domain of un 99.5 1.8E-14 3.8E-19 110.8 3.6 51 286-337 2-52 (52)
12 cd02844 PAZ_CAF_like PAZ domai 99.5 4.8E-14 1E-18 130.8 6.9 83 365-451 27-132 (135)
13 PF02171 Piwi: Piwi domain; I 99.2 8.1E-12 1.7E-16 133.1 4.6 71 626-696 1-80 (302)
14 cd04659 Piwi_piwi-like_ProArk 99.1 5.2E-11 1.1E-15 132.0 7.3 88 603-696 95-193 (404)
15 cd02843 PAZ_dicer_like PAZ dom 98.7 2.4E-08 5.2E-13 89.6 5.8 68 366-436 38-106 (122)
16 COG1431 Argonaute homolog, imp 87.8 1.2 2.7E-05 50.1 6.8 161 517-693 307-472 (685)
17 PF05918 API5: Apoptosis inhib 37.4 11 0.00024 43.4 0.0 10 61-70 533-542 (556)
18 KOG3915 Transcription regulato 24.7 3E+02 0.0065 30.8 8.0 10 245-254 256-265 (641)
19 KOG4037 Photoreceptor synaptic 22.9 2.1E+02 0.0046 27.8 5.8 12 143-154 77-88 (240)
20 PF15462 Barttin: Bartter synd 22.0 3.7E+02 0.0079 26.5 7.2 22 96-117 176-197 (224)
21 KOG3123 Diphthine synthase [Tr 20.5 1.6E+02 0.0035 29.5 4.7 100 546-661 68-167 (272)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=4.7e-93 Score=842.32 Aligned_cols=554 Identities=32% Similarity=0.558 Sum_probs=463.7
Q ss_pred CCCcccCCCCCCCCCCCCEEEEEEEEEEeEc--CCCCceEeEEEEec----CCCChHHHHHHHHHHHHHhccCccCCCcc
Q 005428 124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITP----EVASRTVNRAIMAELVRLYKESDLGMRLP 197 (697)
Q Consensus 124 ~~~~~~~~~RP~~Gt~G~~v~l~tN~F~i~~--~~~~iy~Y~V~i~p----~v~~k~~~r~ii~~l~~~~~~~~~~~~~~ 197 (697)
+++...+++||+||+.|++|.|+||||+|.+ ++..||||+|+|.| ++.++++++.|++++++.+.. .+.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence 4444577999999999999999999999997 47789999999996 455678889999999887643 3544568
Q ss_pred eecCCceEEecCCCCCCceeEEEEeccCCC------------CCC---------CCCCCcEEEEEEEEeeeechhhHHHH
Q 005428 198 AYDGRKSLYTAGELPFVWKEFKIKLVDELD------------GIN---------GPKRVREYKVVIKFAARANMHHLGQF 256 (697)
Q Consensus 198 ~yDG~~~LyS~~~L~~~~~~~~v~l~~~~~------------~~~---------~~~~~~~~~V~Ik~~~~i~l~~L~~~ 256 (697)
+|||+++|||+.+|+.+..++.|++.+++. ..+ ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 999999999999999866677887764210 000 01246789999999999999999999
Q ss_pred HcCCCCCChhHHHHHHHHHHhccccCc-cccCCccccCCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeeccccccc
Q 005428 257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI 335 (697)
Q Consensus 257 l~~~~~~~~~~~~q~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~ 335 (697)
+.+.....+.+++|+||+|||+.++.. +..+||+||.+......+++.|+|+|+||++|||+++++++||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999988888999999999999998654 8899999998654434578999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCC--------C
Q 005428 336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S 407 (697)
Q Consensus 336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~--------g 407 (697)
++++|+|+|.++.+..+ ....++.++.++|+|++|.++|++ ++|+|.||++.++++.+|+++++ +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998865321 122356679999999999999973 57999999999999999986421 3
Q ss_pred ceeeHHHHHHHHhCCcccCC-CCcEEEeccCCcceeecccceEecCCccccccCCHHHHHHHHHHhcCCchhHHHHHHHH
Q 005428 408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT 486 (697)
Q Consensus 408 ~~iSV~dYF~~~Y~i~L~~p-~lPlv~~g~~~~~~ylP~Elc~i~~gQr~~~~L~~~q~~~mik~a~~~P~eR~~~I~~~ 486 (697)
+.|||+|||+++|||+|+|| ++|||++|+..+++|||||||.|++||+++.+|++.|+++||++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 47899999999999999996 99999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcchHHhhcCceecCcceEeeeeecCCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEEeCCCcC
Q 005428 487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ 566 (697)
Q Consensus 487 ~~~~~~~~~~~L~~fGi~I~~~~~~V~arvL~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~~~~~~~ 566 (697)
++.++++.+++|++|||+|+++|++|+||||++|+|.|+++. .+.|.+|+||+++.+|+.++.+++|++|++.+.
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 988888888999999999999999999999999999998753 245779999999999999999999999988753
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCCCCcccccCCC--chHHHHHHHHHHHHHhhccCCCCceEEEEEeCCC-CchhhHHHH
Q 005428 567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNAR--PDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLYGDLK 643 (697)
Q Consensus 567 ~~~~~~F~~~L~~~~~~~Gm~i~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~-~~~~Y~~IK 643 (697)
..+++|++.|.+.|+.+||.+..|..+.....+ ....+..++.+++++.++. ...++|+|||||++ +.++|+.||
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~qlv~vIlp~~~~~~~Y~~IK 571 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL-PGPPQFLLCILPERKNSDIYGPWK 571 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc-cCCCeEEEEEEcCCCCcchHHHHH
Confidence 358999999999999999999875433111110 0111233444444433222 24689999999974 678999999
Q ss_pred HHhhhccCceeeeeeccccccCChHHHHHHHHHHhccCCCccccccc------------CCcccc
Q 005428 644 RICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVE------------LNTILC 696 (697)
Q Consensus 644 ~~~d~~~GV~TQcv~~~t~~K~~~q~~~NI~lKIN~KLGG~~n~~l~------------~~tmi~ 696 (697)
++||+++||+||||... +.++||++|||||||+||||+|| .++ .+||||
T Consensus 572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~-~~~~~~~~~i~~~~~~~tMiv 632 (900)
T PLN03202 572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNS-LLAIEHSPSIPLVSKVPTIIL 632 (900)
T ss_pred HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcce-eecccccccCccccCCCeEEE
Confidence 99999999999999653 34689999999999999999974 332 489986
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-78 Score=706.04 Aligned_cols=539 Identities=37% Similarity=0.578 Sum_probs=454.7
Q ss_pred cccCCCCCCCCCCCCEEEEEEEEEEeEc--CCCC-ceEeEEEEecCCCChHHHH-HHHHHHHHHhccCccCCCcceecCC
Q 005428 127 SLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKD-LNQYDVTITPEVASRTVNR-AIMAELVRLYKESDLGMRLPAYDGR 202 (697)
Q Consensus 127 ~~~~~~RP~~Gt~G~~v~l~tN~F~i~~--~~~~-iy~Y~V~i~p~v~~k~~~r-~ii~~l~~~~~~~~~~~~~~~yDG~ 202 (697)
....+.||+.|+.|+++.|.+|||.+.+ ++.. +++|+|++.++..++.+.+ .+++.+........|+...++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 4566789999999999999999999876 5555 9999999999988887775 5666555554333355566779999
Q ss_pred ceEEecCCCCCCce--eEEEEeccCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHHcCCCCCChhHHHHHHHHHHhccc
Q 005428 203 KSLYTAGELPFVWK--EFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS 280 (697)
Q Consensus 203 ~~LyS~~~L~~~~~--~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~~~~~~~~~~~~q~Lniilr~~~ 280 (697)
++|||..+++.... +|.+..+.+ ...|++.|+++..+.+..+..++.+.....+.+++|+|++++++.+
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ 192 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKE---------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIA 192 (876)
T ss_pred ceeEeccccccccceEEEEecCCCC---------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhh
Confidence 99999877774222 333333221 1119999999998888888888888777789999999999999999
Q ss_pred cCc-cccCCccccCCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeecccccccccccHHHHHHHHhCCCccCCCCCh
Q 005428 281 TKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSD 359 (697)
Q Consensus 281 ~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~~~~r~l~~ 359 (697)
+.+ +...|++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|.++++++++..+ +.+..
T Consensus 193 s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~ 270 (876)
T KOG1041|consen 193 TSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHK 270 (876)
T ss_pred chhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--ccccc
Confidence 776 999999999863333345899999999999999999999999999999999999999999999987542 22332
Q ss_pred hHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCC-CceeeHHHHHHHHhCCcccCCCCcEEEeccCC
Q 005428 360 SDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN-STMKSVVEYFQEMYGFTIQHTHLPCLQVGNQK 438 (697)
Q Consensus 360 ~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~-g~~iSV~dYF~~~Y~i~L~~p~lPlv~~g~~~ 438 (697)
.....+++.|+||+|.++|+ +..|.|+|.+++..++.+.+|++++. +.++||+|||+++||++|+||+||||++|..+
T Consensus 271 ~~~~~~~~~lkgL~v~~~h~-~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~ 349 (876)
T KOG1041|consen 271 DRPLDIKKALKGLKVYVTHG-KRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPK 349 (876)
T ss_pred ccchhHHHHhhCcEEEEecc-cCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCC
Confidence 22234899999999999994 55788999999999999999997664 57889999999999999999999999999999
Q ss_pred cceeecccceEecCCccccc-cCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhcCCcchHHhhcCceecCcceEeeeeec
Q 005428 439 KANYLPMEACKIVEGQRYTK-RLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARIL 517 (697)
Q Consensus 439 ~~~ylP~Elc~i~~gQr~~~-~L~~~q~~~mik~a~~~P~eR~~~I~~~~~~~~~~~~~~L~~fGi~I~~~~~~V~arvL 517 (697)
+.+|||||||.|+||||+.+ +|++.|+++|++.+++.|++|.+.|.++++...+..|++|++|||.|.++|+.|+||+|
T Consensus 350 ~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL 429 (876)
T KOG1041|consen 350 RENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVL 429 (876)
T ss_pred CCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEeccccccccccc
Confidence 99999999999999999988 89999999999999999999999999999988888899999999999999999999999
Q ss_pred CCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEEeCCCcCHHHHHHHHHHHHHHHHhcCCccCCCCccccc
Q 005428 518 PAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597 (697)
Q Consensus 518 ~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~~~~~~~ 597 (697)
|+|.|.|+++ .....|..|.|++++++|+.|+.+..|+|++|....+.+. +.|+++|.+.|+..||.|.. +. .+
T Consensus 430 ~~P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~ 503 (876)
T KOG1041|consen 430 PPPKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KW 503 (876)
T ss_pred CCceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--cc
Confidence 9999999986 2245677999999999999999999999999998755555 89999999999999999976 55 22
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccCChHHHHHHHHHH
Q 005428 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKI 677 (697)
Q Consensus 598 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~~~q~~~NI~lKI 677 (697)
......++..+...-... ++ +.+++|++||++++..++|+.||+++|...||+||||+.+++.|..+||++||+|||
T Consensus 504 ~~~~~~~~~~~~~~~~~~--~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKi 580 (876)
T KOG1041|consen 504 APTEESLEDMITEKSSME--KA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKI 580 (876)
T ss_pred CcccchhHHHHHHHHhhh--cc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHH
Confidence 222223333332221111 11 367999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccc
Q 005428 678 NVKVCLSFN 686 (697)
Q Consensus 678 N~KLGG~~n 686 (697)
|+||||+|+
T Consensus 581 N~KlGG~N~ 589 (876)
T KOG1041|consen 581 NVKLGGLNY 589 (876)
T ss_pred hhccCceee
Confidence 999999964
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-74 Score=618.58 Aligned_cols=498 Identities=22% Similarity=0.374 Sum_probs=429.6
Q ss_pred CCCCCCCEEEEEEEEEEeEc-CCCCceEeEEEEecCCCChHHHHHHHHHHHHHhccCccCCCcceecCCceEEecCCCCC
Q 005428 135 GYGQVGTKCIVKANHFFAEL-PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPF 213 (697)
Q Consensus 135 ~~Gt~G~~v~l~tN~F~i~~-~~~~iy~Y~V~i~p~v~~k~~~r~ii~~l~~~~~~~~~~~~~~~yDG~~~LyS~~~L~~ 213 (697)
..|+.|.+++|.||||++.. |+..||||+|+|.|.++++.++++++... . +.+| ..++|||. .||..++++.
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~~h----~-~lig-~~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLYNH----T-DLIG-KGYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHHHh----H-hhhc-cceeecce-eehhhHHHhh
Confidence 57999999999999999988 89999999999999999999998877533 2 2444 56899997 9999999976
Q ss_pred CceeEEEEeccCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHHcCCCCCChhHHHHHHHHHHhccc-cCccccCCcccc
Q 005428 214 VWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS-TKRYCPIGRSFF 292 (697)
Q Consensus 214 ~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~~~~~~~~~~~~q~Lniilr~~~-~~~~~~~Gr~ff 292 (697)
+..+. + ..+..+..++|+|++++++.. .+.+.+|++|+|+|..+ .+++.++||+||
T Consensus 160 ~~tel-~---------~ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTEL-V---------SKSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhee-e---------cccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 53221 1 123667789999999998863 56789999999999988 679999999999
Q ss_pred CCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeecccccccccccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCc
Q 005428 293 SPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGV 372 (697)
Q Consensus 293 ~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~Lkgl 372 (697)
++.+.. ....+.+++|+||.+|||..+..++|+.|++|++ .++.+|+|+|...... ++...+++++.+-|+
T Consensus 217 np~~~i-~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~gl 287 (845)
T KOG1042|consen 217 DPRAKI-EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-------TQRFQETVNKNVIGL 287 (845)
T ss_pred CCCccc-ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcce
Confidence 997653 2335789999999999999999999999999998 8999999999988753 345678899999999
Q ss_pred EEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHHHHHhCCcccCCCCcEEEeccC--------Ccceeec
Q 005428 373 KVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ--------KKANYLP 444 (697)
Q Consensus 373 kV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF~~~Y~i~L~~p~lPlv~~g~~--------~~~~ylP 444 (697)
.|.+.|+ +++|+|++|+|+.++.++|..+| | +||+.|||+++|||.|++-+||+|++..+ .+..++.
T Consensus 288 ivLT~YN---NktyriddvD~~~tP~stF~k~d-g-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lI 362 (845)
T KOG1042|consen 288 IVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD-G-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLI 362 (845)
T ss_pred EEEEecC---CceeeeeccccCcCccceeeecC-c-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeee
Confidence 9999996 46899999999999999999654 5 78999999999999999999999998543 3467999
Q ss_pred ccceEecCCccccccCCHHHHH------HHHHHhcCCchhHHHHHHHHHHhhcCCc--chHHhhcCceecCcceEeeeee
Q 005428 445 MEACKIVEGQRYTKRLNERQIT------ALLKVTCQRPRDRENDILQTVQQNAYDQ--DLYAKEFGIKISEKLASVEARI 516 (697)
Q Consensus 445 ~Elc~i~~gQr~~~~L~~~q~~------~mik~a~~~P~eR~~~I~~~~~~~~~~~--~~~L~~fGi~I~~~~~~V~arv 516 (697)
||||++ ++|+|++++ +|.++|...|++|..++..++..+..+. -.-|+.|||+++.+.++|+||+
T Consensus 363 PELc~~-------TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRi 435 (845)
T KOG1042|consen 363 PELCFL-------TGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRI 435 (845)
T ss_pred hhhhhc-------cCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhcccee
Confidence 999999 799999987 5888999999999999999987765433 3468999999999999999999
Q ss_pred cCCCeeeeccCCCccccCCcccccc--cCCceecCCcccceeEEEEeCCCcCHHHHHHHHHHHHHHHHhcCCccCCCCcc
Q 005428 517 LPAPWLKYHENGKEKDCLPQVGQWN--MMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVI 594 (697)
Q Consensus 517 L~~P~I~y~~~~~~~~v~p~~g~Wn--l~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~~~~ 594 (697)
|++..|.+++. + ....+..++|. ++..+++.+..+++|++++..+ ....++.|++.|.+.+..+||++..|.++
T Consensus 436 l~sEkI~~~~~-~-~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v 511 (845)
T KOG1042|consen 436 LPSEKILFGNQ-K-VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICV 511 (845)
T ss_pred cCccceecCCc-c-cCCCcchhhhhhhcccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEE
Confidence 99999999985 1 22334568995 7888899999999999999988 56789999999999999999999998888
Q ss_pred cccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccCC--hHHHHH
Q 005428 595 PIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKIS--KQYLAN 672 (697)
Q Consensus 595 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~~--~q~~~N 672 (697)
.+.+.+++.|-++++++. +..+++|+||+|+.+.+.|+.||++++++..||||||+.+|+.+.. .+++.+
T Consensus 512 ~i~ddr~~tYvraiqq~v--------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtK 583 (845)
T KOG1042|consen 512 EIKDDRPGTYVRAIQQVV--------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATK 583 (845)
T ss_pred EeCCCChHHHHHHHHHhc--------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHH
Confidence 888888999998888765 3579999999999999999999999999999999999999997654 568899
Q ss_pred HHHHHhccCCCccccccc---CCcccc
Q 005428 673 VSLKINVKVCLSFNSSVE---LNTILC 696 (697)
Q Consensus 673 I~lKIN~KLGG~~n~~l~---~~tmi~ 696 (697)
|+|||||||||.+| .|+ +.+|++
T Consensus 584 I~lQmnCKlGg~lW-~V~IPLk~lMiV 609 (845)
T KOG1042|consen 584 IALQMNCKLGGELW-KVEIPLKGLMIV 609 (845)
T ss_pred HHHHHhhhhcCcce-EEeeecccceEE
Confidence 99999999999999 566 377775
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.1e-33 Score=310.89 Aligned_cols=219 Identities=22% Similarity=0.366 Sum_probs=186.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhhcCCcc--hHHhhcCceecCcceEeeeeecCCCeeeeccCCCccccCCccccccc
Q 005428 465 ITALLKVTCQRPRDRENDILQTVQQNAYDQD--LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNM 542 (697)
Q Consensus 465 ~~~mik~a~~~P~eR~~~I~~~~~~~~~~~~--~~L~~fGi~I~~~~~~V~arvL~~P~I~y~~~~~~~~v~p~~g~Wnl 542 (697)
+++|+++++.+|.+|++.|.++++.+..+.+ ++|++|||+|+++|++|+||+|+||.|.|+++. ...+..|+|++
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~~ 79 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWKR 79 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcch
Confidence 5789999999999999999999998876665 589999999999999999999999999999752 22346788875
Q ss_pred --CCceecCCcccceeEEEEeCCCcCHHHHHHHHHHHHHHHHhcCCccCCCCcccccCCCchHHHHHHHHHHHHHhhccC
Q 005428 543 --MNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTK 620 (697)
Q Consensus 543 --~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 620 (697)
.+..|+.+..+++|++|++.. +.+.+++|++.|.+.++++||.+..|..+.+.+.+.+++...|++.+.
T Consensus 80 ~~~~~~~~~~~~~~~W~vi~~~~--~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------- 150 (448)
T cd04658 80 EIRNQPLYDAVNLNNWVLIYPSR--DQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------- 150 (448)
T ss_pred hhcCCcccCCcccCeEEEEEecC--CHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc-------
Confidence 466789999999999999874 678899999999999999999998866666655555666666665543
Q ss_pred CCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccC--ChHHHHHHHHHHhccCCCcccccc-----cCCc
Q 005428 621 GKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKVCLSFNSSV-----ELNT 693 (697)
Q Consensus 621 ~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~--~~q~~~NI~lKIN~KLGG~~n~~l-----~~~t 693 (697)
..++|+|||+|++..++|+.||++|+.+.||+||||..+++.+. ..+++.||+||||+||||+||... ..+|
T Consensus 151 -~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~~~~~~~t 229 (448)
T cd04658 151 -SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPPFILKNT 229 (448)
T ss_pred -CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccCCCCCCCe
Confidence 46899999999988889999999999999999999999998764 568999999999999999999543 2588
Q ss_pred ccc
Q 005428 694 ILC 696 (697)
Q Consensus 694 mi~ 696 (697)
|||
T Consensus 230 mii 232 (448)
T cd04658 230 MIV 232 (448)
T ss_pred EEE
Confidence 886
No 5
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=99.97 E-value=2.5e-31 Score=294.66 Aligned_cols=189 Identities=34% Similarity=0.624 Sum_probs=152.7
Q ss_pred hHHhhcCceecCcceEeeeeecCCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEEeCCCcCH----HHHH
Q 005428 496 LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQE----SVAR 571 (697)
Q Consensus 496 ~~L~~fGi~I~~~~~~V~arvL~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~----~~~~ 571 (697)
++|++|||+|+++|++|+||+|++|.|.|+++.. ...+.+|+||+++.+|+.++.+++|++|++.+..+. ..++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~--~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK--TVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc--ccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 4689999999999999999999999999996432 345678999999999999999999999999864222 4799
Q ss_pred HHHHHHHHHHHhcCCccCCCCcccccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccC
Q 005428 572 GFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLG 651 (697)
Q Consensus 572 ~F~~~L~~~~~~~Gm~i~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~G 651 (697)
+|++.|.+.|+.+||.+. .... ...+. +..+++.+.+. ....++|||||||+++.++|+.||++||.+.|
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~~----~~~~~~~~~~~-~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEGR----VEELFAKLKQA-KGEGPQLVLVILPKKDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccchh----HHHHHHHHHhh-ccCCCCEEEEEEcCCCcchHHHHHHHHhhcCC
Confidence 999999999999999987 2111 11122 22333222211 12368999999999888899999999999999
Q ss_pred ceeeeeecccccc-CChHHHHHHHHHHhccCCCcccccc--------cCCcccc
Q 005428 652 IISQCCLTKHVFK-ISKQYLANVSLKINVKVCLSFNSSV--------ELNTILC 696 (697)
Q Consensus 652 V~TQcv~~~t~~K-~~~q~~~NI~lKIN~KLGG~~n~~l--------~~~tmi~ 696 (697)
|+||||..+++.| .+.||+.||+||||+||||+||... ..+||||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmii 202 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDIRPLLTKEPTMVL 202 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccccccccCCCCEEEE
Confidence 9999999999976 6799999999999999999988542 2478886
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.93 E-value=6.2e-26 Score=249.43 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=133.6
Q ss_pred cceEeeeeecCCCeeeeccCCCccccCCcccccccCCceecCCccc-ceeEEEEeCCCcCHHHHHHHHHHHHHHHHhcCC
Q 005428 508 KLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTV-SRWACINFSRSVQESVARGFCNELAQMCQVSGM 586 (697)
Q Consensus 508 ~~~~V~arvL~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i-~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm 586 (697)
.+++|+||+||+|.|.|+++ |++++++|..++.+ +.|++|++.+ ...++|++.|.+.|+++||
T Consensus 1 ~~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~ 64 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGM 64 (393)
T ss_pred CceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999751 99999999999988 9999999875 3356999999999999999
Q ss_pred ccCC-CCcccccCC--CchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccc
Q 005428 587 EFNP-EPVIPIHNA--RPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVF 663 (697)
Q Consensus 587 ~i~~-~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~ 663 (697)
.+.+ ++...+... +.+++++.|+++.+ .+++|+|||+|+++.++|+.||++|+.+ ||+||||+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~ 135 (393)
T cd02826 65 KIKEIPIVSWIEDLNNSFKDLKSVFKNAIK--------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAK 135 (393)
T ss_pred ccCCCCCcceeecccccHHHHHHHHHHHhh--------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhc
Confidence 9987 444333222 23344444443332 4799999999998889999999999988 9999999999997
Q ss_pred c--CChHHHHHHHHHHhccCCCcccccc-----cCCcccc
Q 005428 664 K--ISKQYLANVSLKINVKVCLSFNSSV-----ELNTILC 696 (697)
Q Consensus 664 K--~~~q~~~NI~lKIN~KLGG~~n~~l-----~~~tmi~ 696 (697)
+ ..++|++||+||||+||||+||... ..+||||
T Consensus 136 ~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~~~~~~~tmii 175 (393)
T cd02826 136 KMRRLKQTLDNLLRKVNSKLGGINYILDSPVKLFKSDIFI 175 (393)
T ss_pred cccccHHHHHHHHHHHhhhhCCeeeEeccCCCCCCCEEEE
Confidence 6 6789999999999999999998532 2368886
No 7
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.90 E-value=7.5e-24 Score=198.47 Aligned_cols=133 Identities=32% Similarity=0.582 Sum_probs=109.2
Q ss_pred ccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHHH
Q 005428 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (697)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF~ 417 (697)
++|+|++.++.+.... .....++++.+.|+|++|.++|+++ .+.|+|.+|+++.+++.+|+.+ +|..+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999999875421 1122344599999999999999865 4789999999999999999964 478889999999
Q ss_pred HHhCCcccCCCCcEEEeccCCc--ceeecccceEecCCccccccCCHHHHHHHHHHhcCC
Q 005428 418 EMYGFTIQHTHLPCLQVGNQKK--ANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475 (697)
Q Consensus 418 ~~Y~i~L~~p~lPlv~~g~~~~--~~ylP~Elc~i~~gQr~~~~L~~~q~~~mik~a~~~ 475 (697)
++||++|+||+||||+++...+ .+|||||||.|+++|++..++.+.+++.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998776 999999999999999999999999999999999864
No 8
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.85 E-value=7.3e-21 Score=172.97 Aligned_cols=114 Identities=51% Similarity=0.896 Sum_probs=98.2
Q ss_pred cccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHH
Q 005428 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (697)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF 416 (697)
.++|+|+++++++.... ..+++.++.++.++|+|++|.++|.++..|.|+|.+|++.++.+.+|+.+++++.+||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf 79 (114)
T cd02846 1 AQPVIEFLKEFLGFDTP-LGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYF 79 (114)
T ss_pred CccHHHHHHHHhCcccc-cccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHH
Confidence 36899999999876432 24566788899999999999999975446789999999999889999865433578999999
Q ss_pred HHHhCCcccCCCCcEEEeccCCcceeecccceEec
Q 005428 417 QEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIV 451 (697)
Q Consensus 417 ~~~Y~i~L~~p~lPlv~~g~~~~~~ylP~Elc~i~ 451 (697)
+++||++|+||+||||++|+..+++|+|||||.|+
T Consensus 80 ~~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 80 KEKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999998888999999999984
No 9
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.84 E-value=1.3e-20 Score=171.31 Aligned_cols=111 Identities=31% Similarity=0.429 Sum_probs=97.2
Q ss_pred cccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHH
Q 005428 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (697)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF 416 (697)
.++|+|+++++++.++..+.+.+.++.++.++|+|++|.++|++. ++.|+|.+|++.++++. |+. .+|+.+||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~-~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPL-NRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCC-ceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 368999999999865555667778889999999999999999753 57899999999999887 763 346788999999
Q ss_pred HHHhCCcccCCCCcEEEeccC---CcceeecccceEe
Q 005428 417 QEMYGFTIQHTHLPCLQVGNQ---KKANYLPMEACKI 450 (697)
Q Consensus 417 ~~~Y~i~L~~p~lPlv~~g~~---~~~~ylP~Elc~i 450 (697)
+++||++|+||+||||++|.. .+.+|||||||.|
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i 114 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVI 114 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEe
Confidence 999999999999999999987 7789999999997
No 10
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.77 E-value=1.2e-18 Score=158.10 Aligned_cols=104 Identities=23% Similarity=0.354 Sum_probs=88.4
Q ss_pred ccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHHH
Q 005428 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (697)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF~ 417 (697)
.+++|++.+++.... ....++++.+.|+|+.|.++|+ ++.|+|.+|++++++.++|+.+ ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478899998876431 1246789999999999999995 4689999999999999999854 345679999999
Q ss_pred HHhCCcccCCCCcEEEeccC--------CcceeecccceEe
Q 005428 418 EMYGFTIQHTHLPCLQVGNQ--------KKANYLPMEACKI 450 (697)
Q Consensus 418 ~~Y~i~L~~p~lPlv~~g~~--------~~~~ylP~Elc~i 450 (697)
++||+.|+||+||||+++.+ .+.+|||||||.+
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~l 113 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFL 113 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhh
Confidence 99999999999999999863 3489999999999
No 11
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.48 E-value=1.8e-14 Score=110.83 Aligned_cols=51 Identities=57% Similarity=1.027 Sum_probs=41.7
Q ss_pred cCCccccCCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeeccccccccc
Q 005428 286 PIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEP 337 (697)
Q Consensus 286 ~~Gr~ff~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~~~ 337 (697)
.+||+||+++... .++++|+|+|+|||+||||+.++|+||||+++++||++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987653 68999999999999999999999999999999999975
No 12
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.48 E-value=4.8e-14 Score=130.78 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=70.0
Q ss_pred HHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCCCceeeHHHHHHHHhCCcccCCCCcEEEecc--------
Q 005428 365 IKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN-------- 436 (697)
Q Consensus 365 i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF~~~Y~i~L~~p~lPlv~~g~-------- 436 (697)
..+.|+|+.|.++|+ ++.|+|.+|+ +.+++++|+.+++++.+||+|||+++|||.|+||+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999995 5689999999 9999999986654366899999999999999999999999741
Q ss_pred ---------------CCcceeecccceEec
Q 005428 437 ---------------QKKANYLPMEACKIV 451 (697)
Q Consensus 437 ---------------~~~~~ylP~Elc~i~ 451 (697)
....++||||||.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred ccccccccccccccccceEEEeChHHhccc
Confidence 012468999999884
No 13
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.21 E-value=8.1e-12 Score=133.12 Aligned_cols=71 Identities=39% Similarity=0.545 Sum_probs=60.4
Q ss_pred EEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccC--ChHHHHHHHHHHhccCCCccccccc-------CCcccc
Q 005428 626 LLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKVCLSFNSSVE-------LNTILC 696 (697)
Q Consensus 626 lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~--~~q~~~NI~lKIN~KLGG~~n~~l~-------~~tmi~ 696 (697)
++|||+|+++.+.|..||++++.++||+|||+..+++.+. ..+++.||+||||+||||+|+-.++ .+||||
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~~~~~~~~~miI 80 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSPPSIDLKNTMII 80 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCSSGSSESEEEEE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccccccccCceEEE
Confidence 5889999988899999999999999999999999999877 4689999999999999999422333 366765
No 14
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.14 E-value=5.2e-11 Score=132.00 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEeCCCC------chhhHHHHHHhhhccCceeeeeeccccccC--ChHHHHHHH
Q 005428 603 QVEKALKHVYHSSMSKTKGKELELLLAILPDNN------GSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVS 674 (697)
Q Consensus 603 ~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~------~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~--~~q~~~NI~ 674 (697)
.+..+++.+.++. ...++++||++|++. .++|+.||+++ .+.||+||||..+|+.+. ..+++.||+
T Consensus 95 ~~~~a~~~~~~~~-----~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nia 168 (404)
T cd04659 95 AIIEAVDLALSES-----SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLA 168 (404)
T ss_pred HHHHHHHHHHHhh-----cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHH
Confidence 3444454444332 246899999999975 78999999997 689999999999999754 567999999
Q ss_pred HHHhccCCCcccccc---cCCcccc
Q 005428 675 LKINVKVCLSFNSSV---ELNTILC 696 (697)
Q Consensus 675 lKIN~KLGG~~n~~l---~~~tmi~ 696 (697)
+|||+|+||+||... ..+||+|
T Consensus 169 l~i~aKlGG~pW~l~~~~~~~~~iI 193 (404)
T cd04659 169 LALYAKLGGIPWKLDADSDPADLYI 193 (404)
T ss_pred HHHHHhcCCCceEcccCCCCCeEEE
Confidence 999999999999542 4478886
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.69 E-value=2.4e-08 Score=89.63 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHhcCcEEEEeecCCcc-ceEEEecccCCCCcceEEeecCCCceeeHHHHHHHHhCCcccCCCCcEEEecc
Q 005428 366 KKALRGVKVEVTHRGTVR-RKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN 436 (697)
Q Consensus 366 ~~~LkglkV~~~~~~~~~-r~~rI~~i~~~~a~~~~F~~~d~g~~iSV~dYF~~~Y~i~L~~p~lPlv~~g~ 436 (697)
.+.+.|..|.+.|++.+. ++|+|.+|.++.++.++|+.+ + .+|++|||+++|||.|++++||||.+..
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 366899999999975322 679999999999999999843 3 5799999999999999999999999964
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=87.77 E-value=1.2 Score=50.12 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=92.4
Q ss_pred cCCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEE---eCCCcCHHHHHHHHHHHHHHHHhcC-CccCC-C
Q 005428 517 LPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACIN---FSRSVQESVARGFCNELAQMCQVSG-MEFNP-E 591 (697)
Q Consensus 517 L~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~---~~~~~~~~~~~~F~~~L~~~~~~~G-m~i~~-~ 591 (697)
-.+|.|..++.+..... ...-|+.- ....|.....|.-+. .++.. ...+..+.+.+....+..+ +...- -
T Consensus 307 ek~pdiv~g~~gktti~--n~nl~~yl--py~~p~~~~l~nei~~iv~d~El-~~rlk~~~kkv~~~fkn~n~i~~k~eg 381 (685)
T COG1431 307 EKGPDIVIGTEGKTTID--NVNLFCYL--PYFKPDGTMLWNEISPIVTDSEL-LTRLKSTIKKVVYGFKNSNGIDWKVEG 381 (685)
T ss_pred ccCCceEecccceeeEe--hhhhhhhh--cccccccceecceeeEEEehhhh-hhHHHHHHHHHHHHHHhccchhhhccc
Confidence 35667776664332111 12233321 122343445554432 22221 3457888888888888887 43211 1
Q ss_pred CcccccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccCChHHHH
Q 005428 592 PVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLA 671 (697)
Q Consensus 592 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~~~q~~~ 671 (697)
+.+.+-+.++. ....|..+++++ ....+...-+-++...|+.+|++ +.=|++|.++-.+..|.-.-++.
T Consensus 382 ~~l~~a~~r~~-~kddl~~iIkei-------d~ee~~k~e~ykdd~~YailKrl---d~~ipsqvil~~n~rk~~Kg~~t 450 (685)
T COG1431 382 LTLHVAGKRPK-MKDDLTKIIKEI-------DVEELKKQEMYKDDVKYAILKRL---DETIPSQVILDPNNRKPYKGTKT 450 (685)
T ss_pred ceeeecccchh-hhccchhhhhhh-------hhhhhccccccccchHHHHHHhh---cccCcceeeeccccCCcchhhhh
Confidence 22323233322 223445555443 12233333344666789999993 45599999998888876677899
Q ss_pred HHHHHHhccCCCcccccccCCc
Q 005428 672 NVSLKINVKVCLSFNSSVELNT 693 (697)
Q Consensus 672 NI~lKIN~KLGG~~n~~l~~~t 693 (697)
|+|.|+-+|-+|++....+.-+
T Consensus 451 nla~~~~~ktlgqpY~~r~~~g 472 (685)
T COG1431 451 NLASKRYLKTLGQPYLKRNGLG 472 (685)
T ss_pred HHHHHHHHHhcCCceeeeccCC
Confidence 9999999999999876555433
No 17
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=37.40 E-value=11 Score=43.39 Aligned_cols=10 Identities=70% Similarity=1.185 Sum_probs=0.0
Q ss_pred CCcccCCCCC
Q 005428 61 RGRRRGRGGR 70 (697)
Q Consensus 61 ~~~~~~~~~~ 70 (697)
+||+||+||+
T Consensus 533 ~g~gr~rg~~ 542 (556)
T PF05918_consen 533 RGGGRGRGRR 542 (556)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
Confidence 3333433333
No 18
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=24.66 E-value=3e+02 Score=30.84 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.4
Q ss_pred eeeechhhHH
Q 005428 245 AARANMHHLG 254 (697)
Q Consensus 245 ~~~i~l~~L~ 254 (697)
...-|+..|.
T Consensus 256 i~~kDFe~Ly 265 (641)
T KOG3915|consen 256 ISRKDFETLY 265 (641)
T ss_pred eecccHHHHH
Confidence 3444544443
No 19
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.91 E-value=2.1e+02 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=8.6
Q ss_pred EEEEEEEEEeEc
Q 005428 143 CIVKANHFFAEL 154 (697)
Q Consensus 143 v~l~tN~F~i~~ 154 (697)
+.-.+|.|+|.+
T Consensus 77 CSp~aNvy~IdF 88 (240)
T KOG4037|consen 77 CSPEANVYKIDF 88 (240)
T ss_pred eCcccceEEeee
Confidence 344788888876
No 20
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=21.95 E-value=3.7e+02 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=13.7
Q ss_pred cccccccCCCCCCCCCCccccc
Q 005428 96 VCDLVGSNANGAVGNGRSLCAT 117 (697)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ 117 (697)
..|+-+|+..+|+.+++.++.+
T Consensus 176 ~gSsegsSp~pSPp~~eep~~p 197 (224)
T PF15462_consen 176 MGSSEGSSPNPSPPEGEEPHPP 197 (224)
T ss_pred ccccCCCCCCCCCCcccCCCCC
Confidence 4455566666777776666533
No 21
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=1.6e+02 Score=29.53 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=55.7
Q ss_pred eecCCcccceeEEEEeCCCcCHHHHHHHHHHHHHHHHhcCCccCCCCcccccCCCchHHHHHHHHHHHHHhhccCCCCce
Q 005428 546 KMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELE 625 (697)
Q Consensus 546 kf~~~~~i~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 625 (697)
++++.+....-+++++..++.-. --..|+-.++..|+++. + +.+. .+.+++--+-=... ..+.-+.
T Consensus 68 ~il~~ad~~dVa~LVVGdPfgAT----THsDlvlRAk~~~ipv~---v--IHNA---SimNavG~CGLqlY--~fGetVS 133 (272)
T KOG3123|consen 68 KILDEADKEDVAFLVVGDPFGAT----THSDLVLRAKELGIPVE---V--IHNA---SIMNAVGCCGLQLY--NFGETVS 133 (272)
T ss_pred HHhhhhhhcceEEEEecCccccc----chhhhheehhhcCCCeE---E--Eech---HHHhhhccceeeee--ccCcEEE
Confidence 35556666777888777643211 11346667888888652 1 2221 22222221100000 0144556
Q ss_pred EEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccc
Q 005428 626 LLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKH 661 (697)
Q Consensus 626 lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t 661 (697)
++++--..+-...|+.||+ ..+.|++|-|++-=+
T Consensus 134 iv~ftd~wrP~SfydkI~~--Nr~~glHTLcLLDIk 167 (272)
T KOG3123|consen 134 IVFFTDNWRPESFYDKIKE--NRQLGLHTLCLLDIK 167 (272)
T ss_pred EEEEccCcCchhHHHHHHH--hhhcCceeEEEEEEe
Confidence 6655543355678999996 689999999998533
Done!