BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005429
(697 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/506 (45%), Positives = 318/506 (62%), Gaps = 18/506 (3%)
Query: 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWV 72
P GVT+PIS A P+ D + + ELE L+ L+ES EE KRE++LG++ QI ++W
Sbjct: 50 PTILGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWA 109
Query: 73 KELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHN 132
K+++ +GY +Q + A IFTFGSYRLGVHGPG+DID LCVGP ++ R DFF L +
Sbjct: 110 KQVSLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSD 168
Query: 133 ILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDL-DISDMSVLNDVD 191
IL E+TE V DA VPV+ F G+ IDL+YA ++ + E+L D+ D S L ++D
Sbjct: 169 ILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNID 228
Query: 192 EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 251
E ++ SLNGCRV DQILKLVPN+ +F LRC+K WA RRG+YSN+ GFLGGV+WALL A
Sbjct: 229 EKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTA 288
Query: 252 RVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAE-LGFSVWDPRKNRRDKTHHM 310
R+CQLYPN+ PS ++ RFF+VY +W+WP P++LC I E LG VW+P +RDK H M
Sbjct: 289 RICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNP---KRDKAHLM 345
Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
PIITPAYP MNS+YNVS STL++M +F G I ++E + W L E FF Y
Sbjct: 346 PIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSF 405
Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD----TSKPC 426
Y+++D + N +D W+GW+ES+LR L +E K PYP + + + P
Sbjct: 406 YIEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAV-PYPKGFTNNLHKANNPD 464
Query: 427 AHC-AFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG---MEICVSHIRRK 482
C +FFMGL + D+ +V EF I ++ +P M+I V +I++K
Sbjct: 465 QICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKK 524
Query: 483 QIPPYVFPEGYKRTRHPRLASQQRSS 508
Q+P +V EG P +++RSS
Sbjct: 525 QLPAFVKDEG---PEEPVKTTKKRSS 547
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/515 (41%), Positives = 309/515 (60%), Gaps = 9/515 (1%)
Query: 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQV 60
MS++ + S K YG+T PIS+A P E D ++L + G++E +EE R V
Sbjct: 4 MSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVV 63
Query: 61 LGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYV 120
LG++ + K+W+ +++ + +V IFTFGSYRLGVH GADIDALCV P +V
Sbjct: 64 LGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHV 123
Query: 121 SREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLD 180
R DFF L + + L+ V DA VPV+KF+FDG+ IDL++A ++ + ++LD
Sbjct: 124 ERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLD 182
Query: 181 ISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240
+ D S L +D +RSLNGCRV D+IL LVPN E F TLR +K WAKRRG+YSN+ GF
Sbjct: 183 LRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGF 242
Query: 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPR 300
LGGV+WA+LVAR CQLYPNA S LV +FF V++ W WPNPV+L +E+ L VWDPR
Sbjct: 243 LGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPR 302
Query: 301 KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFE 360
N D+ H MPIITPAYP NS+YNVSTST VM+++F+ G + +E+ K+ WS L E
Sbjct: 303 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 362
Query: 361 PYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYV 420
P FF+ YR+Y+ + A+ ++ L W G VES++R L +ER+ + L H P +
Sbjct: 363 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFP 421
Query: 421 DTSKPCAHCAF----FMGL---QRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGME 473
+ + F+G+ + + E V +DI+ + N K GM+
Sbjct: 422 GNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMK 481
Query: 474 ICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSS 508
I +H+++KQ+ Y+ E ++ + L+ RSS
Sbjct: 482 IEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSS 516
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/502 (43%), Positives = 313/502 (62%), Gaps = 22/502 (4%)
Query: 11 PPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKD 70
PP + YG+T PIS+A P E D ++L + L G++E +EE ++R +LG++ + K+
Sbjct: 15 PPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKE 74
Query: 71 WVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFIL 130
W++E++ + ++E+ IFTFGSYRLGVH GADIDALCV P +V R DFF
Sbjct: 75 WIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSF 133
Query: 131 HNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDV 190
++ L EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++
Sbjct: 134 YDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 191 DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLV 250
D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+LV
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
Query: 251 ARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHM 310
AR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H M
Sbjct: 254 ARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLM 313
Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
PIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++
Sbjct: 314 PIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKH 373
Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKP 425
Y+ + A L W G VES++R L +E++ + L Q P P E D +
Sbjct: 374 YIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREE- 432
Query: 426 CAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIR 480
+ +GL K E E D+ ++ F + +IN MF + M+I H++
Sbjct: 433 -FRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIAAMHVK 489
Query: 481 RKQ----IPPYVFPEGYKRTRH 498
RKQ +P +V KR +H
Sbjct: 490 RKQLHQLLPSHVL---QKRKKH 508
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/484 (44%), Positives = 306/484 (63%), Gaps = 15/484 (3%)
Query: 11 PPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKD 70
PP K YG+T PIS+A P E D ++L + L G++E +EE ++R +LG++ + K+
Sbjct: 15 PPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKE 74
Query: 71 WVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFIL 130
W++E++ + ++E+ IFTFGSYRLGVH GADIDALCV P +V R DFF
Sbjct: 75 WIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSF 133
Query: 131 HNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDV 190
++ L EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++
Sbjct: 134 YDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 191 DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLV 250
D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+LV
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
Query: 251 ARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHM 310
AR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H M
Sbjct: 254 ARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLM 313
Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
PIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++
Sbjct: 314 PIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKH 373
Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKP 425
Y+ + A L W G VES++R L +E++ + L Q P P E D K
Sbjct: 374 YIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KE 431
Query: 426 CAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIR 480
+ +GL K E E D+ ++ F + +IN MF + M+I H++
Sbjct: 432 EFRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVK 489
Query: 481 RKQI 484
RKQ+
Sbjct: 490 RKQL 493
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/484 (44%), Positives = 306/484 (63%), Gaps = 15/484 (3%)
Query: 11 PPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKD 70
PP K YG+T PIS+A P E D ++L + L G++E +EE ++R +LG++ + K+
Sbjct: 15 PPQKHYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKE 74
Query: 71 WVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFIL 130
W++E++ + ++E+ IFTFGSYRLGVH GADIDALCV P +V R DFF
Sbjct: 75 WIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSF 133
Query: 131 HNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDV 190
++ L EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++
Sbjct: 134 YDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 191 DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLV 250
D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+LV
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
Query: 251 ARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHM 310
AR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H M
Sbjct: 254 ARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLM 313
Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
PIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y++
Sbjct: 314 PIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKH 373
Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKP 425
Y+ + A L W G VES++R L +E++ + L Q P P E D K
Sbjct: 374 YIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KE 431
Query: 426 CAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIR 480
+ +GL K E E D+ ++ F + +IN MF + M+I H++
Sbjct: 432 EFRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVK 489
Query: 481 RKQI 484
RKQ+
Sbjct: 490 RKQL 493
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/517 (42%), Positives = 310/517 (59%), Gaps = 14/517 (2%)
Query: 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQV 60
MS++ + S K YG+T PIS+A P E D ++L + G++E +EE R V
Sbjct: 4 MSANTMLDSQRQQKHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVV 63
Query: 61 LGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYV 120
LG++ + K+W+ +++ + +V IFTFGSYRLGVH GADIDALCV P +V
Sbjct: 64 LGKLNNLVKEWISDISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHV 123
Query: 121 SREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLD 180
R DFF L + + L+ V DA VPV+KF+FDG+ IDL++A ++ + ++LD
Sbjct: 124 ERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLD 182
Query: 181 ISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240
+ D S L +D +RSLNGCRV D+IL LVPN E F TLR +K WAKRRG+YSN+ GF
Sbjct: 183 LRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGF 242
Query: 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPR 300
LGGV+WA+LVAR CQLYPNA S LV +FF V++ W WPNPV+L +E+ L VWDPR
Sbjct: 243 LGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPR 302
Query: 301 KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFE 360
N D+ H MPIITPAYP NS+YNVSTST VM+++F+ G + +E+ K+ WS L E
Sbjct: 303 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 362
Query: 361 PYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYV 420
P FF+ YR+Y+ + A+ ++ L W G VES++R L +ER+ + L H P +
Sbjct: 363 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFP 421
Query: 421 DTSKPCAHCA------FFMGL---QRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG 471
+ H A +F+G+ + + E V +DI+ + N K G
Sbjct: 422 GNKE--HHKANNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDG 479
Query: 472 MEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSS 508
M+I +H+++KQ+ Y+ P + + L+ RSS
Sbjct: 480 MKIEATHVKKKQLHHYL-PAEILQKKKKSLSDVSRSS 515
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/483 (44%), Positives = 308/483 (63%), Gaps = 13/483 (2%)
Query: 11 PPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKD 70
P PKQ+G++ PIS+A P + D + ++L + L G++E +EE ++R +L ++ + K+
Sbjct: 15 PAPKQFGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKE 74
Query: 71 WVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFIL 130
W++E++ R ++E+ IFTFGSYRLGVH GADIDALCV P +V R DFF
Sbjct: 75 WIREISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSF 133
Query: 131 HNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDV 190
++ L EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++
Sbjct: 134 YDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 191 DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLV 250
D +RSLNGCRV D+IL LVPN++ F TLR +K WAK +YSN+ GFLGGV+WA+LV
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLV 253
Query: 251 ARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHM 310
AR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H M
Sbjct: 254 ARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLM 313
Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
PIITPAYP NS+YNVS ST VM+++F+ G I E+ LNKA+WS LFE FF+ Y++
Sbjct: 314 PIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKH 373
Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKP 425
Y+ + A L W G VES++R L +E++ + L Q P P E D K
Sbjct: 374 YIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETAD--KE 431
Query: 426 CAHCAFFMGL-QRKP--GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHIRR 481
+ +GL +KP E++ +DI+ + ++ +IN MF + M+I H+RR
Sbjct: 432 EFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIAAMHLRR 490
Query: 482 KQI 484
K++
Sbjct: 491 KEL 493
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/478 (44%), Positives = 305/478 (63%), Gaps = 11/478 (2%)
Query: 15 QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKE 74
+YGV+ PIS+A P E D + L + L G++E +EE ++R VL ++ + K+W++E
Sbjct: 19 RYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIRE 78
Query: 75 LTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNIL 134
++ + ++E+ IFTFGSYRLGVH GADIDALCV PS+V R DFF + L
Sbjct: 79 ISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKL 137
Query: 135 AEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPT 194
EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++D
Sbjct: 138 KLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRC 197
Query: 195 VRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 254
+RSLNGCRV D+IL LVPN+++F TLR +K WAK +YSN+ GFLGGV+WA+LVAR C
Sbjct: 198 IRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTC 257
Query: 255 QLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIIT 314
QLYPNAV S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPIIT
Sbjct: 258 QLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIIT 317
Query: 315 PAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQV 374
PAYP NS+YNVS ST VM+++F+ G I E+ L+KA+WS LFE FF+ Y++Y+ +
Sbjct: 318 PAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVL 377
Query: 375 DIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAHC 429
A+ L W G VES++R L +E++ + L Q P P E D +
Sbjct: 378 LASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDMEEFRTMW 437
Query: 430 AFFMGLQRKP--GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHIRRKQI 484
+GL +KP E++ +DI+ + ++ ++N MF + GM+I H+RRK++
Sbjct: 438 VIGLGL-KKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMF-EMGMKITAMHLRRKEL 493
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/498 (42%), Positives = 311/498 (62%), Gaps = 21/498 (4%)
Query: 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWV 72
PK +G+T PIS+A + D ++L + L G++E EE++ + ++LG++ + K+W+
Sbjct: 1 PKTFGITSPISLAAAKDTDCTLMQKLIETLKPYGVFE--EEEQLQHRILGKLNNLVKEWI 58
Query: 73 KELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHN 132
+E++ L+ ++E+ IFTFG YRLGVH GADIDALCV P +V R DFF ++
Sbjct: 59 REISELKHLPQSVIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYD 117
Query: 133 ILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDE 192
L + EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++D
Sbjct: 118 KLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDI 177
Query: 193 PTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252
+RSLNGCRV D+IL LVPN++ F TLR +K WAKR +YSN+ GFLGGV+WA+LVAR
Sbjct: 178 RCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVAR 237
Query: 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPI 312
CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPI
Sbjct: 238 TCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPI 297
Query: 313 ITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYL 372
ITPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y++Y+
Sbjct: 298 ITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYI 357
Query: 373 QVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCA 427
+ A L W G VES++R L +E++ + L + P P E ++ K
Sbjct: 358 LLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPRSFPAPSENME--KEEF 415
Query: 428 HCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRK 482
+ +GL K E E D+ ++ F + +IN MF + M+I H++RK
Sbjct: 416 RTMWVIGLVFKKME-NSENLSVDLTYDIQSFTDTVDRQAINSKMF-ETEMKIAAMHVKRK 473
Query: 483 QI----PPYVFPEGYKRT 496
Q+ P +V P+ K +
Sbjct: 474 QLHQLQPSHVSPKKKKHS 491
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 260/390 (66%), Gaps = 1/390 (0%)
Query: 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
KQ+G+T PIS A TE + N L L L+ES E EKR +VL ++QI ++VK
Sbjct: 4 KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVK 63
Query: 74 ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
+++ + +++M +A IFT+GSYRLGV+GPG+DID L V P +VSR+ +FF L +
Sbjct: 64 KVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPM 122
Query: 134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
L E EEVT+L V DA+VP++KFKF G+SIDL++A +S V DL++SD ++L V+E
Sbjct: 123 LREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEER 182
Query: 194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
V SLNG RV DQIL+LVPN F LR +KFWA+RR +Y+NV GF GGV WA++VAR+
Sbjct: 183 CVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARI 242
Query: 254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
CQLYPNAV S++V++FFR+ W WP P++L I++ L +W+P+ DK H MPII
Sbjct: 243 CQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPII 302
Query: 314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
TPAYP M +++N++ ST +++ + I +++ + WSALF+ + FF Y++YL
Sbjct: 303 TPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDFFHRYKHYLT 362
Query: 374 VDIVAANADDLLAWKGWVESRLRQLTLMIE 403
+ A A+ L W G VES+LR L +E
Sbjct: 363 ITAAAKTAEAQLKWAGLVESKLRHLVTRLE 392
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/412 (44%), Positives = 274/412 (66%), Gaps = 7/412 (1%)
Query: 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
K YGVT+PIS GPT + N L + L G +ES++ +KR +VL +++ +++V
Sbjct: 4 KTYGVTEPISTNGPTPKENILNDALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEFVY 63
Query: 74 ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
+++ + SD M +DA +FTFGSYRLGV+GPG+DID L V P +V+R+ DFF + +I
Sbjct: 64 TVSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFADI 122
Query: 134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
+ + E+ E+ V DA+VP++K +FDG+SIDL+ A ++ V DL + D ++L ++DE
Sbjct: 123 IRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEK 182
Query: 194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
+RSLNG RV D+IL+LVP F LRC+K WA++R VY N+ GF GGV WA+LVAR+
Sbjct: 183 DLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVARI 242
Query: 254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
CQLYPNAV S +V +FF +YT W WP PV+L +I++ L VW+PR D+ H MP+I
Sbjct: 243 CQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPVI 302
Query: 314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
TPAYP M +++N+++ST +V++ + G++I +E+ K WS LFE + FF Y+ YL
Sbjct: 303 TPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSFFYKYKFYLC 362
Query: 374 VDIVAA---NADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT 422
V VAA +A++ W G++ES+LRQL L +E G HPY ++ +T
Sbjct: 363 V--VAASIDSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDFSNT 411
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/374 (48%), Positives = 253/374 (67%), Gaps = 7/374 (1%)
Query: 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
K YG+T PIS+A P + D ++L + L G++E ++E + R LG++ + K+W++
Sbjct: 15 KTYGITSPISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLNNLVKEWIR 74
Query: 74 ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
E++ L+ ++E+ IFTFGSYRLGVH GADIDALCV P +V R D F +
Sbjct: 75 EISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLFSSFYEK 133
Query: 134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
L + EEV +L+ V +A VPV+K FDG+ ID+L+A ++ + EDLD+ D S+L ++D
Sbjct: 134 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 193
Query: 194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
+RSLNGCRV D+IL LVPN++ F TLR +K WAKR +YSN+ GFLGGV+WA+LVAR
Sbjct: 194 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 253
Query: 254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H MPII
Sbjct: 254 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 313
Query: 314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
TPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y+ Y+
Sbjct: 314 TPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKYK-YVF 372
Query: 374 VDIVAANADDLLAW 387
+++A + AW
Sbjct: 373 YNLLA-----MFAW 381
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 358 bits (919), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 175/407 (42%), Positives = 267/407 (65%), Gaps = 3/407 (0%)
Query: 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
K +G+T P+S G T A+ + N L + L + G +E+++E R QVL ++++A+ +V
Sbjct: 5 KVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVY 64
Query: 74 ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
E+++ + SD M DA IFT+GSYRLGVHGPG+DID L V P +V+RE DFF + ++
Sbjct: 65 EVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSL 123
Query: 134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
L E +E+ E+ PV DA VP++K KF G+SIDL+ A + + V L +SD ++L ++DE
Sbjct: 124 LRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEK 183
Query: 194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
+R+LNG RV D+IL+LVP F LR +K WA+RR VY+N+ GF GGV WA+LVAR+
Sbjct: 184 DLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARI 243
Query: 254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
CQLYPNA +++++RFF + + W WP PV+L I++ L VW+P+ +D++H MP+I
Sbjct: 244 CQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVI 303
Query: 314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
TPAYP M +++N++ ST +V++ +F G I ++ NK W+ LFE FF Y+ YL+
Sbjct: 304 TPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLE 363
Query: 374 VDIVAANADDL-LAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEY 419
+ +D+ L W G VES++R L + +E K+ HP+ +
Sbjct: 364 ITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKI-AHPFTKPF 409
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 257/403 (63%), Gaps = 7/403 (1%)
Query: 16 YGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKEL 75
YGVT PIS+A T + + N L K L G +ES+ +KR +VL ++ + +++V ++
Sbjct: 6 YGVTPPISVANSTPKENELNDSLIKELKSRGSFESETATKKRVEVLNILQSMTEEFVYKV 65
Query: 76 TRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILA 135
+ + S+ M D IFTFGSYRLGV+GPG+DID L V P +VSR DFF + + +L
Sbjct: 66 SIKKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRN-DFFEVFYELLK 124
Query: 136 EMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195
E+ E+ PV DA VP++K +F G+SIDL++A + V DL + D ++L ++DE +
Sbjct: 125 GRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDL 184
Query: 196 RSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQ 255
R+LNG RV D+IL+LVP F LRC+K WA++R VY N+ GF GGV WA+LVAR+CQ
Sbjct: 185 RALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVARICQ 244
Query: 256 LYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITP 315
LYPNAV +++V +FF +Y+ W WP PV+L I++ L VW+PR D+ H MP+ITP
Sbjct: 245 LYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPVITP 304
Query: 316 AYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVD 375
AYP M +++N+++ST +V++ +FQ G + ++ + K WS L E + FF Y+ YL
Sbjct: 305 AYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDFFFRYKFYLC-- 362
Query: 376 IVAANAD---DLLAWKGWVESRLRQLTLMIERDTYGKLQCHPY 415
IVAA + L + G VES+LR L +E G HPY
Sbjct: 363 IVAATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPY 404
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 150/263 (57%), Gaps = 18/263 (6%)
Query: 248 LLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKT 307
+LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 308 HHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFES 367
H MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 368 YRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDT 422
Y++Y+ + A L W G VES++R L +E++ + L Q P P E ++
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSE--NS 178
Query: 423 SKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVS 477
K + +GL K E E D+ ++ F + +IN MF + ++I
Sbjct: 179 EKEEFRTMWVIGLVFKKME-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ETEIKIAAM 236
Query: 478 HIRRKQ----IPPYVFPEGYKRT 496
H++RKQ +P +V P+ K +
Sbjct: 237 HVKRKQLHQLLPSHVLPKKKKHS 259
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 188/367 (51%), Gaps = 18/367 (4%)
Query: 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKEL-TRLRGYSDQMVEDANALIFT 95
EL++FLV+ +Y ++ EK+ + + ++ + + W K++ G +D A A I+
Sbjct: 4 ELKEFLVKNDMYPMGDQVEKKRKAISKMTEYIQQWGKKIYIESAGVADDTDVKA-ATIYV 62
Query: 96 FGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMK 155
+GSYRL V+G +DIDA V S ++R+ DF+ L+ L +V EL+ + P +
Sbjct: 63 YGSYRLNVYGNNSDIDACIVSNSTITRD-DFYDGLYAELLNNPDVKELKQIPSKRSPHLS 121
Query: 156 FKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-- 213
+ + DL ++ + + ++LDI + ++L ++DE R++NG R D I VPN
Sbjct: 122 MIYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHS 181
Query: 214 VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVY 273
E F +R +K W K+RG+Y V FL G++ +LVA+V L+ +FF+VY
Sbjct: 182 EEAFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVY 241
Query: 274 TMWRW-PNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLR 332
+ W W PVML D+ N + K + I+TPA P N++++++ +L
Sbjct: 242 SSWDWLRTPVMLGTNDDF-----------NDKKKEGVIQILTPASPSENAAFSITKFSLE 290
Query: 333 VMMDQFQYGNTICEEVELNKAQ-WSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWV 391
++ + + G I E W+ LF+P F Y +++ + +++ + L G
Sbjct: 291 MIKRELKRGQEIVHEFSSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGKF 350
Query: 392 ESRLRQL 398
ES L L
Sbjct: 351 ESGLVNL 357
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 119/282 (42%), Gaps = 75/282 (26%)
Query: 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTF 96
E++ F+ A + S+EE E R Q + IR+ K Q+ DA+ + F
Sbjct: 182 EIKDFV--AYISPSREEIEIRNQTISTIREAVK--------------QLWPDAD--LHVF 223
Query: 97 GSYRLGVHGPGADIDALCVGPSYVSREE--DFFFILHNILAEMEEVTELQPVLDAHVPVM 154
GSY ++ PG+DID CV S + +E + + L + L + TE++ V A VP++
Sbjct: 224 GSYSTDLYLPGSDID--CVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPII 281
Query: 155 KF--KFDGLSIDLLYASISRL----VVREDLDISDMSVLNDVDEPTVRSLNGCRVADQIL 208
KF G+ ID+ + + + ++RE LD D P +R L
Sbjct: 282 KFVEPHSGIHIDVSFERTNGIEAAKLIREWLD----------DTPGLREL---------- 321
Query: 209 KLVPNVEHFCTTLRCLKFWAKRRGVYSNV-TGFLGGVNWALLVARVCQLYPNAVPS---- 263
L +F RR +NV TG LGG + LV ++P + +
Sbjct: 322 -----------VLIVKQFLHARR--LNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDP 368
Query: 264 -----MLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPR 300
+L+ FF +Y + V L + D G+ V+ P+
Sbjct: 369 KDNLGVLLIEFFELYGKNFGYDDVALGSSD----GYPVYFPK 406
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 29/168 (17%)
Query: 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSR--EEDFFFILHNILAEMEEVTELQPVLDAH 150
++ FGS+ ++ P +D+D + + P + R ++D F + H+ L +++ +E+Q + A+
Sbjct: 282 LYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHH-LKKLKLASEVQVITTAN 340
Query: 151 VPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKL 210
VP++KF +D L + +DIS ++P L C V + +K
Sbjct: 341 VPIIKF------VDPL--------TKVHVDIS-------FNQPG--GLKTCLVVNGFMKK 377
Query: 211 VPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258
P + +K + R + G L LV QL+P
Sbjct: 378 YPALRPLVI---IIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQLHP 422
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 75 LTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNIL 134
L R+R DAN + FGSY ++ PG+DID + S ++ + L + L
Sbjct: 220 LKRIRDAVQDFWPDAN--LHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYL 277
Query: 135 AEMEEVTELQPVLDAHVPVMKF 156
T++ + A VP++KF
Sbjct: 278 KRNGLATQVSVIAKARVPIIKF 299
>sp|P40971|LYS14_YEAST Lysine biosynthesis regulatory protein LYS14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LYS14 PE=1
SV=2
Length = 790
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 528 SVDQDGPEKRQSISPQKQDSLSP--DHLAPSSVRSGTG--------SNVEPV--IPDKRV 575
++D++ PE R+ LSP +L+P+S+ SG+ S EP +P
Sbjct: 6 NLDENSPEDRELAK-----VLSPPGSYLSPASLDSGSSFTNSGTSTSCFEPKNNLPSLSF 60
Query: 576 LNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCC 635
LN G + N +TS S ++G E+V ++ N+GS E + +P +S+ D
Sbjct: 61 LNARAGSLGGIFNHKQMTS-----PSNSNIGGENVESTTSSNDGSNENAGHPTTSEQD-Q 114
Query: 636 DADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSG 677
+AD ++ D NG H L N + S + G
Sbjct: 115 NADHPTI---SQADDNG------HSSLTPNPAVTSTVTDKKG 147
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 73 KELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHN 132
+ + +LR ++ DA+ + FGS+ ++ PG+DID + + + ++ + L
Sbjct: 199 RTIDKLRRAVKELWSDAD--LHVFGSFATDLYLPGSDIDCVVNSRNRDKEDRNYIYELAR 256
Query: 133 ILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLN-DVD 191
L ++ ++ VP++KF I S L+ DV
Sbjct: 257 HLKNKGLAIRMEVIVKTRVPIIKF------------------------IEPQSQLHIDVS 292
Query: 192 EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV-TGFLGGVNWALLV 250
L ++ + L+ P + ++ +F RR +NV TG LGG LV
Sbjct: 293 FERTNGLEAAKLIREWLRDSPGLRELVLIIK--QFLHSRR--LNNVHTGGLGGFTVICLV 348
Query: 251 ARVCQLYPNAVPS---------MLVSRFFRVY 273
++P + +L+ FF +Y
Sbjct: 349 YSFLNMHPRIKSNDIDVLDNLGVLLIDFFELY 380
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 35/171 (20%)
Query: 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREE--DFFFILHNILAEMEEVTELQPVLDAH 150
I FGSYR G+ +D+D + Y S+E ++ + +I+ E + + P+ A
Sbjct: 924 IACFGSYRTGLMTKNSDLDLVI----YSSKEALLPYYDRVKSIIKN--EFSNVMPIRGAR 977
Query: 151 VPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKL 210
+P++KF + + DL ++ +++ D SL RV
Sbjct: 978 IPIIKFT-------------GQYNIHCDLSFDNLLPIHNSDLILNYSLIDERVK------ 1018
Query: 211 VPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAV 261
T L +K+WA R + F W ++V Q P +
Sbjct: 1019 --------TLLMLVKYWASNRLIDKTHHAFPSSYTWCIMVIFYLQQIPEPI 1061
>sp|Q9AJ64|SCA4_RICAU Antigenic heat-stable 120 kDa protein (Fragment) OS=Rickettsia
australis GN=sca4 PE=4 SV=1
Length = 991
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 548 LSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAE--GGDVSNSSVITSVTSEVGSCEDV 605
++P+ SS+ + T + V P+ PD + L E A+ N +++ + T+ GS +D+
Sbjct: 350 ITPNQELKSSIETPTTTQVPPITPDSQPLQTETAQMPQSQQVNPNLLNAATALSGSMQDL 409
Query: 606 GNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRH 647
N AG ++ +G ++Q D +A + ++L N
Sbjct: 410 LNYVNAGLTKEKDG---------NTQIDLINAAATAILNNEK 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,556,818
Number of Sequences: 539616
Number of extensions: 11574783
Number of successful extensions: 33522
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 33261
Number of HSP's gapped (non-prelim): 291
length of query: 697
length of database: 191,569,459
effective HSP length: 125
effective length of query: 572
effective length of database: 124,117,459
effective search space: 70995186548
effective search space used: 70995186548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)